RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BRD4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024002

Ensembl transcript IDs: ENSMUST00000003726.16, ENSMUST00000120276.9, ENSMUST00000121285.8, ENSMUST00000125899.2, ENSMUST00000127893.8, ENSMUST00000230858.2, ENSMUST00000235598.2, ENSMUST00000237008.2, ENSMUST00000237692.2

Found 762 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGATCCTCAGCTaGCCGCCCGTCAGGCCTGCCCCGGGCACAGCATGCAGGAGAGCC +
Preference number: 1 (lower is better)
Translates to: SVRLAVRQMGSAILS*PPVRPAPGTACRRA
Trigger: GGCTCTCCTGCATGCTGTGCCCGGGGCAGGCCTGACGGGCGGGCAGCTGAGGATCGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 90 bp TCACAGGTCTGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTaGGCTCTGGGGCCAGTGAGGGTGGCTCATGAATGGGGTCGATGG +
Preference number: 1 (lower is better)
Translates to: SQVCCSPAEDPAWRS*ALGPVRVAHEWGRW
Trigger: CCATCGACCCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 90 bp TGCCCCGGGCACAGCATGCAGGAGAGCCAGGCCCAGAGACATCCCTaGCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAG +
Preference number: 1 (lower is better)
Translates to: CPGHSMQESQAQRHP*LLLLPRLPLTLWME
Trigger: CTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGCCAGGGATGTCTCTGGGCCTGGCTCTCCTGCATGCTGTGCCCGGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 90 bp TTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCAGCTTaGCGGTCTTGGGCTCTGGGGCCAGTGAGGGTGGCTCATGAATGG +
Preference number: 1 (lower is better)
Translates to: LEASQVCCSPAEDPA*RSWALGPVRVAHEW
Trigger: CCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR GCA 90 bp GCTGTGAGTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTaGTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGG +
Preference number: 1 (lower is better)
Translates to: AVSPVHPSLEASQVC*SPAEDPAWRSWALG
Trigger: CCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACTCACAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR GCA 90 bp GCTGCTGTGAGTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTaGTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTG +
Preference number: 1 (lower is better)
Translates to: AAVSPVHPSLEASQV*CSPAEDPAWRSWAL
Trigger: CAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACTCACAGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 90 bp AAGGGCCTCTGCCCCGCACGCGGGGAAGCAGGCCTCAGGTCCAGCTaGCACTTGACTCATATTGAGACGTGCCCTGAACTGACGTCCTCT +
Preference number: 1 (lower is better)
Translates to: KGLCPARGEAGLRSS*HLTHIETCPELTSS
Trigger: AGAGGACGTCAGTTCAGGGCACGTCTCAATATGAGTCAAGTGCCAGCTGGACCTGAGGCCTGCTTCCCCGCGTGCGGGGCAGAGGCCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR GCA 90 bp CTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTaGCCCGCACGCGGGGAAGCAGGCCTCAGGTCCAGCTGGCACTTG +
Preference number: 1 (lower is better)
Translates to: LCILCSQTFGAEKGL*PARGEAGLRSSWHL
Trigger: CAAGTGCCAGCTGGACCTGAGGCCTGCTTCCCCGCGTGCGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 90 bp CTGAGGGGGCACCATTGTCATGACAGGAGGCTGGGCAATGAGGTCTaGGGTGACAGCAGGAAAGGGGTGAGTTGTGGCCTGCACAGGTGG +
Preference number: 1 (lower is better)
Translates to: LRGHHCHDRRLGNEV*GDSRKGVSCGLHRW
Trigger: CCACCTGTGCAGGCCACAACTCACCCCTTTCCTGCTGTCACCCCAGACCTCATTGCCCAGCCTCCTGTCATGACAATGGTGCCCCCTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 90 bp TGCTCATGCACGGCCTTGAGCTGTTCCTGGAGTTCAGCCAGCCGCTaGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCG +
Preference number: 1 (lower is better)
Translates to: CSCTALSCSWSSASR*ARSSSESSVELSLS
Trigger: CGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAACAGCTCAAGGCCGTGCATGAGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR GCA 90 bp GTACTGGGTGGGGGCCTCCGCCTCGGTTCGCAGCCCACCAAAGCCTaGAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGA +
Preference number: 1 (lower is better)
Translates to: VLGGGLRLGSQPTKA*RPPQALPFLVKTNR
Trigger: TCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTGGTGGGCTGCGAACCGAGGCGGAGGCCCCCACCCAGTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR TCA 90 bp AGGTGGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTaGTGCTTGAGTTGTGTTTGGTACCGTGGATACACCAGGCTTTGC +
Preference number: 1 (lower is better)
Translates to: RWRRVLLRRLGLRRS*CLSCVWYRGYTRLC
Trigger: GCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR TCA 90 bp ATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTaGTCAAGCCAACCAGGGTGGCCCCACATGGGAGGTCACAATGTT +
Preference number: 1 (lower is better)
Translates to: IQEATCQVKLVTASI*SSQPGWPHMGGHNV
Trigger: AACATTGTGACCTCCCATGTGGGGCCACCCTGGTTGGCTTGATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 90 bp TTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTaGGAGCCGCCGCTCACTGAGGAGACGATCACACCATTTGGAGAT +
Preference number: 1 (lower is better)
Translates to: FTIQYSHSHTLPTAQ*EPPLTEETITPFGD
Trigger: ATCTCCAAATGGTGTGATCGTCTCCTCAGTGAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR GCA 90 bp TTCTTGGCAAACATCTCCTTGAGGATGCCACTGCAGCACTTTAGCTaGTCAGAGATCTTGCTGCTCTTCTCTGGCCCTGGGTGCTGCTGT +
Preference number: 1 (lower is better)
Translates to: FLANISLRMPLQHFS*SEILLLFSGPGCCC
Trigger: ACAGCAGCACCCAGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 90 bp AGGCCTGTCCATACGTGTGAACAGTCACCCCTGTCCAAACTGCCATaGACACACACTTCCACGGCACTATTCCCTTTTGCACAAGCGAAC +
Preference number: 1 (lower is better)
Translates to: RPVHTCEQSPLSKLP*THTSTALFPFAQAN
Trigger: GTTCGCTTGTGCAAAAGGGAATAGTGCCGTGGAAGTGTGTGTCCATGGCAGTTTGGACAGGGGTGACTGTTCACACGTATGGACAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 90 bp TCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTGCCCCTGTTTCTTTCCTCCCTCGTC +
Preference number: 1 (lower is better)
Translates to: SGSAEKLMLELCLVP*IHQALLPLFLSSLV
Trigger: GACGAGGGAGGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 90 bp GCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGCTTGTaGGGGAGGGGAGAGGGTCTGTTCAAGGCAAAGTCAGTGCCAGCA +
Preference number: 1 (lower is better)
Translates to: AQANTYKERLSIKGL*GRGEGLFKAKSVPA
Trigger: TGCTGGCACTGACTTTGCCTTGAACAGACCCTCTCCCCTCCCCCACAAGCCTTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 90 bp GATAGAGGGCAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTaGGAAGGTACTTGGCACCACCACAGTCTCATTTTAGCCCCAGGG +
Preference number: 1 (lower is better)
Translates to: DRGQQATLEYGNSGI*EGTWHHHSLILAPG
Trigger: CCCTGGGGCTAAAATGAGACTGTGGTGGTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTGCCCTCTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 90 bp GTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGTaGGGCTGCATGTCCCTCCCCAGCAACCTTGAAAGGTATTTATTT +
Preference number: 1 (lower is better)
Translates to: VIFLAHFPDPDLVWQ*GCMSLPSNLERYLF
Trigger: AAATAAATACCTTTCAAGGTTGCTGGGGAGGGACATGCAGCCCCACTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 90 bp TTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGTGGGGCTaGATGTCCCTCCCCAGCAACCTTGAAAGGTATTTATTTATTTTT +
Preference number: 1 (lower is better)
Translates to: FLAHFPDPDLVWQWG*MSLPSNLERYLFIF
Trigger: AAAAATAAATAAATACCTTTCAAGGTTGCTGGGGAGGGACATGCAGCCCCACTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR TCA 90 bp ACTGGGTTACTTGAACTTTTAGTACTCTACGGGAACAACAGAGACTaGAGGAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACA +
Preference number: 1 (lower is better)
Translates to: TGLLELLVLYGNNRD*RRIQEATCQVKLVT
Trigger: TGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTCCTTCAGTCTCTGTTGTTCCCGTAGAGTACTAAAAGTTCAAGTAACCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 90 bp AAAGATGGAAGGGACGAAGAGAGGAAACACACTGTGATCAGGCTTTaGACACAGAGCAGCACCACATGTATGCATAGAGGAGGATTATTA +
Preference number: 1 (lower is better)
Translates to: KDGRDEERKHTVIRL*TQSSTTCMHRGGLL
Trigger: TAATAATCCTCCTCTATGCATACATGTGGTGCTGCTCTGTGTGCAAAGCCTGATCACAGTGTGTTTCCTCTCTTCGTCCCTTCCATCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 90 bp TTCTGGAAAGGTTTGGATGATATGGTCTATTCTTGCCTCAACAGCTaGTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCA +
Preference number: 1 (lower is better)
Translates to: FWKGLDDMVYSCLNS*CHYWKLKMRMAVMA
Trigger: TGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 90 bp CAATTCCATAACTTGATGGAGTCCTGTCCCTTTCACAGAAGAAAATaGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTGGAACTGAAG +
Preference number: 1 (lower is better)
Translates to: QFHNLMESCPFHRRK*DLSYSSLGRNLELK
Trigger: CTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCATTTTCTTCTGTGAAAGGGACAGGACTCCATCAAGTTATGGAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 90 bp TTGGATGATATGGTCTATTCTTGCCTCAACAGCTGCTGTCATTATTaGAAGCTAAAGATGAGGATGGCCGTGATGGCAACGGAACTTGTT +
Preference number: 1 (lower is better)
Translates to: LDDMVYSCLNSCCHY*KLKMRMAVMATELV
Trigger: AACAAGTTCCGTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR TCA 90 bp ACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGATaGTATGGTCTATTCTTGCCTCAACAGCTGCTGTCATTATTGGAA +
Preference number: 1 (lower is better)
Translates to: TNAPTYFGLFLERFG*YGLFLPQQLLSLLE
Trigger: TTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 90 bp ACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTaGATGATATGGTCTATTCTTGCCTCAACAGCTGCTGTCATTATT +
Preference number: 1 (lower is better)
Translates to: TNKRPNLLWFVSGKV*MIWSILASTAAVII
Trigger: AATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 90 bp ACTTTGGTTTGTTTCTGGAAAGGTTTGGATGATATGGTCTATTCTTaGCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATG +
Preference number: 1 (lower is better)
Translates to: TLVCFWKGLDDMVYS*LNSCCHYWKLKMRM
Trigger: CATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAAACAAACCAAAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGACTCTGCACAGGCTGTaGAACTGGAGCAGGTGGGGG +
Preference number: 2 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVTLHRL*NWSRWG
Trigger: CCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGAGT...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR GCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTCTGCGATCCTCAGCTaGCCGCCCGTCAGGCCTGCC +
Preference number: 2 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLSAILS*PPVRPA
Trigger: GGCAGGCCTGACGGGCGGGCAGCTGAGGATCGCAGA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCAGAGAAGGGCCTCTaGCCCGCACGCGGGGAAGCA +
Preference number: 2 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLAEKGL*PARGEA
Trigger: TGCTTCCCCGCGTGCGGGGCAGAGGCCCTTCTCTGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGCTTGCCCTGGCCTCCTaGGAGTGGGCAGCGATGGCT +
Preference number: 2 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRLALAS*EWAAMA
Trigger: AGCCATCGCTGCCCACTCCCAGGAGGCCAGGGCAAG...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 90 bp CTCTGCCCCGCACGCGGGGAAGCAGGCCTCAGGTCCAGCTGGCACTaGACTCATATTGAGACGTGCCCTGAACTGACGTCCTCTGAGGGG +
Preference number: 2 (lower is better)
Translates to: LCPARGEAGLRSSWH*THIETCPELTSSEG
Trigger: CCCCTCAGAGGACGTCAGTTCAGGGCACGTCTCAATATGAGTCAAGTGCCAGCTGGACCTGAGGCCTGCTTCCCCGCGTGCGGGGCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR TCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCAGGTGGGAAGGAACTaGCTTTGGTTGGTGGCCTTA +
Preference number: 2 (lower is better)
Translates to: AQHTGLTRYWVGASASVRQVGRN*LWLVAL
Trigger: TAAGGCCACCAACCAAAGTCAGTTCCTTCCCACCTG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTCAATTAAAGGCTTGTaGGGGAGGGGAGAGGGTCTG +
Preference number: 2 (lower is better)
Translates to: AQHTGLTRYWVGASASVRSIKGL*GRGEGL
Trigger: CAGACCCTCTCCCCTCCCCCACAAGCCTTTAATTGA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCTGTCCAAACTGCCATaGACACACACTTCCACGGCA +
Preference number: 2 (lower is better)
Translates to: AQHTGLTRYWVGASASVRLSKLP*THTSTA
Trigger: TGCCGTGGAAGTGTGTGTCCATGGCAGTTTGGACAG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCAAGGCAGATGGGCTCTaGGATCCTCAGCTGCCCGCC +
Preference number: 2 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLKADGL*DPQLPA
Trigger: GGCGGGCAGCTGAGGATCGCAGAGCCCATCTGCCTT...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGAGGGGTGGTGGTATCTaGTTTCCTCTTCACCCCTTT +
Preference number: 2 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVRGGGI*FPLHPF
Trigger: AAAGGGGTGAAGAGGAAAGCAGATACCACCACCCCT...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCCCAGAGACATCCCTaGCTGCTGCTGCTTCCACGG +
Preference number: 2 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLAQRHP*LLLLPR
Trigger: CCGTGGAAGCAGCAGCAGCCAGGGATGTCTCTGGGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGCACAGGCTGTGGAACTaGAGCAGGTGGGGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: VRYILLWRLHRSAALPPRHRLWN*SRWGWW
Trigger: CCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTG...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CAA 90 bp GTGGCGGCAGCAACAATGTCCTGTGTATACTGTGTAGTCAGACATTaGGCGCAGAGAAGGGCCTCTGCCCCGCACGCGGGGAAGCAGGCC +
Preference number: 2 (lower is better)
Translates to: VAAATMSCVYCVVRH*AQRRASAPHAGKQA
Trigger: GGCCTGCTTCCCCGCGTGCGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGACATTGTTGCTGCCGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR TCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGGGAGGAGGGTTCTGCTaGGGCGTCTGGGTCTGCGGA +
Preference number: 2 (lower is better)
Translates to: WARSSSESSVELSLSEELGGGFC*GVWVCG
Trigger: TCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCC...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGTGGGCAGCGATGGCTaGGGTGTGAAGGACTCCCAA +
Preference number: 2 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLVGSDG*GVKDSQ
Trigger: TTGGGAGTCCTTCACACCCCAGCCATCGCTGCCCAC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGTTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTG +
Preference number: 2 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVLCLVP*IHQALL
Trigger: CAGCAAAGCCTGGTGTATCCACGGTACCAAACACAA...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGTGCTTGAGTTGTGTTTaGTACCGTGGATACACCAGG +
Preference number: 2 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVCLSCV*YRGYTR
Trigger: CCTGGTGTATCCACGGTACCAAACACAACTCAAGCA...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCACACAGGCTGTGGAACTaGAGCAGGTGGGGGTGGTGG +
Preference number: 2 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPHRLWN*SRWGWW
Trigger: CCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTG...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGCCCCGGGCACAGCATaGAGGAGAGCCAGGCCCAGA +
Preference number: 2 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCAPGTA*RRARPR
Trigger: TCTGGGCCTGGCTCTCCTGCATGCTGTGCCCGGGGC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGCAGAGAAGGGCCTCTaGCCCGCACGCGGGGAAGCA +
Preference number: 2 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYAEKGL*PARGEA
Trigger: TGCTTCCCCGCGTGCGGGGCAGAGGCCCTTCTCTGC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCCTTGCCCTGGCCTCCTaGGAGTGGGCAGCGATGGCT +
Preference number: 2 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGALALAS*EWAAMA
Trigger: AGCCATCGCTGCCCACTCCCAGGAGGCCAGGGCAAG...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGGAAAGGGGTGAGTTGTaGCCTGCACAGGTGGAGGAG +
Preference number: 2 (lower is better)
Translates to: VRYILLWRLHRSAALPPRERGEL*PAQVEE
Trigger: CTCCTCCACCTGTGCAGGCCACAACTCACCCCTTTC...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp TACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGGCTCCCAGCTTGGCGGTCTTaGGCTCTGGGGCCAGTGAGG +
Preference number: 2 (lower is better)
Translates to: YHLCRGWHCRRGHCNNWLPAWRS*ALGPVR
Trigger: CCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGG...GAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR CCA 90 bp TGGAGTTCAGCCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGCACCTTTGTAGGGGGTaGCACTGCAGGAGAGGACAC +
Preference number: 2 (lower is better)
Translates to: WSSASRWARSSSESSVELHLCRG*HCRRGH
Trigger: GTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTG...CAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR TCA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCAACAGCAGGAAAGGGGTaGGTTGTGGCCTGCACAGGT +
Preference number: 2 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPTAGKG*VVACTG
Trigger: ACCTGTGCAGGCCACAACTCACCCCTTTCCTGCTGT...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGCCCAGAGACATCCCTaGCTGCTGCTGCTTCCACGG +
Preference number: 2 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPAQRHP*LLLLPR
Trigger: CCGTGGAAGCAGCAGCAGCCAGGGATGTCTCTGGGC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGAAAACCAGTCTCGGTaGCGGCAGCAACAATGTCCT +
Preference number: 2 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRENQSR*RQQQCP
Trigger: AGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCAGTGCCAGCAAGGGGTaGGCCAGTGCCTTGCTGCTC +
Preference number: 2 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGASASKG*ASALLL
Trigger: GAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGACTCTGCACAGGCTGTaGAACTGGAGCAGGTGGGGG +
Preference number: 2 (lower is better)
Translates to: WARSSSESSVELSLSEELTLHRL*NWSRWG
Trigger: CCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGAGT...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGAGAGACATCCCTGGCTaGTGCTGCTTCCACGGCTGC +
Preference number: 2 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPRDIPG*CCFHGC
Trigger: GCAGCCGTGGAAGCAGCAGCAGCCAGGGATGTCTCT...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTCAATTAAAGGCTTGTaGGGGAGGGGAGAGGGTCTG +
Preference number: 2 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLSIKGL*GRGEGL
Trigger: CAGACCCTCTCCCCTCCCCCACAAGCCTTTAATTGA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGGCTCTGTGGCCTGCACAGGTaGAGGAGGGTTCTGCTGAGG +
Preference number: 2 (lower is better)
Translates to: YHLCRGWHCRRGHCNNWLCGLHR*RRVLLR
Trigger: CCTCAGCAGAACCCTCCTCCACCTGTGCAGGCCACA...GAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR CCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGGAAAGGGGTGAGTTGTaGCCTGCACAGGTGGAGGAG +
Preference number: 2 (lower is better)
Translates to: WARSSSESSVELSLSEELERGEL*PAQVEE
Trigger: CTCCTCCACCTGTGCAGGCCACAACTCACCCCTTTC...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTAGAGACATCCCTGGCTaGTGCTGCTTCCACGGCTGC +
Preference number: 2 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCRDIPG*CCFHGC
Trigger: GCAGCCGTGGAAGCAGCAGCAGCCAGGGATGTCTCT...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGATTTGTCTTCACAGGCTaGGGGGTGGTCGCAATGATG +
Preference number: 2 (lower is better)
Translates to: SGTSFFGGFTGLLLSRRGFVFTG*GVVAMM
Trigger: CATCATTGCGACCACCCCCCAGCCTGTGAAGACAAA...TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCATTTGTCTTCACAGGCTaGGGGGTGGTCGCAATGATG +
Preference number: 2 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPFVFTG*GVVAMM
Trigger: CATCATTGCGACCACCCCCCAGCCTGTGAAGACAAA...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR TCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGGGAGAAGTTGATGCTTaGGTTGTGTTTGGTACCGTG +
Preference number: 2 (lower is better)
Translates to: VRYILLWRLHRSAALPPRGEVDA*VVFGTV
Trigger: CACGGTACCAAACACAACTCAAGCATCAACTTCTCC...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR TCA 90 bp TCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGAGGTCTGCGGAGAAGTTaGTGCTTGAGTTGTGTTTGG +
Preference number: 2 (lower is better)
Translates to: SGTSFFGGFTGLLLSRRGGLRRS*CLSCVW
Trigger: CCAAACACAACTCAAGCATCAACTTCTCCGCAGACC...TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR GCA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGGTTTGGCAGTGGGGCTaGATGTCCCTCCCCAGCAAC +
Preference number: 2 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGVWQWG*MSLPSN
Trigger: GTTGCTGGGGAGGGACATGCAGCCCCACTGCCAAAC...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR GCA 90 bp TCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGAGGATACACCAGGCTTTaGTGCCCCTGTTTCTTTCCT +
Preference number: 2 (lower is better)
Translates to: SGTSFFGGFTGLLLSRRGGYTRL*CPCFFP
Trigger: AGGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCC...TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCACTGACTTTGGTTGGTaGCCTTACTCCCCAGGCGAG +
Preference number: 2 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGATDFGW*PYSPGE
Trigger: CTCGCCTGGGGAGTAAGGCCACCAACCAAAGTCAGT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGTTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTG +
Preference number: 2 (lower is better)
Translates to: VRYILLWRLHRSAALPPRLCLVP*IHQALL
Trigger: CAGCAAAGCCTGGTGTATCCACGGTACCAAACACAA...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CAA 90 bp CAGCGCAGTGGGAGCCGCCGCTCACTGAGGAGACGATCACACCATTaGGAGATAAGCAGTGCCACTGTGTCTGAGGAGAAGAGAGTTAAA +
Preference number: 2 (lower is better)
Translates to: QRSGSRRSLRRRSHH*EISSATVSEEKRVK
Trigger: TTTAACTCTCTTCTCCTCAGACACAGTGGCACTGCTTATCTCCAAATGGTGTGATCGTCTCCTCAGTGAGCGGCGGCTCCCACTGCGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 90 bp GCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAGGCTTTGCTGCCCCTGTTTCTTTCC +
Preference number: 2 (lower is better)
Translates to: AEASGSAEKLMLELC*VPWIHQALLPLFLS
Trigger: GGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CAA 90 bp GGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTaGTGTTTGGTACCGTGGATACACCAGGCTTTGCTGCCCCTGTTT +
Preference number: 2 (lower is better)
Translates to: GSAEASGSAEKLMLE*CLVPWIHQALLPLF
Trigger: AAACAGGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR TCA 90 bp CAGGTGGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGCAGAGGTCAAAAGCTaGGTTCTGTATAGTGTCTCC +
Preference number: 2 (lower is better)
Translates to: QVEEGSAEASGSAEKLMLAEVKS*VLYSVS
Trigger: GGAGACACTATACAGAACTCAGCTTTTGACCTCTGC...AAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR TCA 90 bp TCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGAGGAGAAGTTGATGCTTaGGTTGTGTTTGGTACCGTG +
Preference number: 2 (lower is better)
Translates to: SGTSFFGGFTGLLLSRRGGEVDA*VVFGTV
Trigger: CACGGTACCAAACACAACTCAAGCATCAACTTCTCC...TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR GCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCTCACCCTCTAGGAGATaGCACCCACCCAGAGGACCC +
Preference number: 2 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGSPSRR*HPPRGP
Trigger: GGGTCCTCTGGGTGGGTGGCATCTCCTAGAGGGTGA...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR TCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCGGGAACAACAGAGACTaGAGGAGAATTCAGGAGGCT +
Preference number: 2 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSGNNRD*RRIQEA
Trigger: AGCCTCCTGAATTCTCCTTCAGTCTCTGTTGTTCCC...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR TCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGGCAGAGGTCAAAAGCTaGGTTCTGTATAGTGTCTCC +
Preference number: 2 (lower is better)
Translates to: WARSSSESSVELSLSEELAEVKS*VLYSVS
Trigger: GGAGACACTATACAGAACTCAGCTTTTGACCTCTGC...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR TCA 90 bp TACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGGCTCGGTCTGCGGAGAAGTTaGTGCTTGAGTTGTGTTTGG +
Preference number: 2 (lower is better)
Translates to: YHLCRGWHCRRGHCNNWLGLRRS*CLSCVW
Trigger: CCAAACACAACTCAAGCATCAACTTCTCCGCAGACC...GAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCAGTCCACACAGGCTTaGCCTGGCCTCCTGGGAGTG +
Preference number: 2 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIQSTQA*PGLLGV
Trigger: CACTCCCAGGAGGCCAGGGCAAGCCTGTGTGGACTG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTAGTGCCAGCAAGGGGTaGGCCAGTGCCTTGCTGCTC +
Preference number: 2 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQISASKG*ASALLL
Trigger: GAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACT...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp CAGGTGGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGCTACCCATCTCTTCTaGGCAATTTTACCCACTACA +
Preference number: 2 (lower is better)
Translates to: QVEEGSAEASGSAEKLMLATHLF*AILPTT
Trigger: TGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAGC...AAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CCA 90 bp TACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGGCTCCGGTACATCCTTCTTTaGAGGCTTCACAGGTCTGCT +
Preference number: 2 (lower is better)
Translates to: YHLCRGWHCRRGHCNNWLRYILL*RLHRSA
Trigger: AGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCG...GAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR TCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGGAGCCGCCGCTCACTaGGGAGACGATCACACCATT +
Preference number: 2 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIGAAAH*GDDHTI
Trigger: AATGGTGTGATCGTCTCCTCAGTGAGCGGCGGCTCC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATCTGCGATCCTCAGCTaGCCGCCCGTCAGGCCTGCC +
Preference number: 2 (lower is better)
Translates to: ALFPFAQANTYKERLSIKSAILS*PPVRPA
Trigger: GGCAGGCCTGACGGGCGGGCAGCTGAGGATCGCAGA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGGCTACCCATCTCTTCTaGGCAATTTTACCCACTACA +
Preference number: 2 (lower is better)
Translates to: WARSSSESSVELSLSEELATHLF*AILPTT
Trigger: TGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAGC...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGAGAGTCAACATTTTTaGCAGAAAAAGTCAGAAGTC +
Preference number: 2 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAESQHF*QKKSEV
Trigger: GACTTCTGACTTTTTCTGGCAAAAATGTTGACTCTC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGACATCCCTGGCTGCTaGTGCTTCCACGGCTGCCCC +
Preference number: 2 (lower is better)
Translates to: ALFPFAQANTYKERLSIKDIPGC*CFHGCP
Trigger: GGGGCAGCCGTGGAAGCAGCAGCAGCCAGGGATGTC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR GCA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGACTGTGATCAGGCTTTaGACACAGAGCAGCACCACA +
Preference number: 2 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGTVIRL*TQSSTT
Trigger: TGTGGTGCTGCTCTGTGTGCAAAGCCTGATCACAGT...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR GCA 90 bp TACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGGCTCTCGTCCTCTTCCTTTTaGCTGGACTATCATGATCTC +
Preference number: 2 (lower is better)
Translates to: YHLCRGWHCRRGHCNNWLSSSSF*LDYHDL
Trigger: GAGATCATGATAGTCCAGGCAAAAGGAAGAGGACGA...GAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR CCA 90 bp CTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCAACGGAACTTGTGATCCTGACCTGGTTTaGCAGTGGGGCTGCATGTCC +
Preference number: 2 (lower is better)
Translates to: LSLLEAKDEDGRDGNGTCDPDLV*QWGCMS
Trigger: GGACATGCAGCCCCACTGCCAAACCAGGTCAGGATC...ACAAGTTCCGTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 90 bp GGAGAGGACACTGTAACAACTGGCTCTTCAGGCTCATCAGGCATCTaGGCAAAGCGCATTTCAAACACATCCTGGAGTTTTCGAGCCATG +
Preference number: 2 (lower is better)
Translates to: GEDTVTTGSSGSSGI*AKRISNTSWSFRAM
Trigger: CATGGCTCGAAAACTCCAGGATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTACAGTGTCCTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR TCA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGAAGCTCCAAGGTGTCTaGGACAGTTCTCTCAGAAGT +
Preference number: 2 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGKLQGV*DSSLRS
Trigger: ACTTCTGAGAGAACTGTCTCAGACACCTTGGAGCTT...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACAGTCCACACAGGCTTaGCCTGGCCTCCTGGGAGTG +
Preference number: 2 (lower is better)
Translates to: ALFPFAQANTYKERLSIKQSTQA*PGLLGV
Trigger: CACTCCCAGGAGGCCAGGGCAAGCCTGTGTGGACTG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTGACCTGGTTTGGCAGTaGGGCTGCATGTCCCTCCCC +
Preference number: 2 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGDLVWQ*GCMSLP
Trigger: GGGGAGGGACATGCAGCCCCACTGCCAAACCAGGTC...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTaGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACCACC +
Preference number: 2 (lower is better)
Translates to: SETQRSYQIEGSKQP*NMETLESGKVLGTT
Trigger: GGTGGTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR TCA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGAGCAATTCCATAACTTaGTGGAGTCCTGTCCCTTTC +
Preference number: 2 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGSNSIT*WSPVPF
Trigger: GAAAGGGACAGGACTCCATCAAGTTATGGAATTGCT...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR TCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTCCACTTCCCAGATCCTaGCCTGGTTTGGCAGTGGGG +
Preference number: 2 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGPLPRS*PGLAVG
Trigger: CCCCACTGCCAAACCAGGTCAGGATCTGGGAAGTGG...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCACCCCTGTCCAAACTaGCATGGACACACACTTCCA +
Preference number: 2 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIHPCPN*HGHTLP
Trigger: TGGAAGTGTGTGTCCATGGCAGTTTGGACAGGGGTG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR TCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAGTGTGCTGCTGGACATaGCTAATCCACCCCAGGGGA +
Preference number: 2 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGVCCWT*LIHPRG
Trigger: TCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACAC...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCTTTCACAGAAGAAAATaGGACTTAAGCTATAGCTCG +
Preference number: 2 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSFHRRK*DLSYSS
Trigger: CGAGCTATAGCTTAAGTCCCATTTTCTTCTGTGAAA...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACCAGGCAGTTTTCTGGTaGGGTGCTAGATCTGTGATT +
Preference number: 2 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHQAVFW*GARSVI
Trigger: AATCACAGATCTAGCACCCCACCAGAAAACTGCCTG...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGTGTCAGGCAGTTTTCTaGTGGGGTGCTAGATCTGTG +
Preference number: 2 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMCQAVF*WGARSV
Trigger: CACAGATCTAGCACCCCACCAGAAAACTGCCTGACA...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 90 bp TGTCCAAACTGCCATGGACACACACTTCCACGGCACTATTCCCTTTaGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGCT +
Preference number: 2 (lower is better)
Translates to: CPNCHGHTLPRHYSL*HKRTLIKSGSQLKA
Trigger: AGCCTTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGCCGTGGAAGTGTGTGTCCATGGCAGTTTGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 90 bp GGAATACGTCAGGCACAGGCCAAAGGGCAGCTCAAAATAGTACATTaGGCAAAAGGAGCTATCTTGAAGATAGAGACACACACAGAGGAC +
Preference number: 2 (lower is better)
Translates to: GIRQAQAKGQLKIVH*AKGAILKIETHTED
Trigger: GTCCTCTGTGTGTGTCTCTATCTTCAAGATAGCTCCTTTTGCCAAATGTACTATTTTGAGCTGCCCTTTGGCCTGTGCCTGACGTATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR TCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGTCCAGCTGGCACTTaGCTCATATTGAGACGTGCC +
Preference number: 2 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGPAGT*LILRRA
Trigger: GGCACGTCTCAATATGAGTCAAGTGCCAGCTGGACC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTCAGGGTGGCCCCACATaGGAGGTCACAATGTTCATC +
Preference number: 2 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGQGGPT*EVTMFI
Trigger: GATGAACATTGTGACCTCCCATGTGGGGCCACCCTG...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGAAAACCAGTCTCGGTaGCGGCAGCAACAATGTCCT +
Preference number: 2 (lower is better)
Translates to: ALFPFAQANTYKERLSIKENQSR*RQQQCP
Trigger: AGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCTGTCCAAACTGCCATaGACACACACTTCCACGGCA +
Preference number: 2 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLSKLP*THTSTA
Trigger: TGCCGTGGAAGTGTGTGTCCATGGCAGTTTGGACAG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CCA 90 bp CTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCAACGGAACTTGTGAAGACCAAAGAACTTaGGGAAGTGTTCACTGGGTT +
Preference number: 2 (lower is better)
Translates to: LSLLEAKDEDGRDGNGTCEDQRT*GSVHWV
Trigger: AACCCAGTGAACACTTCCCCAAGTTCTTTGGTCTTC...ACAAGTTCCGTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTTCCTGTGGGAATCTCTaGGCAAGAAGTCTCCTTTCC +
Preference number: 2 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGSCGNL*ARSLLS
Trigger: GGAAAGGAGACTTCTTGCCCAGAGATTCCCACAGGA...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR TCA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGCCTCCCCAGCAACCTTaGAAGGTATTTATTTATTTT +
Preference number: 2 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMPPQQP*KVFIYF
Trigger: AAAATAAATAAATACCTTTCAAGGTTGCTGGGGAGG...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAAGTCACTGCAAGGTCTaGAGTCTCAGAAAAAGATGG +
Preference number: 2 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGSHCKV*SLRKRW
Trigger: CCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACT...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTAAAGAACCCACTAAATaGGGCTTTTTATGTCAGGCA +
Preference number: 2 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGKEPTK*GFLCQA
Trigger: TGCCTGACATAAAAAGCCCCATTTAGTGGGTTCTTT...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGAGAGTCAACATTTTTaGCAGAAAAAGTCAGAAGTC +
Preference number: 2 (lower is better)
Translates to: ALFPFAQANTYKERLSIKESQHF*QKKSEV
Trigger: GACTTCTGACTTTTTCTGGCAAAAATGTTGACTCTC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 72 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTaGGCTCTGGGGCCAGTGAGGGTGGCTCATGAATGG +
Preference number: 3 (lower is better)
Translates to: CCSPAEDPAWRS*ALGPVRVAHEW
Trigger: CCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR GCA 72 bp CTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTaGCCCGCACGCGGGGAAGCAGGCCTCAGGTCCAGC +
Preference number: 3 (lower is better)
Translates to: LCSQTFGAEKGL*PARGEAGLRSS
Trigger: GCTGGACCTGAGGCCTGCTTCCCCGCGTGCGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 72 bp GACAGCAGGAAAGGGGTGAGTTGTGGCCTGCACAGGTaGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGG +
Preference number: 3 (lower is better)
Translates to: DSRKGVSCGLHR*RRVLLRRLGLR
Trigger: CCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTGTGCAGGCCACAACTCACCCCTTTCCTGCTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTGTGTAGTCAGACATTaGGCGCAGAGAAGGGCCTCT +
Preference number: 3 (lower is better)
Translates to: AQHTGLTRYWVGASASVRCVVRH*AQRRAS
Trigger: AGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGGGTGGGCCAGTGCCTaGCTGCTCCAGTCCACACAG +
Preference number: 3 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLGWASA*LLQSTQ
Trigger: CTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR GCA 72 bp GGGGGCCTCCGCCTCGGTTCGCAGCCCACCAAAGCCTaGAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAA +
Preference number: 3 (lower is better)
Translates to: GGLRLGSQPTKA*RPPQALPFLVK
Trigger: TTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTGGTGGGCTGCGAACCGAGGCGGAGGCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR GCA 72 bp CCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTaGTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGG +
Preference number: 3 (lower is better)
Translates to: PVHPSLEASQVC*SPAEDPAWRSW
Trigger: CCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 72 bp CACAGCATGCAGGAGAGCCAGGCCCAGAGACATCCCTaGCTGCTGCTGCTTCCACGGCTGCCCCTAACACTA +
Preference number: 3 (lower is better)
Translates to: HSMQESQAQRHP*LLLLPRLPLTL
Trigger: TAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGCCAGGGATGTCTCTGGGCCTGGCTCTCCTGCATGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 72 bp TGCCCCGCACGCGGGGAAGCAGGCCTCAGGTCCAGCTaGCACTTGACTCATATTGAGACGTGCCCTGAACTG +
Preference number: 3 (lower is better)
Translates to: CPARGEAGLRSS*HLTHIETCPEL
Trigger: CAGTTCAGGGCACGTCTCAATATGAGTCAAGTGCCAGCTGGACCTGAGGCCTGCTTCCCCGCGTGCGGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 72 bp CCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTaGAACTGTCGCTGTCGGAAGAACTGTCGCTGCTGC +
Preference number: 3 (lower is better)
Translates to: PAAGLALPQSRQ*NCRCRKNCRCC
Trigger: GCAGCAGCGACAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR GCA 72 bp AGTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTaGTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCT +
Preference number: 3 (lower is better)
Translates to: SPVHPSLEASQV*CSPAEDPAWRS
Trigger: AGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 72 bp CAGTACAGCCACAGTCACACACTACCCACAGCGCAGTaGGAGCCGCCGCTCACTGAGGAGACGATCACACCA +
Preference number: 3 (lower is better)
Translates to: QYSHSHTLPTAQ*EPPLTEETITP
Trigger: TGGTGTGATCGTCTCCTCAGTGAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCGGCACTATTCCCTTTaGCACAAGCGAACACTTATA +
Preference number: 3 (lower is better)
Translates to: AQHTGLTRYWVGASASVRRHYSL*HKRTLI
Trigger: TATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGCCG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CAA 90 bp TGGAGTTCAGCCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGAGCTGCTCAGAGATCTaGCTGCTCTTCTCTGGCCCT +
Preference number: 3 (lower is better)
Translates to: WSSASRWARSSSESSVELSCSEI*LLFSGP
Trigger: AGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCT...CAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCAGGCTCTCCCTTTCTaGGTAAAAACAAACAGATTT +
Preference number: 3 (lower is better)
Translates to: AQHTGLTRYWVGASASVRQALPF*VKTNRF
Trigger: AAATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR TCA 72 bp TGGCCTTACTCCCCAGGCGAGGCCTGTCCATACGTGTaGACAGTCACCCCTGTCCAAACTGCCATGGACACA +
Preference number: 3 (lower is better)
Translates to: WPYSPGEACPYV*TVTPVQTAMDT
Trigger: TGTGTCCATGGCAGTTTGGACAGGGGTGACTGTTCACACGTATGGACAGGCCTCGCCTGGGGAGTAAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR TCA 72 bp GCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTaGTCAAGCCAACCAGGGTGGCCCCACATGGGAGGT +
Preference number: 3 (lower is better)
Translates to: ATCQVKLVTASI*SSQPGWPHMGG
Trigger: ACCTCCCATGTGGGGCCACCCTGGTTGGCTTGATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp CAGGTGGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTTGGATACACCAGGCTTaGCTGCCCCTGTTTCTTTCC +
Preference number: 3 (lower is better)
Translates to: QVEEGSAEASGSAEKLMLWIHQA*LPLFLS
Trigger: GGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCCA...AAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 72 bp CAGAAACACAGGTGGGAAGGAACTGACTTTGGTTGGTaGCCTTACTCCCCAGGCGAGGCCTGTCCATACGTG +
Preference number: 3 (lower is better)
Translates to: QKHRWEGTDFGW*PYSPGEACPYV
Trigger: CACGTATGGACAGGCCTCGCCTGGGGAGTAAGGCCACCAACCAAAGTCAGTTCCTTCCCACCTGTGTTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 72 bp AGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTaGCTCTTCAGGCTCATCAGGCATCTTGGCAAAGCG +
Preference number: 3 (lower is better)
Translates to: RGWHCRRGHCNN*LFRLIRHLGKA
Trigger: CGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR CCA 72 bp CCACTATCCTTGCTGGCTCCCCAACAGGATCCCAGCTaGTATACTAAGGCTTTCCAAGGGGACCTCCCATTG +
Preference number: 3 (lower is better)
Translates to: PLSLLAPQQDPS*YTKAFQGDLPL
Trigger: CAATGGGAGGTCCCCTTGGAAAGCCTTAGTATACCAGCTGGGATCCTGTTGGGGAGCCAGCAAGGATAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR TCA 72 bp AGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTaGTGCTTGAGTTGTGTTTGGTACCGTGGATACACC +
Preference number: 3 (lower is better)
Translates to: RVLLRRLGLRRS*CLSCVWYRGYT
Trigger: GGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR GCA 72 bp CACTTCCCAGATCCTGACCTGGTTTGGCAGTGGGGCTaGATGTCCCTCCCCAGCAACCTTGAAAGGTATTTA +
Preference number: 3 (lower is better)
Translates to: HFPDPDLVWQWG*MSLPSNLERYL
Trigger: TAAATACCTTTCAAGGTTGCTGGGGAGGGACATGCAGCCCCACTGCCAAACCAGGTCAGGATCTGGGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 72 bp GCAGGGCAATTAAGGAGAGAAGCCCTCCACTATCCTTaGTGGCTCCCCAACAGGATCCCAGCTGGTATACTA +
Preference number: 3 (lower is better)
Translates to: AGQLRREALHYP*WLPNRIPAGIL
Trigger: TAGTATACCAGCTGGGATCCTGTTGGGGAGCCAGCAAGGATAGTGGAGGGCTTCTCTCCTTAATTGCCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 72 bp AATCAGAAACACAGGTGGGAAGGAACTGACTTTGGTTaGTGGCCTTACTCCCCAGGCGAGGCCTGTCCATAC +
Preference number: 3 (lower is better)
Translates to: NQKHRWEGTDFG*WPYSPGEACPY
Trigger: GTATGGACAGGCCTCGCCTGGGGAGTAAGGCCACCAACCAAAGTCAGTTCCTTCCCACCTGTGTTTCTGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CCA 72 bp GGGCAATTAAGGAGAGAAGCCCTCCACTATCCTTGCTaGCTCCCCAACAGGATCCCAGCTGGTATACTAAGG +
Preference number: 3 (lower is better)
Translates to: GQLRREALHYPC*LPNRIPAGILR
Trigger: CCTTAGTATACCAGCTGGGATCCTGTTGGGGAGCCAGCAAGGATAGTGGAGGGCTTCTCTCCTTAATTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCAGACGATCACACCATTaGGAGATAAGCAGTGCCACT +
Preference number: 3 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGARRSHH*EISSAT
Trigger: AGTGGCACTGCTTATCTCCAAATGGTGTGATCGTCT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CAA 90 bp TTCCTGGAGTTCAGCCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGACAGTTCATTGATTTTTaGCAAGAAGAGCTTCTCCAG +
Preference number: 3 (lower is better)
Translates to: FLEFSQPLGSLFLRVVSGQFIDF*QEELLQ
Trigger: CTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTG...TCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
3UTR-3UTR CAA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCACAGTTCATTGATTTTTaGCAAGAAGAGCTTCTCCAG +
Preference number: 3 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPQFIDF*QEELLQ
Trigger: CTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTG...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 72 bp CATACGTGTGAACAGTCACCCCTGTCCAAACTGCCATaGACACACACTTCCACGGCACTATTCCCTTTTGCA +
Preference number: 3 (lower is better)
Translates to: HTCEQSPLSKLP*THTSTALFPFA
Trigger: TGCAAAAGGGAATAGTGCCGTGGAAGTGTGTGTCCATGGCAGTTTGGACAGGGGTGACTGTTCACACGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR GCA 72 bp AGGGACGAAGAGAGGAAACACACTGTGATCAGGCTTTaGACACAGAGCAGCACCACATGTATGCATAGAGGA +
Preference number: 3 (lower is better)
Translates to: RDEERKHTVIRL*TQSSTTCMHRG
Trigger: TCCTCTATGCATACATGTGGTGCTGCTCTGTGTGCAAAGCCTGATCACAGTGTGTTTCCTCTCTTCGTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 72 bp GCTGGTATACTAAGGCTTTCCAAGGGGACCTCCCATTaGCCGGGAACAGAAAACTACCAACAAGGAAGAACA +
Preference number: 3 (lower is better)
Translates to: AGILRLSKGTSH*PGTENYQQGRT
Trigger: TGTTCTTCCTTGTTGGTAGTTTTCTGTTCCCGGGCAATGGGAGGTCCCCTTGGAAAGCCTTAGTATACCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGTGTAGTCAGACATTaGGCGCAGAGAAGGGCCTCT +
Preference number: 3 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQICVVRH*AQRRAS
Trigger: AGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR-3UTR CAA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCGAGCAATTCCATAACTaGATGGAGTCCTGTCCCTTT +
Preference number: 3 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLIEQFHN*MESCPF
Trigger: AAAGGGACAGGACTCCATCAAGTTATGGAATTGCTC...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGGGAAGGAACTGACTTaGGTTGGTGGCCTTACTCCC +
Preference number: 3 (lower is better)
Translates to: TKICQLCSLYSTATVTHYGKELT*VGGLTP
Trigger: GGGAGTAAGGCCACCAACCAAAGTCAGTTCCTTCCC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR TCA 72 bp GCAATTTTACCCACTACACGAGCAGAGGTCAAAAGCTaGGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCT +
Preference number: 3 (lower is better)
Translates to: AILPTTRAEVKS*VLYSVSLQSRS
Trigger: AGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTCGTGTAGTGGGTAAAATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CCA 72 bp ATGGTCTATTCTTGCCTCAACAGCTGCTGTCATTATTaGAAGCTAAAGATGAGGATGGCCGTGATGGCAACG +
Preference number: 3 (lower is better)
Translates to: MVYSCLNSCCHY*KLKMRMAVMAT
Trigger: CGTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGTGTTTCTGGAAAGGTTaGGATGATATGGTCTATTCT +
Preference number: 3 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGCFWKG*DDMVYS
Trigger: AGAATAGACCATATCATCCAAACCTTTCCAGAAACA...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR TCA 72 bp CTTGAACTTTTAGTACTCTACGGGAACAACAGAGACTaGAGGAGAATTCAGGAGGCTACGTGCCAGGTAAAG +
Preference number: 3 (lower is better)
Translates to: LELLVLYGNNRD*RRIQEATCQVK
Trigger: CTTTACCTGGCACGTAGCCTCCTGAATTCTCCTTCAGTCTCTGTTGTTCCCGTAGAGTACTAAAAGTTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 72 bp AACTTGATGGAGTCCTGTCCCTTTCACAGAAGAAAATaGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTG +
Preference number: 3 (lower is better)
Translates to: NLMESCPFHRRK*DLSYSSLGRNL
Trigger: CAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCATTTTCTTCTGTGAAAGGGACAGGACTCCATCAAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 72 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTaGGAAGGTACTTGGCACCACCACAGTCTCATTTTA +
Preference number: 3 (lower is better)
Translates to: QQATLEYGNSGI*EGTWHHHSLIL
Trigger: TAAAATGAGACTGTGGTGGTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTCCCTCCCCAGCAACCTaGAAAGGTATTTATTTATTT +
Preference number: 3 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVPSPAT*KGIYLF
Trigger: AAATAAATAAATACCTTTCAAGGTTGCTGGGGAGGG...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR TCA 72 bp GACCAAAGAACTTGGGGAAGTGTTCACTGGGTTACTTaGACTTTTAGTACTCTACGGGAACAACAGAGACTG +
Preference number: 3 (lower is better)
Translates to: DQRTWGSVHWVT*TFSTLREQQRL
Trigger: CAGTCTCTGTTGTTCCCGTAGAGTACTAAAAGTTCAAGTAACCCAGTGAACACTTCCCCAAGTTCTTTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 72 bp GGTTTGGATGATATGGTCTATTCTTGCCTCAACAGCTaGTGTCATTATTGGAAGCTAAAGATGAGGATGGCC +
Preference number: 3 (lower is better)
Translates to: GLDDMVYSCLNS*CHYWKLKMRMA
Trigger: GGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTAGAAGACCAAAGAACTaGGGGAAGTGTTCACTGGGT +
Preference number: 3 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGRRPKN*GKCSLG
Trigger: ACCCAGTGAACACTTCCCCAAGTTCTTTGGTCTTCT...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR TCA 72 bp CCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGATaGTATGGTCTATTCTTGCCTCAACAGCTGCTGTCA +
Preference number: 3 (lower is better)
Translates to: PTYFGLFLERFG*YGLFLPQQLLS
Trigger: TGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR-3UTR CAA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGACAGCTGCTGTCATTATaGGAAGCTAAAGATGAGGAT +
Preference number: 3 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGQLLSL*EAKDED
Trigger: ATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTG...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR GCA 72 bp TGTTTCTGGAAAGGTTTGGATGATATGGTCTATTCTTaGCTCAACAGCTGCTGTCATTATTGGAAGCTAAAG +
Preference number: 3 (lower is better)
Translates to: CFWKGLDDMVYS*LNSCCHYWKLK
Trigger: CTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CCA 72 bp CTACTTTGGTTTGTTTCTGGAAAGGTTTGGATGATATaGTCTATTCTTGCCTCAACAGCTGCTGTCATTATT +
Preference number: 3 (lower is better)
Translates to: LLWFVSGKVWMI*SILASTAAVII
Trigger: AATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATATCATCCAAACCTTTCCAGAAACAAACCAAAGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCAGGTGGGGGTGGCGGTaGCTGTGGCTGGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRRWGWR*LWLELL
Trigger: CAGCAGCTCCAGCCACAGCCACCGCCACCCCCACCT...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGGTGGAGGTTGCTGCTaGTGCTGCTGCGGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRGGGCC*CCCGGG
Trigger: CCCACCTCCGCAGCAGCAGCAGCAGCAACCTCCACC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGCCACAGCAGCTGCCTaGTGCTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRATAAA*CCCCCC
Trigger: GCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCTGCCATTGCCTCCCTaGGCCTCCGCTCCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRLPLPP*ASAPAL
Trigger: GAGAGCAGGAGCGGAGGCGCAGGGAGGCAATGGCAG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCCAGCTTGGCGGTCTTaGGCTCTGGGGCCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRPAWRS*ALGPVR
Trigger: CCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTTCATCTCAGGCCGCTaGGGCAGGTGGACTGGGGCC +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRFISGR*GRWTGA
Trigger: GGCCCCAGTCCACCTGCCCCAGCGGCCTGAGATGAA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCATCGCTGGGGCAGTCTaGTGTGGCATGGAGGGCGGA +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRIAGAV*CGMEGG
Trigger: TCCGCCCTCCATGCCACAGCAGACTGCCCCAGCGAT...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGCCTGCTGCTGCTGCTaGTGCTGCTCCTGTCTCTGC +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRACCCC*CCSCLC
Trigger: GCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCACTGCCTGGCAGCTGTaGTTCCAGGACGGGGACCTG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRTAWQL*FQDGDL
Trigger: CAGGTCCCCGTCCTGGAACCACAGCTGCCAGGCAGT...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGGGTGCACTCTGCTCTaGAGGCCGGATCACAGGCCT +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRGCTLL*RPDHRP
Trigger: AGGCCTGTGATCCGGCCTCCAGAGCAGAGTGCACCC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTGTGGCTGGAGCTGCTaGTGCTGCACAGAAGGGTGG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRCGWSC*CCTEGW
Trigger: CCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTTGTTGCTGGGGTGGTaGCTGTGGCTGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRLLLGW*LWLRRW
Trigger: CCACCTCCTCAGCCACAGCCACCACCCCAGCAACAA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGCTGCTGTCACTAGATaGGGGTGGGGCTACCACCTT +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRAAVTR*GWGYHL
Trigger: AAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGGTTGGGCCTGGGCCTaGGTTGTAGACATTTGGGAG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRGWAWA*VVDIWE
Trigger: CTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTTCTCTGGCCCTGGGTaGTGCTGTGAGTCCGGTACA +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRFSGPG*CCESGT
Trigger: TGTACCGGACTCACAGCAGCACCCAGGGCCAGAGAA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCAATTGTAGCTGCCATTaGCTCCCTGCGCCTCCGCTC +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRNCSCH*LPAPPL
Trigger: GAGCGGAGGCGCAGGGAGGCAATGGCAGCTACAATT...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGCCGAGGACCCAGCTTaGCGGTCTTGGGCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRAEDPA*RSWALG
Trigger: CCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCAGGAGCTGGATTCGCTaGTGCTCTCCGACTCAGAGG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRRSWIR*CSPTQR
Trigger: CCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCT...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAGGAGGAGGGTTCTGCTaGGGCGTCTGGGTCTGCGGA +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPGGGFC*GVWVCG
Trigger: TCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCC...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGGTGGGGGTGGAGGTTaGTGCTGCTGCTGCTGCGGA +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRGGGGG*CCCCCG
Trigger: TCCGCAGCAGCAGCAGCAGCAACCTCCACCCCCACC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGGAGAGACCACAGCATaGTGGTTGAGATGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRGETTA*WLRWGG
Trigger: TCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGCAGTCTGCTGTGGCATaGAGGGCGGAGGTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRQSAVA*RAEVVG
Trigger: CCCCACCACCTCCGCCCTCCATGCCACAGCAGACTG...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGTCAAAGACACTGCCTaGCAGCTGTGGTTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRVKDTA*QLWFQD
Trigger: GTCCTGGAACCACAGCTGCCAGGCAGTGTCTTTGAC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGAGACCACAGCATGCTaGTTGAGATGGGGTGGAGTG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRETTAC*LRWGGV
Trigger: CACTCCACCCCATCTCAACCAGCATGCTGTGGTCTC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCAGGTGGGGGTGGCGGTaGCTGTGGCTGGAGCTGCTG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLRWGWR*LWLELL
Trigger: CAGCAGCTCCAGCCACAGCCACCGCCACCCCCACCT...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGCCCATGACTGGCCCTaGTGGCTGTGGCTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRAHDWP*WLWLSP
Trigger: AGGGCTGAGCCACAGCCACCAGGGCCAGTCATGGGC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCTGTGGAGGATGGGGTaGTCGGATGCTTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRLWRMG*SDASVP
Trigger: TGGTACAGAAGCATCCGACCACCCCATCCTCCACAG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGGAGGAGGGTTCTGCTaGGGCGTCTGGGTCTGCGGA +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAGGGFC*GVWVCG
Trigger: TCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGGTGCTGGCTGCATTTaGTGGCTGGGGTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRGAGCI*WLGLGL
Trigger: CAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAGGTGCTGGCTGCATTTaGTGGCTGGGGTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPGAGCI*WLGLGL
Trigger: CAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACC...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGGCTGTGGCTGGAGCTaGTGCTGCTGCACAGAAGGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRGCGWS*CCCTEG
Trigger: CCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAGCC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCCACAGCAGCTGCCTaGTGCTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLATAAA*CCCCCC
Trigger: GCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTTTGTCTTCACAGGCTaGGGGGTGGTCGCAATGATG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRFVFTG*GVVAMM
Trigger: CATCATTGCGACCACCCCCCAGCCTGTGAAGACAAA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGGGTCGGGTAGGCTTTaGGGGCAGAGCAGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLGSGRL*GQSSSS
Trigger: CGAGCTGCTGCTCTGCCCCCAAAGCCTACCCGACCC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGTGCTGCACAGAAGGGTaGGGTGGAGGCGGCAAAGGC +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRCCTEG*GGGGKG
Trigger: GCCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCA...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCAAGTGAACTGGTCGTaGTGGAGGCTGGTGTTGTTG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRQVNWS*WRLVLL
Trigger: CAACAACACCAGCCTCCACCACGACCAGTTCACTTG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGCCTTGGCCCATGACTaGCCCTGGTGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAALAHD*PWWLWL
Trigger: GAGCCACAGCCACCAGGGCCAGTCATGGGCCAAGGC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCAGGTGGGCATCCCTaGCCTTGGCCCATGACTGGC +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLAGGHP*PWPMTG
Trigger: GCCAGTCATGGGCCAAGGCCAGGGATGCCCACCTGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGGCCGCTGGGGCAGGTaGACTGGGGCCTTGATGTTC +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAGRWGR*TGALMF
Trigger: GAACATCAAGGCCCCAGTCCACCTGCCCCAGCGGCC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGTGCTGGGGAGGAGACTaGTGGGTCAGGCTCTGGAAC +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRCWGGD*WVRLWN
Trigger: GTTCCAGAGCCTGACCCATCAGTCTCCTCCCCAGCA...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAGAGAGGGCTGCAAGCTaGTCATGCACGGCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPERAAS*SCTALS
Trigger: GCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTC...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTCCGGCTGCGGCAGGTaGAAGATGGGCTGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSASGCGR*KMGWVK
Trigger: CTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGGA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGTGTGGCTGGAGCTGCTaGTGCTGCACAGAAGGGTGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRCGWSC*CCTEGW
Trigger: CCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACA...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCCTCCTCATGCGCTCCTaGCTCAGCCGCTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLLLMRS*LSRSFS
Trigger: GGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAGGAG...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGCTCCTCATGCGCTCCTaGCTCAGCCGCTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSALLMRS*LSRSFS
Trigger: GGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAGGAG...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGCATCCACGGGCTGCTaGAAAGGCCACGCAAACTGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRASTGC*KGHANW
Trigger: CCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGCACAGGCTGTGGAACTaGAGCAGGTGGGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAHRLWN*SRWGWW
Trigger: CCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTG...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGACTCTGCACAGGCTGTaGAACTGGAGCAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRTLHRL*NWSRWG
Trigger: CCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGAGT...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAACTCTGCACAGGCTGTaGAACTGGAGCAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPTLHRL*NWSRWG
Trigger: CCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGAGT...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCGGTACATCCTTCTTTaGAGGCTTCACAGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRRYILL*RLHRSA
Trigger: AGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTCAGCACCAAATTCCTaGGCATCTCTGTACTCTCGG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRSAPNS*ASLYSR
Trigger: CCGAGAGTACAGAGATGCCCAGGAATTTGGTGCTGA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGCCTTGAGCTGTTCCTaGAGTTCAGCCAGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRALSCS*SSASRW
Trigger: CCAGCGGCTGGCTGAACTCCAGGAACAGCTCAAGGC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGAGGCGGCAAAGGCGGTaGGGGTTGGGACTGCACCTT +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSARRQRR*GLGLHL
Trigger: AAGGTGCAGTCCCAACCCCCACCGCCTTTGCCGCCT...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTGGGGGCTGCTGTCCTaGGGGTGGGTGAGTAGGTTG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLWGLLS*GWVSRL
Trigger: CAACCTACTCACCCACCCCCAGGACAGCAGCCCCCA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGCAGGCTGTGGTGGTaGGGGCTGCTGTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGRLWW*GLLSWG
Trigger: CCCCCAGGACAGCAGCCCCCACCACCACAGCCTGCC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGGTGGTCGCAGCTCCTaGGACAGCATAGGCACGGCA +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAGGRSS*DSIGTA
Trigger: TGCCGTGCCTATGCTGTCCCAGGAGCTGCGACCACC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGGAGAAGTTGATGCTTaGGTTGTGTTTGGTACCGTG +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRGEVDA*VVFGTV
Trigger: CACGGTACCAAACACAACTCAAGCATCAACTTCTCC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCCCTGGCCTTGGCCCATaGCTGGCCCTGGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAPGLGP*LALVAV
Trigger: CACAGCCACCAGGGCCAGTCATGGGCCAAGGCCAGG...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTAGGCACGGCAGCCGGTaGGGCAGGTGGGCATCCCTG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCRHGSR*GRWASL
Trigger: CAGGGATGCCCACCTGCCTCACCGGCTGCCGTGCCT...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGAGGTGCTGGCTGCATTTaGTGGCTGGGGTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: SGTSFFGGFTGLLLSRRGGAGCI*WLGLGL
Trigger: CAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACC...TCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACGGCATCCACGGGCTaGTGGAAAGGCCACGCAAAC +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRTASTG*WKGHAN
Trigger: GTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGT...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGTGGGGCAGCGCATTGTaGAAAGCTGGAGGAGAGACC +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRWGSAL*KAGGET
Trigger: GGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCA...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTGGAGCTGCTGCTGCTaGACAGAAGGGTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAWSCCC*TEGWGG
Trigger: TCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGGCTGGGGTTGGGCCTaGGCCTGCGTTGTAGACATT +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAGWGWA*ACVVDI
Trigger: AATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TTCCTGGAGTTCAGCCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGATTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTA +
Preference number: 4 (lower is better)
Translates to: FLEFSQPLGSLFLRVVSGFAGWG*AWACVV
Trigger: TACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAA...TCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGTTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTA +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRFAGWG*AWACVV
Trigger: TACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAA...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGTGGAGGATTGGTGCTaGCTGCATTTGCTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRVEDWC*LHLLAG
Trigger: CCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCAC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAGTGGAGGATTGGTGCTaGCTGCATTTGCTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPVEDWC*LHLLAG
Trigger: CCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCAC...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAAGGGTTGGAGGTCTCTaGGGGTGGAGGATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPRVGGL*GWRIGA
Trigger: AGCACCAATCCTCCACCCCCAGAGACCTCCAACCCT...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTGTGGCCTGCACAGGTaGAGGAGGGTTCTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLCGLHR*RRVLLR
Trigger: CCTCAGCAGAACCCTCCTCCACCTGTGCAGGCCACA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCGCCGAGGACCCAGCTTaGCGGTCTTGGGCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSAEDPA*RSWALG
Trigger: CCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGC...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCAGTTCAGCCAGCCGCTaGGCTCGCTCTTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLSSASR*ARSSSE
Trigger: CTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACT...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGCACTGTCAGAGGAGCTaGATTCGCTGGTGCTCTCCG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRHCQRS*IRWCSP
Trigger: CGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTG...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGTGTTGTTGCTGGGGTaGTGGCTGTGGCTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLVLLLG*WLWLRR
Trigger: CCTCCTCAGCCACAGCCACCACCCCAGCAACAACAC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp GCACGCGGGGAAGCAGGCCTCAGGTCCAGCTGGCACTaGACTCATATTGAGACGTGCCCTGAACTGACGTCC +
Preference number: 4 (lower is better)
Translates to: ARGEAGLRSSWH*THIETCPELTS
Trigger: GGACGTCAGTTCAGGGCACGTCTCAATATGAGTCAAGTGCCAGCTGGACCTGAGGCCTGCTTCCCCGCGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGCAGGGAGGTTCAGCTTaGCGGCATCCACGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: WARSSSESSVELSLSEELQGGSA*RHPRAA
Trigger: AGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTG...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR TCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGAGGAGGGTTCTGCTaGGGCGTCTGGGTCTGCGGA +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGGGFC*GVWVCG
Trigger: TCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCAAGGGTGATGCTGGATaGCTTGCTGGGGCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLKGDAG*LAGAWQ
Trigger: CTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTT...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCCTGGCCTTGGCCCATaGCTGGCCCTGGTGGCTGTG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFPGLGP*LALVAV
Trigger: CACAGCCACCAGGGCCAGTCATGGGCCAAGGCCAGG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGGGTGCTGGCTGCATTTaGTGGCTGGGGTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: WARSSSESSVELSLSEELGAGCI*WLGLGL
Trigger: CAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACC...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGCTGCAAGCTGCTCATaGACGGCCTTGAGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAAASCS*TALSCS
Trigger: GGAACAGCTCAAGGCCGTGCATGAGCAGCTTGCAGC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGGAGGTTGCTGCTGCTaGTGCTGCGGAGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAGGCCC*CCGGGG
Trigger: ACCCCCACCTCCGCAGCAGCAGCAGCAGCAACCTCC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGGAGGCTGCACCTTCTaGAGCTGCTGTAGGTACAAC +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRGGCTF*SCCRYN
Trigger: GTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTCTCCTGGCGCCGTCGTaGCTCCTCATGGGCTCGACG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCLLAPS*LLMGST
Trigger: CGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAG...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCTCCTGGCGCCGTCGTaGCTCCTCATGGGCTCGACG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYLLAPS*LLMGST
Trigger: CGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGGTGGAGGATTGGTGCTaGCTGCATTTGCTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRVEDWC*LHLLAG
Trigger: CCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCAC...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGCTGGGGGTGGAGGATTaGTGCTGGCTGCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRLGVED*CWLHLL
Trigger: CAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAG...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGAGGGTTGGAGGTCTCTaGGGGTGGAGGATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSARVGGL*GWRIGA
Trigger: AGCACCAATCCTCCACCCCCAGAGACCTCCAACCCT...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGAGGGTTGGAGGTCTCTaGGGGTGGAGGATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRRVGGL*GWRIGA
Trigger: AGCACCAATCCTCCACCCCCAGAGACCTCCAACCCT...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp CAGGTGGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGCATCCACGGGCTGCTaGAAAGGCCACGCAAACTGG +
Preference number: 4 (lower is better)
Translates to: QVEEGSAEASGSAEKLMLASTGC*KGHANW
Trigger: CCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGC...AAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGCCAGCTTGGCGGTCTTaGGCTCTGGGGCCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPPAWRS*ALGPVR
Trigger: CCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGG...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGAGGAGCTGGATTCGCTaGTGCTCTCCGACTCAGAGG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSARSWIR*CSPTQR
Trigger: CCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCT...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGGAGGGCGGAGGTGGTaGGGGTGGAGGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFGGRRW*GWRLLL
Trigger: CAGCAGCAACCTCCACCCCCACCACCTCCGCCCTCC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGAGGGCGGAGGTGGTaGGGGTGGAGGTTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGGRRW*GWRLLL
Trigger: CAGCAGCAACCTCCACCCCCACCACCTCCGCCCTCC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGTCAAAGACACTGCCTaGCAGCTGTGGTTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRVKDTA*QLWFQD
Trigger: GTCCTGGAACCACAGCTGCCAGGCAGTGTCTTTGAC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGAAAGGCGGTGGGGGTTaGGACTGCACCTTCACGGAA +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAKGGGG*DCTFTE
Trigger: TTCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTT...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTTGCTGTCCTGGGGGTaGTGGGGGCTGCTGAATATG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLLLSWG*WGLLNM
Trigger: CATATTCAGCAGCCCCCACCACCCCCAGGACAGCAA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCCATGACTGGCCCTaGTGGCTGTGGCTCAGCCCT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAAHDWP*WLWLSP
Trigger: AGGGCTGAGCCACAGCCACCAGGGCCAGTCATGGGC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGCTTGGCTGTGGAGGATaGGGTGGTCGGATGCTTCTG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSALGCGG*GGRMLL
Trigger: CAGAAGCATCCGACCACCCCATCCTCCACAGCCAAG...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGGCTCTGGGGCCAGTaGGGGTGGCTCATGAATGGG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGLWGQ*GWLMNG
Trigger: CCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGCTCAAAGCTGTCACTTaGGGACTTGGCTGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRLKAVT*GLGCGG
Trigger: TCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAG...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCAGGTTGGGCCTGGGCCTaGGTTGTAGACATTTGGGAG +
Preference number: 4 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPGWAWA*VVDIWE
Trigger: CTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACC...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCAGGGGTGGAGGATTGGTaGTGGCTGCATTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPGVEDW*WLHLLA
Trigger: AGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCC...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp TGGGGCTACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACACGGCATCCACGGGCTaGTGGAAAGGCCACGCAAAC +
Preference number: 4 (lower is better)
Translates to: WGYHLCRGWHCRRGHCNNTASTG*WKGHAN
Trigger: GTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGT...GTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGGTGGAGGTTGCTGCTaGTGCTGCTGCGGAGGTGGG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFGGGCC*CCCGGG
Trigger: CCCACCTCCGCAGCAGCAGCAGCAGCAACCTCCACC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTCCGGCTGCGGCAGGTaGAAGATGGGCTGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPSGCGR*KMGWVK
Trigger: CTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGGA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCTGCCATTGCCTCCCTaGGCCTCCGCTCCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFLPLPP*ASAPAL
Trigger: GAGAGCAGGAGCGGAGGCGCAGGGAGGCAATGGCAG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGTCCATCCCCCATTACTaGCAGATTTCTCAATCTTGT +
Preference number: 4 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVSIPHY*QISQSC
Trigger: ACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGA...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp AGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGGCTCTTCAGGCTCATCGCATCCACGGGCTGCTaGAAAGGCCACGCAAACTGG +
Preference number: 4 (lower is better)
Translates to: RGWHCRRGHCNNWLFRLIASTGC*KGHANW
Trigger: CCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGC...GATGAGCCTGAAGAGCCAGTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR CCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCATTTCAAACACATCCTaGAGTTTTCGAGCCATGGCT +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRISNTS*SFRAMA
Trigger: AGCCATGGCTCGAAAACTCCAGGATGTGTTTGAAAT...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCAGTCTGCTGTGGCATaGAGGGCGGAGGTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFQSAVA*RAEVVG
Trigger: CCCCACCACCTCCGCCCTCCATGCCACAGCAGACTG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTCCAGGACGGGGACCTaGGCAGTGATGAAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGASRTGT*AVMKGG
Trigger: CCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGGA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCAGGTGCAAGATGGGCTaGGTGAAGTGGCCAATAGGG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLRCKMG*VKWPIG
Trigger: CCCTATTGGCCACTTCACCCAGCCCATCTTGCACCT...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGAGACCACAGCATGCTaGTTGAGATGGGGTGGAGTG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAETTAC*LRWGGV
Trigger: CACTCCACCCCATCTCAACCAGCATGCTGTGGTCTC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGGGTCGGGTAGGCTTTaGGGGCAGAGCAGCAGCTCG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFGSGRL*GQSSSS
Trigger: CGAGCTGCTGCTCTGCCCCCAAAGCCTACCCGACCC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGACCTGCTTCTTAGGCTaGACGTTTTGCTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRTCFLG*TFCWGG
Trigger: TCCTCCCCAGCAAAACGTCCAGCCTAAGAAGCAGGT...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGGGCATCCCTGGCCTTaGCCCATGACTGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYGHPWP*PMTGPG
Trigger: ACCAGGGCCAGTCATGGGCCAAGGCCAGGGATGCCC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGGTGGTCGCAGCTCCTaGGACAGCATAGGCACGGCA +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAGGRSS*DSIGTA
Trigger: TGCCGTGCCTATGCTGTCCCAGGAGCTGCGACCACC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGCCGCTGGGGCAGGTaGACTGGGGCCTTGATGTTC +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGRWGR*TGALMF
Trigger: GAACATCAAGGCCCCAGTCCACCTGCCCCAGCGGCC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCAGGGAGGTTCAGCTTaGCGGCATCCACGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYQGGSA*RHPRAA
Trigger: AGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTGGCAAACATCTCCTTaGGGATGCCACTGCAGCACT +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLWQTSP*GCHCST
Trigger: AGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTGCTGGGGAGGAGACTaGTGGGTCAGGCTCTGGAAC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGACWGGD*WVRLWN
Trigger: GTTCCAGAGCCTGACCCATCAGTCTCCTCCCCAGCA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGGTGCTGGCTGCATTTaGTGGCTGGGGTTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYGAGCI*WLGLGL
Trigger: CAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCACGGCATCCACGGGCTaGTGGAAAGGCCACGCAAAC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGATASTG*WKGHAN
Trigger: GTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGCTGCAGCACTTTAGCTaGTCAGAGATCTTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRLQHFS*SEILLL
Trigger: GAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAG...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCCTTCTTGCTCACATTaGTGTTGCTGCTGTTATTTT +
Preference number: 4 (lower is better)
Translates to: AQHTGLTRYWVGASASVRPSCSH*CCCCYF
Trigger: AAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTATCGCTGGGGCAGTCTaGTGTGGCATGGAGGGCGGA +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCIAGAV*CGMEGG
Trigger: TCCGCCCTCCATGCCACAGCAGACTGCCCCAGCGAT...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGCCCTGCCCTTTACCTaGTTCTTAGGCTGGACGTTT +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAALPFT*FLGWTF
Trigger: AAACGTCCAGCCTAAGAAGCAGGTAAAGGGCAGGGC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCCCTGCCCTTTACCTaGTTCTTAGGCTGGACGTTT +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLALPFT*FLGWTF
Trigger: AAACGTCCAGCCTAAGAAGCAGGTAAAGGGCAGGGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGTGGGGGTGCACTCTaGTCTGGAGGCCGGATCACA +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGGGAL*SGGRIT
Trigger: TGTGATCCGGCCTCCAGAGCAGAGTGCACCCCCACC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGATGGGGTGGTCGGATaGTTCTGTACCAGGCTGGCC +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPDGVVG*FCTRLA
Trigger: GGCCAGCCTGGTACAGAAGCATCCGACCACCCCATC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCAGGATACACCAGGCTTTaGTGCCCCTGTTTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPGYTRL*CPCFFP
Trigger: AGGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCC...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCAGTTCAGCCAGCCGCTaGGCTCGCTCTTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSSSASR*ARSSSE
Trigger: CTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACT...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTTTGGTTTGTTCTGCTaGGGCTGTGAGAGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAFGLFC*GCERAA
Trigger: TGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGGCTGGCTGCATCTGTaGATGGTGATGGTGATGATG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAGWLHL*MVMVMM
Trigger: CATCATCACCATCACCATCCACAGATGCAGCCAGCC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTACTGCCTGGCAGCTGTaGTTCCAGGACGGGGACCTG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCTAWQL*FQDGDL
Trigger: CAGGTCCCCGTCCTGGAACCACAGCTGCCAGGCAGT...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCCGCATTGTGCAAAGCTaGAGGAGAGACCACAGCATG +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLRIVQS*RRDHSM
Trigger: CATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCG...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGAGGGGTGGGGCAGGTaGCTCTTCATCCTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFEGWGR*LFILQQ
Trigger: CTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGCATGGAGGTGAGGGGTaGGGCAGGTGGCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPHGGEG*GRWLFI
Trigger: GATGAAGAGCCACCTGCCCCACCCCTCACCTCCATG...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACAGGCGGCAAAGGCGGTaGGGGTTGGGACTGCACCTT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYRRQRR*GLGLHL
Trigger: AAGGTGCAGTCCCAACCCCCACCGCCTTTGCCGCCT...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGCTGCTGTCCTGGGGGTaGGTGAGTAGGTTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPLLSWG*VSRLLS
Trigger: GGACAGCAACCTACTCACCCACCCCCAGGACAGCAG...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTTGGGGGCTGCTGTCCTaGGGGTGGGTGAGTAGGTTG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCWGLLS*GWVSRL
Trigger: CAACCTACTCACCCACCCCCAGGACAGCAGCCCCCA...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCACCTGCTTCTTAGGCTaGACGTTTTGCTGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLTCFLG*TFCWGG
Trigger: TCCTCCCCAGCAAAACGTCCAGCCTAAGAAGCAGGT...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCACTACCACCAGGGGCTaGGGCTGGACGACTGAAGGT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGATTTRG*GWTTEG
Trigger: ACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp GCAACAATGTCCTGTGTATACTGTGTAGTCAGACATTaGGCGCAGAGAAGGGCCTCTGCCCCGCACGCGGGG +
Preference number: 4 (lower is better)
Translates to: ATMSCVYCVVRH*AQRRASAPHAG
Trigger: CCCCGCGTGCGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGACATTGTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCACAGCAGGAAAGGGGTaGGTTGTGGCCTGCACAGGT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGATAGKG*VVACTG
Trigger: ACCTGTGCAGGCCACAACTCACCCCTTTCCTGCTGT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGCTGCTGTCACTAGATaGGGGTGGGGCTACCACCTT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPAAVTR*GWGYHL
Trigger: AAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGCTTATCCTCCTCTTCTaGTTCATATGTGGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSALILLF*FICGRR
Trigger: CCGCCTCCCACATATGAATCAGAAGAGGAGGATAAG...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCCCACAGCATGCTGGTTaGGATGGGGTGGAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAPQHAG*DGVECC
Trigger: ACAGCACTCCACCCCATCTCAACCAGCATGCTGTGG...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGTTGGGCCTGGGCCTaGGTTGTAGACATTTGGGAG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGWAWA*VVDIWE
Trigger: CTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCTTCTCTGGCCCTGGGTaGTGCTGTGAGTCCGGTACA +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSFSGPG*CCESGT
Trigger: TGTACCGGACTCACAGCAGCACCCAGGGCCAGAGAA...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTTCTCTGGCCCTGGGTaGTGCTGTGAGTCCGGTACA +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPFSGPG*CCESGT
Trigger: TGTACCGGACTCACAGCAGCACCCAGGGCCAGAGAA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGAGAGGGCTGCAAGCTaGTCATGCACGGCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCERAAS*SCTALS
Trigger: GCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGAGAGGGCTGCAAGCTaGTCATGCACGGCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFERAAS*SCTALS
Trigger: GCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTGGGGCAGCGCATTGTaGAAAGCTGGAGGAGAGACC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAWGSAL*KAGGET
Trigger: GGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACTGGAGCTGCTGCTGCTaGACAGAAGGGTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYWSCCC*TEGWGG
Trigger: TCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCA...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGATGGGGTGGTCGGATaGTTCTGTACCAGGCTGGCC +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFDGVVG*FCTRLA
Trigger: GGCCAGCCTGGTACAGAAGCATCCGACCACCCCATC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACTTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTA +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYFAGWG*AWACVV
Trigger: TACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAA...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGAGGGTTGGAGGTCTCTaGGGGTGGAGGATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPRVGGL*GWRIGA
Trigger: AGCACCAATCCTCCACCCCCAGAGACCTCCAACCCT...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGAAAGGGGTGAGTTGTaGCCTGCACAGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPERGEL*PAQVEE
Trigger: CTCCTCCACCTGTGCAGGCCACAACTCACCCCTTTC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCCCAGCTTGGCGGTCTTaGGCTCTGGGGCCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGPAWRS*ALGPVR
Trigger: CCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGG...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GAAACTAGGTGTGTGCTGCTGGACATGACTAATCCACCCCAGGGGATAGGCCCACACCTTTGTAGGGGGTaGCACTGCAGGAGAGGACAC +
Preference number: 4 (lower is better)
Translates to: ETRCVLLDMTNPPQGIGPHLCRG*HCRRGH
Trigger: GTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTG...TGGGCCTATCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACACACCTAGTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGCCTTGAGCTGTTCCTaGAGTTCAGCCAGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYALSCS*SSASRW
Trigger: CCAGCGGCTGGCTGAACTCCAGGAACAGCTCAAGGC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCAGGAGCTGGATTCGCTaGTGCTCTCCGACTCAGAGG +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSRSWIR*CSPTQR
Trigger: CCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCT...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGCGAGGACTTCATCGCTaGGGCAGTCTGCTGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPRGLHR*GSLLWH
Trigger: ATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCG...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGCAGTGATGAAGGGTaGGGGCGAGGACTTCATCGC +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGSDEG*GRGLHR
Trigger: GCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCCTGGTTGAGATGGGGTaGAGTGCTGTGCTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGALVEMG*SAVLRW
Trigger: CCACCTGAGCACAGCACTCCACCCCATCTCAACCAG...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGTGTTGTTGCTGGGGTaGTGGCTGTGGCTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFVLLLG*WLWLRR
Trigger: CCTCCTCAGCCACAGCCACCACCCCAGCAACAACAC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCTGTCCTGGGGGTGGTaGGGGCTGCTGAATATGAGC +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYLSWGW*GLLNMS
Trigger: GCTCATATTCAGCAGCCCCCACCACCCCCAGGACAG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp GGGAGCCGCCGCTCACTGAGGAGACGATCACACCATTaGGAGATAAGCAGTGCCACTGTGTCTGAGGAGAAG +
Preference number: 4 (lower is better)
Translates to: GSRRSLRRRSHH*EISSATVSEEK
Trigger: CTTCTCCTCAGACACAGTGGCACTGCTTATCTCCAAATGGTGTGATCGTCTCCTCAGTGAGCGGCGGCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp AGGATGCCACTGCAGCACTTTAGCTGCTCAGAGATCTaGCTGCTCTTCTCTGGCCCTGGGTGCTGCTGTGAG +
Preference number: 4 (lower is better)
Translates to: RMPLQHFSCSEI*LLFSGPGCCCE
Trigger: CTCACAGCAGCACCCAGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAGTGGCATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR TCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGATGGTTCCCTTGACTaGATTATGTGTACTACACGG +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRDGSLD*IMCTTR
Trigger: CCGTGTAGTACACATAATTCAGTCAAGGGAACCATC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTAAGGGTGATGCTGGATaGCTTGCTGGGGCTTGGCAG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCKGDAG*LAGAWQ
Trigger: CTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTT...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGGGGTGGAGGATTGGTaGTGGCTGCATTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFGVEDW*WLHLLA
Trigger: AGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGGGTGGAGGATTGGTaGTGGCTGCATTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGVEDW*WLHLLA
Trigger: AGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTTGGGGGTGGAGGATTGGTaGTGGCTGCATTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: GSAEASGSAEKLMLELCLGVEDW*WLHLLA
Trigger: AGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCC...CAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGCTGCTCAGAGATCTTaGTGCTCTTCTCTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPAAQRS*CSSLAL
Trigger: CAGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGCTGCAAGCTGCTCATaGACGGCCTTGAGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCAASCS*TALSCS
Trigger: GGAACAGCTCAAGGCCGTGCATGAGCAGCTTGCAGC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGTACTGGTTCCTTCTTaGTCACATTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAVLVPS*SHCCCC
Trigger: GCAGCAACAGCAATGTGAGCAAGAAGGAACCAGTAC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCTCCAGGCTACCCATCTCTTCTGGGCAATTTTACCCACTACACGAGCAGAGGTGGCTGGGGTTGGGCCTaGGCCTGCGTTGTAGACATT +
Preference number: 4 (lower is better)
Translates to: SPGYPSLLGNFTHYTSRGGWGWA*ACVVDI
Trigger: AATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCC...ACCTCTGCTCGTGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAGCCTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGTTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTA +
Preference number: 4 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGFAGWG*AWACVV
Trigger: TACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAA...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGTGGAGGATTGGTGCTaGCTGCATTTGCTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFVEDWC*LHLLAG
Trigger: CCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCAC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTTGGTGGAGGATTGGTGCTaGCTGCATTTGCTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSAEASGSAEKLMLELCLVEDWC*LHLLAG
Trigger: CCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCAC...CAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTCTGGGGGTGGAGGATTaGTGCTGGCTGCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCLGVED*CWLHLL
Trigger: CAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAG...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCTGGGGGTGGAGGATTaGTGCTGGCTGCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYLGVED*CWLHLL
Trigger: CAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGAAAGGGGTGAGTTGTaGCCTGCACAGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFERGEL*PAQVEE
Trigger: CTCCTCCACCTGTGCAGGCCACAACTCACCCCTTTC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCCACAGGCTGTGGAACTaGAGCAGGTGGGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGHRLWN*SRWGWW
Trigger: CCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTG...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCACCTTTGTAGGGGGTaGCACTGCAGGAGAGGACAC +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYHLCRG*HCRRGH
Trigger: GTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCACCTTTGTAGGGGGTaGCACTGCAGGAGAGGACAC +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFHLCRG*HCRRGH
Trigger: GTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCACTGTCAGAGGAGCTaGATTCGCTGGTGCTCTCCG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYHCQRS*IRWCSP
Trigger: CGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACCGAGGACTTCATCGCTaGGGCAGTCTGCTGTGGCAT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYRGLHR*GSLLWH
Trigger: ATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCG...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTTGAGGACTTGGCTGTaGAGGATGGGGTGGTCGGAT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGALRTWL*RMGWSD
Trigger: ATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp GTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTaGGGAGGGGCAAGGGAGGCACATAGCCAAGATACG +
Preference number: 4 (lower is better)
Translates to: VALYVCTCVDRV*GGAREAHSQDT
Trigger: CGTATCTTGGCTATGTGCCTCCCTTGCCCCTCCCAACACCCTGTCTACACACGTGCATACATACAGGGCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 72 bp GGCAGGGCAATTAAGGAGAGAAGCCCTCCACTATCCTaGCTGGCTCCCCAACAGGATCCCAGCTGGTATACT +
Preference number: 4 (lower is better)
Translates to: GRAIKERSPPLS*LAPQQDPSWYT
Trigger: AGTATACCAGCTGGGATCCTGTTGGGGAGCCAGCAAGGATAGTGGAGGGCTTCTCTCCTTAATTGCCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp AGTAGCCATGTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGCAGGGAGGTTCAGCTTaGCGGCATCCACGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SSHVIFLAHFPDPDLVWQQGGSA*RHPRAA
Trigger: AGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTG...CTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTACATGGCTACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp GAAACTAGGTGTGTGCTGCTGGACATGACTAATCCACCCCAGGGGATAGGCCCATGGCAAACATCTCCTTaGGGATGCCACTGCAGCACT +
Preference number: 4 (lower is better)
Translates to: ETRCVLLDMTNPPQGIGPWQTSP*GCHCST
Trigger: AGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCA...TGGGCCTATCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACACACCTAGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGATGGTTCCCTTGACTaGATTATGTGTACTACACGG +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSADGSLD*IMCTTR
Trigger: CCGTGTAGTACACATAATTCAGTCAAGGGAACCATC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCTCCGCAAACAGGAGGTaGCATATCGCTCCAACTCTC +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSSANRR*HIAPTL
Trigger: GAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGA...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTCCGCAAACAGGAGGTaGCATATCGCTCCAACTCTC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGASANRR*HIAPTL
Trigger: GAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGCTGCTCAGAGATCTTaGTGCTCTTCTCTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYAAQRS*CSSLAL
Trigger: CAGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGGGGTGGAGTGCTGTaGTCAGGTGGCTGGGGCAGG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIWGGVL*SGGWGR
Trigger: CCTGCCCCAGCCACCTGAGCACAGCACTCCACCCCA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGTGCGTTGTAGACATTTaGGAGGTTTCTAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRCVVDI*EVSSPS
Trigger: GGATGGACTAGAAACCTCCCAAATGTCTACAACGCA...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp TCTCCAGGCTACCCATCTCTTCTGGGCAATTTTACCCACTACACGAGCAGAGGTAGGGTTGGAGGTCTCTaGGGGTGGAGGATTGGTGCT +
Preference number: 4 (lower is better)
Translates to: SPGYPSLLGNFTHYTSRGRVGGL*GWRIGA
Trigger: AGCACCAATCCTCCACCCCCAGAGACCTCCAACCCT...ACCTCTGCTCGTGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAGCCTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp TGGAGTTCAGCCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGAGCAGATATTGCAGTTaGTTTGTCTGTCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: WSSASRWARSSSESSVELSRYCS*FVCLLG
Trigger: GCCCAAGAGACAGACAAACCAACTGCAATATCTGCT...CAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR CCA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGATTTCAAACACATCCTaGAGTTTTCGAGCCATGGCT +
Preference number: 4 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRISNTS*SFRAMA
Trigger: AGCCATGGCTCGAAAACTCCAGGATGTGTTTGAAAT...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGCATGCTGGTTGAGATaGGGTGGAGTGCTGTGCTCA +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFACWLR*GGVLCS
Trigger: TGAGCACAGCACTCCACCCCATCTCAACCAGCATGC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGCCTTGGCCCATGACTaGCCCTGGTGGCTGTGGCTC +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIALAHD*PWWLWL
Trigger: GAGCCACAGCCACCAGGGCCAGTCATGGGCCAAGGC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGCAGGTGGGCATCCCTaGCCTTGGCCCATGACTGGC +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIAGGHP*PWPMTG
Trigger: GCCAGTCATGGGCCAAGGCCAGGGATGCCCACCTGC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTTTGAGGACTTGGCTGTaGAGGATGGGGTGGTCGGAT +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFLRTWL*RMGWSD
Trigger: ATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAA...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp TCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAGGCTTTGCTGCCCCTG +
Preference number: 4 (lower is better)
Translates to: SGSAEKLMLELC*VPWIHQALLPL
Trigger: CAGGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
3UTR CAA 72 bp GAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTaGTGTTTGGTACCGTGGATACACCAGGCTTTGCTG +
Preference number: 4 (lower is better)
Translates to: EASGSAEKLMLE*CLVPWIHQALL
Trigger: CAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR TCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGTCTGCGGAGAAGTTaGTGCTTGAGTTGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGLRRS*CLSCVW
Trigger: CCAAACACAACTCAAGCATCAACTTCTCCGCAGACC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCACAGCAGGAAAGGGGTaGGTTGTGGCCTGCACAGGT +
Preference number: 4 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGTAGKG*VVACTG
Trigger: ACCTGTGCAGGCCACAACTCACCCCTTTCCTGCTGT...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTTCCGCAAACAGGAGGTaGCATATCGCTCCAACTCTC +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCSANRR*HIAPTL
Trigger: GAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGA...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAAGGCACGGCAGCCGGTaGGGCAGGTGGGCATCCCTG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKRHGSR*GRWASL
Trigger: CAGGGATGCCCACCTGCCTCACCGGCTGCCGTGCCT...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGTGTAGGGGGTGGCACTaGAGGAGAGGACACTGTAAC +
Preference number: 4 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGCRGWH*RRGHCN
Trigger: GTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACA...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGATACACCAGGCTTTaGTGCCCCTGTTTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGYTRL*CPCFFP
Trigger: AGGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGTCCATCCCCCATTACTaGCAGATTTCTCAATCTTGT +
Preference number: 4 (lower is better)
Translates to: VRYILLWRLHRSAALPPRSIPHY*QISQSC
Trigger: ACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGA...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp CAGGTGGAGGAGGGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTAAAGGCCACGCAAACTaGTGTTTCCATAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: QVEEGSAEASGSAEKLMLKGHAN*CFHSVL
Trigger: CAAGACACTATGGAAACACCAGTTTGCGTGGCCTTT...AAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTGCATCCACGGGCTGCTaGAAAGGCCACGCAAACTGG +
Preference number: 4 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVASTGC*KGHANW
Trigger: CCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGC...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCCGGTACATCCTTCTTTaGAGGCTTCACAGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSRYILL*RLHRSA
Trigger: AGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCG...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCTGGGCAGGATAGCCAGGCAGTCTTTGTACAGAGAGGCCCAGGCAGCAGGCCATGTACTTGTAGCAGTTaGAGAACATCAATCGGACAT +
Preference number: 4 (lower is better)
Translates to: AGQDSQAVFVQRGPGSRPCTCSS*RTSIGH
Trigger: ATGTCCGATTGATGTTCTCCAACTGCTACAAGTACA...TGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACGCCTTGAGCTGTTCCTaGAGTTCAGCCAGCCGCTGG +
Preference number: 4 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHALSCS*SSASRW
Trigger: CCAGCGGCTGGCTGAACTCCAGGAACAGCTCAAGGC...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTCTCCTCATAAGACATaGGCTTACACTTATCCTCCT +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSASPHKT*AYTYPP
Trigger: AGGAGGATAAGTGTAAGCCCATGTCTTATGAGGAGA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGGCTGGCTGCATCTGTaGATGGTGATGGTGATGATG +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYGWLHL*MVMVMM
Trigger: CATCATCACCATCACCATCCACAGATGCAGCCAGCC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCGCATTGTGCAAAGCTaGAGGAGAGACCACAGCATG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFRIVQS*RRDHSM
Trigger: CATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGCAGGCTGTGGTGGTaGGGGCTGCTGTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGRLWW*GLLSWG
Trigger: CCCCCAGGACAGCAGCCCCCACCACCACAGCCTGCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp AACAAAATCAGAAACACAGGTGGGAAGGAACTGACTTaGGTTGGTGGCCTTACTCCCCAGGCGAGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: NKIRNTGGKELT*VGGLTPQARPV
Trigger: GACAGGCCTCGCCTGGGGAGTAAGGCCACCAACCAAAGTCAGTTCCTTCCCACCTGTGTTTCTGATTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp AGTAGCCATGTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGGCTGCTGTCACTAGATaGGGGTGGGGCTACCACCTT +
Preference number: 4 (lower is better)
Translates to: SSHVIFLAHFPDPDLVWQAAVTR*GWGYHL
Trigger: AAGGTGGTAGCCCCACCCTCATCTAGTGACAGCAGC...CTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTACATGGCTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCTCCGACTCAGAGGATaGGAATCCCTTCATCTTGGA +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFLRLRG*ESLHLG
Trigger: TCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTGGAACTGTGGCATCTaGGGGGAATGTATCATAAGC +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPWNCGI*GECIIS
Trigger: GCTTATGATACATTCCCCTCAGATGCCACAGTTCCA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGCTGCGAATGATTGGTaGGTGAATCTTCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPAANDW*VNLLLL
Trigger: AAGGAGGAGAAGATTCACTCACCAATCATTCGCAGC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AGTAGCCATGTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGGGTTGGGCCTGGGCCTaGGTTGTAGACATTTGGGAG +
Preference number: 4 (lower is better)
Translates to: SSHVIFLAHFPDPDLVWQGWAWA*VVDIWE
Trigger: CTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACC...CTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTACATGGCTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp GAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTAGGTTGGGCCTGGGCCTaGGTTGTAGACATTTGGGAG +
Preference number: 4 (lower is better)
Translates to: EQRSKAEFCIVSPSRVVLGWAWA*VVDIWE
Trigger: CTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACC...TAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACAGGGGTGGTGGTATCTaGTTTCCTCTTCACCCCTTT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYRGGGI*FPLHPF
Trigger: AAAGGGGTGAAGAGGAAAGCAGATACCACCACCCCT...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGTACTGGTTCCTTCTTaGTCACATTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAVLVPS*SHCCCC
Trigger: GCAGCAACAGCAATGTGAGCAAGAAGGAACCAGTAC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGGTGGGGGTTGGGACTaGACCTTCACGGAAGGGAGT +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIGGGWD*TFTEGS
Trigger: ACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCGGGCCAACTCCCTCTaGTGGTCCAGCATAGACTGG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIRANSL*WSSIDW
Trigger: CCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TGGGGCTACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTGCGTTGTAGACATTTaGGAGGTTTCTAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: WGYHLCRGWHCRRGHCNNCVVDI*EVSSPS
Trigger: GGATGGACTAGAAACCTCCCAAATGTCTACAACGCA...GTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR CCA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGAGGCTGGGGTTGGGCCTaGGCCTGCGTTGTAGACATT +
Preference number: 4 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRGWGWA*ACVVDI
Trigger: AATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCC...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTACTGGGGGTGGAGGATTaGTGCTGGCTGCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: EQRSKAEFCIVSPSRVVLLGVED*CWLHLL
Trigger: CAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAG...TAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGCATCCACGGGCTGCTaGAAAGGCCACGCAAACTGG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIASTGC*KGHANW
Trigger: CCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTG +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGALCLVP*IHQALL
Trigger: CAGCAAAGCCTGGTGTATCCACGGTACCAAACACAA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TGGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTGGAACTGAAGACCGTTTTATGTGGCCTGCACAGGTaGAGGAGGGTTCTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: WDLSYSSLGRNLELKTVLCGLHR*RRVLLR
Trigger: CCTCAGCAGAACCCTCCTCCACCTGTGCAGGCCACA...TAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGCCGAGGACCCAGCTTaGCGGTCTTGGGCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKAEDPA*RSWALG
Trigger: CCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCGGTACATCCTTCTTTaGAGGCTTCACAGGTCTGCT +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFRYILL*RLHRSA
Trigger: AGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTTCAGCACCAAATTCCTaGGCATCTCTGTACTCTCGG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFSAPNS*ASLYSR
Trigger: CCGAGAGTACAGAGATGCCCAGGAATTTGGTGCTGA...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTAGTTCAGCCAGCCGCTaGGCTCGCTCTTCCTCAGAG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQISSASR*ARSSSE
Trigger: CTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACT...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCGGTCTTCGTGGGTACTaGTTCCTTCTTGCTCACATT +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSGLRGY*FLLAHI
Trigger: AATGTGAGCAAGAAGGAACCAGTACCCACGAAGACC...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCACAGGAGCTGGGGCTaGCTGCATCTGTGGATGGTG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIHRSWG*LHLWMV
Trigger: CACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTATGGGCTGGGTGAAGTaGCCAATAGGGTCAAAGACA +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFMGWVK*PIGSKT
Trigger: TGTCTTTGACCCTATTGGCCACTTCACCCAGCCCAT...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCATGGAGGTGAGGGGTaGGGCAGGTGGCTCTTCATC +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIHGGEG*GRWLFI
Trigger: GATGAAGAGCCACCTGCCCCACCCCTCACCTCCATG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp AGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTATTTGAACAGGGAGGTTCAGCTTaGCGGCATCCACGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: RSKAEFCIVSPSRVVLFEQGGSA*RHPRAA
Trigger: AGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTG...TTCAAATAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR TCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGAGAAGTTGATGCTTaGGTTGTGTTTGGTACCGTG +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGEVDA*VVFGTV
Trigger: CACGGTACCAAACACAACTCAAGCATCAACTTCTCC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAGGGCTCTGGGGCCAGTaGGGGTGGCTCATGAATGGG +
Preference number: 4 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGGLWGQ*GWLMNG
Trigger: CCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCC...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGCTGCGAATGATTGGTaGGTGAATCTTCTCCTCCTT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYAANDW*VNLLLL
Trigger: AAGGAGGAGAAGATTCACTCACCAATCATTCGCAGC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTAAGGCTCGCTGCGAATaGTTGGTGAGTGAATCTTCT +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCKARCE*LVSESS
Trigger: AGAAGATTCACTCACCAATCATTCGCAGCGAGCCTT...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGAACTGTCGCTGTCGGAAGAACTGACTCTGAGCAGATATTaGAGTTGGTTTGTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: WARSSSESSVELSLSEELTLSRY*SWFVCL
Trigger: GAGACAGACAAACCAACTGCAATATCTGCTCAGAGT...CAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR GCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTCGTCCTCTTCCTTTTaGCTGGACTATCATGATCTC +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPSSSSF*LDYHDL
Trigger: GAGATCATGATAGTCCAGGCAAAAGGAAGAGGACGA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTTACACCAGGCTTTGCTaGCCTACCTGTTTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFYTRLC*PTCFFP
Trigger: AGGAAAGAAACAGGTAGGGCAGCAAAGCCTGGTGTA...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000003726.16
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGAGGTTGCTGCTGCTaGTGCTGCGGAGGTGGGGGT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGGCCC*CCGGGG
Trigger: ACCCCCACCTCCGCAGCAGCAGCAGCAGCAACCTCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTAATTGTAGCTGCCATTaGCTCCCTGCGCCTCCGCTC +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQINCSCH*LPAPPL
Trigger: GAGCGGAGGCGCAGGGAGGCAATGGCAGCTACAATT...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTGCGTTGTAGACATTTaGGAGGTTTCTAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGACVVDI*EVSSPS
Trigger: GGATGGACTAGAAACCTCCCAAATGTCTACAACGCA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCAACGGAACTTGTCTGGGGGTGGAGGATTaGTGCTGGCTGCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: LSLLEAKDEDGRDGNGTCLGVED*CWLHLL
Trigger: CAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAG...ACAAGTTCCGTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCAGCAGATATTGCAGTTaGTTTGTCTGTCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGASRYCS*FVCLLG
Trigger: GCCCAAGAGACAGACAAACCAACTGCAATATCTGCT...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCAGCAGATATTGCAGTTaGTTTGTCTGTCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSSRYCS*FVCLLG
Trigger: GCCCAAGAGACAGACAAACCAACTGCAATATCTGCT...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp TGGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTGGAACTGAAGACCGTTTTAGAAAGGGGTGAGTTGTaGCCTGCACAGGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: WDLSYSSLGRNLELKTVLERGEL*PAQVEE
Trigger: CTCCTCCACCTGTGCAGGCCACAACTCACCCCTTTC...TAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCTCATCAGGCATCTTaGCAAAGCGCATTTCAAACA +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAAHQAS*QSAFQT
Trigger: TGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GAAACTAGGTGTGTGCTGCTGGACATGACTAATCCACCCCAGGGGATAGGCCCACTTCTCCTTTTTCTTTaGTTTGTTCTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: ETRCVLLDMTNPPQGIGPLLLFL*FVLLGL
Trigger: CAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAG...TGGGCCTATCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACACACCTAGTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACGGTCTTCGTGGGTACTaGTTCCTTCTTGCTCACATT +
Preference number: 4 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYGLRGY*FLLAHI
Trigger: AATGTGAGCAAGAAGGAACCAGTACCCACGAAGACC...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGACACTGTCAGAGGAGCTaGATTCGCTGGTGCTCTCCG +
Preference number: 4 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRHCQRS*IRWCSP
Trigger: CGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTG...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGCTGGATGACTTGCTaGGGCTTGGCAGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQICWMTC*GLAGCG
Trigger: ACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGGGCATCCCTGGCCTTaGCCCATGACTGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYGHPWP*PMTGPG
Trigger: ACCAGGGCCAGTCATGGGCCAAGGCCAGGGATGCCC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATTCATCTCAGGCCGCTaGGGCAGGTGGACTGGGGCC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKFISGR*GRWTGA
Trigger: GGCCCCAGTCCACCTGCCCCAGCGGCCTGAGATGAA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCTTGGCTGTGGAGGATaGGGTGGTCGGATGCTTCTG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQILGCGG*GGRMLL
Trigger: CAGAAGCATCCGACCACCCCATCCTCCACAGCCAAG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCAGGGAGGTTCAGCTTaGCGGCATCCACGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYQGGSA*RHPRAA
Trigger: AGCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TGGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTGGAACTGAAGACCGTTTTAGCTGCTCAGAGATCTTaGTGCTCTTCTCTGGCCCTG +
Preference number: 4 (lower is better)
Translates to: WDLSYSSLGRNLELKTVLAAQRS*CSSLAL
Trigger: CAGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGC...TAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCCTGCAGCACTTTAGCTaGTCAGAGATCTTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGLQHFS*SEILLL
Trigger: GAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAG...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGTAGGGGGTGGCACTaGAGGAGAGGACACTGTAAC +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQICRGWH*RRGHCN
Trigger: GTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGCTGTGGCTGGAGCTaGTGCTGCTGCACAGAAGGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGCGWS*CCCTEG
Trigger: CCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAGCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGTGGGGGTGCACTCTaGTCTGGAGGCCGGATCACA +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGGGAL*SGGRIT
Trigger: TGTGATCCGGCCTCCAGAGCAGAGTGCACCCCCACC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGGTGTTTTTGGCTCCTaGTTCTGTTTGTCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCGVFGS*FCLSLS
Trigger: TGACAAGGACAAACAGAAGCAGGAGCCAAAAACACC...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGCCTGCTGCTGCTGCTaGTGCTGCTCCTGTCTCTGC +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYACCCC*CCSCLC
Trigger: GCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTCCATCCCCCATTACTaGCAGATTTCTCAATCTTGT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPSIPHY*QISQSC
Trigger: ACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTTGCGTTGTAGACATTTaGGAGGTTTCTAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCCVVDI*EVSSPS
Trigger: GGATGGACTAGAAACCTCCCAAATGTCTACAACGCA...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTATTTGAAGGCTGGGGTTGGGCCTaGGCCTGCGTTGTAGACATT +
Preference number: 4 (lower is better)
Translates to: RSKAEFCIVSPSRVVLFEGWGWA*ACVVDI
Trigger: AATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCC...TTCAAATAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTAGCAGATATTGCAGTTaGTTTGTCTGTCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFSRYCS*FVCLLG
Trigger: GCCCAAGAGACAGACAAACCAACTGCAATATCTGCT...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTAAAGGCCACGCAAACTaGTGTTTCCATAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFKGHAN*CFHSVL
Trigger: CAAGACACTATGGAAACACCAGTTTGCGTGGCCTTT...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCTTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTG +
Preference number: 4 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLILCLVP*IHQALL
Trigger: CAGCAAAGCCTGGTGTATCCACGGTACCAAACACAA...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCACAGGCTGTGGAACTaGAGCAGGTGGGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYHRLWN*SRWGWW
Trigger: CCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACTTTGTCTTCACAGGCTaGGGGGTGGTCGCAATGATG +
Preference number: 4 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHFVFTG*GVVAMM
Trigger: CATCATTGCGACCACCCCCCAGCCTGTGAAGACAAA...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCTTCTCCTTTTTCTTTaGTTTGTTCTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFLLLFL*FVLLGL
Trigger: CAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTTTTCTTTGTCTTTTTaGGAGGAAGTTCCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAFSLSF*EEVPWF
Trigger: AAACCAAGGAACTTCCTCCCAAAAAGACAAAGAAAA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTCTCCTCATAAGACATaGGCTTACACTTATCCTCCT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPSPHKT*AYTYPP
Trigger: AGGAGGATAAGTGTAAGCCCATGTCTTATGAGGAGA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCAGAATCCCTTCATCTTaGAAGAACCAGCAATCACGT +
Preference number: 4 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSRIPSS*KNQQSR
Trigger: ACGTGATTGCTGGTTCTTCCAAGATGAAGGGATTCT...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATCCAGGACGGGGACCTaGGCAGTGATGAAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKSRTGT*AVMKGG
Trigger: CCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGGA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGAGGGGTGGGGCAGGTaGCTCTTCATCCTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYEGWGR*LFILQQ
Trigger: CTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATGCTGCACAGAAGGGTaGGGTGGAGGCGGCAAAGGC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKCCTEG*GGGGKG
Trigger: GCCTTTGCCGCCTCCACCCCACCCTTCTGTGCAGCA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGGTGCACTCTGCTCTaGAGGCCGGATCACAGGCCT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGCTLL*RPDHRP
Trigger: AGGCCTGTGATCCGGCCTCCAGAGCAGAGTGCACCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACCTTATCCTCCTCTTCTaGTTCATATGTGGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHLILLF*FICGRR
Trigger: CCGCCTCCCACATATGAATCAGAAGAGGAGGATAAG...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTCTCCGACTCAGAGGATaGGAATCCCTTCATCTTGGA +
Preference number: 4 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVLRLRG*ESLHLG
Trigger: TCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAG...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCGAATGATTGGTGAGTaGATCTTCTCCTCCTTTACT +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFRMIGE*IFSSFT
Trigger: AGTAAAGGAGGAGAAGATTCACTCACCAATCATTCG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTACTCTGAGCAGATATTaGAGTTGGTTTGTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFTLSRY*SWFVCL
Trigger: GAGACAGACAAACCAACTGCAATATCTGCTCAGAGT...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTACGGCATCCACGGGCTaGTGGAAAGGCCACGCAAAC +
Preference number: 4 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGTASTG*WKGHAN
Trigger: GTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGT...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAACGGCATCCACGGGCTaGTGGAAAGGCCACGCAAAC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKTASTG*WKGHAN
Trigger: GTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCCGT...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCGTACTGGTTCCTTCTTaGTCACATTGCTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGVLVPS*SHCCCC
Trigger: GCAGCAACAGCAATGTGAGCAAGAAGGAACCAGTAC...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACGGGCCAACTCCCTCTaGTGGTCCAGCATAGACTGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKRANSL*WSSIDW
Trigger: CCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTTCCATCCCCCATTACTaGCAGATTTCTCAATCTTGT +
Preference number: 4 (lower is better)
Translates to: AAAASTAAPNTMDGESTFSIPHY*QISQSC
Trigger: ACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGA...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGCTGGGGTTGGGCCTaGGCCTGCGTTGTAGACATT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGWGWA*ACVVDI
Trigger: AATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTA +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYFAGWG*AWACVV
Trigger: TACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTGTGGCCTGCACAGGTaGAGGAGGGTTCTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYCGLHR*RRVLLR
Trigger: CCTCAGCAGAACCCTCCTCCACCTGTGCAGGCCACA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAACTCTGCACAGGCTGTaGAACTGGAGCAGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKTLHRL*NWSRWG
Trigger: CCCCCACCTGCTCCAGTTCCACAGCCTGTGCAGAGT...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTGTACTTGTAGCAGTTaGAGAACATCAATCGGACAT +
Preference number: 4 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPCTCSS*RTSIGH
Trigger: ATGTCCGATTGATGTTCTCCAACTGCTACAAGTACA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTGTACTTGTAGCAGTTaGAGAACATCAATCGGACAT +
Preference number: 4 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGACTCSS*RTSIGH
Trigger: ATGTCCGATTGATGTTCTCCAACTGCTACAAGTACA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGTTTGGTTTGTTCTGCTaGGGCTGTGAGAGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMFGLFC*GCERAA
Trigger: TGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAA...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTTTGGTTTGTTCTGCTaGGGCTGTGAGAGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIFGLFC*GCERAA
Trigger: TGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACACAGGAGCTGGGGCTaGCTGCATCTGTGGATGGTG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKHRSWG*LHLWMV
Trigger: CACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGGCAGTGATGAAGGGTaGGGGCGAGGACTTCATCGC +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYGSDEG*GRGLHR
Trigger: GCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATTGTTGCTGGGGTGGTaGCTGTGGCTGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLLLGW*LWLRRW
Trigger: CCACCTCCTCAGCCACAGCCACCACCCCAGCAACAA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCAAGTGAACTGGTCGTaGTGGAGGCTGGTGTTGTTG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIQVNWS*WRLVLL
Trigger: CAACAACACCAGCCTCCACCACGACCAGTTCACTTG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTGTCCTGGGGGTGGTaGGGGCTGCTGAATATGAGC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLSWGW*GLLNMS
Trigger: GCTCATATTCAGCAGCCCCCACCACCCCCAGGACAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCTGCTGTCCTGGGGGTaGGTGAGTAGGTTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLLSWG*VSRLLS
Trigger: GGACAGCAACCTACTCACCCACCCCCAGGACAGCAG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTGGGGCAGGTGGACTaGGGCCTTGATGTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLGQVD*GLDVLW
Trigger: CCAGAGAACATCAAGGCCCCAGTCCACCTGCCCCAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp TGCCATGGACACACACTTCCACGGCACTATTCCCTTTaGCACAAGCGAACACTTATAAAGAGCGGCTCTCAA +
Preference number: 4 (lower is better)
Translates to: CHGHTLPRHYSL*HKRTLIKSGSQ
Trigger: TTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGCCGTGGAAGTGTGTGTCCATGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp GGAGCTATCTTGAAGATAGAGACACACACAGAGGACTaGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGG +
Preference number: 4 (lower is better)
Translates to: GAILKIETHTED*EWPKNSAAASW
Trigger: CCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCTCTATCTTCAAGATAGCTCC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACGGAGAAGTTGATGCTTaGGTTGTGTTTGGTACCGTG +
Preference number: 4 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHGEVDA*VVFGTV
Trigger: CACGGTACCAAACACAACTCAAGCATCAACTTCTCC...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCATGCTGGTTaGGATGGGGTGGAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYPQHAG*DGVECC
Trigger: ACAGCACTCCACCCCATCTCAACCAGCATGCTGTGG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAGGGGTGGAGGATTGGTaGTGGCTGCATTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGGVEDW*WLHLLA
Trigger: AGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCC...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp TCTCCAGGCTACCCATCTCTTCTGGGCAATTTTACCCACTACACGAGCAGAGGTACTCTGAGCAGATATTaGAGTTGGTTTGTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: SPGYPSLLGNFTHYTSRGTLSRY*SWFVCL
Trigger: GAGACAGACAAACCAACTGCAATATCTGCTCAGAGT...ACCTCTGCTCGTGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAGCCTGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR GCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTGCTGCAAGCTGCTCATaGACGGCCTTGAGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGAASCS*TALSCS
Trigger: GGAACAGCTCAAGGCCGTGCATGAGCAGCTTGCAGC...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTTCTTTGGTTTGTTCTaGTGGGGCTGTGAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIFFGLF*WGCERA
Trigger: AGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCAACGGAACTTGTTTCTTTGGTTTGTTCTaGTGGGGCTGTGAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: LSLLEAKDEDGRDGNGTCFFGLF*WGCERA
Trigger: AGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAA...ACAAGTTCCGTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTCCTTCTTGCTCACATTaGTGTTGCTGCTGTTATTTT +
Preference number: 4 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCPSCSH*CCCCYF
Trigger: AAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGG...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCGGAGAAGTTGATGCTTGAGTTGTGTTTGGTACCGTGGATACACCAGGCTTTGAAAGGCCACGCAAACTaGTGTTTCCATAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: AEKLMLELCLVPWIHQALKGHAN*CFHSVL
Trigger: CAAGACACTATGGAAACACCAGTTTGCGTGGCCTTT...CAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCTGGTTGAGATGGGGTaGAGTGCTGTGCTCAGGTGG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLVEMG*SAVLRW
Trigger: CCACCTGAGCACAGCACTCCACCCCATCTCAACCAG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAAAAGGCGGTGGGGGTTaGGACTGCACCTTCACGGAA +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKKGGGG*DCTFTE
Trigger: TTCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTT...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTTGCTGTCCTGGGGGTaGTGGGGGCTGCTGAATATG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLLSWG*WGLLNM
Trigger: CATATTCAGCAGCCCCCACCACCCCCAGGACAGCAA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATGCTGGATGACTTGCTaGGGCTTGGCAGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKCWMTC*GLAGCG
Trigger: ACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp AGTAGCCATGTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGGATGGTTCCCTTGACTaGATTATGTGTACTACACGG +
Preference number: 4 (lower is better)
Translates to: SSHVIFLAHFPDPDLVWQDGSLD*IMCTTR
Trigger: CCGTGTAGTACACATAATTCAGTCAAGGGAACCATC...CTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTACATGGCTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTGTAGGGGGTGGCACTaGAGGAGAGGACACTGTAAC +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYCRGWH*RRGHCN
Trigger: GTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGAGGCTGCACCTTCTaGAGCTGCTGTAGGTACAAC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGGCTF*SCCRYN
Trigger: GTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTAAGCAGATATTGCAGTTaGTTTGTCTGTCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: EQRSKAEFCIVSPSRVVLSRYCS*FVCLLG
Trigger: GCCCAAGAGACAGACAAACCAACTGCAATATCTGCT...TAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CCA 90 bp AGTAGCCATGTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGAAAGGCCACGCAAACTaGTGTTTCCATAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: SSHVIFLAHFPDPDLVWQKGHAN*CFHSVL
Trigger: CAAGACACTATGGAAACACCAGTTTGCGTGGCCTTT...CTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTACATGGCTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGCTTGAGTTGTGTTTaGTACCGTGGATACACCAGG +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQICLSCV*YRGYTR
Trigger: CCTGGTGTATCCACGGTACCAAACACAACTCAAGCA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CCTCAACAGCTGCTGTCATTATTGGAAGCTAAAGATGAGGATGGCCGTGATGGCATTTCAAACACATCCTaGAGTTTTCGAGCCATGGCT +
Preference number: 4 (lower is better)
Translates to: PQQLLSLLEAKDEDGRDGISNTS*SFRAMA
Trigger: AGCCATGGCTCGAAAACTCCAGGATGTGTTTGAAAT...GCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACAGGTGCAAGATGGGCTaGGTGAAGTGGCCAATAGGG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYRCKMG*VKWPIG
Trigger: CCCTATTGGCCACTTCACCCAGCCCATCTTGCACCT...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGCATGCTGGTTGAGATaGGGTGGAGTGCTGTGCTCA +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKACWLR*GGVLCS
Trigger: TGAGCACAGCACTCCACCCCATCTCAACCAGCATGC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCTGTGGAGGATGGGGTaGTCGGATGCTTCTGTACCA +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLWRMG*SDASVP
Trigger: TGGTACAGAAGCATCCGACCACCCCATCCTCCACAG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATGGCAAACATCTCCTTaGGGATGCCACTGCAGCACT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKWQTSP*GCHCST
Trigger: AGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTCAAAGCTGTCACTTaGGGACTTGGCTGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLKAVT*GLGCGG
Trigger: TCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTACTCTGAGCAGATATTaGAGTTGGTTTGTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVTLSRY*SWFVCL
Trigger: GAGACAGACAAACCAACTGCAATATCTGCTCAGAGT...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGTCGTCCTCTTCCTTTTaGCTGGACTATCATGATCTC +
Preference number: 4 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMSSSSF*LDYHDL
Trigger: GAGATCATGATAGTCCAGGCAAAAGGAAGAGGACGA...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGGTGTTTTTGGCTCCTaGTTCTGTTTGTCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIGVFGS*FCLSLS
Trigger: TGACAAGGACAAACAGAAGCAGGAGCCAAAAACACC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGATGCGTTGTAGACATTTaGGAGGTTTCTAGTCCATCC +
Preference number: 4 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRCVVDI*EVSSPS
Trigger: GGATGGACTAGAAACCTCCCAAATGTCTACAACGCA...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATTTGTCTTCACAGGCTaGGGGGTGGTCGCAATGATG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKFVFTG*GVVAMM
Trigger: CATCATTGCGACCACCCCCCAGCCTGTGAAGACAAA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGAGCTCATCAGGCATCTTaGCAAAGCGCATTTCAAACA +
Preference number: 4 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRAHQAS*QSAFQT
Trigger: TGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGC...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTTCTCCTCATAAGACATaGGCTTACACTTATCCTCCT +
Preference number: 4 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVSPHKT*AYTYPP
Trigger: AGGAGGATAAGTGTAAGCCCATGTCTTATGAGGAGA...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 72 bp TATGGTCTATTCTTGCCTCAACAGCTGCTGTCATTATaGGAAGCTAAAGATGAGGATGGCCGTGATGGCAAC +
Preference number: 4 (lower is better)
Translates to: YGLFLPQQLLSL*EAKDEDGRDGN
Trigger: GTTGCCATCACGGCCATCCTCATCTTTAGCTTCCAATAATGACAGCAGCTGTTGAGGCAAGAATAGACCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 72 bp CAGGCACAGGCCAAAGGGCAGCTCAAAATAGTACATTaGGCAAAAGGAGCTATCTTGAAGATAGAGACACAC +
Preference number: 4 (lower is better)
Translates to: QAQAKGQLKIVH*AKGAILKIETH
Trigger: GTGTGTCTCTATCTTCAAGATAGCTCCTTTTGCCAAATGTACTATTTTGAGCTGCCCTTTGGCCTGTGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 72 bp ACTGTAACAACTGGCTCTTCAGGCTCATCAGGCATCTaGGCAAAGCGCATTTCAAACACATCCTGGAGTTTT +
Preference number: 4 (lower is better)
Translates to: TVTTGSSGSSGI*AKRISNTSWSF
Trigger: AAAACTCCAGGATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGTTACAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR TCA 90 bp TCCAGGGTACCAAGTACAACCTTTAAGCCTAAAGATCTTTCAAGTTCAACAGGTGGTCTGCGGAGAAGTTaGTGCTTGAGTTGTGTTTGG +
Preference number: 4 (lower is better)
Translates to: SRVPSTTFKPKDLSSSTGGLRRS*CLSCVW
Trigger: CCAAACACAACTCAAGCATCAACTTCTCCGCAGACC...ACCTGTTGAACTTGAAAGATCTTTAGGCTTAAAGGTTGTACTTGGTACCCTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACCTTATCCTCCTCTTCTaGTTCATATGTGGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLILLF*FICGRR
Trigger: CCGCCTCCCACATATGAATCAGAAGAGGAGGATAAG...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTCCGACTCAGAGGATaGGAATCCCTTCATCTTGGA +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLRLRG*ESLHLG
Trigger: TCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCGAATGATTGGTGAGTaGATCTTCTCCTCCTTTACT +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIRMIGE*IFSSFT
Trigger: AGTAAAGGAGGAGAAGATTCACTCACCAATCATTCG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAAGGGGTGGTGGTATCTaGTTTCCTCTTCACCCCTTT +
Preference number: 4 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGRGGGI*FPLHPF
Trigger: AAAGGGGTGAAGAGGAAAGCAGATACCACCACCCCT...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAAGGGGTGGTGGTATCTaGTTTCCTCTTCACCCCTTT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKRGGGI*FPLHPF
Trigger: AAAGGGGTGAAGAGGAAAGCAGATACCACCACCCCT...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTGCAGCACTTTAGCTaGTCAGAGATCTTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLQHFS*SEILLL
Trigger: GAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATTCTTTGGTTTGTTCTaGTGGGGCTGTGAGAGGGCT +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKFFGLF*WGCERA
Trigger: AGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACCCTTCTTGCTCACATTaGTGTTGCTGCTGTTATTTT +
Preference number: 4 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHPSCSH*CCCCYF
Trigger: AAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGG...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp TGGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTGGAACTGAAGACCGTTTTATCCATCCCCCATTACTaGCAGATTTCTCAATCTTGT +
Preference number: 4 (lower is better)
Translates to: WDLSYSSLGRNLELKTVLSIPHY*QISQSC
Trigger: ACAAGATTGAGAAATCTGCCAGTAATGGGGGATGGA...TAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGATCAGCACCAAATTCCTaGGCATCTCTGTACTCTCGG +
Preference number: 4 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGSAPNS*ASLYSR
Trigger: CCGAGAGTACAGAGATGCCCAGGAATTTGGTGCTGA...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTAGAATCCCTTCATCTTaGAAGAACCAGCAATCACGT +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIRIPSS*KNQQSR
Trigger: ACGTGATTGCTGGTTCTTCCAAGATGAAGGGATTCT...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACATGGGCTGGGTGAAGTaGCCAATAGGGTCAAAGACA +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYMGWVK*PIGSKT
Trigger: TGTCTTTGACCCTATTGGCCACTTCACCCAGCCCAT...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
3UTR CAA 72 bp CAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTaGAATATGGAAACTCTGGAATCTGGGAAGGTACTT +
Preference number: 4 (lower is better)
Translates to: QRSYQIEGSKQP*NMETLESGKVL
Trigger: AAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR TCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTGGAACTGTGGCATCTaGGGGGAATGTATCATAAGC +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYWNCGI*GECIIS
Trigger: GCTTATGATACATTCCCCTCAGATGCCACAGTTCCA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR TCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACAAGGCTCGCTGCGAATaGTTGGTGAGTGAATCTTCT +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYKARCE*LVSESS
Trigger: AGAAGATTCACTCACCAATCATTCGCAGCGAGCCTT...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLCLVP*IHQALL
Trigger: CAGCAAAGCCTGGTGTATCCACGGTACCAAACACAA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGATGCTTGAGTTGTGTTTaGTACCGTGGATACACCAGG +
Preference number: 4 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGCLSCV*YRGYTR
Trigger: CCTGGTGTATCCACGGTACCAAACACAACTCAAGCA...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTGCTTGAGTTGTGTTTaGTACCGTGGATACACCAGG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYCLSCV*YRGYTR
Trigger: CCTGGTGTATCCACGGTACCAAACACAACTCAAGCA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGGTCTTCGTGGGTACTaGTTCCTTCTTGCTCACATT +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYGLRGY*FLLAHI
Trigger: AATGTGAGCAAGAAGGAACCAGTACCCACGAAGACC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR GCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATCGTCCTCTTCCTTTTaGCTGGACTATCATGATCTC +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKSSSSF*LDYHDL
Trigger: GAGATCATGATAGTCCAGGCAAAAGGAAGAGGACGA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACAAAGGCCACGCAAACTaGTGTTTCCATAGTGTCTTG +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYKGHAN*CFHSVL
Trigger: CAAGACACTATGGAAACACCAGTTTGCGTGGCCTTT...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGCTCATCAGGCATCTTaGCAAAGCGCATTTCAAACA +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKAHQAS*QSAFQT
Trigger: TGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTTCTCCTTTTTCTTTaGTTTGTTCTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLLLFL*FVLLGL
Trigger: CAGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTTTTTCTTTGTCTTTTTaGGAGGAAGTTCCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVFSLSF*EEVPWF
Trigger: AAACCAAGGAACTTCCTCCCAAAAAGACAAAGAAAA...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
3UTR CAA 72 bp CAGCTCAAAATAGTACATTTGGCAAAAGGAGCTATCTaGAAGATAGAGACACACACAGAGGACTTGGAATGG +
Preference number: 4 (lower is better)
Translates to: QLKIVHLAKGAI*KIETHTEDLEW
Trigger: CCATTCCAAGTCCTCTGTGTGTGTCTCTATCTTCAAGATAGCTCCTTTTGCCAAATGTACTATTTTGAGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CCA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTTTTCTTTGTCTTTTTaGGAGGAAGTTCCTTGGTTT +
Preference number: 4 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIFSLSF*EEVPWF
Trigger: AAACCAAGGAACTTCCTCCCAAAAAGACAAAGAAAA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CCA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACAGAATCCCTTCATCTTaGAAGAACCAGCAATCACGT +
Preference number: 4 (lower is better)
Translates to: TKICQLCSLYSTATVTHYRIPSS*KNQQSR
Trigger: ACGTGATTGCTGGTTCTTCCAAGATGAAGGGATTCT...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCCCAGCTTGGCGGTCTaGGGCTCTGGGGCCAGTGAG +
Preference number: 5 (lower is better)
Translates to: AQHTGLTRYWVGASASVRPSLAV*GSGASE
Trigger: CTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTGGGCATCCCTGGCCTaGGCCCATGACTGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: AQHTGLTRYWVGASASVRWASLA*AHDWPW
Trigger: CCAGGGCCAGTCATGGGCCAAGGCCAGGGATGCCCA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp GCAGAGGCAGCGGCCACAGCAGCTGCCTGCTGCTGCTGCTGCTGCTaGTCCTGTCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGGCGC +
Preference number: 5 (lower is better)
Translates to: AEAAATAAACCCCCC*SCLCCCCCCCCSWR
Trigger: GCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCTGC
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp GGGGCAGAGGCAGCGGCCACAGCAGCTGCCTGCTGCTGCTGCTGCTaGTGCTCCTGTCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: GAEAAATAAACCCCC*CSCLCCCCCCCCSW
Trigger: CCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCTGCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp TCCCTGCGCCTCCGCTCCTGCTCTCGTTTCCGGGCCAACTCCCTCTaGTGGTCCAGCATAGACTGGGGCTGGGAGCTCTGGGCCTGGGGG +
Preference number: 5 (lower is better)
Translates to: SLRLRSCSRFRANSL*WSSIDWGWELWAWG
Trigger: CCCCCAGGCCCAGAGCTCCCAGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCAGGAGCGGAGGCGCAGGGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp TGCTGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTGCTaGTGCTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGACGTGCC +
Preference number: 5 (lower is better)
Translates to: CCCCCCSCLCCCCCC*CSWRRRASSWARRA
Trigger: GGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp GCCTGCTGCTGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTaGTGCTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGA +
Preference number: 5 (lower is better)
Translates to: ACCCCCCCSCLCCCC*CCCSWRRRASSWAR
Trigger: TCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp GCTGCCTGCTGCTGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTaGTGCTGCTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATGGGCT +
Preference number: 5 (lower is better)
Translates to: AACCCCCCCSCLCCC*CCCCSWRRRASSWA
Trigger: AGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp GCAGCTGCCTGCTGCTGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTaGTGCTGCTGCTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATGG +
Preference number: 5 (lower is better)
Translates to: AAACCCCCCCSCLCC*CCCCCSWRRRASSW
Trigger: CCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGC
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGTCAGGGAGGTTCAGCTaGACGGCATCCACGGGCTGC +
Preference number: 5 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVSGRFS*TASTGC
Trigger: GCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTGA...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS GCA 90 bp TGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTGCTGCTaGTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGACGTGCCTGT +
Preference number: 5 (lower is better)
Translates to: CCCCCSCLCCCCCCC*SWRRRASSWARRAC
Trigger: ACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp TGCTGCTGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTaGTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGACGT +
Preference number: 5 (lower is better)
Translates to: CCCCCCCSCLCCCCC*CCSWRRRASSWARR
Trigger: ACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp TGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTaGCGCCGTCGTGCCTCCTCATGGGCTCGACGTGCCTGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: CCCSCLCCCCCCCCS*RRRASSWARRACSS
Trigger: GCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp CTGCTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGACGTaGCTGTTCCAGCGCATCTTCATCCTCTCGGCTCCTCATGCGCTC +
Preference number: 5 (lower is better)
Translates to: LLLLLAPSCLLMGST*LFQRIFILSAPHAL
Trigger: GAGCGCATGAGGAGCCGAGAGGATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp TGCTGCTGCTGCTGCTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATaGGCTCGACGTGCCTGTTCCAGCGCATCTTCATCCTCTCGGCTC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCSWRRRASS*ARRACSSASSSSRL
Trigger: GAGCCGAGAGGATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCA
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCGCAGATTTCTCAATCTaGTCCCAGGGCCGCTCTCCG +
Preference number: 5 (lower is better)
Translates to: AQHTGLTRYWVGASASVRADFSI*SQGRSP
Trigger: CGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGC...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGCGCCGAGGACCCAGCTaGGCGGTCTTGGGCTCTGGG +
Preference number: 5 (lower is better)
Translates to: VACSRTSVRLAVRQMGSARRGPS*AVLGSG
Trigger: CCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCG...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCTGTCACTTGAGGACTaGGCTGTGGAGGATGGGGTG +
Preference number: 5 (lower is better)
Translates to: AQHTGLTRYWVGASASVRLSLED*AVEDGV
Trigger: CACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp CTGTCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTGGCGCCGTCGTaGCTCCTCATGGGCTCGACGTGCCTGTTCCAGCGCATCTTCATC +
Preference number: 5 (lower is better)
Translates to: LSLLLLLLLLLLAPS*LLMGSTCLFQRIFI
Trigger: GATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp GGAGGCAGCTCCGGCTGCGGCAGGTGCAAGATGGGCTGGGTGAAGTaGCCAATAGGGTCAAAGACACTGCCTGGCAGCTGTGGTTCCAGG +
Preference number: 5 (lower is better)
Translates to: GGSSGCGRCKMGWVK*PIGSKTLPGSCGSR
Trigger: CCTGGAACCACAGCTGCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGGAGCTGCCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGTCAGGGAGGTTCAGCTaGACGGCATCCACGGGCTGC +
Preference number: 5 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRSGRFS*TASTGC
Trigger: GCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTGA...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCTGGATACACCAGGCTTaGCTGCCCCTGTTTCTTTCC +
Preference number: 5 (lower is better)
Translates to: AQHTGLTRYWVGASASVRWIHQA*LPLFLS
Trigger: GGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCCA...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121285.8
CDS CCA 90 bp GGTAGGCTTTGGGGGCAGAGCAGCAGCTCGGTTACTGGGCCGAGATaGCTGTTGGGGCAGCGCATTGTGCAAAGCTGGAGGAGAGACCAC +
Preference number: 5 (lower is better)
Translates to: GRLWGQSSSSVTGPR*LLGQRIVQSWRRDH
Trigger: GTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCAAAGCCTACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGCAAAGGCGGTGGGGGTaGGGACTGCACCTTCACGGA +
Preference number: 5 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAQRRWG*GLHLHG
Trigger: TCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTTG...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGTGATGCTGGATGACTaGCTGGGGCTTGGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRVMLDD*LGLGRL
Trigger: CAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCAC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGGGCTCCTGCTTCTGTTaGTCCTTGTCAGGGGCCCCT +
Preference number: 5 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRGSCFC*SLSGAP
Trigger: AGGGGCCCCTGACAAGGACAAACAGAAGCAGGAGCC...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 90 bp GCAGCGCATTGTGCAAAGCTGGAGGAGAGACCACAGCATGCTGGTTaGGATGGGGTGGAGTGCTGTGCTCAGGTGGCTGGGGCAGGTGAG +
Preference number: 5 (lower is better)
Translates to: AAHCAKLEERPQHAG*DGVECCAQVAGAGE
Trigger: CTCACCTGCCCCAGCCACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp TTTGGGGGCAGAGCAGCAGCTCGGTTACTGGGCCGAGATGGCTGTTaGGGCAGCGCATTGTGCAAAGCTGGAGGAGAGACCACAGCATGC +
Preference number: 5 (lower is better)
Translates to: FGGRAAARLLGRDGC*GSALCKAGGETTAC
Trigger: GCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TGCTGCTCTCCCGCCGAGGACCCAGCTTGGCGGTCTTGGGCTCTGGGGCCAGTGTGTTTCCATAGTGTCTaGAGCACCACTCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: CCSPAEDPAWRSWALGPVCFHSV*STTLSR
Trigger: TCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACA...CACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCGGGAGAGCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp GCGCAGCACACTGGTCTCACCAGGTACTGGGTGGGGGCCTCCGCCTCGGTTCGCCCAAGCGCTTCTTTATaGTTCCCATATCCATGGGTG +
Preference number: 5 (lower is better)
Translates to: AQHTGLTRYWVGASASVRPSASL*FPYPWV
Trigger: CACCCATGGATATGGGAACAATAAAGAAGCGCTTGG...GCGAACCGAGGCGGAGGCCCCCACCCAGTACCTGGTGAGACCAGTGTGCTGCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGACCACAGCATGCTGGTaGAGATGGGGTGGAGTGCTG +
Preference number: 5 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRTTACW*RWGGVL
Trigger: CAGCACTCCACCCCATCTCAACCAGCATGCTGTGGT...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGTGATGCTGGATGACTaGCTGGGGCTTGGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLVMLDD*LGLGRL
Trigger: CAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCAC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTGGGCATCCCTGGCCTaGGCCCATGACTGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAWASLA*AHDWPW
Trigger: CCAGGGCCAGTCATGGGCCAAGGCCAGGGATGCCCA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp GCGGTGGGGGTTGGGACTGCACCTTCACGGAAGGGAGTAGTGGTGTaGGAGGCTGCACCTTCTGCAGCTGCTGTAGGTACAACTGCATCT +
Preference number: 5 (lower is better)
Translates to: AVGVGTAPSRKGVVV*EAAPSAAAVGTTAS
Trigger: AGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp CAGCACGGCGGAAATGCTCAAAGCTGTCACTTGAGGACTTGGCTGTaGAGGATGGGGTGGTCGGATGCTTCTGTACCAGGCTGGCCCAGG +
Preference number: 5 (lower is better)
Translates to: QHGGNAQSCHLRTWL*RMGWSDASVPGWPR
Trigger: CCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp CCCGAGCAGCACGGCGGAAATGCTCAAAGCTGTCACTTGAGGACTTaGCTGTGGAGGATGGGGTGGTCGGATGCTTCTGTACCAGGCTGG +
Preference number: 5 (lower is better)
Translates to: PEQHGGNAQSCHLRT*LWRMGWSDASVPGW
Trigger: CCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCAGATTTCTCAATCTaGTCCCAGGGCCGCTCTCCG +
Preference number: 5 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLADFSI*SQGRSP
Trigger: CGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TGGGGCTACCACCTTTGTAGGGGGTGGCACTGCAGGAGAGGACACTGTAACAACTCAGGGAGGTTCAGCTaGACGGCATCCACGGGCTGC +
Preference number: 5 (lower is better)
Translates to: WGYHLCRGWHCRRGHCNNSGRFS*TASTGC
Trigger: GCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTGA...GTTGTTACAGTGTCCTCTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR CAA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTCCCAGCTTGGCGGTCTaGGGCTCTGGGGCCAGTGAG +
Preference number: 5 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCPSLAV*GSGASE
Trigger: CTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGG...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGGGTGGGTGAGTAGGTaGCTGTCCTGGGGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAGWVSR*LSWGWW
Trigger: CCACCACCCCCAGGACAGCAACCTACTCACCCACCC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp TTCACGGAAGGGAGTAGTGGTGTGGGAGGCTGCACCTTCTGCAGCTaGTGTAGGTACAACTGCATCTGCATGGAGGTGAGGGGTGGGGCA +
Preference number: 5 (lower is better)
Translates to: FTEGSSGVGGCTFCS*CRYNCICMEVRGGA
Trigger: TGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp AGGGCCTTTTCCCTCTCCTCCTTCTCCCGAGCAGCACGGCGGAAATaGTCAAAGCTGTCACTTGAGGACTTGGCTGTGGAGGATGGGGTG +
Preference number: 5 (lower is better)
Translates to: RAFSLSSFSRAARRK*SKLSLEDLAVEDGV
Trigger: CACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAGAGGGAAAAGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp TCTGGGGGTGGAGGATTGGTGCTGGCTGCATTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTAGACATTTGGGAGGTTTCTAGTCCA +
Preference number: 5 (lower is better)
Translates to: SGGGGLVLAAFAGWG*AWACVVDIWEVSSP
Trigger: TGGACTAGAAACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
ENSMUST00000125899.2
ENSMUST00000127893.8
ENSMUST00000235598.2
ENSMUST00000237008.2
ENSMUST00000237692.2
CDS-3UTR CAA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCCCCAGCTTGGCGGTCTaGGGCTCTGGGGCCAGTGAG +
Preference number: 5 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLIPSLAV*GSGASE
Trigger: CTCACTGGCCCCAGAGCCCAAGACCGCCAAGCTGGG...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTGGAGGCTGGTGTTGTaGCTGGGGTGGTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPWRLVL*LGWWLW
Trigger: CCACAGCCACCACCCCAGCAACAACACCAGCCTCCA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGCTCAAAGCTGTCACTaGAGGACTTGGCTGTGGAGG +
Preference number: 5 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLAQSCH*RTWLWR
Trigger: CCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 90 bp CTCCTTCTCCCGAGCAGCACGGCGGAAATGCTCAAAGCTGTCACTTaGGGACTTGGCTGTGGAGGATGGGGTGGTCGGATGCTTCTGTAC +
Preference number: 5 (lower is better)
Translates to: LLLPSSTAEMLKAVT*GLGCGGWGGRMLLY
Trigger: GTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTATTTGCTGGCTGGGGTaGGGCCTGGGCCTGCGTTGT +
Preference number: 5 (lower is better)
Translates to: AAAASTAAPNTMDGESTFICWLG*GLGLRC
Trigger: ACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAAT...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGGTCTGTCTCTTGGGCTaGTTAGGGTTGGAGGTCTCT +
Preference number: 5 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAVCLLG*LGLEVS
Trigger: AGAGACCTCCAACCCTAACAAGCCCAAGAGACAGAC...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGGTCTGTCTCTTGGGCTaGTTAGGGTTGGAGGTCTCT +
Preference number: 5 (lower is better)
Translates to: VRYILLWRLHRSAALPPRVCLLG*LGLEVS
Trigger: AGAGACCTCCAACCCTAACAAGCCCAAGAGACAGAC...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACTCAGGGAGGTTCAGCTaGACGGCATCCACGGGCTGC +
Preference number: 5 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYSGRFS*TASTGC
Trigger: GCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTGA...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGCTCCTGCTTCTGTTaGTCCTTGTCAGGGGCCCCT +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGSCFC*SLSGAP
Trigger: AGGGGCCCCTGACAAGGACAAACAGAAGCAGGAGCC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 90 bp GGTCGAAGTGAGGTGCTGAAAGGCTCGCTGCGAATGATTGGTGAGTaGATCTTCTCCTCCTTTACTACCACCAGGGGCTGGGGCTGGACG +
Preference number: 5 (lower is better)
Translates to: GRSEVLKGSLRMIGE*IFSSFTTTRGWGWT
Trigger: CGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGAGAAGATTCACTCACCAATCATTCGCAGCGAGCCTTTCAGCACCTCACTTCGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
ENSMUST00000230858.2
CDS CCA 90 bp CAGTTGGTTTGTCTGTCTCTTGGGCTTGTTAGGGTTGGAGGTCTCTaGGGGTGGAGGATTGGTGCTGGCTGCATTTGCTGGCTGGGGTTG +
Preference number: 5 (lower is better)
Translates to: QLVCLSLGLVRVGGL*GWRIGAGCICWLGL
Trigger: CAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGACAGACAAACCAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
ENSMUST00000125899.2
ENSMUST00000127893.8
ENSMUST00000235598.2
ENSMUST00000237008.2
ENSMUST00000237692.2
CDS CCA 90 bp AATATGAGCAGAAAAGGGCATGGATGGCAAGTGAACTGGTCGTGGTaGAGGCTGGTGTTGTTGCTGGGGTGGTGGCTGTGGCTGAGGAGG +
Preference number: 5 (lower is better)
Translates to: NMSRKGHGWQVNWSW*RLVLLLGWWLWLRR
Trigger: CCTCCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCTCATATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp CTGAATATGAGCAGAAAAGGGCATGGATGGCAAGTGAACTGGTCGTaGTGGAGGCTGGTGTTGTTGCTGGGGTGGTGGCTGTGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: LNMSRKGHGWQVNWS*WRLVLLLGWWLWLR
Trigger: CCTCAGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCTCATATTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp AATGCTCAAAGCTGTCACTTGAGGACTTGGCTGTGGAGGATGGGGTaGTCGGATGCTTCTGTACCAGGCTGGCCCAGGAGCCCATGTTCT +
Preference number: 5 (lower is better)
Translates to: NAQSCHLRTWLWRMG*SDASVPGWPRSPCS
Trigger: AGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCATTTGCTGGCTGGGGTaGGGCCTGGGCCTGCGTTGT +
Preference number: 5 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLIICWLG*GLGLRC
Trigger: ACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAAT...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GAAACTAGGTGTGTGCTGCTGGACATGACTAATCCACCCCAGGGGATAGGCCCATCTGGGGGTGGAGGATaGGTGCTGGCTGCATTTGCT +
Preference number: 5 (lower is better)
Translates to: ETRCVLLDMTNPPQGIGPSGGGG*VLAAFA
Trigger: AGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGA...TGGGCCTATCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACACACCTAGTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCTCAGGGAGGTTCAGCTaGACGGCATCCACGGGCTGC +
Preference number: 5 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLISGRFS*TASTGC
Trigger: GCAGCCCGTGGATGCCGTCAAGCTGAACCTCCCTGA...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp AAGTCAGTGCCAGCAAGGGGTGGGCCAGTGCCTTGCTGCTCCAGTCCACACAGGATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAG +
Preference number: 5 (lower is better)
Translates to: KSVPARGGPVPCCSSPHRMLELC*VPWIHQ
Trigger: CTGGTGTATCCACGGTACCAAACACAACTCAAGCAT...CCTGTGTGGACTGGAGCAGCAAGGCACTGGCCCACCCCTTGCTGGCACTGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGACCACAGCATGCTGGTaGAGATGGGGTGGAGTGCTG +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPTTACW*RWGGVL
Trigger: CAGCACTCCACCCCATCTCAACCAGCATGCTGTGGT...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGTGCCACTGGTGTTTTaGGCTCCTGCTTCTGTTTGT +
Preference number: 5 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLVPLVF*APASVC
Trigger: ACAAACAGAAGCAGGAGCCAAAAACACCAGTGGCAC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACTCTGGGGGTGGAGGATaGGTGCTGGCTGCATTTGCT +
Preference number: 5 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYSGGGG*VLAAFA
Trigger: AGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGA...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTTCTGGGGGTGGAGGATaGGTGCTGGCTGCATTTGCT +
Preference number: 5 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCSGGGG*VLAAFA
Trigger: AGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGA...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTCCGGTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGCCAAGCGCTTCTTTATaGTTCCCATATCCATGGGTG +
Preference number: 5 (lower is better)
Translates to: VRYILLWRLHRSAALPPRPSASL*FPYPWV
Trigger: CACCCATGGATATGGGAACAATAAAGAAGCGCTTGG...CCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGAGCTGCTCAGAGATCTaGCTGCTCTTCTCTGGCCCT +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPSCSEI*LLFSGP
Trigger: AGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCT...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCTCCTTTTTCTTTGGTTaGTTCTGCTGGGGCTGTGAG +
Preference number: 5 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLSFFFG*FCWGCE
Trigger: CTCACAGCCCCAGCAGAACAAACCAAAGAAAAAGGA...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACTGTTGGGGCAGCGCATaGTGCAAAGCTGGAGGAGAG +
Preference number: 5 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYCWGSA*CKAGGE
Trigger: CTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACA...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCCTTAGGCTGGACGTTTaGCTGGGGAGGAGACTGATG +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGALRLDV*LGRRLM
Trigger: CATCAGTCTCCTCCCCAGCAAAACGTCCAGCCTAAG...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 90 bp AAGCTGTCACTTGAGGACTTGGCTGTGGAGGATGGGGTGGTCGGATaGTTCTGTACCAGGCTGGCCCAGGAGCCCATGTTCTTAATTTTC +
Preference number: 5 (lower is better)
Translates to: KLSLEDLAVEDGVVG*FCTRLAQEPMFLIF
Trigger: GAAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTAATTTGCTGGCTGGGGTaGGGCCTGGGCCTGCGTTGT +
Preference number: 5 (lower is better)
Translates to: EQRSKAEFCIVSPSRVVLICWLG*GLGLRC
Trigger: ACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAAT...TAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp TCTCCAGGCTACCCATCTCTTCTGGGCAATTTTACCCACTACACGAGCAGAGGTTCTGGGGGTGGAGGATaGGTGCTGGCTGCATTTGCT +
Preference number: 5 (lower is better)
Translates to: SPGYPSLLGNFTHYTSRGSGGGG*VLAAFA
Trigger: AGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGA...ACCTCTGCTCGTGTAGTGGGTAAAATTGCCCAGAAGAGATGGGTAGCCTGGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGTCTGTCTCTTGGGCTaGTTAGGGTTGGAGGTCTCT +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAVCLLG*LGLEVS
Trigger: AGAGACCTCCAACCCTAACAAGCCCAAGAGACAGAC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TTCCTGGAGTTCAGCCAGCCGCTGGGCTCGCTCTTCCTCAGAGTCGTCAGTGGACACTCTGAGCAGATATaGCAGTTGGTTTGTCTGTCT +
Preference number: 5 (lower is better)
Translates to: FLEFSQPLGSLFLRVVSGHSEQI*QLVCLS
Trigger: AGACAGACAAACCAACTGCAATATCTGCTCAGAGTG...TCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCCAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125899.2
CDS-3UTR CAA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCTTGGCAAACATCTCCTaGAGGATGCCACTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSLANIS*RMPLQH
Trigger: GTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAA...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCTTAGGCTGGACGTTTaGCTGGGGAGGAGACTGATG +
Preference number: 5 (lower is better)
Translates to: AAAASTAAPNTMDGESTFLRLDV*LGRRLM
Trigger: CATCAGTCTCCTCCCCAGCAAAACGTCCAGCCTAAG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGCTCAAAGCTGTCACTaGAGGACTTGGCTGTGGAGG +
Preference number: 5 (lower is better)
Translates to: AAAASTAAPNTMDGESTFAQSCH*RTWLWR
Trigger: CCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGGAGAAGTTGATGCTTGAGTTGTGTTTGGTACCGTGGATACACCAGGCTTTGGCAGATTTCTCAATCTaGTCCCAGGGCCGCTCTCCG +
Preference number: 5 (lower is better)
Translates to: AEKLMLELCLVPWIHQALADFSI*SQGRSP
Trigger: CGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGC...CAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTATTTGCTGGCTGGGGTaGGGCCTGGGCCTGCGTTGT +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIICWLG*GLGLRC
Trigger: ACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAAT...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCGGAGAAGTTGATGCTTGAGTTGTGTTTGGTACCGTGGATACACCAGGCTTTGTCTGGGGGTGGAGGATaGGTGCTGGCTGCATTTGCT +
Preference number: 5 (lower is better)
Translates to: AEKLMLELCLVPWIHQALSGGGG*VLAAFA
Trigger: AGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGA...CAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp GTACATCCTTCTTTGGAGGCTTCACAGGTCTGCTGCTCTCCCGCCGAGGACCCACACTCTGAGCAGATATaGCAGTTGGTTTGTCTGTCT +
Preference number: 5 (lower is better)
Translates to: VHPSLEASQVCCSPAEDPHSEQI*QLVCLS
Trigger: AGACAGACAAACCAACTGCAATATCTGCTCAGAGTG...TGGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGACGCCGAGGACCCAGCTaGGCGGTCTTGGGCTCTGGG +
Preference number: 5 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGRRGPS*AVLGSG
Trigger: CCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCG...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACGCCGAGGACCCAGCTaGGCGGTCTTGGGCTCTGGG +
Preference number: 5 (lower is better)
Translates to: ALFPFAQANTYKERLSIKRRGPS*AVLGSG
Trigger: CCCAGAGCCCAAGACCGCCAAGCTGGGTCCTCGGCG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTCCTTCTTGCTCACATaGCTGTTGCTGCTGTTATTT +
Preference number: 5 (lower is better)
Translates to: VACSRTSVRLAVRQMGSASFLLT*LLLLLF
Trigger: AAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGGGTACTGGTTCCTTCTaGCTCACATTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPGTGSF*LTLLLL
Trigger: CAGCAACAGCAATGTGAGCAAGAAGGAACCAGTACC...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGCCGCTCGTCAACTTTTTCAGCTaGAGGTTTCCTTTTCTTCCG +
Preference number: 5 (lower is better)
Translates to: IQYSHSHTLPTAQWEPPLVNFFS*RFPFLP
Trigger: CGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGAC...GAGCGGCGGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCAAAGGCGGTGGGGGTaGGGACTGCACCTTCACGGA +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIQRRWG*GLHLHG
Trigger: TCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTTG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGATTTTCAGGTCCTTTTaGGGTGCCACTGGTGTTTTT +
Preference number: 5 (lower is better)
Translates to: VACSRTSVRLAVRQMGSAIFRSF*GATGVF
Trigger: AAAAACACCAGTGGCACCCAAAAAGGACCTGAAAAT...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp TCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTTGGTACCGTaGATACACCAGGCTTTGCTGCCCTACCTGTTTCTTTCCTCCCTC +
Preference number: 5 (lower is better)
Translates to: SGSAEKLMLELCLVP*IHQALLPYLFLSSL
Trigger: GAGGGAGGAAAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003726.16
CDS CCA 90 bp ACTTGGGAGCCATCTCTGTTTCAGAGTCTTCACTGTCAGAGGAGCTaGATTCGCTGGTGCTCTCCGACTCAGAGGATGAGAATCCCTTCA +
Preference number: 5 (lower is better)
Translates to: TWEPSLFQSLHCQRS*IRWCSPTQRMRIPS
Trigger: TGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAACAGAGATGGCTCCCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp CAGGACCTGTTTCAGAGTCTTCACTGTCAGAGGAGCTGGATTCGCTaGTGCTCTCCGACTCAGAGGATGAGAATCCCTTCATCTTGGAAG +
Preference number: 5 (lower is better)
Translates to: QDLFQSLHCQRSWIR*CSPTQRMRIPSSWK
Trigger: CTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAACAGGTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp AGTAGCCATGTAATTTTTCTTGCCCACTTCCCAGATCCTGACCTGGTTTGGCAGGCAGATTTCTCAATCTaGTCCCAGGGCCGCTCTCCG +
Preference number: 5 (lower is better)
Translates to: SSHVIFLAHFPDPDLVWQADFSI*SQGRSP
Trigger: CGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGC...CTGCCAAACCAGGTCAGGATCTGGGAAGTGGGCAAGAAAAATTACATGGCTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGTGTTTCCATAGTGTCTaGAGCACCACTCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPCFHSV*STTLSR
Trigger: TCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACA...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGCCTTCTCCTTTTTCTTaGGTTTGTTCTGCTGGGGCT +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPPSPFS*VCSAGA
Trigger: AGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAGG...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCCCTTCTCCTTTTTCTTaGGTTTGTTCTGCTGGGGCT +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGAPSPFS*VCSAGA
Trigger: AGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAGG...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGCTTCTGTTTGTCCTaGTCAGGGGCCCCTGGTGGG +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQICFCLS*SGAPGG
Trigger: CCCACCAGGGGCCCCTGACAAGGACAAACAGAAGCA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 90 bp CCGCTTCTCCTCATAAGACATGGGCTTACACTTATCCTCCTCTTCTaGTTCATATGTGGGAGGCGGCTTGGTCTTCGTGGGTACTGGTTC +
Preference number: 5 (lower is better)
Translates to: PLLLIRHGLTLILLF*FICGRRLGLRGYWF
Trigger: GAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATGAGGAGAAGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS GCA 90 bp GACCTGTTTCAGAGTCTTCACTGTCAGAGGAGCTGGATTCGCTGGTaGTCTCCGACTCAGAGGATGAGAATCCCTTCATCTTGGAAGAAC +
Preference number: 5 (lower is better)
Translates to: DLFQSLHCQRSWIRW*SPTQRMRIPSSWKN
Trigger: GTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAACAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS CCA 90 bp CCATCTCTGTTTCAGAGTCTTCACTGTCAGAGGAGCTGGATTCGCTaGTGCTCTCCGACTCAGAGGATGAGAATCCCTTCATCTTGGAAG +
Preference number: 5 (lower is better)
Translates to: PSLFQSLHCQRSWIR*CSPTQRMRIPSSWK
Trigger: CTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAACAGAGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCCAAGCGCTTCTTTATaGTTCCCATATCCATGGGTG +
Preference number: 5 (lower is better)
Translates to: AAAASTAAPNTMDGESTFPSASL*FPYPWV
Trigger: CACCCATGGATATGGGAACAATAAAGAAGCGCTTGG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCGGCTCATCAGGCATCTaGGCAAAGCGCATTTCAAAC +
Preference number: 5 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLIGSSGI*AKRISN
Trigger: GTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCC...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACTCCTTTTTCTTTGGTTaGTTCTGCTGGGGCTGTGAG +
Preference number: 5 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYSFFFG*FCWGCE
Trigger: CTCACAGCCCCAGCAGAACAAACCAAAGAAAAAGGA...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTGGCATGTAGTAGGACGTCTGTCCGGCTGGCTGTAAGGCAGATGGGCTCTGCGTTGCTCACATTGCTGTaGCTGCTGTTATTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: VACSRTSVRLAVRQMGSALLTLL*LLLFFF
Trigger: AAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAA...CGCAGAGCCCATCTGCCTTACAGCCAGCCGGACAGACGTCCTACTACATGCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GAGAATTCAGGAGGCTACGTGCCAGGTAAAGCTGGTCACAGCTTCCATCTGATCGGTACTGGTTCCTTCTaGCTCACATTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: ENSGGYVPGKAGHSFHLIGTGSF*LTLLLL
Trigger: CAGCAACAGCAATGTGAGCAAGAAGGAACCAGTACC...GATCAGATGGAAGCTGTGACCAGCTTTACCTGGCACGTAGCCTCCTGAATTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTGTTGGGGCAGCGCATaGTGCAAAGCTGGAGGAGAG +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQICWGSA*CKAGGE
Trigger: CTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGGGTGGGTGAGTAGGTaGCTGTCCTGGGGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: TKICQLCSLYSTATVTHYGWVSR*LSWGWW
Trigger: CCACCACCCCCAGGACAGCAACCTACTCACCCACCC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 90 bp ACTGTCAGAGGAGCTGGATTCGCTGGTGCTCTCCGACTCAGAGGATaGGAATCCCTTCATCTTGGAAGAACCAGCAATCACGTCAACTTT +
Preference number: 5 (lower is better)
Translates to: TVRGAGFAGALRLRG*ESLHLGRTSNHVNF
Trigger: AAAGTTGACGTGATTGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS GCA 90 bp TCTCTGTTTCAGAGTCTTCACTGTCAGAGGAGCTGGATTCGCTGGTaGTCTCCGACTCAGAGGATGAGAATCCCTTCATCTTGGAAGAAC +
Preference number: 5 (lower is better)
Translates to: SLFQSLHCQRSWIRW*SPTQRMRIPSSWKN
Trigger: GTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAACAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp GCTTACACTTATCCTCCTCTTCTGATTCATATGTGGGAGGCGGCTTaGTCTTCGTGGGTACTGGTTCCTTCTTGCTCACATTGCTGTTGC +
Preference number: 5 (lower is better)
Translates to: AYTYPPLLIHMWEAA*SSWVLVPSCSHCCC
Trigger: GCAACAGCAATGTGAGCAAGAAGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CAGCAAGCAACCCTTGAATATGGAAACTCTGGAATCTGGGAAGGTACTTGGCACGTCTGTCTCTTGGGCTaGTTAGGGTTGGAGGTCTCT +
Preference number: 5 (lower is better)
Translates to: QQATLEYGNSGIWEGTWHVCLLG*LGLEVS
Trigger: AGAGACCTCCAACCCTAACAAGCCCAAGAGACAGAC...GTGCCAAGTACCTTCCCAGATTCCAGAGTTTCCATATTCAAGGGTTGCTTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTAGTCTGTCTCTTGGGCTaGTTAGGGTTGGAGGTCTCT +
Preference number: 5 (lower is better)
Translates to: EQRSKAEFCIVSPSRVVLVCLLG*LGLEVS
Trigger: AGAGACCTCCAACCCTAACAAGCCCAAGAGACAGAC...TAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp CATGTTCTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTCACTCTGAGCAGATATaGCAGTTGGTTTGTCTGTCT +
Preference number: 5 (lower is better)
Translates to: HVLRDRKPVSVAAATMSCHSEQI*QLVCLS
Trigger: AGACAGACAAACCAACTGCAATATCTGCTCAGAGTG...ACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAGAACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGAAGCTGCTCAGAGATCTaGCTGCTCTTCTCTGGCCCT +
Preference number: 5 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRSCSEI*LLFSGP
Trigger: AGGGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCT...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCGACTCTAGTTTAGACTaGATTGTGCTCATGTCCATG +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGADSSLD*IVLMSM
Trigger: CATGGACATGAGCACAATCAAGTCTAAACTAGAGTC...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTCCTTCTTGCTCACATaGCTGTTGCTGCTGTTATTT +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGASFLLT*LLLLLF
Trigger: AAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GTTCACTATACAGTACAGCCACAGTCACACACTACCCACAGCGCAGTGGGAGCCTCACCAGGAAGTTTGTaGATATCTAGACTTAGCTGC +
Preference number: 5 (lower is better)
Translates to: VHYTVQPQSHTTHSAVGASPGSL*ISRLSC
Trigger: GCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGA...GGCTCCCACTGCGCTGTGGGTAGTGTGTGACTGTGGCTGTACTGTATAGTGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATGGAGGCTGGTGTTGTaGCTGGGGTGGTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: ALFPFAQANTYKERLSIKWRLVL*LGWWLW
Trigger: CCACAGCCACCACCCCAGCAACAACACCAGCCTCCA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 90 bp TATCCTCCTCTTCTGATTCATATGTGGGAGGCGGCTTGGTCTTCGTaGGTACTGGTTCCTTCTTGCTCACATTGCTGTTGCTGCTGTTAT +
Preference number: 5 (lower is better)
Translates to: YPPLLIHMWEAAWSS*VLVPSCSHCCCCCY
Trigger: ATAACAGCAGCAACAGCAATGTGAGCAAGAAGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CCA 90 bp CATAAGACATGGGCTTACACTTATCCTCCTCTTCTGATTCATATGTaGGAGGCGGCTTGGTCTTCGTGGGTACTGGTTCCTTCTTGCTCA +
Preference number: 5 (lower is better)
Translates to: HKTWAYTYPPLLIHM*EAAWSSWVLVPSCS
Trigger: TGAGCAAGAAGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTATTTGAAGCAGATTTCTCAATCTaGTCCCAGGGCCGCTCTCCG +
Preference number: 5 (lower is better)
Translates to: RSKAEFCIVSPSRVVLFEADFSI*SQGRSP
Trigger: CGGAGAGCGGCCCTGGGACAAGATTGAGAAATCTGC...TTCAAATAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp TCCTGTGTATACTGTGTAGTCAGACATTTGGCGCAGAGAAGGGCCTCTGCCCCGCAGTTCATTGATTTTTaGCAAGAAGAGCTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: SCVYCVVRHLAQRRASAPQFIDF*QEELLQ
Trigger: CTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTG...CGGGGCAGAGGCCCTTCTCTGCGCCAAATGTCTGACTACACAGTATACACAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTTTGGCAAACATCTCCTaGAGGATGCCACTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQILANIS*RMPLQH
Trigger: GTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAA...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTGACTCTAGTTTAGACTaGATTGTGCTCATGTCCATG +
Preference number: 5 (lower is better)
Translates to: AAAASTAAPNTMDGESTFDSSLD*IVLMSM
Trigger: CATGGACATGAGCACAATCAAGTCTAAACTAGAGTC...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CTCAGGGACAGAAAACCAGTCTCGGTGGCGGCAGCAACAATGTCCTGTGTATACATTTTCAGGTCCTTTTaGGGTGCCACTGGTGTTTTT +
Preference number: 5 (lower is better)
Translates to: LRDRKPVSVAAATMSCVYIFRSF*GATGVF
Trigger: AAAAACACCAGTGGCACCCAAAAAGGACCTGAAAAT...GTATACACAGGACATTGTTGCTGCCGCCACCGAGACTGGTTTTCTGTCCCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGTGGATACACCAGGCTTaGCTGCCCCTGTTTCTTTCC +
Preference number: 5 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMWIHQA*LPLFLS
Trigger: GGAAAGAAACAGGGGCAGCAAAGCCTGGTGTATCCA...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GTACTCTACAGGGAAAGTTGCCCTGTATGTATGCACGTGTGTAGACAGGGTGTTTGTTTCCATAGTGTCTaGAGCACCACTCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: VLYRESCPVCMHVCRQGVCFHSV*STTLSR
Trigger: TCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACA...AACACCCTGTCTACACACGTGCATACATACAGGGCAACTTTCCCTGTAGAGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GAGCAGAGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTATGTTTCCATAGTGTCTaGAGCACCACTCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: EQRSKAEFCIVSPSRVVLCFHSV*STTLSR
Trigger: TCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACA...TAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCTCTGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp GCTGCTGCTGCTTCCACGGCTGCCCCTAACACTATGGATGGAGAGTCAACATTTCAGTTCATTGATTTTTaGCAAGAAGAGCTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: AAAASTAAPNTMDGESTFQFIDF*QEELLQ
Trigger: CTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTG...AAATGTTGACTCTCCATCCATAGTGTTAGGGGCAGCCGTGGAAGCAGCAGCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGGCTCATCAGGCATCTaGGCAAAGCGCATTTCAAAC +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIGSSGI*AKRISN
Trigger: GTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TTCCAGCCAAGCCAAGTTCATTGGGAATACGTCAGGCACAGGCCAAAGGGCAGCTTGCTCACATTGCTGTaGCTGCTGTTATTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: FQPSQVHWEYVRHRPKGSLLTLL*LLLFFF
Trigger: AAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAA...GCTGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTGGTACTGGTTCCTTCTaGCTCACATTGCTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIGTGSF*LTLLLL
Trigger: CAGCAACAGCAATGTGAGCAAGAAGGAACCAGTACC...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAACTGTCACTTGAGGACTaGGCTGTGGAGGATGGGGTG +
Preference number: 5 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLSLED*AVEDGV
Trigger: CACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAG...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGCCAAGCGCTTCTTTATaGTTCCCATATCCATGGGTG +
Preference number: 5 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMPSASL*FPYPWV
Trigger: CACCCATGGATATGGGAACAATAAAGAAGCGCTTGG...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp AGACACACACAGAGGACTTGGAATGGCCTAAGAACTCAGCAGCAGCATCTTGGGCAGTTCATTGATTTTTaGCAAGAAGAGCTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: RHTQRTWNGLRTQQQHLGQFIDF*QEELLQ
Trigger: CTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTG...CCCAAGATGCTGCTGCTGAGTTCTTAGGCCATTCCAAGTCCTCTGTGTGTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGATCCTTTTTCTTTGGTTaGTTCTGCTGGGGCTGTGAG +
Preference number: 5 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRSFFFG*FCWGCE
Trigger: CTCACAGCCCCAGCAGAACAAACCAAAGAAAAAGGA...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp CTAAAGTCACTGCAAGGTCTGGAGTCTCAGAAAAAGATGGAAGGGACGAAGAGACCTTCTCCTTTTTCTTaGGTTTGTTCTGCTGGGGCT +
Preference number: 5 (lower is better)
Translates to: LKSLQGLESQKKMEGTKRPSPFS*VCSAGA
Trigger: AGCCCCAGCAGAACAAACCAAAGAAAAAGGAGAAGG...TCTCTTCGTCCCTTCCATCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp CAAAGCCTGCAGACCTCCTCAGGCTCTCCCTTTCTTGGTAAAAACAAACAGATTCACTCTGAGCAGATATaGCAGTTGGTTTGTCTGTCT +
Preference number: 5 (lower is better)
Translates to: QSLQTSSGSPFLGKNKQIHSEQI*QLVCLS
Trigger: AGACAGACAAACCAACTGCAATATCTGCTCAGAGTG...AATCTGTTTGTTTTTACCAAGAAAGGGAGAGCCTGAGGAGGTCTGCAGGCTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGCACTCTGAGCAGATATaGCAGTTGGTTTGTCTGTCT +
Preference number: 5 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMHSEQI*QLVCLS
Trigger: AGACAGACAAACCAACTGCAATATCTGCTCAGAGTG...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATTGGCAAACATCTCCTaGAGGATGCCACTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: ALFPFAQANTYKERLSIKLANIS*RMPLQH
Trigger: GTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AGGTCAAAAGCTGAGTTCTGTATAGTGTCTCCCTCCAGAGTCGTTCTATTTGAACCAAGCGCTTCTTTATaGTTCCCATATCCATGGGTG +
Preference number: 5 (lower is better)
Translates to: RSKAEFCIVSPSRVVLFEPSASL*FPYPWV
Trigger: CACCCATGGATATGGGAACAATAAAGAAGCGCTTGG...TTCAAATAGAACGACTCTGGAGGGAGACACTATACAGAACTCAGCTTTTGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000125899.2
ENSMUST00000235598.2
CDS-3UTR CAA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAATGGATACACCAGGCTTaGCTGCCCTACCTGTTTCTT +
Preference number: 5 (lower is better)
Translates to: ALFPFAQANTYKERLSIKWIHQA*LPYLFL
Trigger: AAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCA...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000003726.16
CDS-3UTR CAA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGGACTCTAGTTTAGACTaGATTGTGCTCATGTCCATG +
Preference number: 5 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMDSSLD*IVLMSM
Trigger: CATGGACATGAGCACAATCAAGTCTAAACTAGAGTC...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp GCACTATTCCCTTTTGCACAAGCGAACACTTATAAAGAGCGGCTCTCAATTAAAGGCTCATCAGGCATCTaGGCAAAGCGCATTTCAAAC +
Preference number: 5 (lower is better)
Translates to: ALFPFAQANTYKERLSIKGSSGI*AKRISN
Trigger: GTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCC...TTTAATTGAGAGCCGCTCTTTATAAGTGTTCGCTTGTGCAAAAGGGAATAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp TCTGAGACCCAAAGGTCATATCAGATAGAGGGCAGCAAGCAACCCTTGAATATGTCCTTCTTGCTCACATaGCTGTTGCTGCTGTTATTT +
Preference number: 5 (lower is better)
Translates to: SETQRSYQIEGSKQPLNMSFLLT*LLLLLF
Trigger: AAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGA...CATATTCAAGGGTTGCTTGCTGCCCTCTATCTGATATGACCTTTGGGTCTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp TGGGACTTAAGCTATAGCTCGCTGGGAAGGAATCTGGAACTGAAGACCGTTTTATCACCAGGAAGTTTGTaGATATCTAGACTTAGCTGC +
Preference number: 5 (lower is better)
Translates to: WDLSYSSLGRNLELKTVLSPGSL*ISRLSC
Trigger: GCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGA...TAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTGTTTCCATAGTGTCTaGAGCACCACTCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: TKICQLCSLYSTATVTHYCFHSV*STTLSR
Trigger: TCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAG +
Preference number: 5 (lower is better)
Translates to: TKICQLCSLYSTATVTHYMLELC*VPWIHQ
Trigger: CTGGTGTATCCACGGTACCAAACACAACTCAAGCAT...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAG +
Preference number: 5 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGMLELC*VPWIHQ
Trigger: CTGGTGTATCCACGGTACCAAACACAACTCAAGCAT...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTCACCAGGAAGTTTGTaGATATCTAGACTTAGCTGC +
Preference number: 5 (lower is better)
Translates to: TKICQLCSLYSTATVTHYSPGSL*ISRLSC
Trigger: GCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACGTCAACTTTTTCAGCTaGAGGTTTCCTTTTCTTCCG +
Preference number: 5 (lower is better)
Translates to: TKICQLCSLYSTATVTHYVNFFS*RFPFLP
Trigger: CGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGAC...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS-3UTR CAA 90 bp AACAAACAAACAAACGCCCCAACCTACTTTGGTTTGTTTCTGGAAAGGTTTGGAGTCAACTTTTTCAGCTaGAGGTTTCCTTTTCTTCCG +
Preference number: 5 (lower is better)
Translates to: NKQTNAPTYFGLFLERFGVNFFS*RFPFLP
Trigger: CGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGAC...TCCAAACCTTTCCAGAAACAAACCAAAGTAGGTTGGGGCGTTTGTTTGTTTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000120276.9
CDS-3UTR CAA 90 bp ACAAAGATATGCCAACTATGTTCACTATACAGTACAGCCACAGTCACACACTACTTGCTCACATTGCTGTaGCTGCTGTTATTTTTCTTT +
Preference number: 5 (lower is better)
Translates to: TKICQLCSLYSTATVTHYLLTLL*LLLFFF
Trigger: AAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAA...GTAGTGTGTGACTGTGGCTGTACTGTATAGTGAACATAGTTGGCATATCTTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp CTGCTGCTGCTGCTGCTGCTGCTCCTGGCGCCGTCGTaGCTCCTCATGGGCTCGACGTGCCTGTTCCAGCGC +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLAPS*LLMGSTCLFQR
Trigger: GCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp GGGGCAGAGGCAGCGGCCACAGCAGCTGCCTGCTGCTaGTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: GAEAAATAAACC*CCCCSCLCCCC
Trigger: GCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCTGCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp GAGGCAGCGGCCACAGCAGCTGCCTGCTGCTGCTGCTaGTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: EAAATAAACCCC*CCSCLCCCCCC
Trigger: GCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTC
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp GCAGAGGCAGCGGCCACAGCAGCTGCCTGCTGCTGCTaGTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: AEAAATAAACCC*CCCSCLCCCCC
Trigger: GCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCTGC
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GGCTGGGGCTGGACGACTGAAGGTGGTCGCAGCTCCTaGGACAGCATAGGCACGGCAGCCGGTGAGGCAGGT +
Preference number: 6 (lower is better)
Translates to: GWGWTTEGGRSS*DSIGTAAGEAG
Trigger: ACCTGCCTCACCGGCTGCCGTGCCTATGCTGTCCCAGGAGCTGCGACCACCTTCAGTCGTCCAGCCCCAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp TCCTGTCTCTGCTGCTGCTGCTGCTGCTGCTGCTCCTaGCGCCGTCGTGCCTCCTCATGGGCTCGACGTGCC +
Preference number: 6 (lower is better)
Translates to: SCLCCCCCCCCS*RRRASSWARRA
Trigger: GGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TGGGGTGGAGGCGGCAAAGGCGGTGGGGGTTGGGACTaGACCTTCACGGAAGGGAGTAGTGGTGTGGGAGGC +
Preference number: 6 (lower is better)
Translates to: WGGGGKGGGGWD*TFTEGSSGVGG
Trigger: GCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTTGCCGCCTCCACCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTGCTGCTaGTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGA +
Preference number: 6 (lower is better)
Translates to: CCSCLCCCCCCC*SWRRRASSWAR
Trigger: TCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTGCTaGTGCTCCTGGCGCCGTCGTGCCTCCTCATGGGCT +
Preference number: 6 (lower is better)
Translates to: CCCSCLCCCCCC*CSWRRRASSWA
Trigger: AGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTGCTaGTGCTGCTCCTGGCGCCGTCGTGCCTCCTCATGG +
Preference number: 6 (lower is better)
Translates to: CCCCSCLCCCCC*CCSWRRRASSW
Trigger: CCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TGCTGCTGCTGCTGCTCCTGTCTCTGCTGCTGCTGCTaGTGCTGCTGCTCCTGGCGCCGTCGTGCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: CCCCCSCLCCCC*CCCSWRRRASS
Trigger: TGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAGACAGGAGCAGCAGCAGCAGCA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp CGCTCCTGCTCTCGTTTCCGGGCCAACTCCCTCTGCTaGTCCAGCATAGACTGGGGCTGGGAGCTCTGGGCC +
Preference number: 6 (lower is better)
Translates to: RSCSRFRANSLC*SSIDWGWELWA
Trigger: GGCCCAGAGCTCCCAGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCAGGAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp CTCCTGGCGCCGTCGTGCCTCCTCATGGGCTCGACGTaGCTGTTCCAGCGCATCTTCATCCTCTCGGCTCCT +
Preference number: 6 (lower is better)
Translates to: LLAPSCLLMGST*LFQRIFILSAP
Trigger: AGGAGCCGAGAGGATGAAGATGCGCTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp CTCCGCTCCTGCTCTCGTTTCCGGGCCAACTCCCTCTaGTGGTCCAGCATAGACTGGGGCTGGGAGCTCTGG +
Preference number: 6 (lower is better)
Translates to: LRSCSRFRANSL*WSSIDWGWELW
Trigger: CCAGAGCTCCCAGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCAGGAGCGGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GAAGGGTGGGGTGGAGGCGGCAAAGGCGGTGGGGGTTaGGACTGCACCTTCACGGAAGGGAGTAGTGGTGTG +
Preference number: 6 (lower is better)
Translates to: EGWGGGGKGGGG*DCTFTEGSSGV
Trigger: CACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCGCCTTTGCCGCCTCCACCCCACCCTTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp GGTCTCTGGGGGTGGAGGATTGGTGCTGGCTGCATTTaGTGGCTGGGGTTGGGCCTGGGCCTGCGTTGTAGA +
Preference number: 6 (lower is better)
Translates to: GLWGWRIGAGCI*WLGLGLGLRCR
Trigger: TCTACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCCACCCCCAGAGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
ENSMUST00000125899.2
ENSMUST00000127893.8
ENSMUST00000235598.2
ENSMUST00000237008.2
ENSMUST00000237692.2
CDS GCA 72 bp ATTGTAGCTGCCATTGCCTCCCTGCGCCTCCGCTCCTaGTCTCGTTTCCGGGCCAACTCCCTCTGCTGGTCC +
Preference number: 6 (lower is better)
Translates to: IVAAIASLRLRS*SRFRANSLCWS
Trigger: GGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCAGGAGCGGAGGCGCAGGGAGGCAATGGCAGCTACAAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp TGGGGGCAGAGCAGCAGCTCGGTTACTGGGCCGAGATaGCTGTTGGGGCAGCGCATTGTGCAAAGCTGGAGG +
Preference number: 6 (lower is better)
Translates to: WGQSSSSVTGPR*LLGQRIVQSWR
Trigger: CCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GGAGGCAGCTCCGGCTGCGGCAGGTGCAAGATGGGCTaGGTGAAGTGGCCAATAGGGTCAAAGACACTGCCT +
Preference number: 6 (lower is better)
Translates to: GGSSGCGRCKMG*VKWPIGSKTLP
Trigger: AGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGGAGCTGCCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 90 bp CTTTGGGGGCAGAGCAGCAGCTCGGTTACTGGGCCGAGATGGCTGTaGGGGCAGCGCATTGTGCAAAGCTGGAGGAGAGACCACAGCATG +
Preference number: 6 (lower is better)
Translates to: LWGQSSSSVTGPRWL*GQRIVQSWRRDHSM
Trigger: CATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp TCCGGCTGCGGCAGGTGCAAGATGGGCTGGGTGAAGTaGCCAATAGGGTCAAAGACACTGCCTGGCAGCTGT +
Preference number: 6 (lower is better)
Translates to: SGCGRCKMGWVK*PIGSKTLPGSC
Trigger: ACAGCTGCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp AGAGCAGCAGCTCGGTTACTGGGCCGAGATGGCTGTTaGGGCAGCGCATTGTGCAAAGCTGGAGGAGAGACC +
Preference number: 6 (lower is better)
Translates to: RAAARLLGRDGC*GSALCKAGGET
Trigger: GGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp ATCTTCTCCTCCTTTACTACCACCAGGGGCTGGGGCTaGACGACTGAAGGTGGTCGCAGCTCCTGGGACAGC +
Preference number: 6 (lower is better)
Translates to: IFSSFTTTRGWG*TTEGGRSSWDS
Trigger: GCTGTCCCAGGAGCTGCGACCACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGAGAAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 72 bp CGGTTACTGGGCCGAGATGGCTGTTGGGGCAGCGCATaGTGCAAAGCTGGAGGAGAGACCACAGCATGCTGG +
Preference number: 6 (lower is better)
Translates to: RLLGRDGCWGSA*CKAGGETTACW
Trigger: CCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 72 bp CAGAGCAGCAGCTCGGTTACTGGGCCGAGATGGCTGTaGGGGCAGCGCATTGTGCAAAGCTGGAGGAGAGAC +
Preference number: 6 (lower is better)
Translates to: QSSSSVTGPRWL*GQRIVQSWRRD
Trigger: GTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 72 bp TGTGCAAAGCTGGAGGAGAGACCACAGCATGCTGGTTaGGATGGGGTGGAGTGCTGTGCTCAGGTGGCTGGG +
Preference number: 6 (lower is better)
Translates to: CAKLEERPQHAG*DGVECCAQVAG
Trigger: CCCAGCCACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GGAGGATTGGTGCTGGCTGCATTTGCTGGCTGGGGTTaGGCCTGGGCCTGCGTTGTAGACATTTGGGAGGTT +
Preference number: 6 (lower is better)
Translates to: GGLVLAAFAGWG*AWACVVDIWEV
Trigger: AACCTCCCAAATGTCTACAACGCAGGCCCAGGCCCAACCCCAGCCAGCAAATGCAGCCAGCACCAATCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
ENSMUST00000125899.2
ENSMUST00000127893.8
ENSMUST00000235598.2
ENSMUST00000237008.2
ENSMUST00000237692.2
CDS CAA 72 bp CCCGAGCAGCACGGCGGAAATGCTCAAAGCTGTCACTaGAGGACTTGGCTGTGGAGGATGGGGTGGTCGGAT +
Preference number: 6 (lower is better)
Translates to: PEQHGGNAQSCH*RTWLWRMGWSD
Trigger: ATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 90 bp TCCCGAGCAGCACGGCGGAAATGCTCAAAGCTGTCACTTGAGGACTaGGCTGTGGAGGATGGGGTGGTCGGATGCTTCTGTACCAGGCTG +
Preference number: 6 (lower is better)
Translates to: SRAARRKCSKLSLED*AVEDGVVGCFCTRL
Trigger: CAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 90 bp CCTCCTTCTCCCGAGCAGCACGGCGGAAATGCTCAAAGCTGTCACTaGAGGACTTGGCTGTGGAGGATGGGGTGGTCGGATGCTTCTGTA +
Preference number: 6 (lower is better)
Translates to: PPSPEQHGGNAQSCH*RTWLWRMGWSDASV
Trigger: TACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TTACTGGGCCGAGATGGCTGTTGGGGCAGCGCATTGTaGAAAGCTGGAGGAGAGACCACAGCATGCTGGTTG +
Preference number: 6 (lower is better)
Translates to: LLGRDGCWGSAL*KAGGETTACWL
Trigger: CAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp TCCCTCTCCTCCTTCTCCCGAGCAGCACGGCGGAAATaGTCAAAGCTGTCACTTGAGGACTTGGCTGTGGAG +
Preference number: 6 (lower is better)
Translates to: SLSSFSRAARRK*SKLSLEDLAVE
Trigger: CTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAGAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GCATTGTGCAAAGCTGGAGGAGAGACCACAGCATGCTaGTTGAGATGGGGTGGAGTGCTGTGCTCAGGTGGC +
Preference number: 6 (lower is better)
Translates to: ALCKAGGETTAC*LRWGGVLCSGG
Trigger: GCCACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GTTGGGACTGCACCTTCACGGAAGGGAGTAGTGGTGTaGGAGGCTGCACCTTCTGCAGCTGCTGTAGGTACA +
Preference number: 6 (lower is better)
Translates to: VGTAPSRKGVVV*EAAPSAAAVGT
Trigger: TGTACCTACAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp AGAAAAGGGCATGGATGGCAAGTGAACTGGTCGTGGTaGAGGCTGGTGTTGTTGCTGGGGTGGTGGCTGTGG +
Preference number: 6 (lower is better)
Translates to: RKGHGWQVNWSW*RLVLLLGWWLW
Trigger: CCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp AGCAGAAAAGGGCATGGATGGCAAGTGAACTGGTCGTaGTGGAGGCTGGTGTTGTTGCTGGGGTGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: SRKGHGWQVNWS*WRLVLLLGWWL
Trigger: CAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS GCA 72 bp AGCGCATTGTGCAAAGCTGGAGGAGAGACCACAGCATaGTGGTTGAGATGGGGTGGAGTGCTGTGCTCAGGT +
Preference number: 6 (lower is better)
Translates to: SALCKAGGETTA*WLRWGGVLCSG
Trigger: ACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCTCCTCCAGCTTTGCACAATGCGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp GTGGTGGGGGCTGCTGAATATGAGCAGAAAAGGGCATaGATGGCAAGTGAACTGGTCGTGGTGGAGGCTGGT +
Preference number: 6 (lower is better)
Translates to: VVGAAEYEQKRA*MASELVVVEAG
Trigger: ACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCTCATATTCAGCAGCCCCCACCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp ATCTTCTCCTCCTTTACTACCACCAGGGGCTGGGGCTaGACGACTGAAGGTGGTCGCAGCTCCTGCTTCTTA +
Preference number: 6 (lower is better)
Translates to: IFSSFTTTRGWG*TTEGGRSSCFL
Trigger: TAAGAAGCAGGAGCTGCGACCACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGAGAAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230858.2
CDS CAA 90 bp GGTTCTGCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTaGTGTTTGGTACCGTGGATACACCAGGCTTTGCTGCCCTACCTG +
Preference number: 6 (lower is better)
Translates to: GSAEASGSAEKLMLE*CLVPWIHQALLPYL
Trigger: CAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003726.16
CDS CCA 72 bp TGGGGGCTGCTGAATATGAGCAGAAAAGGGCATGGATaGCAAGTGAACTGGTCGTGGTGGAGGCTGGTGTTG +
Preference number: 6 (lower is better)
Translates to: WGLLNMSRKGHG*QVNWSWWRLVL
Trigger: CAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCTCATATTCAGCAGCCCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CCA 72 bp CACGGCGGAAATGCTCAAAGCTGTCACTTGAGGACTTaGCTGTGGAGGATGGGGTGGTCGGATGCTTCTGTA +
Preference number: 6 (lower is better)
Translates to: HGGNAQSCHLRT*LWRMGWSDASV
Trigger: TACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTCCTCAAGTGACAGCTTTGAGCATTTCCGCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS TCA 72 bp GAGGTGCTGAAAGGCTCGCTGCGAATGATTGGTGAGTaGATCTTCTCCTCCTTTACTACCACCAGGGGCTGG +
Preference number: 6 (lower is better)
Translates to: EVLKGSLRMIGE*IFSSFTTTRGW
Trigger: CCAGCCCCTGGTGGTAGTAAAGGAGGAGAAGATTCACTCACCAATCATTCGCAGCGAGCCTTTCAGCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
ENSMUST00000230858.2
CDS CCA 72 bp AATATGAGCAGAAAAGGGCATGGATGGCAAGTGAACTaGTCGTGGTGGAGGCTGGTGTTGTTGCTGGGGTGG +
Preference number: 6 (lower is better)
Translates to: NMSRKGHGWQVN*SWWRLVLLLGW
Trigger: CCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCTGCTCATATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 90 bp GCTGAGGCGTCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAGGCTTTGCTGCCCTACCTGTTTCTT +
Preference number: 6 (lower is better)
Translates to: AEASGSAEKLMLELC*VPWIHQALLPYLFL
Trigger: AAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003726.16
CDS TCA 72 bp GGAGCTGGATTCGCTGGTGCTCTCCGACTCAGAGGATaGGAATCCCTTCATCTTGGAAGAACCAGCAATCAC +
Preference number: 6 (lower is better)
Translates to: GAGFAGALRLRG*ESLHLGRTSNH
Trigger: GTGATTGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS GCA 72 bp CAAAAGATCACTCTGGAAATTCATGTCAATTGTAGCTaGCATTGCCTCCCTGCGCCTCCGCTCCTGCTCTCG +
Preference number: 6 (lower is better)
Translates to: QKITLEIHVNCS*HCLPAPPLLLS
Trigger: CGAGAGCAGGAGCGGAGGCGCAGGGAGGCAATGGCAGCTACAATTGACATGAATTTCCAGAGTGATCTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000003726.16
ENSMUST00000121285.8
CDS CAA 72 bp TCTGGGTCTGCGGAGAAGTTGATGCTTGAGTTGTGTTaGGTACCGTGGATACACCAGGCTTTGCTGCCCTAC +
Preference number: 6 (lower is better)
Translates to: SGSAEKLMLELC*VPWIHQALLPY
Trigger: GTAGGGCAGCAAAGCCTGGTGTATCCACGGTACCAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000003726.16
CDS CCA 72 bp TGGGCTTACACTTATCCTCCTCTTCTGATTCATATGTaGGAGGCGGCTTGGTCTTCGTGGGTACTGGTTCCT +
Preference number: 6 (lower is better)
Translates to: WAYTYPPLLIHM*EAAWSSWVLVP
Trigger: AGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CCA 72 bp TTTCAGAGTCTTCACTGTCAGAGGAGCTGGATTCGCTaGTGCTCTCCGACTCAGAGGATGAGAATCCCTTCA +
Preference number: 6 (lower is better)
Translates to: FQSLHCQRSWIR*CSPTQRMRIPS
Trigger: TGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CAA 90 bp GGCTTACACTTATCCTCCTCTTCTGATTCATATGTGGGAGGCGGCTaGGTCTTCGTGGGTACTGGTTCCTTCTTGCTCACATTGCTGTTG +
Preference number: 6 (lower is better)
Translates to: GLHLSSSSDSYVGGG*VFVGTGSFLLTLLL
Trigger: CAACAGCAATGTGAGCAAGAAGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS TCA 72 bp CTCATAAGACATGGGCTTACACTTATCCTCCTCTTCTaGTTCATATGTGGGAGGCGGCTTGGTCTTCGTGGG +
Preference number: 6 (lower is better)
Translates to: LIRHGLTLILLF*FICGRRLGLRG
Trigger: CCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CCA 72 bp TATCCTCCTCTTCTGATTCATATGTGGGAGGCGGCTTaGTCTTCGTGGGTACTGGTTCCTTCTTGCTCACAT +
Preference number: 6 (lower is better)
Translates to: YPPLLIHMWEAA*SSWVLVPSCSH
Trigger: ATGTGAGCAAGAAGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CAA 72 bp TTATCCTCCTCTTCTGATTCATATGTGGGAGGCGGCTaGGTCTTCGTGGGTACTGGTTCCTTCTTGCTCACA +
Preference number: 6 (lower is better)
Translates to: LSSSSDSYVGGG*VFVGTGSFLLT
Trigger: TGTGAGCAAGAAGGAACCAGTACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CAA 72 bp GTGCTCTCCGACTCAGAGGATGAGAATCCCTTCATCTaGGAAGAACCAGCAATCACGTCAACTTTTTCAGCT +
Preference number: 6 (lower is better)
Translates to: VLSDSEDENPFI*EEPAITSTFSA
Trigger: AGCTGAAAAAGTTGACGTGATTGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8
CDS CAA 72 bp CTTGGAAGAACCAGCAATCACGTCAACTTTTTCAGCTaGAGGTTTCCTTTTCTTCCGCAAACAGGAGGTGAC +
Preference number: 6 (lower is better)
Translates to: LGRTSNHVNFFS*RFPFLPQTGGD
Trigger: GTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGACGTGATTGCTGGTTCTTCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000003726.16
ENSMUST00000120276.9
ENSMUST00000121285.8