Pregenerated sensors for BRCC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031201Ensembl transcript IDs: ENSMUST00000033544.14, ENSMUST00000114074.8, ENSMUST00000118428.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAAATAAGAAATCAGCCAGGCATGGTTGTAAGAGAACTGCTAGATTaGGGCCAGACTGGGCTGTTGAGTGATGCCCTATCTCAAAAAGGT | + |
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Preference number: 1 (lower is better) Translates to: KIRNQPGMVVRELLD*GQTGLLSDALSQKG Trigger: ACCTTTTTGAGATAGGGCATCACTCAACAGCCCAGTCTGGCCCCAATCTAGCAGTTCTCTTACAACCATGCCTGGCTGATTTCTTATTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CCA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTTCCAGTTTTTGCATATaGATGCCTCCTTCACTGAGG | + |
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Preference number: 2 (lower is better) Translates to: LTSENLDILPAHSSSRIPSSFCI*MPPSLR Trigger: CCTCAGTGAAGGAGGCATCCATATGCAAAAACTGGA...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR GCA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTCTAGATTCCAGTTTTTaGATATGGATGCCTCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: LTSENLDILPAHSSSRIPLDSSF*IWMPPS Trigger: TGAAGGAGGCATCCATATGCAAAAACTGGAATCTAG...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR GCA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTCCAAGACAGTATTATTaGTGGGTCATGTTAAGTGTA | + |
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Preference number: 2 (lower is better) Translates to: LTSENLDILPAHSSSRIPPRQYY*WVMLSV Trigger: TACACTTAACATGACCCAGCAATAATACTGTCTTGG...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR TCA 90 bp | CTGCAGAGTATTTGGGTTATTTCTAATTTGCAGCTATCACAGATAAAGCTGCCAATTAGTGGTTACATATaGAGGAATGCTATGCTCATC | + |
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Preference number: 2 (lower is better) Translates to: LQSIWVISNLQLSQIKLPISGYI*RNAMLI Trigger: GATGAGCATAGCATTCCTTCATATGTAACCACTAAT...TGGCAGCTTTATCTGTGATAGCTGCAAATTAGAAATAACCCAAATACTCTGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114074.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGAGTATTTGGGTTATTTCTAATTTGCAGCTATCACAGATAAAGCTGCCACTTGTGGAGGTTCAATaGGTTGAAATGACTGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: LQSIWVISNLQLSQIKLPLVEVQ*VEMTVF Trigger: AAAAACAGTCATTTCAACGCATTGAACCTCCACAAG...TGGCAGCTTTATCTGTGATAGCTGCAAATTAGAAATAACCCAAATACTCTGCAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGAGTATTTGGGTTATTTCTAATTTGCAGCTATCACAGATAAAGCTGCCACCAAGACAGTATTATTaGTGGGTCATGTTAAGTGTA | + |
|
Preference number: 2 (lower is better) Translates to: LQSIWVISNLQLSQIKLPPRQYY*WVMLSV Trigger: TACACTTAACATGACCCAGCAATAATACTGTCTTGG...TGGCAGCTTTATCTGTGATAGCTGCAAATTAGAAATAACCCAAATACTCTGCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTGCTCATTAGCTAGTGAACTACCATTTCTATTCTCTCTTAATGGGGAGAGACAACCATACAGTAAGTaGTCTTTTAAGACAACCTTT | + |
|
Preference number: 2 (lower is better) Translates to: VCSLASELPFLFSLNGERQPYSK*SFKTTF Trigger: AAAGGTTGTCTTAAAAGAGCACTTACTGTATGGTTG...TCTCTCCCCATTAAGAGAGAATAGAAATGGTAGTTCACTAGCTAATGAGCACAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR GCA 90 bp | TTGGTATTTTCACTATCTTTTTCTATAGCAGTCCTGATAAGTATATGCCACACCCTTGTGGAGGTTCAATaGGTTGAAATGACTGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: LVFSLSFSIAVLISICHTLVEVQ*VEMTVF Trigger: AAAAACAGTCATTTCAACGCATTGAACCTCCACAAG...GGTGTGGCATATACTTATCAGGACTGCTATAGAAAAAGATAGTGAAAATACCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR CCA 72 bp | AATCAGCCAGGCATGGTTGTAAGAGAACTGCTAGATTaGGGCCAGACTGGGCTGTTGAGTGATGCCCTATCT | + |
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Preference number: 3 (lower is better) Translates to: NQPGMVVRELLD*GQTGLLSDALS Trigger: AGATAGGGCATCACTCAACAGCCCAGTCTGGCCCCAATCTAGCAGTTCTCTTACAACCATGCCTGGCTGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR CCA 72 bp | AAACTTGAAATGTTCCTGCTTCAGCCTCCTGAGCACTaGGACTATAGGCATGTGACACTACATATGGCTCAT | + |
|
Preference number: 3 (lower is better) Translates to: KLEMFLLQPPEH*DYRHVTLHMAH Trigger: ATGAGCCATATGTAGTGTCACATGCCTATAGTCCCAGTGCTCAGGAGGCTGAAGCAGGAACATTTCAAGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTTTAGAATATACTTTGTaGGCTTGTGGAGGTTCAATG | + |
|
Preference number: 3 (lower is better) Translates to: LTSENLDILPAHSSSRIPLEYTL*ACGGSM Trigger: CATTGAACCTCCACAAGCCAACAAAGTATATTCTAA...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | GTGTGCTCATTAGCTAGTGAACTACCATTTCTATTCTCTCTTAATGGGGAGAGAGCCAAGACAGTATTATaGCTGGGTCATGTTAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: VCSLASELPFLFSLNGERAKTVL*LGHVKC Trigger: ACACTTAACATGACCCAGCAATAATACTGTCTTGGC...TCTCTCCCCATTAAGAGAGAATAGAAATGGTAGTTCACTAGCTAATGAGCACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTCATAGTAAGAATGGTTaGTTGAGCCATTTACTCACT | + |
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Preference number: 3 (lower is better) Translates to: LTSENLDILPAHSSSRIPHSKNG*LSHLLT Trigger: AGTGAGTAAATGGCTCAACAAACCATTCTTACTATG...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTTATATAATGGGTCACTaGAAATCTGAGTCTGGAGTT | + |
|
Preference number: 3 (lower is better) Translates to: LTSENLDILPAHSSSRIPYIMGH*KSESGV Trigger: AACTCCAGACTCAGATTTCAAGTGACCCATTATATA...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | GTGTGCTCATTAGCTAGTGAACTACCATTTCTATTCTCTCTTAATGGGGAGAGAAGAATAGCTCTAAACTaGAAATGTTCCTGCTTCAGC | + |
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Preference number: 3 (lower is better) Translates to: VCSLASELPFLFSLNGERRIALN*KCSCFS Trigger: GCTGAAGCAGGAACATTTCAAGTTTAGAGCTATTCT...TCTCTCCCCATTAAGAGAGAATAGAAATGGTAGTTCACTAGCTAATGAGCACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGTTTTTGCATATGGATGCCTCCTTCACTGAGGTAAGACATATAAGAGAATATGAGAAATCTAGTTaGCATCCTCAACCGTATTTG | + |
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Preference number: 3 (lower is better) Translates to: FQFLHMDASFTEVRHIREYEKSS*HPQPYL Trigger: CAAATACGGTTGAGGATGCAAACTAGATTTCTCATA...TTCTCTTATATGTCTTACCTCAGTGAAGGAGGCATCCATATGCAAAAACTGGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | TTGGTATTTTCACTATCTTTTTCTATAGCAGTCCTGATAAGTATATGCCACACCGCCAAGACAGTATTATaGCTGGGTCATGTTAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: LVFSLSFSIAVLISICHTAKTVL*LGHVKC Trigger: ACACTTAACATGACCCAGCAATAATACTGTCTTGGC...GGTGTGGCATATACTTATCAGGACTGCTATAGAAAAAGATAGTGAAAATACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR TCA 72 bp | TACCTACTAGAAATATATAATGGGTCACTTGAAATCTaGGTCTGGAGTTCAGACAGAGGTATAGAGAAATGG | + |
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Preference number: 3 (lower is better) Translates to: YLLEIYNGSLEI*VWSSDRGIEKW Trigger: CCATTTCTCTATACCTCTGTCTGAACTCCAGACTCAGATTTCAAGTGACCCATTATATATTTCTAGTAGGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR TCA 72 bp | ACTCAATTCTATTCACTAATAGTGGAAAATACTATTTaGAGTCCAGTACCTTGGTGCCAGGTGTGCTCATTA | + |
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Preference number: 3 (lower is better) Translates to: TQFYSLIVENTI*SPVPWCQVCSL Trigger: TAATGAGCACACCTGGCACCAAGGTACTGGACTTCAAATAGTATTTTCCACTATTAGTGAATAGAATTGAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| 3UTR-3UTR CAA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTATTAGAATATACTTTGTaGGCTTGTGGAGGTTCAATG | + |
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Preference number: 3 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLLEYTL*ACGGSM Trigger: CATTGAACCTCCACAAGCCAACAAAGTATATTCTAA...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTATATGAGAAATCTAGTTaGCATCCTCAACCGTATTTG | + |
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Preference number: 3 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLYEKSS*HPQPYL Trigger: CAAATACGGTTGAGGATGCAAACTAGATTTCTCATA...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTACAAATATCACTGTGGTaGGGACTATTACTATCTGTT | + |
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Preference number: 3 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLQISLW*GLLLSV Trigger: AACAGATAGTAATAGTCCCAACCACAGTGATATTTG...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114074.8 |
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| 3UTR-3UTR CAA 90 bp | CATGATATATTTGGAGGTACTTTTAGAATATACTTTGTTGGCTTGTGGAGGTTCTTAGAATATACTTTGTaGGCTTGTGGAGGTTCAATG | + |
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Preference number: 3 (lower is better) Translates to: HDIFGGTFRIYFVGLWRFLEYTL*ACGGSM Trigger: CATTGAACCTCCACAAGCCAACAAAGTATATTCTAA...GAACCTCCACAAGCCAACAAAGTATATTCTAAAAGTACCTCCAAATATATCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR-3UTR CAA 90 bp | TTGGTATTTTCACTATCTTTTTCTATAGCAGTCCTGATAAGTATATGCCACACCCATAGTAAGAATGGTTaGTTGAGCCATTTACTCACT | + |
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Preference number: 3 (lower is better) Translates to: LVFSLSFSIAVLISICHTHSKNG*LSHLLT Trigger: AGTGAGTAAATGGCTCAACAAACCATTCTTACTATG...GGTGTGGCATATACTTATCAGGACTGCTATAGAAAAAGATAGTGAAAATACCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR GCA 72 bp | TTACATTCCTGTCATTGGTGTATGAGAAATCTAGTTTaGATCCTCAACCGTATTTGGTATTTTCACTATCTT | + |
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Preference number: 3 (lower is better) Translates to: LHSCHWCMRNLV*ILNRIWYFHYL Trigger: AAGATAGTGAAAATACCAAATACGGTTGAGGATGCAAACTAGATTTCTCATACACCAATGACAGGAATGTAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR CCA 72 bp | CATTTCTATTCTCTCTTAATGGGGAGAGATAAGAAGTaGAGGTATATAGATGTACTGATCATTCTCTCAATA | + |
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Preference number: 3 (lower is better) Translates to: HFYSLLMGRDKK*RYIDVLIILSI Trigger: TATTGAGAGAATGATCAGTACATCTATATACCTCCACTTCTTATCTCTCCCCATTAAGAGAGAATAGAAATG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR TCA 90 bp | CTAGATTGGGGCCAGACTGGGCTGTTGAGTGATGCCCTATCTCAAAAAGGTTTTATTCTTGGTAAATACTaGGCCATTATGGATCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LDWGQTGLLSDALSQKGFILGKY*AIMDLG Trigger: ACCAAGATCCATAATGGCTCAGTATTTACCAAGAAT...AAAACCTTTTTGAGATAGGGCATCACTCAACAGCCCAGTCTGGCCCCAATCTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR GCA 90 bp | TTCCAGTTTTTGCATATGGATGCCTCCTTCACTGAGGTAAGACATATAAGAGAATCTTTTCTTGGACTGTaGGCATTTCCGTTCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: FQFLHMDASFTEVRHIRESFLGL*AFPFQC Trigger: ACACTGGAACGGAAATGCGCACAGTCCAAGAAAAGA...TTCTCTTATATGTCTTACCTCAGTGAAGGAGGCATCCATATGCAAAAACTGGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR GCA 90 bp | CTGCAGAGTATTTGGGTTATTTCTAATTTGCAGCTATCACAGATAAAGCTGCCATCTTGTTGCAACTCCTaGAAATGCTGCTGGTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: LQSIWVISNLQLSQIKLPSCCNS*KCCWFC Trigger: GCAAAACCAGCAGCATTTGCAGGAGTTGCAACAAGA...TGGCAGCTTTATCTGTGATAGCTGCAAATTAGAAATAACCCAAATACTCTGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR TCA 90 bp | CTGCAGAGTATTTGGGTTATTTCTAATTTGCAGCTATCACAGATAAAGCTGCCAAGATGTGTAAGGCTGTaGATCCTTCTATATGCATCC | + |
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Preference number: 4 (lower is better) Translates to: LQSIWVISNLQLSQIKLPRCVRL*ILLYAS Trigger: GGATGCATATAGAAGGATTCACAGCCTTACACATCT...TGGCAGCTTTATCTGTGATAGCTGCAAATTAGAAATAACCCAAATACTCTGCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 |
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| CDS-3UTR TCA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTACTGACTGCTGACATCTaGCTGCACAAATTCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLLTADI*LHKFLV Trigger: TACCAAGAATTTGTGCAGTCAGATGTCAGCAGTCAG...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR GCA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTATCTTTTCTTGGACTGTaGGCATTTCCGTTCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLSFLGL*AFPFQC Trigger: ACACTGGAACGGAAATGCGCACAGTCCAAGAAAAGA...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR CCA 90 bp | TTCCAGTTTTTGCATATGGATGCCTCCTTCACTGAGGTAAGACATATAAGAGAAGTATCCATCTTTTCTTaGACTGTGCGCATTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: FQFLHMDASFTEVRHIREVSIFS*TVRISV Trigger: AACGGAAATGCGCACAGTCCAAGAAAAGATGGATAC...TTCTCTTATATGTCTTACCTCAGTGAAGGAGGCATCCATATGCAAAAACTGGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR CCA 90 bp | CTGCAGAGTATTTGGGTTATTTCTAATTTGCAGCTATCACAGATAAAGCTGCCAGTATCCATCTTTTCTTaGACTGTGCGCATTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: LQSIWVISNLQLSQIKLPVSIFS*TVRISV Trigger: AACGGAAATGCGCACAGTCCAAGAAAAGATGGATAC...TGGCAGCTTTATCTGTGATAGCTGCAAATTAGAAATAACCCAAATACTCTGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR TCA 90 bp | CATGATATATTTGGAGGTACTTTTAGAATATACTTTGTTGGCTTGTGGAGGTTCCTGACTGCTGACATCTaGCTGCACAAATTCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: HDIFGGTFRIYFVGLWRFLTADI*LHKFLV Trigger: TACCAAGAATTTGTGCAGTCAGATGTCAGCAGTCAG...GAACCTCCACAAGCCAACAAAGTATATTCTAAAAGTACCTCCAAATATATCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR GCA 90 bp | CATGATATATTTGGAGGTACTTTTAGAATATACTTTGTTGGCTTGTGGAGGTTCTCTTTTCTTGGACTGTaGGCATTTCCGTTCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: HDIFGGTFRIYFVGLWRFSFLGL*AFPFQC Trigger: ACACTGGAACGGAAATGCGCACAGTCCAAGAAAAGA...GAACCTCCACAAGCCAACAAAGTATATTCTAAAAGTACCTCCAAATATATCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR GCA 90 bp | CATGATATATTTGGAGGTACTTTTAGAATATACTTTGTTGGCTTGTGGAGGTTCTCTTGTTGCAACTCCTaGAAATGCTGCTGGTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: HDIFGGTFRIYFVGLWRFSCCNS*KCCWFC Trigger: GCAAAACCAGCAGCATTTGCAGGAGTTGCAACAAGA...GAACCTCCACAAGCCAACAAAGTATATTCTAAAAGTACCTCCAAATATATCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR CCA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTAGTATCCATCTTTTCTTaGACTGTGCGCATTTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLVSIFS*TVRISV Trigger: AACGGAAATGCGCACAGTCCAAGAAAAGATGGATAC...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR CAA 72 bp | GACTCAATTCTATTCACTAATAGTGGAAAATACTATTaGAAGTCCAGTACCTTGGTGCCAGGTGTGCTCATT | + |
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Preference number: 4 (lower is better) Translates to: DSILFTNSGKYY*KSSTLVPGVLI Trigger: AATGAGCACACCTGGCACCAAGGTACTGGACTTCAAATAGTATTTTCCACTATTAGTGAATAGAATTGAGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR TCA 90 bp | CATGATATATTTGGAGGTACTTTTAGAATATACTTTGTTGGCTTGTGGAGGTTCAGATGTGTAAGGCTGTaGATCCTTCTATATGCATCC | + |
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Preference number: 4 (lower is better) Translates to: HDIFGGTFRIYFVGLWRFRCVRL*ILLYAS Trigger: GGATGCATATAGAAGGATTCACAGCCTTACACATCT...GAACCTCCACAAGCCAACAAAGTATATTCTAAAAGTACCTCCAAATATATCATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 |
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| CDS-3UTR TCA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTAATTCTTGGTAAATACTaGGCCATTATGGATCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLILGKY*AIMDLG Trigger: ACCAAGATCCATAATGGCTCAGTATTTACCAAGAAT...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR TCA 90 bp | CATGATATATTTGGAGGTACTTTTAGAATATACTTTGTTGGCTTGTGGAGGTTCATTCTTGGTAAATACTaGGCCATTATGGATCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: HDIFGGTFRIYFVGLWRFILGKY*AIMDLG Trigger: ACCAAGATCCATAATGGCTCAGTATTTACCAAGAAT...GAACCTCCACAAGCCAACAAAGTATATTCTAAAAGTACCTCCAAATATATCATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| 3UTR CAA 72 bp | TTTACATTCCTGTCATTGGTGTATGAGAAATCTAGTTaGCATCCTCAACCGTATTTGGTATTTTCACTATCT | + |
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Preference number: 4 (lower is better) Translates to: FTFLSLVYEKSS*HPQPYLVFSLS Trigger: AGATAGTGAAAATACCAAATACGGTTGAGGATGCAAACTAGATTTCTCATACACCAATGACAGGAATGTAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR CAA 90 bp | CTAACCAGTGAGAACCTTGATATTCTACCTGCCCATTCCTCTTCACGAATACCTAACCGCCTGCACAGCTaGCACCACCTGCACCGCCAT | + |
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Preference number: 5 (lower is better) Translates to: LTSENLDILPAHSSSRIPNRLHS*HHLHRH Trigger: ATGGCGGTGCAGGTGGTGCAAGCTGTGCAGGCGGTT...AGGTATTCGTGAAGAGGAATGGGCAGGTAGAATATCAAGGTTCTCACTGGTTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR CAA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTAAACCGCCTGCACAGCTaGCACCACCTGCACCGCCAT | + |
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Preference number: 5 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLNRLHS*HHLHRH Trigger: ATGGCGGTGCAGGTGGTGCAAGCTGTGCAGGCGGTT...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR CAA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTAACACGGTCCTTTCTCTaGTCAGAACGCCGCAAGATG | + |
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Preference number: 5 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLTRSFL*SERRKM Trigger: CATCTTGCGGCGTTCTGACAAGAGAAAGGACCGTGT...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR CAA 90 bp | CAACAAGCCAAAATTCCAAATATCACTGTGGTTGGGACTATTACTATCTGTTTTACACGGTCCTTTCTCTaGTCAGAACGCCGCAAGATG | + |
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Preference number: 5 (lower is better) Translates to: QQAKIPNITVVGTITICFTRSFL*SERRKM Trigger: CATCTTGCGGCGTTCTGACAAGAGAAAGGACCGTGT...AAAACAGATAGTAATAGTCCCAACCACAGTGATATTTGGAATTTTGGCTTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114074.8 |
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| CDS-3UTR CAA 90 bp | TTGGTATTTTCACTATCTTTTTCTATAGCAGTCCTGATAAGTATATGCCACACCACACGGTCCTTTCTCTaGTCAGAACGCCGCAAGATG | + |
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Preference number: 5 (lower is better) Translates to: LVFSLSFSIAVLISICHTTRSFL*SERRKM Trigger: CATCTTGCGGCGTTCTGACAAGAGAAAGGACCGTGT...GGTGTGGCATATACTTATCAGGACTGCTATAGAAAAAGATAGTGAAAATACCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS-3UTR CAA 90 bp | GTGTGCTCATTAGCTAGTGAACTACCATTTCTATTCTCTCTTAATGGGGAGAGATTGGGCTTGTATGGATaGGAAGCAAGTATAGAGTAC | + |
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Preference number: 5 (lower is better) Translates to: VCSLASELPFLFSLNGERLGLYG*EASIEY Trigger: GTACTCTATACTTGCTTCCAATCCATACAAGCCCAA...TCTCTCCCCATTAAGAGAGAATAGAAATGGTAGTTCACTAGCTAATGAGCACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033544.14 |
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| CDS-3UTR CAA 90 bp | CCTTTCCACTACATAGTAGTAGTCCATAGTAAGAATGGTTTGTTGAGCCATTTATTGGGCTTGTATGGATaGGAAGCAAGTATAGAGTAC | + |
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Preference number: 5 (lower is better) Translates to: PFHYIVVVHSKNGLLSHLLGLYG*EASIEY Trigger: GTACTCTATACTTGCTTCCAATCCATACAAGCCCAA...TAAATGGCTCAACAAACCATTCTTACTATGGACTACTACTATGTAGTGGAAAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS CAA 72 bp | TGGACTGTGCGCATTTCCGTTCCAGTGTATGTAAATTaGGAGTCACTCCTTATGTCATCATTCAACTCCCCT | + |
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Preference number: 6 (lower is better) Translates to: WTVRISVPVYVN*ESLLMSSFNSP Trigger: AGGGGAGTTGAATGATGACATAAGGAGTGACTCCAAATTTACATACACTGGAACGGAAATGCGCACAGTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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| CDS CAA 72 bp | ATGGATATGAACAATTCTGATGGTATCCATCTTTTCTaGGACTGTGCGCATTTCCGTTCCAGTGTATGTAAA | + |
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Preference number: 6 (lower is better) Translates to: MDMNNSDGIHLF*DCAHFRSSVCK Trigger: TTTACATACACTGGAACGGAAATGCGCACAGTCCAAGAAAAGATGGATACCATCAGAATTGTTCATATCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033544.14 ENSMUST00000114074.8 ENSMUST00000118428.8 |
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