RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BPNT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026617

Ensembl transcript IDs: ENSMUST00000027916.13, ENSMUST00000110965.2, ENSMUST00000151769.2, ENSMUST00000210277.2

Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACTCTGTGCCCTGAAGAAATCTGGTTTATCAGCAGGAATGTTGACTaGACAAATGACTTGGACAGTCATTTGAAACTAACCCTTTTTCAT +
Preference number: 1 (lower is better)
Translates to: TLCPEEIWFISRNVD*TNDLDSHLKLTLFH
Trigger: ATGAAAAAGGGTTAGTTTCAAATGACTGTCCAAGTCATTTGTGCAGTCAACATTCCTGCTGATAAACCAGATTTCTTCAGGGCACAGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR-3UTR GCA 90 bp TTTTCATTTCTTCACTTAGAAATAGTAACATTTGAGCCAGGTGTGGTGGGGCAACAGGACAGCTGGGGCTaGACAGAGAAACCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: FSFLHLEIVTFEPGVVGQQDSWG*TEKPCL
Trigger: GAGACAGGGTTTCTCTGTGCAGCCCCAGCTGTCCTG...TTGCCCCACCACACCTGGCTCAAATGTTACTATTTCTAAGTGAAGAAATGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR-3UTR CCA 90 bp CAACTGAAATTCTGGAGTAACTTAAGACTCTGTGCCCTGAAGAAATCTGGTTTATTGAGCCAGGTGTGGTaGGGCAAGCCCTTAATCCCT +
Preference number: 2 (lower is better)
Translates to: QLKFWSNLRLCALKKSGLLSQVW*GKPLIP
Trigger: AGGGATTAAGGGCTTGCCCCACCACACCTGGCTCAA...TAAACCAGATTTCTTCAGGGCACAGAGTCTTAAGTTACTCCAGAATTTCAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR-3UTR CAA 90 bp GTGTGGTGGGGCAAGCCCTTAATCCCTGCACTAAGGAGGCAGAGGCAGGGGAATTTAAGATGTGTTCCTTaGAACCAAGGCCTCTGGGTA +
Preference number: 3 (lower is better)
Translates to: VWWGKPLIPALRRQRQGNLRCVP*NQGLWV
Trigger: TACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAA...ATTCCCCTGCCTCTGCCTCCTTAGTGCAGGGATTAAGGGCTTGCCCCACCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR TCA 72 bp ATCCCTGCACTAAGGAGGCAGAGGCAGGGGAATCTCTaGGTGCAAGGCCAACTTTGTCTACAGAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: IPALRRQRQGNL*VQGQLCLQSEF
Trigger: GAACTCACTCTGTAGACAAAGTTGGCCTTGCACTCAGAGATTCCCCTGCCTCTGCCTCCTTAGTGCAGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR-3UTR CAA 90 bp TTTCTTCACTTAGAAATAGTAACATTTGAGCCAGGTGTGGTGGGGCAAGCCCTTCCACACCTGGCTAATTaGTTTTTAGGCAGGAGAAAT +
Preference number: 3 (lower is better)
Translates to: FLHLEIVTFEPGVVGQALPHLAN*FLGRRN
Trigger: ATTTCTCCTGCCTAAAAACAAATTAGCCAGGTGTGG...AAGGGCTTGCCCCACCACACCTGGCTCAAATGTTACTATTTCTAAGTGAAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR GCA 72 bp CCTGAAGAAATCTGGTTTATCAGCAGGAATGTTGACTaGACAAATGACTTGGACAGTCATTTGAAACTAACC +
Preference number: 3 (lower is better)
Translates to: PEEIWFISRNVD*TNDLDSHLKLT
Trigger: GGTTAGTTTCAAATGACTGTCCAAGTCATTTGTGCAGTCAACATTCCTGCTGATAAACCAGATTTCTTCAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
3UTR-3UTR CAA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATTTAAGATGTGTTCCTTaGAACCAAGGCCTCTGGGTA +
Preference number: 3 (lower is better)
Translates to: KSLINDKCRQSSNCSISNLRCVP*NQGLWV
Trigger: TACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAA...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp GTGTGGTGGGGCAAGCCCTTAATCCCTGCACTAAGGAGGCAGAGGCAGGGGAATGTGGTTGTGATAATGTaGTTCCCGGCAGGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: VWWGKPLIPALRRQRQGNVVVIM*FPAGAS
Trigger: GGAAGCCCCTGCCGGGAAGCACATTATCACAACCAC...ATTCCCCTGCCTCTGCCTCCTTAGTGCAGGGATTAAGGGCTTGCCCCACCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR CCA 90 bp GAGGCTAGGCTCAAGCAATCCTCTGATTCAACCACTGGAGTAGCTATGACTATTCCAAGCGGTCGGCTTTaGTCTGCAGGTCGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: EARLKQSSDSTTGVAMTIPSGRL*SAGRWP
Trigger: CGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGG...AATAGTCATAGCTACTCCAGTGGTTGAATCAGAGGATTGCTTGAGCCTAGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR TCA 90 bp GAGGCTAGGCTCAAGCAATCCTCTGATTCAACCACTGGAGTAGCTATGACTATTGGTCCTCTTCCCCTATaGTGGTCAGCTTCGGGAACT +
Preference number: 4 (lower is better)
Translates to: EARLKQSSDSTTGVAMTIGPLPL*WSASGT
Trigger: AGTTCCCGAAGCTGACCATCATAGGGGAAGAGGACC...AATAGTCATAGCTACTCCAGTGGTTGAATCAGAGGATTGCTTGAGCCTAGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR GCA 90 bp GAGGCTAGGCTCAAGCAATCCTCTGATTCAACCACTGGAGTAGCTATGACTATTACCTCCTTGTTGTACTaGAGGGCATTCCCATGGATG +
Preference number: 4 (lower is better)
Translates to: EARLKQSSDSTTGVAMTITSLLY*RAFPWM
Trigger: CATCCATGGGAATGCCCTGCAGTACAACAAGGAGGT...AATAGTCATAGCTACTCCAGTGGTTGAATCAGAGGATTGCTTGAGCCTAGCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR CCA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCCAAGCGGTCGGCTTTaGTCTGCAGGTCGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: KSLINDKCRQSSNCSISNPSGRL*SAGRWP
Trigger: CGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGG...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS-3UTR TCA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGCGGAAATGCAGTCTGTaGCCAGCTGGTTGCTATGGG +
Preference number: 4 (lower is better)
Translates to: SLINDKCRQSSNCSISNQRKCSL*PAGCYG
Trigger: CCCATAGCAACCAGCTGGTCACAGACTGCATTTCCG...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp AACTTAAGACTCTGTGCCCTGAAGAAATCTGGTTTATCAGCAGGAATGTTGACTGAGCATATGCTCATCTaGACCAAGCGGTCGGCTTTG +
Preference number: 4 (lower is better)
Translates to: NLRLCALKKSGLSAGMLTEHMLI*TKRSAL
Trigger: CAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTC...AGTCAACATTCCTGCTGATAAACCAGATTTCTTCAGGGCACAGAGTCTTAAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR GCA 90 bp GAAGAAATCTGGTTTATCAGCAGGAATGTTGACTGCACAAATGACTTGGACAGTAGGATCTCCTCCCACTaGCCGTCTTCAATCAGCTCT +
Preference number: 4 (lower is better)
Translates to: EEIWFISRNVDCTNDLDSRISSH*PSSISS
Trigger: AGAGCTGATTGAAGACGGGCAGTGGGAGGAGATCCT...ACTGTCCAAGTCATTTGTGCAGTCAACATTCCTGCTGATAAACCAGATTTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR GCA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCATTGATAGCACTGTACTaGGAGGGGCACGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSLIALY*EGHGCF
Trigger: GAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAA...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAGTGGTTGTGATAATGTaGTTCCCGGCAGGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSVVVIM*FPAGAS
Trigger: GGAAGCCCCTGCCGGGAAGCACATTATCACAACCAC...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR TCA 90 bp CTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTATGGTCCTCTTCCCCTATaGTGGTCAGCTTCGGGAACT +
Preference number: 4 (lower is better)
Translates to: LINDKCRQSSNCSISNQYGPLPL*WSASGT
Trigger: AGTTCCCGAAGCTGACCATCATAGGGGAAGAGGACC...ATACTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR TCA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTGGTCCTCTTCCCCTATaGTGGTCAGCTTCGGGAACT +
Preference number: 4 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIGPLPL*WSASGT
Trigger: AGTTCCCGAAGCTGACCATCATAGGGGAAGAGGACC...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR TCA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCGGAAATGCAGTCTGTaGCCAGCTGGTTGCTATGGG +
Preference number: 4 (lower is better)
Translates to: KSLINDKCRQSSNCSISNRKCSL*PAGCYG
Trigger: CCCATAGCAACCAGCTGGTCACAGACTGCATTTCCG...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAAGGTCTTCTGCACGATaGCCAGGTCTCCTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSRSSAR*PGLLQQ
Trigger: TTGCTGAAGGAGACCTGGGCATCGTGCAGAAGACCT...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp CTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTATTTGATAGCACTGTACTaGGAGGGGCACGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: LINDKCRQSSNCSISNQYLIALY*EGHGCF
Trigger: GAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAA...ATACTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTGTGGTTGTGATAATGTaGTTCCCGGCAGGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIVVVIM*FPAGAS
Trigger: GGAAGCCCCTGCCGGGAAGCACATTATCACAACCAC...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp CAACTGAAATTCTGGAGTAACTTAAGACTCTGTGCCCTGAAGAAATCTGGTTTAGATAATCTTGTTTCCTaGTCCTCCCACTCGCAGCAC +
Preference number: 4 (lower is better)
Translates to: QLKFWSNLRLCALKKSGLDNLVS*SSHSQH
Trigger: GTGCTGCGAGTGGGAGGAGCAGGAAACAAGATTATC...TAAACCAGATTTCTTCAGGGCACAGAGTCTTAAGTTACTCCAGAATTTCAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR GCA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGGATAATCTTGTTTCCTaGTCCTCCCACTCGCAGCAC +
Preference number: 4 (lower is better)
Translates to: SLINDKCRQSSNCSISNQDNLVS*SSHSQH
Trigger: GTGCTGCGAGTGGGAGGAGCAGGAAACAAGATTATC...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp AACCCTTTTTCATTTCTTCACTTAGAAATAGTAACATTTGAGCCAGGTGTGGTGTTCCCTCCCACAGCATaGAAGATAACTTCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: NPFSFLHLEIVTFEPGVVFPPTA*KITSGA
Trigger: TGCCCCGGAAGTTATCTTGCATGCTGTGGGAGGGAA...CACCACACCTGGCTCAAATGTTACTATTTCTAAGTGAAGAAATGAAAAAGGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR GCA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCATTCCCTCCCACAGCATaGAAGATAACTTCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSFPPTA*KITSGA
Trigger: TGCCCCGGAAGTTATCTTGCATGCTGTGGGAGGGAA...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR TCA 90 bp GTTCAATTAGTAATCAGTATTAAGATGTGTTCCTTTGAACCAAGGCCTCTGGGTAGCGATAGAATATGCTaGAGCTACCAGCCGCATCAA +
Preference number: 4 (lower is better)
Translates to: VQLVISIKMCSFEPRPLGSDRIC*SYQPHQ
Trigger: TTGATGCGGCTGGTAGCTTCAGCATATTCTATCGCT...ACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAATACTGATTACTAATTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp CTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTATAGGTCTTCTGCACGATaGCCAGGTCTCCTTCAGCAA +
Preference number: 4 (lower is better)
Translates to: LINDKCRQSSNCSISNQYRSSAR*PGLLQQ
Trigger: TTGCTGAAGGAGACCTGGGCATCGTGCAGAAGACCT...ATACTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTGAGCATATGCTCATCTaGACCAAGCGGTCGGCTTTG +
Preference number: 4 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIEHMLI*TKRSAL
Trigger: CAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTC...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAGATAATCTTGTTTCCTaGTCCTCCCACTCGCAGCAC +
Preference number: 4 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSDNLVS*SSHSQH
Trigger: GTGCTGCGAGTGGGAGGAGCAGGAAACAAGATTATC...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp GAAGAAATCTGGTTTATCAGCAGGAATGTTGACTGCACAAATGACTTGGACAGTCTTACACCCAGGACTTaGAAACACATAAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: EEIWFISRNVDCTNDLDSLTPRT*KHISRS
Trigger: GCTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAG...ACTGTCCAAGTCATTTGTGCAGTCAACATTCCTGCTGATAAACCAGATTTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR GCA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTTTCCCTCCCACAGCATaGAAGATAACTTCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIFPPTA*KITSGA
Trigger: TGCCCCGGAAGTTATCTTGCATGCTGTGGGAGGGAA...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CCA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGACCAGCTGGTTGCTATaGGATCTGGTGGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: SLINDKCRQSSNCSISNQTSWLL*DLVVVI
Trigger: TATCACAACCACCAGATCCCATAGCAACCAGCTGGT...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CCA 90 bp GTTCAATTAGTAATCAGTATTAAGATGTGTTCCTTTGAACCAAGGCCTCTGGGTACCAGCTGGTTGCTATaGGATCTGGTGGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: VQLVISIKMCSFEPRPLGTSWLL*DLVVVI
Trigger: TATCACAACCACCAGATCCCATAGCAACCAGCTGGT...ACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAATACTGATTACTAATTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp CTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTATACCTCCTTGTTGTACTaGAGGGCATTCCCATGGATG +
Preference number: 4 (lower is better)
Translates to: LINDKCRQSSNCSISNQYTSLLY*RAFPWM
Trigger: CATCCATGGGAATGCCCTGCAGTACAACAAGGAGGT...ATACTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATACCTCCTTGTTGTACTaGAGGGCATTCCCATGGATG +
Preference number: 4 (lower is better)
Translates to: KSLINDKCRQSSNCSISNTSLLY*RAFPWM
Trigger: CATCCATGGGAATGCCCTGCAGTACAACAAGGAGGT...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCACTTACACCCAGGACTTaGAAACACATAAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSLTPRT*KHISRS
Trigger: GCTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAG...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CCA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATACCAGCTGGTTGCTATaGGATCTGGTGGTTGTGATA +
Preference number: 4 (lower is better)
Translates to: KSLINDKCRQSSNCSISNTSWLL*DLVVVI
Trigger: TATCACAACCACCAGATCCCATAGCAACCAGCTGGT...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR GCA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCTTACACCCAGGACTTaGAAACACATAAGCAGAAGC +
Preference number: 4 (lower is better)
Translates to: KSLINDKCRQSSNCSISNLTPRT*KHISRS
Trigger: GCTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAG...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
3UTR CAA 72 bp TGGTTTATCAGCAGGAATGTTGACTGCACAAATGACTaGGACAGTCATTTGAAACTAACCCTTTTTCATTTC +
Preference number: 4 (lower is better)
Translates to: WFISRNVDCTND*DSHLKLTLFHF
Trigger: GAAATGAAAAAGGGTTAGTTTCAAATGACTGTCCAAGTCATTTGTGCAGTCAACATTCCTGCTGATAAACCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR TCA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCATAAGCAATCCCAATaGGAACTGTTACATTGTCAA +
Preference number: 4 (lower is better)
Translates to: KSLINDKCRQSSNCSISNHKQSQ*ELLHCQ
Trigger: TTGACAATGTAACAGTTCTCATTGGGATTGCTTATG...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 90 bp GCTGAAACCCAAAAGCACCCAAACCCAGAACTCCCCAGATGGTCCTaGCCAGCGCCGCGTCGGGTCCTGCCTGGGCTTCATTCCCGTGCT +
Preference number: 5 (lower is better)
Translates to: AETQKHPNPELPRWS*PAPRRVLPGLHSRA
Trigger: AGCACGGGAATGAAGCCCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTGGGGAGTTCTGGGTTTGGGTGCTTTTGGGTTTCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS GCA 90 bp GTCAGCTTCGGGAACTTCCGGGCCAGGGAAGAGCATATGCTCATCTaGACCAAGCGGTCGGCTTTGGTCTGCAGGTCGGTGGCCGAGGTC +
Preference number: 5 (lower is better)
Translates to: VSFGNFRAREEHMLI*TKRSALVCRSVAEV
Trigger: GACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTCCCTGGCCCGGAAGTTCCCGAAGCTGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS CCA 90 bp GGGCCAGGGAAGAGCATATGCTCATCTGCACCAAGCGGTCGGCTTTaGTCTGCAGGTCGGTGGCCGAGGTCTTCTGCACGATGCCCAGGT +
Preference number: 5 (lower is better)
Translates to: GPGKSICSSAPSGRL*SAGRWPRSSARCPG
Trigger: ACCTGGGCATCGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTCCCTGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS GCA 90 bp AGGGAAGAGCATATGCTCATCTGCACCAAGCGGTCGGCTTTGGTCTaGAGGTCGGTGGCCGAGGTCTTCTGCACGATGCCCAGGTCTCCT +
Preference number: 5 (lower is better)
Translates to: REEHMLICTKRSALV*RSVAEVFCTMPRSP
Trigger: AGGAGACCTGGGCATCGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS GCA 90 bp GCTGAAACCCAAAAGCACCCAAACCCAGAACTCCCCAGATGGTCCTaGCCAGCGCCGCGTCGGGTCCTGCCTGGTAGTTGTAATACGGCT +
Preference number: 5 (lower is better)
Translates to: AETQKHPNPELPRWS*PAPRRVLPGSCNTA
Trigger: AGCCGTATTACAACTACCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTGGGGAGTTCTGGGTTTGGGTGCTTTTGGGTTTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
CDS GCA 90 bp GGGTCAACCCAAACCACAAGGTCTTCCTCCTTGATAGCACTGTACTaGGAGGGGCACGGCTGCTTCAGGATCTCCTCCCACTGCCCGTCT +
Preference number: 5 (lower is better)
Translates to: GSTQTTRSSSLIALY*EGHGCFRISSHCPS
Trigger: AGACGGGCAGTGGGAGGAGATCCTGAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGTGGTTTGGGTTGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS TCA 90 bp GGCTGCTTCAGGATCTCCTCCCACTGCCCGTCTTCAATCAGCTCTTaGTCCACTTCCCCAGGAGGCAGGTCCTCTTCCCCTATGATGGTC +
Preference number: 5 (lower is better)
Translates to: GCFRISSHCPSSISS*STSPGGRSSSPMMV
Trigger: GACCATCATAGGGGAAGAGGACCTGCCTCCTGGGGAAGTGGATCAAGAGCTGATTGAAGACGGGCAGTGGGAGGAGATCCTGAAGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS TCA 90 bp CCAGCGCCGCGTCGGGTCCTGCCTGGGCTTCATTCCCGTGCTCTCTaGGCTTCTCCTTTTCATTGTTCTGGTAGTTGTAATACGGCTGGT +
Preference number: 5 (lower is better)
Translates to: PAPRRVLPGLHSRAL*ASPFHCSGSCNTAG
Trigger: ACCAGCCGTATTACAACTACCAGAACAATGAAAAGGAGAAGCTCAGAGAGCACGGGAATGAAGCCCAGGCAGGACCCGACGCGGCGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS CCA 90 bp TCGGGGTTCATGGCGGAAATGCAGTCTGTGACCAGCTGGTTGCTATaGGATCTGGTGGTTGTGATAATGTGCTTCCCGGCAGGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: SGFMAEMQSVTSWLL*DLVVVIMCFPAGAS
Trigger: GGAAGCCCCTGCCGGGAAGCACATTATCACAACCACCAGATCCCATAGCAACCAGCTGGTCACAGACTGCATTTCCGCCATGAACCCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CCA 90 bp AGCACGGTGTCGGGGTTCATGGCGGAAATGCAGTCTGTGACCAGCTaGTTGCTATGGGATCTGGTGGTTGTGATAATGTGCTTCCCGGCA +
Preference number: 5 (lower is better)
Translates to: STVSGFMAEMQSVTS*LLWDLVVVIMCFPA
Trigger: TGCCGGGAAGCACATTATCACAACCACCAGATCCCATAGCAACCAGCTGGTCACAGACTGCATTTCCGCCATGAACCCCGACACCGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 90 bp GTCGGGTCCTGCCTGGTAGTTGTAATACGGCTGGTTGATGATGCCTaGGATGGCCTTTCCTTCATAAGCAATCCCAATGAGAACTGTTAC +
Preference number: 5 (lower is better)
Translates to: VGSCLVVVIRLVDDA*DGLSFISNPNENCY
Trigger: GTAACAGTTCTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCCGTATTACAACTACCAGGCAGGACCCGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
CDS-3UTR CAA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGACCAAGCGGTCGGCTTaGGTCTGCAGGTCGGTGGCC +
Preference number: 5 (lower is better)
Translates to: SLINDKCRQSSNCSISNQTKRSA*VCRSVA
Trigger: GGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGT...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS GCA 90 bp GATAACTTCCGGGGCACAAGTGTCCCACTTCTTACACCCAGGACTTaGAAACACATAAGCAGAAGCTTTGCCTTCGATCAGCTGGATAAT +
Preference number: 5 (lower is better)
Translates to: DNFRGTSVPLLTPRT*KHISRSFAFDQLDN
Trigger: ATTATCCAGCTGATCGAAGGCAAAGCTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAGAAGTGGGACACTTGTGCCCCGGAAGTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CCA 90 bp GAGTTCATATGTTTCACCTCCTTGTTGTACTGCAGGGCATTCCCATaGATGTCTGTCAACTTCCCTCCCACAGCATGCAAGATAACTTCC +
Preference number: 5 (lower is better)
Translates to: EFICFTSLLYCRAFP*MSVNFPPTACKITS
Trigger: GGAAGTTATCTTGCATGCTGTGGGAGGGAAGTTGACAGACATCCATGGGAATGCCCTGCAGTACAACAAGGAGGTGAAACATATGAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp CTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTATACCAAGCGGTCGGCTTaGGTCTGCAGGTCGGTGGCC +
Preference number: 5 (lower is better)
Translates to: LINDKCRQSSNCSISNQYTKRSA*VCRSVA
Trigger: GGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGT...ATACTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp GTTCAATTAGTAATCAGTATTAAGATGTGTTCCTTTGAACCAAGGCCTCTGGGTGTCTTCAATCAGCTCTaGATCCACTTCCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: VQLVISIKMCSFEPRPLGVFNQL*IHFPRR
Trigger: CCTCCTGGGGAAGTGGATCAAGAGCTGATTGAAGAC...ACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAATACTGATTACTAATTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp GTTCAATTAGTAATCAGTATTAAGATGTGTTCCTTTGAACCAAGGCCTCTGGGTTCTGTGACCAGCTGGTaGCTATGGGATCTGGTGGTT +
Preference number: 5 (lower is better)
Translates to: VQLVISIKMCSFEPRPLGSVTSW*LWDLVV
Trigger: AACCACCAGATCCCATAGCAACCAGCTGGTCACAGA...ACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAATACTGATTACTAATTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTCTGTGACCAGCTGGTaGCTATGGGATCTGGTGGTT +
Preference number: 5 (lower is better)
Translates to: SLINDKCRQSSNCSISNQSVTSW*LWDLVV
Trigger: AACCACCAGATCCCATAGCAACCAGCTGGTCACAGA...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 90 bp CTTTTCATTGTTCTGGTAGTTGTAATACGGCTGGTTGATGATGCCTaGGATGGCCTTTCCTTCATAAGCAATCCCAATGAGAACTGTTAC +
Preference number: 5 (lower is better)
Translates to: LFIVLVVVIRLVDDA*DGLSFISNPNENCY
Trigger: GTAACAGTTCTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCCGTATTACAACTACCAGAACAATGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAGTCTTCAATCAGCTCTaGATCCACTTCCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSVFNQL*IHFPRR
Trigger: CCTCCTGGGGAAGTGGATCAAGAGCTGATTGAAGAC...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTGTCTTCAATCAGCTCTaGATCCACTTCCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIVFNQL*IHFPRR
Trigger: CCTCCTGGGGAAGTGGATCAAGAGCTGATTGAAGAC...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp AACCCTTTTTCATTTCTTCACTTAGAAATAGTAACATTTGAGCCAGGTGTGGTGACAAGGTCTTCCTCCTaGATAGCACTGTACTGCGAG +
Preference number: 5 (lower is better)
Translates to: NPFSFLHLEIVTFEPGVVTRSSS*IALYCE
Trigger: CTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGT...CACCACACCTGGCTCAAATGTTACTATTTCTAAGTGAAGAAATGAAAAAGGGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027916.13
CDS-3UTR CAA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATTCTGTGACCAGCTGGTaGCTATGGGATCTGGTGGTT +
Preference number: 5 (lower is better)
Translates to: KSLINDKCRQSSNCSISNSVTSW*LWDLVV
Trigger: AACCACCAGATCCCATAGCAACCAGCTGGTCACAGA...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp GTTCAATTAGTAATCAGTATTAAGATGTGTTCCTTTGAACCAAGGCCTCTGGGTATCAGCTGGATAATCTaGTTTCCTGCTCCTCCCACT +
Preference number: 5 (lower is better)
Translates to: VQLVISIKMCSFEPRPLGISWII*FPAPPT
Trigger: AGTGGGAGGAGCAGGAAACAAGATTATCCAGCTGAT...ACCCAGAGGCCTTGGTTCAAAGGAACACATCTTAATACTGATTACTAATTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTACAAGGTCTTCCTCCTaGATAGCACTGTACTGCGAG +
Preference number: 5 (lower is better)
Translates to: TNKSLINDKCRQSSNCSITRSSS*IALYCE
Trigger: CTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGT...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp CTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTATACAAGGTCTTCCTCCTaGATAGCACTGTACTGCGAG +
Preference number: 5 (lower is better)
Translates to: LINDKCRQSSNCSISNQYTRSSS*IALYCE
Trigger: CTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGT...ATACTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGTCTTACACCCAGGACTaGCAAACACATAAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: SLINDKCRQSSNCSISNQSYTQD*QTHKQK
Trigger: CTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAGA...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGATATGTTTCACCTCCTaGTTGTACTGCAGGGCATTC +
Preference number: 5 (lower is better)
Translates to: SLINDKCRQSSNCSISNQICFTS*LYCRAF
Trigger: GAATGCCCTGCAGTACAACAAGGAGGTGAAACATAT...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTATCAGCTGGATAATCTaGTTTCCTGCTCCTCCCACT +
Preference number: 5 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIISWII*FPAPPT
Trigger: AGTGGGAGGAGCAGGAAACAAGATTATCCAGCTGAT...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCATCTTACACCCAGGACTaGCAAACACATAAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSSYTQD*QTHKQK
Trigger: CTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAGA...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATATGTTTCACCTCCTaGTTGTACTGCAGGGCATTC +
Preference number: 5 (lower is better)
Translates to: TTNKSLINDKCRQSSNCSICFTS*LYCRAF
Trigger: GAATGCCCTGCAGTACAACAAGGAGGTGAAACATAT...TGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp TCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATCAGATGAGAACTGTTACATaGTCAAGAAGACCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: SLINDKCRQSSNCSISNQMRTVT*SRRPSV
Trigger: CACTGAAGGTCTTCTTGACAATGTAACAGTTCTCAT...CTGATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATTCTTACACCCAGGACTaGCAAACACATAAGCAGAAG +
Preference number: 5 (lower is better)
Translates to: KSLINDKCRQSSNCSISNSYTQD*QTHKQK
Trigger: CTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAGA...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTATATGTTTCACCTCCTaGTTGTACTGCAGGGCATTC +
Preference number: 5 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIICFTS*LYCRAF
Trigger: GAATGCCCTGCAGTACAACAAGGAGGTGAAACATAT...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp ACTAATAAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTATGAGAACTGTTACATaGTCAAGAAGACCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: TNKSLINDKCRQSSNCSIMRTVT*SRRPSV
Trigger: CACTGAAGGTCTTCTTGACAATGTAACAGTTCTCAT...AATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTTATTAGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS-3UTR CAA 90 bp AAATCGCTGATCAATGATAAATGCAGGCAGAGCTCCAATTGTTCAATTAGTAATATGAGAACTGTTACATaGTCAAGAAGACCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: KSLINDKCRQSSNCSISNMRTVT*SRRPSV
Trigger: CACTGAAGGTCTTCTTGACAATGTAACAGTTCTCAT...ATTACTAATTGAACAATTGGAGCTCTGCCTGCATTTATCATTGATCAGCGATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 72 bp CAAAAGCACCCAAACCCAGAACTCCCCAGATGGTCCTaGCCAGCGCCGCGTCGGGTCCTGCCTGGGCTTCAT +
Preference number: 6 (lower is better)
Translates to: QKHPNPELPRWS*PAPRRVLPGLH
Trigger: ATGAAGCCCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTGGGGAGTTCTGGGTTTGGGTGCTTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS CCA 72 bp CAGATGGTCCTGCCCAGCGCCGCGTCGGGTCCTGCCTaGGCTTCATTCCCGTGCTCTCTGAGCTTCTCCTTT +
Preference number: 6 (lower is better)
Translates to: QMVLPSAASGPA*ASFPCSLSFSF
Trigger: AAAGGAGAAGCTCAGAGAGCACGGGAATGAAGCCCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS CAA 90 bp CGGGCCAGGGAAGAGCATATGCTCATCTGCACCAAGCGGTCGGCTTaGGTCTGCAGGTCGGTGGCCGAGGTCTTCTGCACGATGCCCAGG +
Preference number: 6 (lower is better)
Translates to: RAREEHMLICTKRSA*VCRSVAEVFCTMPR
Trigger: CCTGGGCATCGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTCCCTGGCCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS GCA 72 bp TCCCCAGATGGTCCTGCCCAGCGCCGCGTCGGGTCCTaGCTGGTAGTTGTAATACGGCTGGTTGATGATGCC +
Preference number: 6 (lower is better)
Translates to: SPDGPAQRRVGS*LVVVIRLVDDA
Trigger: GGCATCATCAACCAGCCGTATTACAACTACCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
CDS GCA 72 bp CAAAAGCACCCAAACCCAGAACTCCCCAGATGGTCCTaGCCAGCGCCGCGTCGGGTCCTGCCTGGTAGTTGT +
Preference number: 6 (lower is better)
Translates to: QKHPNPELPRWS*PAPRRVLPGSC
Trigger: ACAACTACCAGGCAGGACCCGACGCGGCGCTGGGCAGGACCATCTGGGGAGTTCTGGGTTTGGGTGCTTTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
CDS CCA 72 bp TCTGCACCAAGCGGTCGGCTTTGGTCTGCAGGTCGGTaGCCGAGGTCTTCTGCACGATGCCCAGGTCTCCTT +
Preference number: 6 (lower is better)
Translates to: SAPSGRLWSAGR*PRSSARCPGLL
Trigger: AAGGAGACCTGGGCATCGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS TCA 72 bp GATCCACTTCCCCAGGAGGCAGGTCCTCTTCCCCTATaGTGGTCAGCTTCGGGAACTTCCGGGCCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: DPLPQEAGPLPL*WSASGTSGPGK
Trigger: CTTCCCTGGCCCGGAAGTTCCCGAAGCTGACCATCATAGGGGAAGAGGACCTGCCTCCTGGGGAAGTGGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS GCA 72 bp CATATGCTCATCTGCACCAAGCGGTCGGCTTTGGTCTaGAGGTCGGTGGCCGAGGTCTTCTGCACGATGCCC +
Preference number: 6 (lower is better)
Translates to: HMLICTKRSALV*RSVAEVFCTMP
Trigger: GGGCATCGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS GCA 72 bp GGGAACTTCCGGGCCAGGGAAGAGCATATGCTCATCTaGACCAAGCGGTCGGCTTTGGTCTGCAGGTCGGTG +
Preference number: 6 (lower is better)
Translates to: GNFRAREEHMLI*TKRSALVCRSV
Trigger: CACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTCCCTGGCCCGGAAGTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS CAA 72 bp GAAGAGCATATGCTCATCTGCACCAAGCGGTCGGCTTaGGTCTGCAGGTCGGTGGCCGAGGTCTTCTGCACG +
Preference number: 6 (lower is better)
Translates to: EEHMLICTKRSA*VCRSVAEVFCT
Trigger: CGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS CAA 90 bp CGGCTGCTTCAGGATCTCCTCCCACTGCCCGTCTTCAATCAGCTCTaGATCCACTTCCCCAGGAGGCAGGTCCTCTTCCCCTATGATGGT +
Preference number: 6 (lower is better)
Translates to: RLLQDLLPLPVFNQL*IHFPRRQVLFPYDG
Trigger: ACCATCATAGGGGAAGAGGACCTGCCTCCTGGGGAAGTGGATCAAGAGCTGATTGAAGACGGGCAGTGGGAGGAGATCCTGAAGCAGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 72 bp TCAGCTTCGGGAACTTCCGGGCCAGGGAAGAGCATATaGTCATCTGCACCAAGCGGTCGGCTTTGGTCTGCA +
Preference number: 6 (lower is better)
Translates to: SASGTSGPGKSI*SSAPSGRLWSA
Trigger: TGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTTCCCTGGCCCGGAAGTTCCCGAAGCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS GCA 72 bp TCCTCCTTGATAGCACTGTACTGCGAGGGGCACGGCTaGTTCAGGATCTCCTCCCACTGCCCGTCTTCAATC +
Preference number: 6 (lower is better)
Translates to: SSLIALYCEGHG*FRISSHCPSSI
Trigger: GATTGAAGACGGGCAGTGGGAGGAGATCCTGAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAAGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CCA 72 bp AAGAGCATATGCTCATCTGCACCAAGCGGTCGGCTTTaGTCTGCAGGTCGGTGGCCGAGGTCTTCTGCACGA +
Preference number: 6 (lower is better)
Translates to: KSICSSAPSGRL*SAGRWPRSSAR
Trigger: TCGTGCAGAAGACCTCGGCCACCGACCTGCAGACCAAAGCCGACCGCTTGGTGCAGATGAGCATATGCTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS CAA 90 bp ACGGTGTCGGGGTTCATGGCGGAAATGCAGTCTGTGACCAGCTGGTaGCTATGGGATCTGGTGGTTGTGATAATGTGCTTCCCGGCAGGG +
Preference number: 6 (lower is better)
Translates to: TVSGFMAEMQSVTSW*LWDLVVVIMCFPAG
Trigger: CCCTGCCGGGAAGCACATTATCACAACCACCAGATCCCATAGCAACCAGCTGGTCACAGACTGCATTTCCGCCATGAACCCCGACACCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 72 bp CAAACCACAAGGTCTTCCTCCTTGATAGCACTGTACTaGGAGGGGCACGGCTGCTTCAGGATCTCCTCCCAC +
Preference number: 6 (lower is better)
Translates to: QTTRSSSLIALY*EGHGCFRISSH
Trigger: GTGGGAGGAGATCCTGAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGTGGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CAA 90 bp TTGGTGCCATCTAAGGGGTCAACCCAAACCACAAGGTCTTCCTCCTaGATAGCACTGTACTGCGAGGGGCACGGCTGCTTCAGGATCTCC +
Preference number: 6 (lower is better)
Translates to: LVPSKGSTQTTRSSS*IALYCEGHGCFRIS
Trigger: GGAGATCCTGAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGTGGTTTGGGTTGACCCCTTAGATGGCACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CAA 72 bp TCTAAGGGGTCAACCCAAACCACAAGGTCTTCCTCCTaGATAGCACTGTACTGCGAGGGGCACGGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: SKGSTQTTRSSS*IALYCEGHGCF
Trigger: GAAGCAGCCGTGCCCCTCGCAGTACAGTGCTATCAAGGAGGAAGACCTTGTGGTTTGGGTTGACCCCTTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CAA 90 bp AGTGCAGCCAGGACACCGGCAGAGTTCATATGTTTCACCTCCTTGTaGTACTGCAGGGCATTCCCATGGATGTCTGTCAACTTCCCTCCC +
Preference number: 6 (lower is better)
Translates to: SAARTPAEFICFTSL*YCRAFPWMSVNFPP
Trigger: GGGAGGGAAGTTGACAGACATCCATGGGAATGCCCTGCAGTACAACAAGGAGGTGAAACATATGAACTCTGCCGGTGTCCTGGCTGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CCA 72 bp ATGGCGGAAATGCAGTCTGTGACCAGCTGGTTGCTATaGGATCTGGTGGTTGTGATAATGTGCTTCCCGGCA +
Preference number: 6 (lower is better)
Translates to: MAEMQSVTSWLL*DLVVVIMCFPA
Trigger: TGCCGGGAAGCACATTATCACAACCACCAGATCCCATAGCAACCAGCTGGTCACAGACTGCATTTCCGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CAA 72 bp GCCAGGACACCGGCAGAGTTCATATGTTTCACCTCCTaGTTGTACTGCAGGGCATTCCCATGGATGTCTGTC +
Preference number: 6 (lower is better)
Translates to: ARTPAEFICFTS*LYCRAFPWMSV
Trigger: GACAGACATCCATGGGAATGCCCTGCAGTACAACAAGGAGGTGAAACATATGAACTCTGCCGGTGTCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS TCA 72 bp GACTATGGTTCCTGCCTTTTGAGCGATAGAATATGCTaGAGCTACCAGCCGCATCAACACGGTGTGGCTGGA +
Preference number: 6 (lower is better)
Translates to: DYGSCLLSDRIC*SYQPHQHGVAG
Trigger: TCCAGCCACACCGTGTTGATGCGGCTGGTAGCTTCAGCATATTCTATCGCTCAAAAGGCAGGAACCATAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000151769.2
ENSMUST00000210277.2
CDS TCA 72 bp CGTCGGGTCCTGCCTGGGCTTCATTCCCGTGCTCTCTaGGCTTCTCCTTTTCATTGTTCTGGTAGTTGTAAT +
Preference number: 6 (lower is better)
Translates to: RRVLPGLHSRAL*ASPFHCSGSCN
Trigger: ATTACAACTACCAGAACAATGAAAAGGAGAAGCTCAGAGAGCACGGGAATGAAGCCCAGGCAGGACCCGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS GCA 72 bp CGGGGCACAAGTGTCCCACTTCTTACACCCAGGACTTaGAAACACATAAGCAGAAGCTTTGCCTTCGATCAG +
Preference number: 6 (lower is better)
Translates to: RGTSVPLLTPRT*KHISRSFAFDQ
Trigger: CTGATCGAAGGCAAAGCTTCTGCTTATGTGTTTGCAAGTCCTGGGTGTAAGAAGTGGGACACTTGTGCCCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CCA 72 bp TGTTTCACCTCCTTGTTGTACTGCAGGGCATTCCCATaGATGTCTGTCAACTTCCCTCCCACAGCATGCAAG +
Preference number: 6 (lower is better)
Translates to: CFTSLLYCRAFP*MSVNFPPTACK
Trigger: CTTGCATGCTGTGGGAGGGAAGTTGACAGACATCCATGGGAATGCCCTGCAGTACAACAAGGAGGTGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CAA 72 bp AGGACACCGGCAGAGTTCATATGTTTCACCTCCTTGTaGTACTGCAGGGCATTCCCATGGATGTCTGTCAAC +
Preference number: 6 (lower is better)
Translates to: RTPAEFICFTSL*YCRAFPWMSVN
Trigger: GTTGACAGACATCCATGGGAATGCCCTGCAGTACAACAAGGAGGTGAAACATATGAACTCTGCCGGTGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 72 bp TGCCTGGTAGTTGTAATACGGCTGGTTGATGATGCCTaGGATGGCCTTTCCTTCATAAGCAATCCCAATGAG +
Preference number: 6 (lower is better)
Translates to: CLVVVIRLVDDA*DGLSFISNPNE
Trigger: CTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCCGTATTACAACTACCAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
CDS CAA 90 bp CCAATGAGAACTGTTACATTGTCAAGAAGACCTTCAGTGTACTCCTaGGTGCCATCTAAGGGGTCAACCCAAACCACAAGGTCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: PMRTVTLSRRPSVYS*VPSKGSTQTTRSSS
Trigger: GGAGGAAGACCTTGTGGTTTGGGTTGACCCCTTAGATGGCACCAAGGAGTACACTGAAGGTCTTCTTGACAATGTAACAGTTCTCATTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 72 bp GTTCTGGTAGTTGTAATACGGCTGGTTGATGATGCCTaGGATGGCCTTTCCTTCATAAGCAATCCCAATGAG +
Preference number: 6 (lower is better)
Translates to: VLVVVIRLVDDA*DGLSFISNPNE
Trigger: CTCATTGGGATTGCTTATGAAGGAAAGGCCATCGCAGGCATCATCAACCAGCCGTATTACAACTACCAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210277.2
CDS CCA 72 bp CTGTTACATTGTCAAGAAGACCTTCAGTGTACTCCTTaGTGCCATCTAAGGGGTCAACCCAAACCACAAGGT +
Preference number: 6 (lower is better)
Translates to: LLHCQEDLQCTP*CHLRGQPKPQG
Trigger: ACCTTGTGGTTTGGGTTGACCCCTTAGATGGCACCAAGGAGTACACTGAAGGTCTTCTTGACAATGTAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS CAA 72 bp ACTGTTACATTGTCAAGAAGACCTTCAGTGTACTCCTaGGTGCCATCTAAGGGGTCAACCCAAACCACAAGG +
Preference number: 6 (lower is better)
Translates to: TVTLSRRPSVYS*VPSKGSTQTTR
Trigger: CCTTGTGGTTTGGGTTGACCCCTTAGATGGCACCAAGGAGTACACTGAAGGTCTTCTTGACAATGTAACAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2
CDS GCA 72 bp TTACATTGTCAAGAAGACCTTCAGTGTACTCCTTGGTaGCATCTAAGGGGTCAACCCAAACCACAAGGTCTT +
Preference number: 6 (lower is better)
Translates to: LHCQEDLQCTPW*HLRGQPKPQGL
Trigger: AAGACCTTGTGGTTTGGGTTGACCCCTTAGATGGCACCAAGGAGTACACTGAAGGTCTTCTTGACAATGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027916.13
ENSMUST00000110965.2
ENSMUST00000210277.2