Pregenerated sensors for BPIFC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050108Ensembl transcript IDs: ENSMUST00000061699.12, ENSMUST00000105304.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCAGACACACCAGAAGAGGGCCTCAGATCCCATTACAGATGGTTGTaGGCTACCGTGTGGTGGCTGGTTATTGAACTCAGGACCTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: SDTPEEGLRSHYRWL*ATVWWLVIELRTSG Trigger: TCCAGAGGTCCTGAGTTCAATAACCAGCCACCACACGGTAGCTCACAACCATCTGTAATGGGATCTGAGGCCCTCTTCTGGTGTGTCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR-3UTR CCA 90 bp | ACCAGAAGAGGGCCTCAGATCCCATTACAGATGGTTGTGAGCTACCGTGTGGTGCAGGTTTCTGGTTTCTaGGGGACTGAAGGCTGTTTA | + |
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Preference number: 2 (lower is better) Translates to: TRRGPQIPLQMVVSYRVVQVSGF*GTEGCL Trigger: TAAACAGCCTTCAGTCCCCCAGAAACCAGAAACCTG...CACCACACGGTAGCTCACAACCATCTGTAATGGGATCTGAGGCCCTCTTCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACCTACCAATGCAAATACAGACAAGTTCCTTACAACCTTACCACCAATGTGCTTACACATaGTCACATACACAGACCCCA | + |
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Preference number: 2 (lower is better) Translates to: THTHLPMQIQTSSLQPYHQCAYT*SHTQTP Trigger: TGGGGTCTGTGTATGTGAGCATGTGTAAGCACATTG...GTGGTAAGGTTGTAAGGAACTTGTCTGTATTTGCATTGGTAGGTGTGTGTGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR-3UTR GCA 90 bp | AAAGATTTAAGGGGCTCTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAACACACACCTACCAATaGAAATACAGACAAGTTCCT | + |
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Preference number: 2 (lower is better) Translates to: KDLRGSRLPFSIGVCRTSTHTYQ*KYRQVP Trigger: AGGAACTTGTCTGTATTTGCATTGGTAGGTGTGTGT...TGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAGAGCCCCTTAAATCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR TCA 72 bp | CCAGAAGAGGGCCTCAGATCCCATTACAGATGGTTGTaGGCTACCGTGTGGTGGCTGGTTATTGAACTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PEEGLRSHYRWL*ATVWWLVIELR Trigger: CCTGAGTTCAATAACCAGCCACCACACGGTAGCTCACAACCATCTGTAATGGGATCTGAGGCCCTCTTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR CCA 72 bp | GGATGCACGGTCTTCATCTTCCAGGTTTCTGGTTTCTaGGGGACTGAAGGCTGTTTACTTCCTGGGGTGTAT | + |
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Preference number: 3 (lower is better) Translates to: GCTVFIFQVSGF*GTEGCLLPGVY Trigger: ATACACCCCAGGAAGTAAACAGCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGACCGTGCATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR CCA 72 bp | CCCATTACAGATGGTTGTGAGCTACCGTGTGGTGGCTaGTTATTGAACTCAGGACCTCTGGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: PITDGCELPCGG*LLNSGPLEEQS Trigger: TGACTGCTCTTCCAGAGGTCCTGAGTTCAATAACCAGCCACCACACGGTAGCTCACAACCATCTGTAATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR TCA 72 bp | CAGATGGTTGTGAGCTACCGTGTGGTGGCTGGTTATTaGACTCAGGACCTCTGGAAGAGCAGTCAATGTTCT | + |
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Preference number: 3 (lower is better) Translates to: QMVVSYRVVAGY*TQDLWKSSQCS Trigger: AGAACATTGACTGCTCTTCCAGAGGTCCTGAGTTCAATAACCAGCCACCACACGGTAGCTCACAACCATCTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR TCA 72 bp | AGGACCTCTGGAAGAGCAGTCAATGTTCTAAACTGCTaGGCCATCTCTCCAGCCCTCATTTCATCCAATCAC | + |
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Preference number: 3 (lower is better) Translates to: RTSGRAVNVLNC*AISPALISSNH Trigger: GTGATTGGATGAAATGAGGGCTGGAGAGATGGCTCAGCAGTTTAGAACATTGACTGCTCTTCCAGAGGTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| 3UTR-3UTR CAA 90 bp | AAACTGCTGAGCCATCTCTCCAGCCCTCATTTCATCCAATCACTGAAAGGACACCCCACTCCCACTACCTaGTTCCTGTTCATCATTTTA | + |
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Preference number: 3 (lower is better) Translates to: KLLSHLSSPHFIQSLKGHPTPTT*FLFIIL Trigger: TAAAATGATGAACAGGAACAAGGTAGTGGGAGTGGG...GTGTCCTTTCAGTGATTGGATGAAATGAGGGCTGGAGAGATGGCTCAGCAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | ACCAGAAGAGGGCCTCAGATCCCATTACAGATGGTTGTGAGCTACCGTGTGGTGCTGCTCTCTGGGAGATaGAAGGGAGCTGGTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: TRRGPQIPLQMVVSYRVVLLSGR*KGAGVK Trigger: CTTCACACCAGCTCCCTTCCATCTCCCAGAGAGCAG...CACCACACGGTAGCTCACAACCATCTGTAATGGGATCTGAGGCCCTCTTCTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CCAGGATGCACGGTCTTCATCTTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCTTGAACTGTTCCACTTaGCTGATGGCAATGGGACAA | + |
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Preference number: 4 (lower is better) Translates to: PGCTVFIFQVSGFWGTEGLNCST*LMAMGQ Trigger: TTGTCCCATTGCCATCAGCCAAGTGGAACAGTTCAA...GCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGACCGTGCATCCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | CTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAGTCTTTGCCGAAGTTTGGTTGCTCAGTGCTCTaGTGCCTACCCCAGGTACGA | + |
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Preference number: 4 (lower is better) Translates to: LGSLLVLVFVELQSLPKFGCSVL*CLPQVR Trigger: TCGTACCTGGGGTAGGCATCAGAGCACTGAGCAACC...AAACTTCGGCAAAGACTGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | CTCTTTCCCACAAAGGCTAAACACAGGCACACAATGTGCTTACACATGCTCACAGGGAGGACGCCGAAGTaGAGAATGGAAGACAGGATA | + |
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Preference number: 4 (lower is better) Translates to: LFPTKAKHRHTMCLHMLTGRTPK*RMEDRI Trigger: TATCCTGTCTTCCATTCTTCACTTCGGCGTCCTCCC...TGTGAGCATGTGTAAGCACATTGTGTGCCTGTGTTTAGCCTTTGTGGGAAAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR GCA 90 bp | TCTAGGTCTCTCAGGGCTCCAGAAGGAGACCTTTTCCACAAGGGCTTTAATATCAGAGCATGGAATCTCTaGTCTCTGGGAGATGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: SRSLRAPEGDLFHKGFNIRAWNL*SLGDGR Trigger: CCTTCCATCTCCCAGAGAGCAGAGATTCCATGCTCT...GATATTAAAGCCCTTGTGGAAAAGGTCTCCTTCTGGAGCCCTGAGAGACCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAGTCTTTGCCGAAGTTTGAGATGGAAGGGAGCTaGTGTGAAGGGAGGGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LGSLLVLVFVELQSLPKFEMEGS*CEGRVH Trigger: GTGGACCCTCCCTTCACACCAGCTCCCTTCCATCTC...AAACTTCGGCAAAGACTGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | GTCGACCTTACTCTAGGTCTCTCAGGGCTCCAGAAGGAGACCTTTTCCACAAGGAGATATTGTAGGGGTTaGGAAGAGGAAATCCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: VDLTLGLSGLQKETFSTRRYCRG*EEEILA Trigger: AGCAAGGATTTCCTCTTCCCAACCCCTACAATATCT...CCTTGTGGAAAAGGTCTCCTTCTGGAGCCCTGAGAGACCTAGAGTAAGGTCGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | AAACTGCTGAGCCATCTCTCCAGCCCTCATTTCATCCAATCACTGAAAGGACACAGGCAACGATGCCAGTaGAATAGATTCCAGAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: KLLSHLSSPHFIQSLKGHRQRCQ*NRFQRG Trigger: TCCTCTCTGGAATCTATTTCACTGGCATCGTTGCCT...GTGTCCTTTCAGTGATTGGATGAAATGAGGGCTGGAGAGATGGCTCAGCAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | AGCAGTCAATGTTCTAAACTGCTGAGCCATCTCTCCAGCCCTCATTTCATCCAAATTTGGCTGTGGCTTTaGGGATGTGTCATATGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SSQCSKLLSHLSSPHFIQIWLWL*GCVICQ Trigger: CTGGCATATGACACATCCTCAAAGCCACAGCCAAAT...TTGGATGAAATGAGGGCTGGAGAGATGGCTCAGCAGTTTAGAACATTGACTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR GCA 90 bp | TTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCTGTTTACTTCCTGGGGTGTATATTTCCTTTGCCAATTaGTCCAGTACCTTCATCCCA | + |
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Preference number: 4 (lower is better) Translates to: FQVSGFWGTEGCLLPGVYISFAN*SSTFIP Trigger: TGGGATGAAGGTACTGGAGCAATTGGCAAAGGAAAT...ATACACCCCAGGAAGTAAACAGCCTTCAGTCCCCCAGAAACCAGAAACCTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CCTTACTCTTTCCCACAAAGGCTAAACACAGGCACACAATGTGCTTACACATGCTGCCAATGTAGAGCATaGAATCTCTGCTCTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: PYSFPQRLNTGTQCAYTCCQCRA*NLCSLG Trigger: TCCCAGAGAGCAGAGATTCCATGCTCTACATTGGCA...GCATGTGTAAGCACATTGTGTGCCTGTGTTTAGCCTTTGTGGGAAAGAGTAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CACATCCACAAACATAAACAAATGACACAGGACAACCATAGGAAAGATTTAAGGGCATGCCCAGAGGACTaGGACCTGCTTTGTCCGCAT | + |
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Preference number: 4 (lower is better) Translates to: HIHKHKQMTQDNHRKDLRACPED*DLLCPH Trigger: ATGCGGACAAAGCAGGTCCCAGTCCTCTGGGCATGC...CCTTAAATCTTTCCTATGGTTGTCCTGTGTCATTTGTTTATGTTTGTGGATGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | AGCAGTCAATGTTCTAAACTGCTGAGCCATCTCTCCAGCCCTCATTTCATCCAATTGGAGTTCCAGAGCTaGGTAACCAAAGTCATTACG | + |
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Preference number: 4 (lower is better) Translates to: SSQCSKLLSHLSSPHFIQLEFQS*VTKVIT Trigger: CGTAATGACTTTGGTTACCCAGCTCTGGAACTCCAA...TTGGATGAAATGAGGGCTGGAGAGATGGCTCAGCAGTTTAGAACATTGACTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | CTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAGTCTTTGCCGAAGTTTCAGGGAACTCCAGGCTaGAATTGTTTCGTTGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: LGSLLVLVFVELQSLPKFQGTPG*NCFVVS Trigger: ACTTACAACGAAACAATTTCAGCCTGGAGTTCCCTG...AAACTTCGGCAAAGACTGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CACATCCACAAACATAAACAAATGACACAGGACAACCATAGGAAAGATTTAAGGATGTTGGCAGTGCCGTaGTTGCTCAGTGCTCTGATG | + |
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Preference number: 4 (lower is better) Translates to: HIHKHKQMTQDNHRKDLRMLAVP*LLSALM Trigger: CATCAGAGCACTGAGCAACCACGGCACTGCCAACAT...CCTTAAATCTTTCCTATGGTTGTCCTGTGTCATTTGTTTATGTTTGTGGATGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | ACACACACACACCTACCAATGCAAATACAGACAAGTTCCTTACAACCTTACCACGAATGGGTTTCTCCATaGGCTCAGCAAAGGAGTTAT | + |
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Preference number: 4 (lower is better) Translates to: THTHLPMQIQTSSLQPYHEWVSP*AQQRSY Trigger: ATAACTCCTTTGCTGAGCCCATGGAGAAACCCATTC...GTGGTAAGGTTGTAAGGAACTTGTCTGTATTTGCATTGGTAGGTGTGTGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAGTCTTTGCCGAAGTTTTGTAGTTGTCAATCTTaGTTAAAACCTCCAGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: LGSLLVLVFVELQSLPKFCSCQS*LKPPVR Trigger: GCGCACTGGAGGTTTTAACCAAGATTGACAACTACA...AAACTTCGGCAAAGACTGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CACATCCACAAACATAAACAAATGACACAGGACAACCATAGGAAAGATTTAAGGATGGAGACGATGGGCTaGATGGTAGAGTTATCCAGT | + |
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Preference number: 4 (lower is better) Translates to: HIHKHKQMTQDNHRKDLRMETMG*MVELSS Trigger: ACTGGATAACTCTACCATCCAGCCCATCGTCTCCAT...CCTTAAATCTTTCCTATGGTTGTCCTGTGTCATTTGTTTATGTTTGTGGATGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CCA 90 bp | CATAGGAAAGATTTAAGGGGCTCTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAAAATTAAAGTCAAGGTaGTTCTCGGTGATTTCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HRKDLRGSRLPFSIGVCRKLKSR*FSVISG Trigger: TCCAGAAATCACCGAGAACCACCTTGACTTTAATTT...TCTACAAACACCAATACTAAAAGGGAGCCGAGAGCCCCTTAAATCTTTCCTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | CACATCCACAAACATAAACAAATGACACAGGACAACCATAGGAAAGATTTAAGGATCCGAATTGATGAATaGGATATTGTAGGGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: HIHKHKQMTQDNHRKDLRIRIDE*DIVGVG Trigger: CCCAACCCCTACAATATCTCATTCATCAATTCGGAT...CCTTAAATCTTTCCTATGGTTGTCCTGTGTCATTTGTTTATGTTTGTGGATGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR GCA 90 bp | CACATCCACAAACATAAACAAATGACACAGGACAACCATAGGAAAGATTTAAGGAGAAGTACTCAGAGATaGCAATGTAGAGCATGGAAT | + |
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Preference number: 4 (lower is better) Translates to: HIHKHKQMTQDNHRKDLRRSTQR*QCRAWN Trigger: ATTCCATGCTCTACATTGGCATCTCTGAGTACTTCT...CCTTAAATCTTTCCTATGGTTGTCCTGTGTCATTTGTTTATGTTTGTGGATGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR TCA 90 bp | CACATCCACAAACATAAACAAATGACACAGGACAACCATAGGAAAGATTTAAGGCTTGAACATTTTGACTaGAATAGTTGGAAATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: HIHKHKQMTQDNHRKDLRLEHFD*NSWKSP Trigger: GGGAGATTTCCAACTATTTCAGTCAAAATGTTCAAG...CCTTAAATCTTTCCTATGGTTGTCCTGTGTCATTTGTTTATGTTTGTGGATGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS TCA 90 bp | AGAGCATGGAATCTCTGCTCTCTGGGAGATGGAAGGGAGCTGGTGTaGAGGGAGGGTCCACGAGGCTTTCCAGAGGGTAGAACGCACCCT | + |
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Preference number: 5 (lower is better) Translates to: RAWNLCSLGDGRELV*REGPRGFPEGRTHP Trigger: AGGGTGCGTTCTACCCTCTGGAAAGCCTCGTGGACCCTCCCTTCACACCAGCTCCCTTCCATCTCCCAGAGAGCAGAGATTCCATGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CCA 90 bp | GATTCCAGAGAGGAACAGATTGGCAGCTCCCGAGTCTCGGAAAAGTaGAGCCTTGACGCTCCAGTTGGTGCTGATGTTGGCAGTGCCGTG | + |
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Preference number: 5 (lower is better) Translates to: DSREEQIGSSRVSEK*SLDAPVGADVGSAV Trigger: CACGGCACTGCCAACATCAGCACCAACTGGAGCGTCAAGGCTCCACTTTTCCGAGACTCGGGAGCTGCCAATCTGTTCCTCTCTGGAATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | CCAGGATGCACGGTCTTCATCTTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCTTGAACATGGCAGTCTaGGAGTTCCAGAGCTGGGTA | + |
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Preference number: 5 (lower is better) Translates to: PGCTVFIFQVSGFWGTEGLNMAV*EFQSWV Trigger: TACCCAGCTCTGGAACTCCAAGACTGCCATGTTCAA...GCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGACCGTGCATCCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | TCTTCATCTTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCTGTTTACTTCCTGGCCTTGACGCTCCAGTaGGTGCTGATGTTGGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SSSSRFLVSGGLKAVYFLALTLQ*VLMLAV Trigger: CACTGCCAACATCAGCACCAACTGGAGCGTCAAGGC...CAGGAAGTAAACAGCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | CCAGGATGCACGGTCTTCATCTTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCATTGAACTGTTCCACTaGGCTGATGGCAATGGGACA | + |
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Preference number: 5 (lower is better) Translates to: PGCTVFIFQVSGFWGTEGIELFH*ADGNGT Trigger: TGTCCCATTGCCATCAGCCAAGTGGAACAGTTCAAT...GCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGACCGTGCATCCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | CCAGGATGCACGGTCTTCATCTTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCGATTTGGCTGTGGCTTaGAGGATGTGTCATATGCCA | + |
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Preference number: 5 (lower is better) Translates to: PGCTVFIFQVSGFWGTEGDLAVA*RMCHMP Trigger: TGGCATATGACACATCCTCAAAGCCACAGCCAAATC...GCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGACCGTGCATCCTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CCA 90 bp | TCGGGCATGGCTCACTTGAACATGGCAGTCTTGGAGTTCCAGAGCTaGGTAACCAAAGTCATTACGGGTAAAGGCAACGATGCCAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: SGMAHLNMAVLEFQS*VTKVITGKGNDASE Trigger: TTCACTGGCATCGTTGCCTTTACCCGTAATGACTTTGGTTACCCAGCTCTGGAACTCCAAGACTGCCATGTTCAAGTGAGCCATGCCCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | ACCAGAAGAGGGCCTCAGATCCCATTACAGATGGTTGTGAGCTACCGTGTGGTGAACCTTAGCATCTCGTaGGCTGTTCTCTGGCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: TRRGPQIPLQMVVSYRVVNLSIS*AVLWQR Trigger: TCTTTGCCAGAGAACAGCCAACGAGATGCTAAGGTT...CACCACACGGTAGCTCACAACCATCTGTAATGGGATCTGAGGCCCTCTTCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | ACACACACACACCTACCAATGCAAATACAGACAAGTTCCTTACAACCTTACCACTTGGCAGTGCCGTGGTaGCTCAGTGCTCTGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: THTHLPMQIQTSSLQPYHLAVPW*LSALMP Trigger: AGGCATCAGAGCACTGAGCAACCACGGCACTGCCAA...GTGGTAAGGTTGTAAGGAACTTGTCTGTATTTGCATTGGTAGGTGTGTGTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | TCTTCATCTTCCAGGTTTCTGGTTTCTGGGGGACTGAAGGCTGTTTACTTCCTGGCGCTGATGTTGACATaGAACTGTTCCACTTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SSSSRFLVSGGLKAVYFLALMLT*NCSTWL Trigger: CAGCCAAGTGGAACAGTTCAATGTCAACATCAGCGC...CAGGAAGTAAACAGCCTTCAGTCCCCCAGAAACCAGAAACCTGGAAGATGAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | TCTAGGTCTCTCAGGGCTCCAGAAGGAGACCTTTTCCACAAGGGCTTTAATATCGGGAAGAGGAAATCCTaGCTGCAGTTTTGTGTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SRSLRAPEGDLFHKGFNIGKRKS*LQFCVG Trigger: GCCAACACAAAACTGCAGCAAGGATTTCCTCTTCCC...GATATTAAAGCCCTTGTGGAAAAGGTCTCCTTCTGGAGCCCTGAGAGACCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | CCTTACTCTTTCCCACAAAGGCTAAACACAGGCACACAATGTGCTTACACATGCCCCAGCTGTTCAGATTaGGCTGTGGCTTTGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: PYSFPQRLNTGTQCAYTCPSCSD*AVALRM Trigger: CATCCTCAAAGCCACAGCCAAATCTGAACAGCTGGG...GCATGTGTAAGCACATTGTGTGCCTGTGTTTAGCCTTTGTGGGAAAGAGTAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | AAAGATTTAAGGGGCTCTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCACGGAAAAGTGGAGCCTaGACGCTCCAGTTGGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: KDLRGSRLPFSIGVCRTSRKSGA*TLQLVL Trigger: CAGCACCAACTGGAGCGTCAAGGCTCCACTTTTCCG...TGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAGAGCCCCTTAAATCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | TCTAGGTCTCTCAGGGCTCCAGAAGGAGACCTTTTCCACAAGGGCTTTAATATCTCCAGTGCGCTGATGTaGACATTGAACTGTTCCACT | + |
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Preference number: 5 (lower is better) Translates to: SRSLRAPEGDLFHKGFNISSALM*TLNCST Trigger: AGTGGAACAGTTCAATGTCAACATCAGCGCACTGGA...GATATTAAAGCCCTTGTGGAAAAGGTCTCCTTCTGGAGCCCTGAGAGACCTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS TCA 90 bp | AATCCTTGCTGCAGTTTTGTGTTGGCCAGTGGGAGGACGCCGAAGTaGAGAATGGAAGACAGGATATTCTCAAATCTCACAACCTTAGCA | + |
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Preference number: 5 (lower is better) Translates to: NPCCSFVLASGRTPK*RMEDRIFSNLTTLA Trigger: TGCTAAGGTTGTGAGATTTGAGAATATCCTGTCTTCCATTCTTCACTTCGGCGTCCTCCCACTGGCCAACACAAAACTGCAGCAAGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS GCA 90 bp | GGCCATCATCTGCAGTATGAACGGCTGGGACAAGACATAGATCTCTaGAATCTTGGAGAGTACGCTGCCAAATCCTTGAACATTTTGACT | + |
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Preference number: 5 (lower is better) Translates to: GHHLQYERLGQDIDL*NLGEYAAKSLNILT Trigger: AGTCAAAATGTTCAAGGATTTGGCAGCGTACTCTCCAAGATTGCAGAGATCTATGTCTTGTCCCAGCCGTTCATACTGCAGATGATGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | CTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAGTCTTTGCCGAAGTTTATCCTTGCTGCAGTTTaGTGTTGGCCAGTGGGAGGA | + |
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Preference number: 5 (lower is better) Translates to: LGSLLVLVFVELQSLPKFILAAV*CWPVGG Trigger: TCCTCCCACTGGCCAACACAAAACTGCAGCAAGGAT...AAACTTCGGCAAAGACTGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS TCA 90 bp | AGTGGACAGCGTGGTACCAAGAGCCCCAGATACATAGTGAGCAAATaGCGCAGATTTAAAGAAGTACTCAGAGATGCCAATGTAGAGCAT | + |
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Preference number: 5 (lower is better) Translates to: SGQRGTKSPRYIVSK*RRFKEVLRDANVEH Trigger: ATGCTCTACATTGGCATCTCTGAGTACTTCTTTAAATCTGCGTCATTTGCTCACTATGTATCTGGGGCTCTTGGTACCACGCTGTCCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CCA 90 bp | GAACGCACCCTTCAAATTAAAGTCAAGGTGGTTCTCGGTGATTTCTaGAGGACTGATCAGGGAACAATCCAGCACTGTGTAGTTGTCAAT | + |
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Preference number: 5 (lower is better) Translates to: ERTLQIKVKVVLGDF*RTDQGTIQHCVVVN Trigger: ATTGACAACTACACAGTGCTGGATTGTTCCCTGATCAGTCCTCCAGAAATCACCGAGAACCACCTTGACTTTAATTTGAAGGGTGCGTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | AAAGATTTAAGGGGCTCTCGGCTCCCTTTTAGTATTGGTGTTTGTAGAACTTCAGGAGCAGATCAGTTTTaGTCCCAAAATAGCCAGGCC | + |
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Preference number: 5 (lower is better) Translates to: KDLRGSRLPFSIGVCRTSGADQF*SQNSQA Trigger: GGCCTGGCTATTTTGGGACAAAAACTGATCTGCTCC...TGAAGTTCTACAAACACCAATACTAAAAGGGAGCCGAGAGCCCCTTAAATCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS GCA 90 bp | TTTAAGAGACTCAGAACCGTTCAAATCTGGGATGACGATTTCCTTTaGCAATTGCTCCAGTACCTTCATCCCAACTTGAAGACCATAGTC | + |
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Preference number: 5 (lower is better) Translates to: FKRLRTVQIWDDDFL*QLLQYLHPNLKTIV Trigger: GACTATGGTCTTCAAGTTGGGATGAAGGTACTGGAGCAATTGGCAAAGGAAATCGTCATCCCAGATTTGAACGGTTCTGAGTCTCTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061699.12 ENSMUST00000105304.2 |
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| CDS-3UTR CAA 90 bp | AAACTGCTGAGCCATCTCTCCAGCCCTCATTTCATCCAATCACTGAAAGGACACTACGCTGCCAAATCCTaGAACATTTTGACTGAAATA | + |
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Preference number: 5 (lower is better) Translates to: KLLSHLSSPHFIQSLKGHYAAKS*NILTEI Trigger: TATTTCAGTCAAAATGTTCAAGGATTTGGCAGCGTA...GTGTCCTTTCAGTGATTGGATGAAATGAGGGCTGGAGAGATGGCTCAGCAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS-3UTR CAA 90 bp | ACACACACACACCTACCAATGCAAATACAGACAAGTTCCTTACAACCTTACCACGGGAATGAGAAGGCATaGATTTTTATGTTTGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: THTHLPMQIQTSSLQPYHGNEKA*IFMFEK Trigger: CTTCTCAAACATAAAAATCAATGCCTTCTCATTCCC...GTGGTAAGGTTGTAAGGAACTTGTCTGTATTTGCATTGGTAGGTGTGTGTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 90 bp | GGAGCCTTGACGCTCCAGTTGGTGCTGATGTTGGCAGTGCCGTGGTaGCTCAGTGCTCTGATGCCTACCCCAGGTACGAAGGCCAGTGAG | + |
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Preference number: 6 (lower is better) Translates to: GALTLQLVLMLAVPW*LSALMPTPGTKASE Trigger: CTCACTGGCCTTCGTACCTGGGGTAGGCATCAGAGCACTGAGCAACCACGGCACTGCCAACATCAGCACCAACTGGAGCGTCAAGGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 90 bp | GAGTCTCGGAAAAGTGGAGCCTTGACGCTCCAGTTGGTGCTGATGTaGGCAGTGCCGTGGTTGCTCAGTGCTCTGATGCCTACCCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ESRKSGALTLQLVLM*AVPWLLSALMPTPG Trigger: ACCTGGGGTAGGCATCAGAGCACTGAGCAACCACGGCACTGCCAACATCAGCACCAACTGGAGCGTCAAGGCTCCACTTTTCCGAGACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | ACGCTCCAGTTGGTGCTGATGTTGGCAGTGCCGTGGTaGCTCAGTGCTCTGATGCCTACCCCAGGTACGAAG | + |
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Preference number: 6 (lower is better) Translates to: TLQLVLMLAVPW*LSALMPTPGTK Trigger: CTTCGTACCTGGGGTAGGCATCAGAGCACTGAGCAACCACGGCACTGCCAACATCAGCACCAACTGGAGCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | CCCGAGTCTCGGAAAAGTGGAGCCTTGACGCTCCAGTaGGTGCTGATGTTGGCAGTGCCGTGGTTGCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: PESRKSGALTLQ*VLMLAVPWLLS Trigger: ACTGAGCAACCACGGCACTGCCAACATCAGCACCAACTGGAGCGTCAAGGCTCCACTTTTCCGAGACTCGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | AGATTGGCAGCTCCCGAGTCTCGGAAAAGTGGAGCCTaGACGCTCCAGTTGGTGCTGATGTTGGCAGTGCCG | + |
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Preference number: 6 (lower is better) Translates to: RLAAPESRKSGA*TLQLVLMLAVP Trigger: CGGCACTGCCAACATCAGCACCAACTGGAGCGTCAAGGCTCCACTTTTCCGAGACTCGGGAGCTGCCAATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CCA 72 bp | GAGGAACAGATTGGCAGCTCCCGAGTCTCGGAAAAGTaGAGCCTTGACGCTCCAGTTGGTGCTGATGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: EEQIGSSRVSEK*SLDAPVGADVG Trigger: GCCAACATCAGCACCAACTGGAGCGTCAAGGCTCCACTTTTCCGAGACTCGGGAGCTGCCAATCTGTTCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | AAAAGTGGAGCCTTGACGCTCCAGTTGGTGCTGATGTaGGCAGTGCCGTGGTTGCTCAGTGCTCTGATGCCT | + |
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Preference number: 6 (lower is better) Translates to: KSGALTLQLVLM*AVPWLLSALMP Trigger: AGGCATCAGAGCACTGAGCAACCACGGCACTGCCAACATCAGCACCAACTGGAGCGTCAAGGCTCCACTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | CATGGAGACGATGGGCTGGATGGTAGAGTTATCCAGTaGAGTGAGCATGATGACAGCAGCAGGGAACTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HGDDGLDGRVIQ*SEHDDSSRELQ Trigger: CTGGAGTTCCCTGCTGCTGTCATCATGCTCACTCAACTGGATAACTCTACCATCCAGCCCATCGTCTCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | AGCATGATGACAGCAGCAGGGAACTCCAGGCTGAAATaGTTTCGTTGTAAGTTGACCATAGGAGGCCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SMMTAAGNSRLK*FRCKLTIGGPV Trigger: CACAGGGCCTCCTATGGTCAACTTACAACGAAACAATTTCAGCCTGGAGTTCCCTGCTGCTGTCATCATGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS TCA 72 bp | AAAGGAGTTATACAGGGCACTGAGACTTCCGAAAAATaGGACTCGGGCATGGCTCACTTGAACATGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: KGVIQGTETSEK*DSGMAHLNMAV Trigger: GACTGCCATGTTCAAGTGAGCCATGCCCGAGTCTCATTTTTCGGAAGTCTCAGTGCCCTGTATAACTCCTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS GCA 72 bp | CTGCAGTATGAACGGCTGGGACAAGACATAGATCTCTaGAATCTTGGAGAGTACGCTGCCAAATCCTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: LQYERLGQDIDL*NLGEYAAKSLN Trigger: GTTCAAGGATTTGGCAGCGTACTCTCCAAGATTGCAGAGATCTATGTCTTGTCCCAGCCGTTCATACTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CCA 72 bp | GCTCACTTGAACATGGCAGTCTTGGAGTTCCAGAGCTaGGTAACCAAAGTCATTACGGGTAAAGGCAACGAT | + |
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Preference number: 6 (lower is better) Translates to: AHLNMAVLEFQS*VTKVITGKGND Trigger: ATCGTTGCCTTTACCCGTAATGACTTTGGTTACCCAGCTCTGGAACTCCAAGACTGCCATGTTCAAGTGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 90 bp | GATCTCTGCAATCTTGGAGAGTACGCTGCCAAATCCTTGAACATTTaGACTGAAATAGTTGGAAATCTCCCTAGTGGACAGCGTGGTACC | + |
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Preference number: 6 (lower is better) Translates to: DLCNLGEYAAKSLNI*TEIVGNLPSGQRGT Trigger: GGTACCACGCTGTCCACTAGGGAGATTTCCAACTATTTCAGTCAAAATGTTCAAGGATTTGGCAGCGTACTCTCCAAGATTGCAGAGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS GCA 72 bp | CTCAGAACCGTTCAAATCTGGGATGACGATTTCCTTTaGCAATTGCTCCAGTACCTTCATCCCAACTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: LRTVQIWDDDFL*QLLQYLHPNLK Trigger: CTTCAAGTTGGGATGAAGGTACTGGAGCAATTGGCAAAGGAAATCGTCATCCCAGATTTGAACGGTTCTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061699.12 ENSMUST00000105304.2 |
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| CDS CCA 72 bp | AGGATATTCTCAAATCTCACAACCTTAGCATCTCGTTaGCTGTTCTCTGGCAAAGACAGGCGGAATCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: RIFSNLTTLASR*LFSGKDRRNLF Trigger: GAACAGATTCCGCCTGTCTTTGCCAGAGAACAGCCAACGAGATGCTAAGGTTGTGAGATTTGAGAATATCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | ATCTTGGTTAAAACCTCCAGTGCGCTGATGTTGACATaGAACTGTTCCACTTGGCTGATGGCAATGGGACAA | + |
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Preference number: 6 (lower is better) Translates to: ILVKTSSALMLT*NCSTWLMAMGQ Trigger: TTGTCCCATTGCCATCAGCCAAGTGGAACAGTTCAATGTCAACATCAGCGCACTGGAGGTTTTAACCAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | CAGGATATTCTCAAATCTCACAACCTTAGCATCTCGTaGGCTGTTCTCTGGCAAAGACAGGCGGAATCTGTT | + |
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Preference number: 6 (lower is better) Translates to: QDILKSHNLSIS*AVLWQRQAESV Trigger: AACAGATTCCGCCTGTCTTTGCCAGAGAACAGCCAACGAGATGCTAAGGTTGTGAGATTTGAGAATATCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CCA 72 bp | CTTCAAATTAAAGTCAAGGTGGTTCTCGGTGATTTCTaGAGGACTGATCAGGGAACAATCCAGCACTGTGTA | + |
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Preference number: 6 (lower is better) Translates to: LQIKVKVVLGDF*RTDQGTIQHCV Trigger: TACACAGTGCTGGATTGTTCCCTGATCAGTCCTCCAGAAATCACCGAGAACCACCTTGACTTTAATTTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | ACCGTTCAAATCTGGGATGACGATTTCCTTTGCCAATaGCTCCAGTACCTTCATCCCAACTTGAAGACCATA | + |
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Preference number: 6 (lower is better) Translates to: TVQIWDDDFLCQ*LQYLHPNLKTI Trigger: TATGGTCTTCAAGTTGGGATGAAGGTACTGGAGCAATTGGCAAAGGAAATCGTCATCCCAGATTTGAACGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061699.12 ENSMUST00000105304.2 |
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| CDS CAA 72 bp | TTGTCAATCTTGGTTAAAACCTCCAGTGCGCTGATGTaGACATTGAACTGTTCCACTTGGCTGATGGCAATG | + |
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Preference number: 6 (lower is better) Translates to: LSILVKTSSALM*TLNCSTWLMAM Trigger: CATTGCCATCAGCCAAGTGGAACAGTTCAATGTCAACATCAGCGCACTGGAGGTTTTAACCAAGATTGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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| CDS CAA 72 bp | AATCTTGGAGAGTACGCTGCCAAATCCTTGAACATTTaGACTGAAATAGTTGGAAATCTCCCTAGTGGACAG | + |
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Preference number: 6 (lower is better) Translates to: NLGEYAAKSLNI*TEIVGNLPSGQ Trigger: CTGTCCACTAGGGAGATTTCCAACTATTTCAGTCAAAATGTTCAAGGATTTGGCAGCGTACTCTCCAAGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061699.12 |
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