RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BPIFB9B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067996

Ensembl transcript IDs: ENSMUST00000088921.6

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TGTTCTTGTCCTTGTCACTCAGGGCAGAGGATCCTGGGCATACTGAGGAGACCAGGGCTGAAAGGGGCATaGAGACAATTCTCAGGGGTT +
Preference number: 2 (lower is better)
Translates to: CSCPCHSGQRILGILRRPGLKGA*RQFSGV
Trigger: AACCCCTGAGAATTGTCTCCATGCCCCTTTCAGCCC...TGGTCTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAAGGACAAGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
3UTR TCA 72 bp GTCCTTGTCACTCAGGGCAGAGGATCCTGGGCATACTaGGGAGACCATTGCTATTGTCTCCTGAATCATAAG +
Preference number: 3 (lower is better)
Translates to: VLVTQGRGSWAY*GDHCYCLLNHK
Trigger: CTTATGATTCAGGAGACAATAGCAATGGTCTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
3UTR CCA 72 bp TGTCTCCTGAATCATAAGGATGGGCTGAAAGGGGCATaGAGACAATTCTCAGGGGTTTGCTGTCATTCAGTA +
Preference number: 3 (lower is better)
Translates to: CLLNHKDGLKGA*RQFSGVCCHSV
Trigger: TACTGAATGACAGCAAACCCCTGAGAATTGTCTCCATGCCCCTTTCAGCCCATCCTTATGATTCAGGAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR GCA 90 bp TTGTCACTCAGGGCAGAGGATCCTGGGCATACTGAGGAGACCATTGCTATTGTCGTATCTGGCTGCAGGTaGACACTTGGCACCTTTGGG +
Preference number: 4 (lower is better)
Translates to: LSLRAEDPGHTEETIAIVVSGCR*TLGTFG
Trigger: CCCAAAGGTGCCAAGTGTGCACCTGCAGCCAGATAC...GACAATAGCAATGGTCTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR TCA 90 bp GGATGGGCTGAAAGGGGCATGGAGACAATTCTCAGGGGTTTGCTGTCATTCAGTGCGGCACTTTTCCTGTaGCTGTCTCCACTAACTGAA +
Preference number: 4 (lower is better)
Translates to: GWAERGMETILRGLLSFSAALFL*LSPLTE
Trigger: TTCAGTTAGTGGAGACAGTCACAGGAAAAGTGCCGC...ACTGAATGACAGCAAACCCCTGAGAATTGTCTCCATGCCCCTTTCAGCCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CCA 90 bp CATTGCTATTGTCTCCTGAATCATAAGGATGGGCTGAAAGGGGCATGGAGACAACTGCAGGTGCACACTTaGCACCTTTGGGTGGAGGTA +
Preference number: 4 (lower is better)
Translates to: HCYCLLNHKDGLKGAWRQLQVHT*HLWVEV
Trigger: TACCTCCACCCAAAGGTGCCAAGTGTGCACCTGCAG...TTGTCTCCATGCCCCTTTCAGCCCATCCTTATGATTCAGGAGACAATAGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR GCA 90 bp CTGAAAGGGGCATGGAGACAATTCTCAGGGGTTTGCTGTCATTCAGTACTTGGGTCCCCAGTGGCAAAGTaGTCTCCATTCTTTGTTATG +
Preference number: 4 (lower is better)
Translates to: LKGAWRQFSGVCCHSVLGSPVAK*SPFFVM
Trigger: CATAACAAAGAATGGAGAGCACTTTGCCACTGGGGA...CCCAAGTACTGAATGACAGCAAACCCCTGAGAATTGTCTCCATGCCCCTTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR TCA 90 bp TCCTTGTCACTCAGGGCAGAGGATCCTGGGCATACTGAGGAGACCATTGCTATTTCATTCACTTTCTCCTaGATCGCATCTTTTATACCG +
Preference number: 4 (lower is better)
Translates to: SLSLRAEDPGHTEETIAISFTFS*IASFIP
Trigger: CGGTATAAAAGATGCGATTCAGGAGAAAGTGAATGA...AATAGCAATGGTCTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CCA 90 bp GGAGCTGATTACAACAATGCCCATTTCCTCCAACTGTTCTTGTCCTTGTCACTCCGATGGCACAGGAGTTaGATTTTTCCAGATTTTCAT +
Preference number: 4 (lower is better)
Translates to: GADYNNAHFLQLFLSLSLRWHRS*IFPDFH
Trigger: ATGAAAATCTGGAAAAATCCAACTCCTGTGCCATCG...GAGTGACAAGGACAAGAACAGTTGGAGGAAATGGGCATTGTTGTAATCAGCTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CAA 90 bp TTGTCACTCAGGGCAGAGGATCCTGGGCATACTGAGGAGACCATTGCTATTGTCACGGCAACAGGAAGATaGCCCACCACTGGGGGTGTT +
Preference number: 5 (lower is better)
Translates to: LSLRAEDPGHTEETIAIVTATGR*PTTGGV
Trigger: AACACCCCCAGTGGTGGGCAATCTTCCTGTTGCCGT...GACAATAGCAATGGTCTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CAA 90 bp TCCTTGTCACTCAGGGCAGAGGATCCTGGGCATACTGAGGAGACCATTGCTATTTCGTTAAGTGGCTCCTaGATGCCATCTGGGACCACT +
Preference number: 5 (lower is better)
Translates to: SLSLRAEDPGHTEETIAISLSGS*MPSGTT
Trigger: AGTGGTCCCAGATGGCATCAAGGAGCCACTTAACGA...AATAGCAATGGTCTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CAA 90 bp GGGCATGGAGACAATTCTCAGGGGTTTGCTGTCATTCAGTACTTGGGGTTCAGTTACGTTCCATTGAAGTaGGACCAGGCCGCCTTTCCT +
Preference number: 5 (lower is better)
Translates to: GHGDNSQGFAVIQYLGFSYVPLK*DQAAFP
Trigger: AGGAAAGGCGGCCTGGTCCAACTTCAATGGAACGTA...ACTGAACCCCAAGTACTGAATGACAGCAAACCCCTGAGAATTGTCTCCATGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CAA 90 bp CTGATTACAACAATGCCCATTTCCTCCAACTGTTCTTGTCCTTGTCACTCAGGGTGGTTGACTGGTCCTTaGAGGACTGGGGGACTTAGG +
Preference number: 5 (lower is better)
Translates to: LITTMPISSNCSCPCHSGWLTGP*RTGGLR
Trigger: CCTAAGTCCCCCAGTCCTCAAAGGACCAGTCAACCA...CCCTGAGTGACAAGGACAAGAACAGTTGGAGGAAATGGGCATTGTTGTAATCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CAA 90 bp CAACTGTTCTTGTCCTTGTCACTCAGGGCAGAGGATCCTGGGCATACTGAGGAGACGATGGCACAGGAGTaGGATTTTTCCAGATTTTCA +
Preference number: 5 (lower is better)
Translates to: QLFLSLSLRAEDPGHTEETMAQE*DFSRFS
Trigger: TGAAAATCTGGAAAAATCCAACTCCTGTGCCATCGT...CTCCTCAGTATGCCCAGGATCCTCTGCCCTGAGTGACAAGGACAAGAACAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CCA 90 bp TTCGAGCAGAGTGTCTTTGATATCCATCTTGAGCACATCGTTAAGTaGCTCCTTGATGCCATCTGGGACCACTTCATTCACTTTCTCCTG +
Preference number: 5 (lower is better)
Translates to: FEQSVFDIHLEHIVK*LLDAIWDHFIHFLL
Trigger: CAGGAGAAAGTGAATGAAGTGGTCCCAGATGGCATCAAGGAGCCACTTAACGATGTGCTCAAGATGGATATCAAAGACACTCTGCTCGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS-3UTR CAA 90 bp GGAGACAATTCTCAGGGGTTTGCTGTCATTCAGTACTTGGGGTTCAGTAGTGGCTTGTTCTTGCAGTTGTaGAAGTCATTGAGGACGATG +
Preference number: 5 (lower is better)
Translates to: GDNSQGFAVIQYLGFSSGLFLQL*KSLRTM
Trigger: CATCGTCCTCAATGACTTCAACAACTGCAAGAACAA...GCCACTACTGAACCCCAAGTACTGAATGACAGCAAACCCCTGAGAATTGTCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS TCA 90 bp AGTGGCTCCTTGATGCCATCTGGGACCACTTCATTCACTTTCTCCTaGATCGCATCTTTTATACCGCTCACATTTTCAACTGCATCCTCA +
Preference number: 5 (lower is better)
Translates to: SGSLMPSGTTSFTFS*IASFIPLTFSTASS
Trigger: TGAGGATGCAGTTGAAAATGTGAGCGGTATAAAAGATGCGATTCAGGAGAAAGTGAATGAAGTGGTCCCAGATGGCATCAAGGAGCCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CCA 90 bp AGCTTGACATCTGGTATCAGTGTGGAGTTTGAAATCTTGCTGCCATaGGAGATGAATAATTTCGTTTCCCCAGTGGCAAAGTGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: SLTSGISVEFEILLP*EMNNFVSPVAKCSP
Trigger: TGGAGAGCACTTTGCCACTGGGGAAACGAAATTATTCATCTCCCATGGCAGCAAGATTTCAAACTCCACACTGATACCAGATGTCAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CCA 72 bp TGGAGCAGGCACGGCAACAGGAAGATTGCCCACCACTaGGGGTGTTTCCACCAGGTCAAGTGTTCCCGCTTG +
Preference number: 6 (lower is better)
Translates to: WSRHGNRKIAHH*GCFHQVKCSRL
Trigger: CAAGCGGGAACACTTGACCTGGTGGAAACACCCCCAGTGGTGGGCAATCTTCCTGTTGCCGTGCCTGCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 90 bp CCTCCTACAGGGAGATTGAGTGGAGCAGGCACGGCAACAGGAAGATaGCCCACCACTGGGGGTGTTTCCACCAGGTCAAGTGTTCCCGCT +
Preference number: 6 (lower is better)
Translates to: PPTGRLSGAGTATGR*PTTGGVSTRSSVPA
Trigger: AGCGGGAACACTTGACCTGGTGGAAACACCCCCAGTGGTGGGCAATCTTCCTGTTGCCGTGCCTGCTCCACTCAATCTCCCTGTAGGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 72 bp GGGAGATTGAGTGGAGCAGGCACGGCAACAGGAAGATaGCCCACCACTGGGGGTGTTTCCACCAGGTCAAGT +
Preference number: 6 (lower is better)
Translates to: GRLSGAGTATGR*PTTGGVSTRSS
Trigger: ACTTGACCTGGTGGAAACACCCCCAGTGGTGGGCAATCTTCCTGTTGCCGTGCCTGCTCCACTCAATCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 72 bp TTGAGGACTGGGGGACTTAGGCCTCCTACAGGGAGATaGAGTGGAGCAGGCACGGCAACAGGAAGATTGCCC +
Preference number: 6 (lower is better)
Translates to: LRTGGLRPPTGR*SGAGTATGRLP
Trigger: GGGCAATCTTCCTGTTGCCGTGCCTGCTCCACTCAATCTCCCTGTAGGAGGCCTAAGTCCCCCAGTCCTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 72 bp AGGAAGTATCTGGCTGCAGGTGCACACTTGGCACCTTaGGGTGGAGGTACAGGCCTTTTAGGAGGTAACATT +
Preference number: 6 (lower is better)
Translates to: RKYLAAGAHLAP*GGGTGLLGGNI
Trigger: AATGTTACCTCCTAAAAGGCCTGTACCTCCACCCAAAGGTGCCAAGTGTGCACCTGCAGCCAGATACTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS TCA 72 bp TTGGGTGGAGGTACAGGCCTTTTAGGAGGTAACATTTaGTGGTTGACTGGTCCTTTGAGGACTGGGGGACTT +
Preference number: 6 (lower is better)
Translates to: LGGGTGLLGGNI*WLTGPLRTGGL
Trigger: AAGTCCCCCAGTCCTCAAAGGACCAGTCAACCATCAAATGTTACCTCCTAAAAGGCCTGTACCTCCACCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 90 bp TCCTTAGCCTCAGGAGGCACCACACTGTGTTCAGACCTTATGAGCTaGACATCTGGTATCAGTGTGGAGTTTGAAATCTTGCTGCCATGG +
Preference number: 6 (lower is better)
Translates to: SLASGGTTLCSDLMS*TSGISVEFEILLPW
Trigger: CCATGGCAGCAAGATTTCAAACTCCACACTGATACCAGATGTCAAGCTCATAAGGTCTGAACACAGTGTGGTGCCTCCTGAGGCTAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS TCA 72 bp TCATTTATTTTTGCTGTCACTATTGCTGGGATGATCTaGTCCAAGGGCAGAGGCACAGGCAGCGGCACTTTT +
Preference number: 6 (lower is better)
Translates to: SFIFAVTIAGMI*SKGRGTGSGTF
Trigger: AAAAGTGCCGCTGCCTGTGCCTCTGCCCTTGGATCAGATCATCCCAGCAATAGTGACAGCAAAAATAAATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CCA 72 bp AGTGTCTTTGATATCCATCTTGAGCACATCGTTAAGTaGCTCCTTGATGCCATCTGGGACCACTTCATTCAC +
Preference number: 6 (lower is better)
Translates to: SVFDIHLEHIVK*LLDAIWDHFIH
Trigger: GTGAATGAAGTGGTCCCAGATGGCATCAAGGAGCCACTTAACGATGTGCTCAAGATGGATATCAAAGACACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 72 bp TTGATATCCATCTTGAGCACATCGTTAAGTGGCTCCTaGATGCCATCTGGGACCACTTCATTCACTTTCTCC +
Preference number: 6 (lower is better)
Translates to: LISILSTSLSGS*MPSGTTSFTFS
Trigger: GGAGAAAGTGAATGAAGTGGTCCCAGATGGCATCAAGGAGCCACTTAACGATGTGCTCAAGATGGATATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 72 bp ACCTTCAGTTCGAGCAGAGTGTCTTTGATATCCATCTaGAGCACATCGTTAAGTGGCTCCTTGATGCCATCT +
Preference number: 6 (lower is better)
Translates to: TFSSSRVSLISI*STSLSGSLMPS
Trigger: AGATGGCATCAAGGAGCCACTTAACGATGTGCTCAAGATGGATATCAAAGACACTCTGCTCGAACTGAAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 90 bp TCTCCATTCTTTGTTATGTCAACCTTATACACGACTCTGAGCGTATaGTTTTCCTGGGAGGCAAACGCTATGTGGGTGATTTGTGCTTCC +
Preference number: 6 (lower is better)
Translates to: SPFFVMSTLYTTLSV*FSWEANAMWVICAS
Trigger: GGAAGCACAAATCACCCACATAGCGTTTGCCTCCCAGGAAAACAATACGCTCAGAGTCGTGTATAAGGTTGACATAACAAAGAATGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS TCA 72 bp CTCCATTCTTTGTTATGTCAACCTTATACACGACTCTaGGCGTATTGTTTTCCTGGGAGGCAAACGCTATGT +
Preference number: 6 (lower is better)
Translates to: LHSLLCQPYTRL*AYCFPGRQTLC
Trigger: ACATAGCGTTTGCCTCCCAGGAAAACAATACGCTCAGAGTCGTGTATAAGGTTGACATAACAAAGAATGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS CAA 72 bp AATAAGCCGGTATTGTTCTTGCAGTTGTTGAAGTCATaGAGGACGATGGCACAGGAGTTGGATTTTTCCAGA +
Preference number: 6 (lower is better)
Translates to: NKPVLFLQLLKS*RTMAQELDFSR
Trigger: TCTGGAAAAATCCAACTCCTGTGCCATCGTCCTCAATGACTTCAACAACTGCAAGAACAATACCGGCTTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS TCA 72 bp TTGATGCCATCTGGGACCACTTCATTCACTTTCTCCTaGATCGCATCTTTTATACCGCTCACATTTTCAACT +
Preference number: 6 (lower is better)
Translates to: LMPSGTTSFTFS*IASFIPLTFST
Trigger: AGTTGAAAATGTGAGCGGTATAAAAGATGCGATTCAGGAGAAAGTGAATGAAGTGGTCCCAGATGGCATCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6
CDS GCA 72 bp TGGGAGATGAATAATTTCGTTTCCCCAGTGGCAAAGTaGTCTCCATTCTTTGTTATGTCAACCTTATACACG +
Preference number: 6 (lower is better)
Translates to: WEMNNFVSPVAK*SPFFVMSTLYT
Trigger: CGTGTATAAGGTTGACATAACAAAGAATGGAGAGCACTTTGCCACTGGGGAAACGAAATTATTCATCTCCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088921.6