RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BPIFB4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074665

Ensembl transcript IDs: ENSMUST00000099181.2, ENSMUST00000109757.8, ENSMUST00000109759.9, ENSMUST00000154281.3

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCGTCCCCAGGCTGTCCTaGGCATGGCATTGTTGGACA +
Preference number: 2 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGVPRLS*AWHCWT
Trigger: TGTCCAACAATGCCATGCTCAGGACAGCCTGGGGAC...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTAAGGGGTGGGAGGGTTaGGCAGGGACCTGTGATAAA +
Preference number: 2 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPKGWEG*AGTCDK
Trigger: TTTATCACAGGTCCCTGCCCAACCCTCCCACCCCTT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
3UTR-3UTR TCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGACCTGTGATAAAGGCTaGAGAGACTTGGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKTCDKG*RDLGPG
Trigger: CCCTGGTCCCAAGTCTCTTCAGCCTTTATCACAGGT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
3UTR-3UTR TCA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACACCTGTGATAAAGGCTaGAGAGACTTGGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHTCDKG*RDLGPG
Trigger: CCCTGGTCCCAAGTCTCTTCAGCCTTTATCACAGGT...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGTGGGAGGGTTaGGCAGGGACCTGTGATAAA +
Preference number: 2 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRKGWEG*AGTCDK
Trigger: TTTATCACAGGTCCCTGCCCAACCCTCCCACCCCTT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
3UTR-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAAGGGGTGGGAGGGTTaGGCAGGGACCTGTGATAAA +
Preference number: 2 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGKGWEG*AGTCDK
Trigger: TTTATCACAGGTCCCTGCCCAACCCTCCCACCCCTT...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
3UTR-3UTR TCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACCTGTGATAAAGGCTaGAGAGACTTGGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRTCDKG*RDLGPG
Trigger: CCCTGGTCCCAAGTCTCTTCAGCCTTTATCACAGGT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
3UTR-3UTR CCA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGACAGGGGGATCCTTCATaGAGACACCCCAAATGCAGG +
Preference number: 2 (lower is better)
Translates to: LSSGEETEARGMHQSECRQGDPS*RHPKCR
Trigger: CCTGCATTTGGGGTGTCTCCATGAAGGATCCCCCTG...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR TCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGACCTGTGATAAAGGCTaGAGAGACTTGGGACCAGGG +
Preference number: 2 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRTCDKG*RDLGPG
Trigger: CCCTGGTCCCAAGTCTCTTCAGCCTTTATCACAGGT...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR GCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGTGGAGACACCCCAAATaGAGGGAAAGTGAAATGTTT +
Preference number: 2 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRWRHPK*RESEMF
Trigger: AAACATTTCACTTTCCCTGCATTTGGGGTGTCTCCA...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR TCA 90 bp CTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTAGTGAAATGTTTTATTaGAAGCACAAGACCTCAGTC +
Preference number: 2 (lower is better)
Translates to: LPRHKQGEKEMLDPRGILSEMFY*KHKTSV
Trigger: GACTGAGGTCTTGTGCTTTCAATAAAACATTTCACT...AAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR TCA 72 bp TGCACCAAAGTGAGTGCAGAAGGAAGGCACCAAAGCTaGATCCAAGTCACCCCCACCTCCACCCCCACCCCC +
Preference number: 3 (lower is better)
Translates to: CTKVSAEGRHQS*IQVTPTSTPTP
Trigger: GGGGGTGGGGGTGGAGGTGGGGGTGACTTGGATTCAGCTTTGGTGCCTTCCTTCTGCACTCACTTTGGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR CAA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCTGAGCATGGCATTGTaGGACAATGGGGAGTGGCTG +
Preference number: 3 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRLSMAL*DNGEWL
Trigger: CAGCCACTCCCCATTGTCCAACAATGCCATGCTCAG...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR CCA 72 bp TCCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATaGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCA +
Preference number: 3 (lower is better)
Translates to: SPGCPEHGIVGQ*GVAGSFPRLRA
Trigger: TGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
3UTR-3UTR CAA 90 bp CTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCTGAGCATGGCATTGTaGGACAATGGGGAGTGGCTG +
Preference number: 3 (lower is better)
Translates to: LPRHKQGEKEMLDPRGILLSMAL*DNGEWL
Trigger: CAGCCACTCCCCATTGTCCAACAATGCCATGCTCAG...AAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR-3UTR CAA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCGTCCTGAGCATGGCATaGTTGGACAATGGGGAGTGG +
Preference number: 3 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTVLSMA*LDNGEW
Trigger: CCACTCCCCATTGTCCAACAATGCCATGCTCAGGAC...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR GCA 72 bp GAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTaGAGAAGGAAGGCACCAAAGCTGAATCCAAGTCAC +
Preference number: 3 (lower is better)
Translates to: EETEARGMHQSE*RRKAPKLNPSH
Trigger: GTGACTTGGATTCAGCTTTGGTGCCTTCCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
3UTR TCA 72 bp GGATCCTTCATGGAGACACCCCAAATGCAGGGAAAGTaGAATGTTTTATTGAAAGCACAAGACCTCAGTCCC +
Preference number: 3 (lower is better)
Translates to: GSFMETPQMQGK*NVLLKAQDLSP
Trigger: GGGACTGAGGTCTTGTGCTTTCAATAAAACATTTCACTTTCCCTGCATTTGGGGTGTCTCCATGAAGGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGGGCCCAGGGCCCCAGTaGCCACACCAGCTGGGATCT +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRGPGPQ*PHQLGS
Trigger: AGATCCCAGCTGGTGTGGCCACTGGGGCCCTGGGCC...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACCATGCCGTAGGTCCCTaGGGCTCCCATCGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHHAVGP*GSHRSP
Trigger: TGGACTCCGATGGGAGCCTCAGGGACCTACGGCATG...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGGTCCCCCACCATGGCTaGCACCACCCAAAAGGCCAC +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKVPHHG*HHPKGH
Trigger: GTGGCCTTTTGGGTGGTGGCAGCCATGGTGGGGGAC...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTAGCCTGTGCGGTCCATaGTCAGCCGAACTTTGGCCG +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPSLCGP*SAELWP
Trigger: CGGCCAAAGTTCGGCTGACCATGGACCGCACAGGCT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTGCTGAGATGGCCAGCTaGGAGTTGGTGTTGTCGCCC +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPAEMAS*ELVLSP
Trigger: GGGCGACAACACCAACTCCCAGCTGGCCATCTCAGC...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACATGCCGTAGGTCCCTaGGGCTCCCATCGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGHAVGP*GSHRSP
Trigger: TGGACTCCGATGGGAGCCTCAGGGACCTACGGCATG...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTCCCCATAGCGGTACTTaGCCCCCAGCTGAGCTCTAT +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPPHSGT*PPAELY
Trigger: ATAGAGCTCAGCTGGGGGGCAAGTACCGCTATGGGG...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGAGCCTGTGCGGTCCATaGTCAGCCGAACTTTGGCCG +
Preference number: 4 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRSLCGP*SAELWP
Trigger: CGGCCAAAGTTCGGCTGACCATGGACCGCACAGGCT...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCTGGCCAGCTGGGAGTTaGTGTTGTCGCCCATGGGGG +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGWPAGS*CCRPWG
Trigger: CCCCCATGGGCGACAACACCAACTCCCAGCTGGCCA...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGTGGCCAGCTGGGAGTTaGTGTTGTCGCCCATGGGGG +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRWPAGS*CCRPWG
Trigger: CCCCCATGGGCGACAACACCAACTCCCAGCTGGCCA...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGAGTGGCCACACCAGCTaGGATCTCTCCAGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRSGHTS*DLSRPQ
Trigger: CTGAGGCCTGGAGAGATCCCAGCTGGTGTGGCCACT...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACAGTGGCCACACCAGCTaGGATCTCTCCAGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHSGHTS*DLSRPQ
Trigger: CTGAGGCCTGGAGAGATCCCAGCTGGTGTGGCCACT...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGGGCCCAGGGCCCCAGTaGCCACACCAGCTGGGATCT +
Preference number: 4 (lower is better)
Translates to: KAQTRREGNARPQGDPSWGPGPQ*PHQLGS
Trigger: AGATCCCAGCTGGTGTGGCCACTGGGGCCCTGGGCC...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCTTCATTTGCCAGCATaGCCCCTGTGCCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKLHLPA*PLCPAD
Trigger: GTCTGCTGGGCACAGGGGGCATGCTGGCAAATGAAG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACCTTCATTTGCCAGCATaGCCCCTGTGCCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHLHLPA*PLCPAD
Trigger: GTCTGCTGGGCACAGGGGGCATGCTGGCAAATGAAG...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTAGTTGTCCACCAGGTTaGGGAGAAGCCCTCGAAGCA +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPSCPPG*GEALEA
Trigger: TGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAGGTGGCCAGCTGGGAGTTaGTGTTGTCGCCCATGGGGG +
Preference number: 4 (lower is better)
Translates to: SSGEETEARGMHQSECRRWPAGS*CCRPWG
Trigger: CCCCCATGGGCGACAACACCAACTCCCAGCTGGCCA...CCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGGCTGAGATGGCCAGCTaGGAGTTGGTGTTGTCGCCC +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRAEMAS*ELVLSP
Trigger: GGGCGACAACACCAACTCCCAGCTGGCCATCTCAGC...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAGCTGAGATGGCCAGCTaGGAGTTGGTGTTGTCGCCC +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGAEMAS*ELVLSP
Trigger: GGGCGACAACACCAACTCCCAGCTGGCCATCTCAGC...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCCGAGCTCAGGAAATTaGCTGAGATGGCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKPSSGN*LRWPAG
Trigger: CCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTCTTGCTTCTGCAGCATaGTCAGCACCGAGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPLASAA*SAPSSG
Trigger: TCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAG...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCCAAGCAAGCCCCCTTaGCCTGCCAGAATGCCTTCA +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKPSKPP*PARMPS
Trigger: TGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTGCTTGGCGTCGATCATaGGCTTATCTCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPAWRRS*AYLLPQ
Trigger: CTGTGGAAGGAGATAAGCTCATGATCGACGCCAAGC...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAACACACAGCTGCCACTaGCAGAGCAGCCACACACCA +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGTHSCH*QSSHTP
Trigger: TGGTGTGTGGCTGCTCTGTCAGTGGCAGCTGTGTGT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACACACAGCTGCCACTaGCAGAGCAGCCACACACCA +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRTHSCH*QSSHTP
Trigger: TGGTGTGTGGCTGCTCTGTCAGTGGCAGCTGTGTGT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGCATGCCGTAGGTCCCTaGGGCTCCCATCGGAGTCCA +
Preference number: 4 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRHAVGP*GSHRSP
Trigger: TGGACTCCGATGGGAGCCTCAGGGACCTACGGCATG...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCCCCCATAGCGGTACTTaGCCCCCAGCTGAGCTCTAT +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGPHSGT*PPAELY
Trigger: ATAGAGCTCAGCTGGGGGGCAAGTACCGCTATGGGG...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGGTACGGTGCTTAGGATaGCTCCTTCACCCAGCACAC +
Preference number: 4 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRVRCLG*LLHPAH
Trigger: GTGTGCTGGGTGAAGGAGGCATCCTAAGCACCGTAC...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCTCCTCCCCCACCACTaGTCCCTTCACTTCCACCAA +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRLLPHH*SLHFHQ
Trigger: TTGGTGGAAGTGAAGGGAGCAGTGGTGGGGGAGGAG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCTCAATGACCAACCGTaGGTAGCCTGTGCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKLNDQP*VACAVH
Trigger: ATGGACCGCACAGGCTACCCACGGTTGGTCATTGAG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCAGTTGTCCACCAGGTTaGGGAGAAGCCCTCGAAGCA +
Preference number: 4 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGSCPPG*GEALEA
Trigger: TGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACT...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCTGGCCAGCTGGGAGTTaGTGTTGTCGCCCATGGGGG +
Preference number: 4 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPWPAGS*CCRPWG
Trigger: CCCCCATGGGCGACAACACCAACTCCCAGCTGGCCA...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAGCTGAGATGGCCAGCTaGGAGTTGGTGTTGTCGCCC +
Preference number: 4 (lower is better)
Translates to: LSSGEETEARGMHQSECRAEMAS*ELVLSP
Trigger: GGGCGACAACACCAACTCCCAGCTGGCCATCTCAGC...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACCGAGCTCAGGAAATTaGCTGAGATGGCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGPSSGN*LRWPAG
Trigger: CCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGG...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCCGAGCTCAGGAAATTaGCTGAGATGGCCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRPSSGN*LRWPAG
Trigger: CCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCTTGCTTCTGCAGCATaGTCAGCACCGAGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKLASAA*SAPSSG
Trigger: TCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAGGAGCAGTCCCCCACCATaGCTGCCACCACCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: SSGEETEARGMHQSECRRSSPPP*LPPPKR
Trigger: CCTTTTGGGTGGTGGCAGCCATGGTGGGGGACTGCT...CCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTGACCCAGCTGGTCATTaGCAAGACCCAATACCACAT +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPDPAGH*QDPIPH
Trigger: ATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTC...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGGCTTGGCGTCGATCATaGGCTTATCTCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKAWRRS*AYLLPQ
Trigger: CTGTGGAAGGAGATAAGCTCATGATCGACGCCAAGC...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCCACGATGCGCAACCTaGATGCAGTCAAGAGAGATG +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKPRCAT*MQSREM
Trigger: CATCTCTCTTGACTGCATGCAGGTTGCGCATCGTGG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099181.2
CDS-3UTR GCA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGTGCCACCAAGCTGTCTaGCATTGGTGTATTTGGGGG +
Preference number: 4 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRCHQAV*HWCIWG
Trigger: CCCCCAAATACACCAATGGCAGACAGCTTGGTGGCA...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCAAGCCCCCTTGGCCTaGCAGAATGCCTTCATTTGC +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRQAPLA*QNAFIC
Trigger: GCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGGTACGGTGCTTAGGATaGCTCCTTCACCCAGCACAC +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRVRCLG*LLHPAH
Trigger: GTGTGCTGGGTGAAGGAGGCATCCTAAGCACCGTAC...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp AGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAGGCACCACCACTGCTACTaGCACCCAATAGGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: SSGEETEARGMHQSECRRHHHCY*HPIGLH
Trigger: GTGGAGGCCTATTGGGTGGCAGTAGCAGTGGTGGTG...CCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCCAACAGTCCACCACTaGCACCCAACAGACCCCCAC +
Preference number: 4 (lower is better)
Translates to: LPRHKQGEKEMLDPRGILPTVHH*HPTDPH
Trigger: GTGGGGGTCTGTTGGGTGGCAGTGGTGGACTGTTGG...AAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGACCACCACCATGGCTaGCACCACCCAACAGTCCAC +
Preference number: 4 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRDHHHG*HHPTVH
Trigger: GTGGACTGTTGGGTGGTGGCAGCCATGGTGGTGGTC...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACTCAATGACCAACCGTaGGTAGCCTGTGCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGLNDQP*VACAVH
Trigger: ATGGACCGCACAGGCTACCCACGGTTGGTCATTGAG...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCGGTCAGGGAGTACATTaGCCAGCACTCGGTTCACTA +
Preference number: 4 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGGQGVH*PALGSL
Trigger: TAGTGAACCGAGTGCTGGCCAATGTACTCCCTGACC...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCATACCACATCCACAATaGGGCAGAGCAGGTCAGGGA +
Preference number: 4 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGIPHPQ*GRAGQG
Trigger: TCCCTGACCTGCTCTGCCCCATTGTGGATGTGGTAT...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTCCACGAGACCCAGCTaGTCATTGACAAGACCCAAT +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPSTRPS*SLTRPN
Trigger: ATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGA...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCCAGTCACCAGTaGAAGGCTGGAGAAAGTGTA +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPFPSHQ*KAGESV
Trigger: TACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAA...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGGGAAATTGGCTGAGATaGCCAGCTGGGAGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKGNWLR*PAGSWC
Trigger: ACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCC...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCCTTGCTTCTGCAGCATaGTCAGCACCGAGCTCAGGA +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGLASAA*SAPSSG
Trigger: TCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAG...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGTGCCATTGGTGTATTTaGGGGGAGGCTCTCGGACAT +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKCHWCI*GEALGH
Trigger: ATGTCCGAGAGCCTCCCCCCAAATACACCAATGGCA...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGTGCCATTGGTGTATTTaGGGGGAGGCTCTCGGACAT +
Preference number: 4 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRCHWCI*GEALGH
Trigger: ATGTCCGAGAGCCTCCCCCCAAATACACCAATGGCA...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGACCAAGCAAGCCCCCTTaGCCTGCCAGAATGCCTTCA +
Preference number: 4 (lower is better)
Translates to: LSSGEETEARGMHQSECRPSKPP*PARMPS
Trigger: TGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGG...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAACAGTCCTCCACCATaGCTTCCACCACCCAGAAGC +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGNSPPP*LPPPRS
Trigger: GCTTCTGGGTGGTGGAAGCCATGGTGGAGGACTGTT...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTCCTTCCACAGAAAATaGAGCCAAGAGGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPSFHRK*SQEVCV
Trigger: GACACAGACCTCTTGGCTTCATTTTCTGTGGAAGGA...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCAAAGTTGCCCACGTTTaGGGTTCTGAGGTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGKVAHV*GSEVEA
Trigger: AGCCTCAACCTCAGAACCTCAAACGTGGGCAACTTT...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCCTTCTGAATTGTGCCTaGGATGGCATTGCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGLLNCA*DGIAQH
Trigger: GTGCTGGGCAATGCCATCTCAGGCACAATTCAGAAG...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAATTGCACCTTGCTTCTaGAGCATGGTCAGCACCGAG +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGIAPCF*SMVSTE
Trigger: CTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAAT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGCCCCATAGCGGTACTTaGCCCCCAGCTGAGCTCTAT +
Preference number: 4 (lower is better)
Translates to: KAQTRREGNARPQGDPSWPHSGT*PPAELY
Trigger: ATAGAGCTCAGCTGGGGGGCAAGTACCGCTATGGGG...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGCTTCATTTGCCAGCATaGCCCCTGTGCCCAGCAGAC +
Preference number: 4 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRLHLPA*PLCPAD
Trigger: GTCTGCTGGGCACAGGGGGCATGCTGGCAAATGAAG...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGCAAGCCCCCTTGGCCTaGCAGAATGCCTTCATTTGC +
Preference number: 4 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGQAPLA*QNAFIC
Trigger: GCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTG...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGAGTTGTCCACCAGGTTaGGGAGAAGCCCTCGAAGCA +
Preference number: 4 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGSCPPG*GEALEA
Trigger: TGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACT...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCGGTCAGGGAGTACATTaGCCAGCACTCGGTTCACTA +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGGQGVH*PALGSL
Trigger: TAGTGAACCGAGTGCTGGCCAATGTACTCCCTGACC...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAGGTCAGGGAGTACATTaGCCAGCACTCGGTTCACTA +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGGQGVH*PALGSL
Trigger: TAGTGAACCGAGTGCTGGCCAATGTACTCCCTGACC...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGATACCACATCCACAATaGGGCAGAGCAGGTCAGGGA +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRIPHPQ*GRAGQG
Trigger: TCCCTGACCTGCTCTGCCCCATTGTGGATGTGGTAT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAATACCACATCCACAATaGGGCAGAGCAGGTCAGGGA +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGIPHPQ*GRAGQG
Trigger: TCCCTGACCTGCTCTGCCCCATTGTGGATGTGGTAT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACTCCACGAGACCCAGCTaGTCATTGACAAGACCCAAT +
Preference number: 4 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHSTRPS*SLTRPN
Trigger: ATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGA...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGGGAAATTGGCTGAGATaGCCAGCTGGGAGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRGNWLR*PAGSWC
Trigger: ACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCC...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCCCAAGCAAGCCCCCTTaGCCTGCCAGAATGCCTTCA +
Preference number: 4 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPPSKPP*PARMPS
Trigger: TGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGG...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAACAGACCCCCACCATaGCTACCACCACCCAGCAGT +
Preference number: 4 (lower is better)
Translates to: KAQTRREGNARPQGDPSWNRPPP*LPPPSS
Trigger: ACTGCTGGGTGGTGGTAGCCATGGTGGGGGTCTGTT...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAACAGACCCCCACCATaGCTACCACCACCACCCAAC +
Preference number: 4 (lower is better)
Translates to: KAQTRREGNARPQGDPSWNRPPP*LPPPPN
Trigger: GTTGGGTGGTGGTGGTAGCCATGGTGGGGGTCTGTT...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGTCCTTCCACAGAAAATaGAGCCAAGAGGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKSFHRK*SQEVCV
Trigger: GACACAGACCTCTTGGCTTCATTTTCTGTGGAAGGA...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAAAGTTGCCCACGTTTaGGGTTCTGAGGTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGKVAHV*GSEVEA
Trigger: AGCCTCAACCTCAGAACCTCAAACGTGGGCAACTTT...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAAGTTGCCCACGTTTaGGGTTCTGAGGTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRKVAHV*GSEVEA
Trigger: AGCCTCAACCTCAGAACCTCAAACGTGGGCAACTTT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGCTTCTGAATTGTGCCTaGGATGGCATTGCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGLLNCA*DGIAQH
Trigger: GTGCTGGGCAATGCCATCTCAGGCACAATTCAGAAG...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGACTTCTGAATTGTGCCTaGGATGGCATTGCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: LSSGEETEARGMHQSECRLLNCA*DGIAQH
Trigger: GTGCTGGGCAATGCCATCTCAGGCACAATTCAGAAG...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCACTCTTCTGAATTGTaGCTGAGATGGCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKHSSEL*LRWHCP
Trigger: TGGGCAATGCCATCTCAGGCACAATTCAGAAGAGTG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCCACTCTTCTGAATTGTaGCTGAGATGGCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGHSSEL*LRWHCP
Trigger: TGGGCAATGCCATCTCAGGCACAATTCAGAAGAGTG...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGTGCCACCAAGCTGTCTaGCATTGGTGTATTTGGGGG +
Preference number: 4 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGCHQAV*HWCIWG
Trigger: CCCCCAAATACACCAATGGCAGACAGCTTGGTGGCA...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGCAAGCCCCCTTGGCCTaGCAGAATGCCTTCATTTGC +
Preference number: 4 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRQAPLA*QNAFIC
Trigger: GCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTG...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCGTACGGTGCTTAGGATaGCTCCTTCACCCAGCACAC +
Preference number: 4 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTVRCLG*LLHPAH
Trigger: GTGTGCTGGGTGAAGGAGGCATCCTAAGCACCGTAC...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATAGCCTGTGCGGTCCATaGTCAGCCGAACTTTGGCCG +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHSLCGP*SAELWP
Trigger: CGGCCAAAGTTCGGCTGACCATGGACCGCACAGGCT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAGGTCAGGGAGTACATTaGCCAGCACTCGGTTCACTA +
Preference number: 4 (lower is better)
Translates to: LSSGEETEARGMHQSECRGQGVH*PALGSL
Trigger: TAGTGAACCGAGTGCTGGCCAATGTACTCCCTGACC...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGATCCACGAGACCCAGCTaGTCATTGACAAGACCCAAT +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGSTRPS*SLTRPN
Trigger: ATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGA...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCTTCCCCAGTCACCAGTaGAAGGCTGGAGAAAGTGTA +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGFPSHQ*KAGESV
Trigger: TACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAA...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGGATTCCGGGTATTGCTaGAACACCTTGGGAATCAAG +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKDSGYC*NTLGIK
Trigger: CTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATC...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGGATTCCGGGTATTGCTaGAACACCTTGGGAATCAAG +
Preference number: 4 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRDSGYC*NTLGIK
Trigger: CTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATC...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGGAATTGTGCCTGAGATaGCATTGCCCAGCACATCTT +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKELCLR*HCPAHL
Trigger: AAGATGTGCTGGGCAATGCCATCTCAGGCACAATTC...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCGAATTGTGCCTGAGATaGCATTGCCCAGCACATCTT +
Preference number: 4 (lower is better)
Translates to: LLPPPQTLSVSPTSHFQGELCLR*HCPAHL
Trigger: AAGATGTGCTGGGCAATGCCATCTCAGGCACAATTC...GCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATAGTGGCCACACCAGCTaGGATCTCTCCAGGCCTCAG +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHSGHTS*DLSRPQ
Trigger: CTGAGGCCTGGAGAGATCCCAGCTGGTGTGGCCACT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCAACAGACCCCCACCATaGCTACCACCACCCAACAGT +
Preference number: 4 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTNRPPP*LPPPNS
Trigger: ACTGTTGGGTGGTGGTAGCCATGGTGGGGGTCTGTT...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCAAACATGCCATCAGTaGTGTCAATGTCCATTGCAC +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKQTCHQ*CQCPLH
Trigger: GTGCAATGGACATTGACATCACTGATGGCATGTTTG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTGCTTGGCGTCGATCATaGGCTTATCTCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: LPRHKQGEKEMLDPRGILAWRRS*AYLLPQ
Trigger: CTGTGGAAGGAGATAAGCTCATGATCGACGCCAAGC...AAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCGGAAATTGGCTGAGATaGCCAGCTGGGAGTTGGTGT +
Preference number: 4 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPGNWLR*PAGSWC
Trigger: ACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCC...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGGATTCCGGGTATTGCTaGAACACCTTGGGAATCAAG +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRDSGYC*NTLGIK
Trigger: CTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATC...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGGACCCAGCTGGTCATTaGCAAGACCCAATACCACAT +
Preference number: 4 (lower is better)
Translates to: KAQTRREGNARPQGDPSWDPAGH*QDPIPH
Trigger: ATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTC...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCAAACATGCCATCAGTaGTGTCAATGTCCATTGCAC +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRQTCHQ*CQCPLH
Trigger: GTGCAATGGACATTGACATCACTGATGGCATGTTTG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp AGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAGGTCCTTCCACAGAAAATaGAGCCAAGAGGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: SSGEETEARGMHQSECRRSFHRK*SQEVCV
Trigger: GACACAGACCTCTTGGCTTCATTTTCTGTGGAAGGA...CCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCCAACATTTCCAAGATaGACACATCAAAGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKPTFPR*THQSCP
Trigger: TGGGCAACTTTGATGTGTTCATCTTGGAAATGTTGG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCCTGGAGAAAGTGTATTaGACACTCCCAAGTATTCCC +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGLEKVY*TLPSIP
Trigger: GGGAATACTTGGGAGTGTGCAATACACTTTCTCCAG...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCTGGAGAAAGTGTATTaGACACTCCCAAGTATTCCC +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRLEKVY*TLPSIP
Trigger: GGGAATACTTGGGAGTGTGCAATACACTTTCTCCAG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp CTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTTTCCCCAGTCACCAGTaGAAGGCTGGAGAAAGTGTA +
Preference number: 4 (lower is better)
Translates to: LPRHKQGEKEMLDPRGILFPSHQ*KAGESV
Trigger: TACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAA...AAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCTTCCCCAGTCACCAGTaGAAGGCTGGAGAAAGTGTA +
Preference number: 4 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPFPSHQ*KAGESV
Trigger: TACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAA...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACTGTGGAAGTGGTAAGTaGAGGGAGATCTTCAAACAT +
Preference number: 4 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHCGSGK*REIFKH
Trigger: ATGTTTGAAGATCTCCCTCCACTTACCACTTCCACA...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCTCCTTCCACAGAAAATaGAGCCAAGAGGTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTSFHRK*SQEVCV
Trigger: GACACAGACCTCTTGGCTTCATTTTCTGTGGAAGGA...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATGCTTGGCGTCGATCATaGGCTTATCTCCTTCCACAG +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHAWRRS*AYLLPQ
Trigger: CTGTGGAAGGAGATAAGCTCATGATCGACGCCAAGC...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCCCAACATTTCCAAGATaGACACATCAAAGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGPTFPR*THQSCP
Trigger: TGGGCAACTTTGATGTGTTCATCTTGGAAATGTTGG...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATTGCCACCAAGCTGTCTaGCATTGGTGTATTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHCHQAV*HWCIWG
Trigger: CCCCCAAATACACCAATGGCAGACAGCTTGGTGGCA...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATATACCACATCCACAATaGGGCAGAGCAGGTCAGGGA +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHIPHPQ*GRAGQG
Trigger: TCCCTGACCTGCTCTGCCCCATTGTGGATGTGGTAT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGTGTGGAAGTGGTAAGTaGAGGGAGATCTTCAAACAT +
Preference number: 4 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRCGSGK*REIFKH
Trigger: ATGTTTGAAGATCTCCCTCCACTTACCACTTCCACA...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGATGTGGAAGTGGTAAGTaGAGGGAGATCTTCAAACAT +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGCGSGK*REIFKH
Trigger: ATGTTTGAAGATCTCCCTCCACTTACCACTTCCACA...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCTGTGGAAGTGGTAAGTaGAGGGAGATCTTCAAACAT +
Preference number: 4 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGCGSGK*REIFKH
Trigger: ATGTTTGAAGATCTCCCTCCACTTACCACTTCCACA...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCGATTCCGGGTATTGCTaGAACACCTTGGGAATCAAG +
Preference number: 4 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTDSGYC*NTLGIK
Trigger: CTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATC...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATTGCCATTGGTGTATTTaGGGGGAGGCTCTCGGACAT +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHCHWCI*GEALGH
Trigger: ATGTCCGAGAGCCTCCCCCCAAATACACCAATGGCA...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAACAACCCTCCACTATaGCTATCATCATCATCCAAC +
Preference number: 4 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGNNPPL*LSSSSN
Trigger: GTTGGATGATGATGATAGCCATAGTGGAGGGTTGTT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATGACCCAGCTGGTCATTaGCAAGACCCAATACCACAT +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHDPAGH*QDPIPH
Trigger: ATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTC...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATAAAGTTGCCCACGTTTaGGGTTCTGAGGTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHKVAHV*GSEVEA
Trigger: AGCCTCAACCTCAGAACCTCAAACGTGGGCAACTTT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATTCCACGAGACCCAGCTaGTCATTGACAAGACCCAAT +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHSTRPS*SLTRPN
Trigger: ATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGA...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGCCAACATTTCCAAGATaGACACATCAAAGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRPTFPR*THQSCP
Trigger: TGGGCAACTTTGATGTGTTCATCTTGGAAATGTTGG...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATCACTCTTCTGAATTGTaGCTGAGATGGCATTGCCCA +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHHSSEL*LRWHCP
Trigger: TGGGCAATGCCATCTCAGGCACAATTCAGAAGAGTG...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATGAATTGTGCCTGAGATaGCATTGCCCAGCACATCTT +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHELCLR*HCPAHL
Trigger: AAGATGTGCTGGGCAATGCCATCTCAGGCACAATTC...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR GCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATCTGGAGAAAGTGTATTaGACACTCCCAAGTATTCCC +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHLEKVY*TLPSIP
Trigger: GGGAATACTTGGGAGTGTGCAATACACTTTCTCCAG...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR TCA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATCCAACATTTCCAAGATaGACACATCAAAGTTGCCCA +
Preference number: 4 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHPTFPR*THQSCP
Trigger: TGGGCAACTTTGATGTGTTCATCTTGGAAATGTTGG...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp GCCCAGCAGACCTCCGGGGCCCAGGGCCCCAGTGGCCACACCAGCTaGGATCTCTCCAGGCCTCAGTTCGCGCCGGTAGAGCCTGCCCAC +
Preference number: 5 (lower is better)
Translates to: AQQTSGAQGPSGHTS*DLSRPQFAPVEPAH
Trigger: GTGGGCAGGCTCTACCGGCGCGAACTGAGGCCTGGAGAGATCCCAGCTGGTGTGGCCACTGGGGCCCTGGGCCCCGGAGGTCTGCTGGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS TCA 90 bp CTCTCCAGGCCTCAGTTCGCGCCGGTAGAGCCTGCCCACCGAGGATaGGTCTGCGGCGGATCTGTACCGCCCAGAGCCGCGGTGGTAGGC +
Preference number: 5 (lower is better)
Translates to: LSRPQFAPVEPAHRG*VCGGSVPPRAAVVG
Trigger: GCCTACCACCGCGGCTCTGGGCGGTACAGATCCGCCGCAGACTCATCCTCGGTGGGCAGGCTCTACCGGCGCGAACTGAGGCCTGGAGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 90 bp CACCAGCTGGGATCTCTCCAGGCCTCAGTTCGCGCCGGTAGAGCCTaGCCACCGAGGATGAGTCTGCGGCGGATCTGTACCGCCCAGAGC +
Preference number: 5 (lower is better)
Translates to: HQLGSLQASVRAGRA*PPRMSLRRICTAQS
Trigger: GCTCTGGGCGGTACAGATCCGCCGCAGACTCATCCTCGGTGGGCAGGCTCTACCGGCGCGAACTGAGGCCTGGAGAGATCCCAGCTGGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 90 bp CAAGAAGACCACCTCCACCAAGCAAGCCCCCTTGGCCTGCCAGAATaGCTTCATTTGCCAGCATGCCCCCTGTGCCCAGCAGACCTCCGG +
Preference number: 5 (lower is better)
Translates to: QEDHLHQASPLGLPE*LHLPACPLCPADLR
Trigger: CCGGAGGTCTGCTGGGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTATGGCCAGCTGGGAGTaGGTGTTGTCGCCCATGGGG +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPMASWE*VLSPMG
Trigger: CCCCATGGGCGACAACACCAACTCCCAGCTGGCCAT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 90 bp TCCATCTCCAAGAAGACCACCTCCACCAAGCAAGCCCCCTTGGCCTaGCAGAATGCCTTCATTTGCCAGCATGCCCCCTGTGCCCAGCAG +
Preference number: 5 (lower is better)
Translates to: SISKKTTSTKQAPLA*QNAFICQHAPCAQQ
Trigger: CTGCTGGGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTGGAGATGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp AGTCCTCCATCTCCAAGAAGACCACCTCCACCAAGCAAGCCCCCTTaGCCTGCCAGAATGCCTTCATTTGCCAGCATGCCCCCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: SPPSPRRPPPPSKPP*PARMPSFASMPPVP
Trigger: GGGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTGGAGATGGAGGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp TTGCACCTTGCTTCTGCAGCATGGTCAGCACCGAGCTCAGGAAATTaGCTGAGATGGCCAGCTGGGAGTTGGTGTTGTCGCCCATGGGGG +
Preference number: 5 (lower is better)
Translates to: LHLASAAWSAPSSGN*LRWPAGSWCCRPWG
Trigger: CCCCCATGGGCGACAACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp GGCGAACACCTTCACCAGCGCCTTGTCTTTCTGCAGTGTCACAGTTaGAGGGTTGGGCACCTGGATCCTGATGGTGAGTGGGCGGGATTC +
Preference number: 5 (lower is better)
Translates to: GEHLHQRLVFLQCHS*RVGHLDPDGEWAGF
Trigger: GAATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTATGAGGCTCCTTCCGTaGATGGCCACACGGGTGTAC +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPMRLLP*MATRVY
Trigger: GTACACCCGTGTGGCCATCAACGGAAGGAGCCTCAT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTACCGAGCTCAGGAAATaGGCTGAGATGGCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPTELRK*AEMASW
Trigger: CCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTGTCACAGTTGGAGGGTaGGGCACCTGGATCCTGATG +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPVTVGG*GTWILM
Trigger: CATCAGGATCCAGGTGCCCAACCCTCCAACTGTGAC...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTCTGCAGTGTCACAGTaGGAGGGTTGGGCACCTGGA +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPSAVSQ*EGWAPG
Trigger: TCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGA...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp TTTGATACCTCCCAGGAGGGTGTCACAGCGCTCAATGACCAACCGTaGGTAGCCTGTGCGGTCCATGGTCAGCCGAACTTTGGCCGTGAT +
Preference number: 5 (lower is better)
Translates to: FDTSQEGVTALNDQP*VACAVHGQPNFGRD
Trigger: ATCACGGCCAAAGTTCGGCTGACCATGGACCGCACAGGCTACCCACGGTTGGTCATTGAGCGCTGTGACACCCTCCTGGGAGGTATCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp CAGTGTCACAGTTGGAGGGTTGGGCACCTGGATCCTGATGGTGAGTaGGCGGGATTCCGGGTATTGCTGGAACACCTTGGGAATCAAGGC +
Preference number: 5 (lower is better)
Translates to: QCHSWRVGHLDPDGE*AGFRVLLEHLGNQG
Trigger: GCCTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCAACTGTGACACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp AGCGCCTTGTCTTTCTGCAGTGTCACAGTTGGAGGGTTGGGCACCTaGATCCTGATGGTGAGTGGGCGGGATTCCGGGTATTGCTGGAAC +
Preference number: 5 (lower is better)
Translates to: SALSFCSVTVGGLGT*ILMVSGRDSGYCWN
Trigger: GTTCCAGCAATACCCGGAATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGATGAGGCTCCTTCCGTaGATGGCCACACGGGTGTAC +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKMRLLP*MATRVY
Trigger: GTACACCCGTGTGGCCATCAACGGAAGGAGCCTCAT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGAAGTTGTCCACCAGGTaGGGGAGAAGCCCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKKLSTR*GRSPRS
Trigger: GCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAGGATGGCCAGCTGGGAGTaGGTGTTGTCGCCCATGGGG +
Preference number: 5 (lower is better)
Translates to: SSGEETEARGMHQSECRRMASWE*VLSPMG
Trigger: CCCCATGGGCGACAACACCAACTCCCAGCTGGCCAT...CCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAATGGCCAGCTGGGAGTaGGTGTTGTCGCCCATGGGG +
Preference number: 5 (lower is better)
Translates to: LSSGEETEARGMHQSECRMASWE*VLSPMG
Trigger: CCCCATGGGCGACAACACCAACTCCCAGCTGGCCAT...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGGTCACAGTTGGAGGGTaGGGCACCTGGATCCTGATG +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKVTVGG*GTWILM
Trigger: CATCAGGATCCAGGTGCCCAACCCTCCAACTGTGAC...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACGTCACAGTTGGAGGGTaGGGCACCTGGATCCTGATG +
Preference number: 5 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHVTVGG*GTWILM
Trigger: CATCAGGATCCAGGTGCCCAACCCTCCAACTGTGAC...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS GCA 90 bp GCGGTCCATGGTCAGCCGAACTTTGGCCGTGATGTTTACCTCCACTaGAATATCCAGGAAGCCGATGAGGCTCCTTCCGTTGATGGCCAC +
Preference number: 5 (lower is better)
Translates to: AVHGQPNFGRDVYLH*NIQEADEAPSVDGH
Trigger: GTGGCCATCAACGGAAGGAGCCTCATCGGCTTCCTGGATATTGCAGTGGAGGTAAACATCACGGCCAAAGTTCGGCTGACCATGGACCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp GTGTCCACATCGATGAGGCAGATAGTGGTCTCTACATCGTTGGGCTaGGAGACCACAACTTCAGAGGTGGCGAACACCTTCACCAGCGCC +
Preference number: 5 (lower is better)
Translates to: VSTSMRQIVVSTSLG*ETTTSEVANTFTSA
Trigger: GGCGCTGGTGAAGGTGTTCGCCACCTCTGAAGTTGTGGTCTCCCAGCCCAACGATGTAGAGACCACTATCTGCCTCATCGATGTGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAATGAGGCTCCTTCCGTaGATGGCCACACGGGTGTAC +
Preference number: 5 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGMRLLP*MATRVY
Trigger: GTACACCCGTGTGGCCATCAACGGAAGGAGCCTCAT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCGAAGCAGCTTGACTTaGATACCTCCCAGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKRSSLT*IPPRRV
Trigger: CACCCTCCTGGGAGGTATCAAAGTCAAGCTGCTTCG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAAGTTGTCCACCAGGTaGGGGAGAAGCCCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGKLSTR*GRSPRS
Trigger: GCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGTTGTCCACCAGGTaGGGGAGAAGCCCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRKLSTR*GRSPRS
Trigger: GCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTACTCGGTTCACTAAGTaGTCCACCAGGTTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPTRFTK*STRLGR
Trigger: TCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGAGGTCAGGGAGTACATaGGCCAGCACTCGGTTCACT +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKRSGST*ASTRFT
Trigger: AGTGAACCGAGTGCTGGCCAATGTACTCCCTGACCT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACCGAGCTCAGGAAATaGGCTGAGATGGCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRTELRK*AEMASW
Trigger: CCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGGTCACAGTTGGAGGGTaGGGCACCTGGATCCTGATG +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRVTVGG*GTWILM
Trigger: CATCAGGATCCAGGTGCCCAACCCTCCAACTGTGAC...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCTCTGCAGTGTCACAGTaGGAGGGTTGGGCACCTGGA +
Preference number: 5 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGSAVSQ*EGWAPG
Trigger: TCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGA...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGATCTGCAGTGTCACAGTaGGAGGGTTGGGCACCTGGA +
Preference number: 5 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGSAVSQ*EGWAPG
Trigger: TCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGA...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS TCA 90 bp CTCCCTCAGGGCGGAGCGGAAGGCGTCACTCTTCTGAATTGTGCCTaGGATGGCATTGCCCAGCACATCTTTTGTAACCCTGAGGACTGT +
Preference number: 5 (lower is better)
Translates to: LPQGGAEGVTLLNCA*DGIAQHIFCNPEDC
Trigger: ACAGTCCTCAGGGTTACAAAAGATGTGCTGGGCAATGCCATCTCAGGCACAATTCAGAAGAGTGACGCCTTCCGCTCCGCCCTGAGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 90 bp ACAACTTCAGAGGTGGCGAACACCTTCACCAGCGCCTTGTCTTTCTaGAGTGTCACAGTTGGAGGGTTGGGCACCTGGATCCTGATGGTG +
Preference number: 5 (lower is better)
Translates to: TTSEVANTFTSALSF*SVTVGGLGTWILMV
Trigger: CACCATCAGGATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCCACCTCTGAAGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCGAAGCAGCTTGACTTaGATACCTCCCAGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRRSSLT*IPPRRV
Trigger: CACCCTCCTGGGAGGTATCAAAGTCAAGCTGCTTCG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGACTCGGTTCACTAAGTaGTCCACCAGGTTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKTRFTK*STRLGR
Trigger: TCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCTACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGACTCGGTTCACTAAGTaGTCCACCAGGTTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: PTPSSTNPQCVTHFPLPRTRFTK*STRLGR
Trigger: TCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGT...CCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGTAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGTCAGGGAGTACATaGGCCAGCACTCGGTTCACT +
Preference number: 5 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGRSGST*ASTRFT
Trigger: AGTGAACCGAGTGCTGGCCAATGTACTCCCTGACCT...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTAGACCCAGCTGGTCATaGACAAGACCCAATACCACA +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPRPSWS*TRPNTT
Trigger: TGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp ACTCCCTCCTCCACAAACCCTCAGTGTGTCACCCACTTCCCACTTCCAAGGCACACCTTCACCAGCGCCTaGTCTTTCTGCAGTGTCACA +
Preference number: 5 (lower is better)
Translates to: TPSSTNPQCVTHFPLPRHTFTSA*SFCSVT
Trigger: TGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGT...GTGCCTTGGAAGTGGGAAGTGGGTGACACACTGAGGGTTTGTGGAGGAGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTGCTGAAGTCAATGTaGAGGATTTTGGGCAGGGGG +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPLLKSM*RILGRG
Trigger: CCCCCTGCCCAAAATCCTCAACATTGACTTCAGCAA...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCACCAAGCAAGCCCCCTaGGCCTGCCAGAATGCCTTC +
Preference number: 5 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPTKQAP*ACQNAF
Trigger: GAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGT...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS TCA 90 bp GTATTCCCAGAGGCACCAAAGAGTCCACGAGACCCAGCTGGTCATTaGCAAGACCCAATACCACATCCACAATGGGGCAGAGCAGGTCAG +
Preference number: 5 (lower is better)
Translates to: VFPEAPKSPRDPAGH*QDPIPHPQWGRAGQ
Trigger: CTGACCTGCTCTGCCCCATTGTGGATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGACTCTTTGGTGCCTCTGGGAATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp CCAATACCACATCCACAATGGGGCAGAGCAGGTCAGGGAGTACATTaGCCAGCACTCGGTTCACTAAGTTGTCCACCAGGTTGGGGAGAA +
Preference number: 5 (lower is better)
Translates to: PIPHPQWGRAGQGVH*PALGSLSCPPGWGE
Trigger: TTCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGTGCTGGCCAATGTACTCCCTGACCTGCTCTGCCCCATTGTGGATGTGGTATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp CTCCCAAGTATTCCCAGAGGCACCAAAGAGTCCACGAGACCCAGCTaGTCATTGACAAGACCCAATACCACATCCACAATGGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: LPSIPRGTKESTRPS*SLTRPNTTSTMGQS
Trigger: GCTCTGCCCCATTGTGGATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGACTCTTTGGTGCCTCTGGGAATACTTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp TTGCCCAGCACATCTTTTGTAACCCTGAGGACTGTGGTTGTGTCTTaGCGGATACCACACACAGCTGCCACTGACAGAGCAGCCACACAC +
Preference number: 5 (lower is better)
Translates to: LPSTSFVTLRTVVVS*RIPHTAATDRAATH
Trigger: GTGTGTGGCTGCTCTGTCAGTGGCAGCTGTGTGTGGTATCCGCCAAGACACAACCACAGTCCTCAGGGTTACAAAAGATGTGCTGGGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTATGAGGCTCCTTCCGTaGATGGCCACACGGGTGTAC +
Preference number: 5 (lower is better)
Translates to: LPRHKQGEKEMLDPRGILMRLLP*MATRVY
Trigger: GTACACCCGTGTGGCCATCAACGGAAGGAGCCTCAT...AAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAATGGTCAGCCGAACTTaGGCCGTGATGTTTACCTCC +
Preference number: 5 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGMVSRT*AVMFTS
Trigger: GGAGGTAAACATCACGGCCAAAGTTCGGCTGACCAT...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGCGAAGCAGCTTGACTTaGATACCTCCCAGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGRSSLT*IPPRRV
Trigger: CACCCTCCTGGGAGGTATCAAAGTCAAGCTGCTTCG...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGAAGTTGTCCACCAGGTaGGGGAGAAGCCCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: HFPLPRHKQGEKEMLDPRKLSTR*GRSPRS
Trigger: GCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTT...CCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCACCGAGCTCAGGAAATaGGCTGAGATGGCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTTELRK*AEMASW
Trigger: CCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGT...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGAATGTCCATTGCACCTaGCTTCTGCAGCATGGTCAG +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKNVHCT*LLQHGQ
Trigger: CTGACCATGCTGCAGAAGCAAGGTGCAATGGACATT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCTCTGCAGTGTCACAGTaGGAGGGTTGGGCACCTGGA +
Preference number: 5 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPSAVSQ*EGWAPG
Trigger: TCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGA...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACCTTCACCAGCGCCTaGTCTTTCTGCAGTGTCACA +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRTFTSA*SFCSVT
Trigger: TGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGTTTGAGGTTCTGAGGTaGAGGCTGGTCTTATCCAGC +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKFEVLR*RLVLSS
Trigger: GCTGGATAAGACCAGCCTCAACCTCAGAACCTCAAA...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGCGTCACTCTTCTGAATaGTGCCTGAGATGGCATTGC +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKRHSSE*CLRWHC
Trigger: GCAATGCCATCTCAGGCACAATTCAGAAGAGTGACG...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGACCCAGCTGGTCATaGACAAGACCCAATACCACA +
Preference number: 5 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGRPSWS*TRPNTT
Trigger: TGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCT...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGACCTTCACCAGCGCCTaGTCTTTCTGCAGTGTCACA +
Preference number: 5 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGTFTSA*SFCSVT
Trigger: TGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGT...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCCTGGTCTTATCCAGCTaGGCGTCGATCATGAGCTTA +
Preference number: 5 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGLVLSS*ASIMSL
Trigger: TAAGCTCATGATCGACGCCAAGCTGGATAAGACCAG...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGCTGGTCTTATCCAGCTaGGCGTCGATCATGAGCTTA +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRLVLSS*ASIMSL
Trigger: TAAGCTCATGATCGACGCCAAGCTGGATAAGACCAG...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGATTTGAGGTTCTGAGGTaGAGGCTGGTCTTATCCAGC +
Preference number: 5 (lower is better)
Translates to: GIVGQWGVAGSFPRLRAGFEVLR*RLVLSS
Trigger: GCTGGATAAGACCAGCCTCAACCTCAGAACCTCAAA...TCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGTTTGAGGTTCTGAGGTaGAGGCTGGTCTTATCCAGC +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRFEVLR*RLVLSS
Trigger: GCTGGATAAGACCAGCCTCAACCTCAGAACCTCAAA...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CCCCAGGCTGTCCTGAGCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTATGAACACATCAAAGTaGCCCACGTTTGAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: PQAVLSMALLDNGEWLDPMNTSK*PTFEVL
Trigger: CAGAACCTCAAACGTGGGCAACTTTGATGTGTTCAT...AGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGCTCAGGACAGCCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGTTGCTGAAGTCAATGTaGAGGATTTTGGGCAGGGGG +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRLLKSM*RILGRG
Trigger: CCCCCTGCCCAAAATCCTCAACATTGACTTCAGCAA...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATACCAAGCAAGCCCCCTaGGCCTGCCAGAATGCCTTC +
Preference number: 5 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHTKQAP*ACQNAF
Trigger: GAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 90 bp GACCATATTTGTAATTGCCACCAAGCTGTCTGCCATTGGTGTATTTaGGGGGAGGCTCTCGGACATGGAAGTCGTTGTACGGGACACCAC +
Preference number: 5 (lower is better)
Translates to: DHICNCHQAVCHWCI*GEALGHGSRCTGHH
Trigger: GTGGTGTCCCGTACAACGACTTCCATGTCCGAGAGCCTCCCCCCAAATACACCAATGGCAGACAGCTTGGTGGCAATTACAAATATGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGACTCGGTTCACTAAGTaGTCCACCAGGTTGGGGAGA +
Preference number: 5 (lower is better)
Translates to: KAQTRREGNARPQGDPSWTRFTK*STRLGR
Trigger: TCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGT...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAGGAGACCCAGCTGGTCATaGACAAGACCCAATACCACA +
Preference number: 5 (lower is better)
Translates to: SSGEETEARGMHQSECRRRPSWS*TRPNTT
Trigger: TGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCT...CCTTCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp CTGAGCAGTGGTGAGGAAACTGAGGCAAGGGGAATGCACCAAAGTGAGTGCAGAAATGTCCATTGCACCTaGCTTCTGCAGCATGGTCAG +
Preference number: 5 (lower is better)
Translates to: LSSGEETEARGMHQSECRNVHCT*LLQHGQ
Trigger: CTGACCATGCTGCAGAAGCAAGGTGCAATGGACATT...TCTGCACTCACTTTGGTGCATTCCCCTTGCCTCAGTTTCCTCACCACTGCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGAAGGGGAAGACATCAATGTCTGCGTaGCTGAAGTCAATGTTGAGG +
Preference number: 5 (lower is better)
Translates to: WTMGSGWILSQVKGRKGKTSMSA*LKSMLR
Trigger: CCTCAACATTGACTTCAGCAACGCAGACATTGATGT...CTTCCCCTTCCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGCGTCACTCTTCTGAATaGTGCCTGAGATGGCATTGC +
Preference number: 5 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGRHSSE*CLRWHC
Trigger: GCAATGCCATCTCAGGCACAATTCAGAAGAGTGACG...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS GCA 90 bp TCAAGGAATTCCCCAGTCACCAGTGGAAGGCTGGAGAAAGTGTATTaGACACTCCCAAGTATTCCCAGAGGCACCAAAGAGTCCACGAGA +
Preference number: 5 (lower is better)
Translates to: SRNSPVTSGRLEKVY*TLPSIPRGTKESTR
Trigger: TCTCGTGGACTCTTTGGTGCCTCTGGGAATACTTGGGAGTGTGCAATACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAATTCCTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 90 bp TCAAACATGCCATCAGTGATGTCAATGTCCATTGCACCTTGCTTCTaGAGCATGGTCAGCACCGAGCTCAGGAAATTGGCTGAGATGGCC +
Preference number: 5 (lower is better)
Translates to: SNMPSVMSMSIAPCF*SMVSTELRKLAEMA
Trigger: GGCCATCTCAGCCAATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAATGGACATTGACATCACTGATGGCATGTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATCGAAGCAGCTTGACTTaGATACCTCCCAGGAGGGTG +
Preference number: 5 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHRSSLT*IPPRRV
Trigger: CACCCTCCTGGGAGGTATCAAAGTCAAGCTGCTTCG...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAATGTCCATTGCACCTaGCTTCTGCAGCATGGTCAG +
Preference number: 5 (lower is better)
Translates to: KAQTRREGNARPQGDPSWNVHCT*LLQHGQ
Trigger: CTGACCATGCTGCAGAAGCAAGGTGCAATGGACATT...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCTTTGAGGTTCTGAGGTaGAGGCTGGTCTTATCCAGC +
Preference number: 5 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPFEVLR*RLVLSS
Trigger: GCTGGATAAGACCAGCCTCAACCTCAGAACCTCAAA...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGATGAACACATCAAAGTaGCCCACGTTTGAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRMNTSK*PTFEVL
Trigger: CAGAACCTCAAACGTGGGCAACTTTGATGTGTTCAT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp ACCCACTTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCTTGCTGAAGTCAATGTaGAGGATTTTGGGCAGGGGG +
Preference number: 5 (lower is better)
Translates to: THFPLPRHKQGEKEMLDPLLKSM*RILGRG
Trigger: CCCCCTGCCCAAAATCCTCAACATTGACTTCAGCAA...GGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAAGTGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GCATGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCACATCAATGTCTGCGTaGCTGAAGTCAATGTTGAGG +
Preference number: 5 (lower is better)
Translates to: AWHCWTMGSGWILSQVKGTSMSA*LKSMLR
Trigger: CCTCAACATTGACTTCAGCAACGCAGACATTGATGT...GCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TGGCATTGTTGGACAATGGGGAGTGGCTGGATCCTTTCCCAGGTTAAGGGCAGGACATCAATGTCTGCGTaGCTGAAGTCAATGTTGAGG +
Preference number: 5 (lower is better)
Translates to: WHCWTMGSGWILSQVKGRTSMSA*LKSMLR
Trigger: CCTCAACATTGACTTCAGCAACGCAGACATTGATGT...CCTGCCCTTAACCTGGGAAAGGATCCAGCCACTCCCCATTGTCCAACAATGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGCGTCACTCTTCTGAATaGTGCCTGAGATGGCATTGC +
Preference number: 5 (lower is better)
Translates to: KAQTRREGNARPQGDPSWRHSSE*CLRWHC
Trigger: GCAATGCCATCTCAGGCACAATTCAGAAGAGTGACG...CCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS CCA 90 bp CTGGAACACCTTGGGAATCAAGGCCCCCAGTGTGGAAGTGGTAAGTaGAGGGAGATCTTCAAACATGCCATCAGTGATGTCAATGTCCAT +
Preference number: 5 (lower is better)
Translates to: LEHLGNQGPQCGSGK*REIFKHAISDVNVH
Trigger: ATGGACATTGACATCACTGATGGCATGTTTGAAGATCTCCCTCCACTTACCACTTCCACACTGGGGGCCTTGATTCCCAAGGTGTTCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATACCTTCACCAGCGCCTaGTCTTTCTGCAGTGTCACA +
Preference number: 5 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHTFTSA*SFCSVT
Trigger: TGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp TTCCCACTTCCAAGGCACAAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATGAACACATCAAAGTaGCCCACGTTTGAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: FPLPRHKQGEKEMLDPRGMNTSK*PTFEVL
Trigger: CAGAACCTCAAACGTGGGCAACTTTGATGTGTTCAT...CCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTTGTGCCTTGGAAGTGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS GCA 90 bp TGGAGGGAGATCTTCAAACATGCCATCAGTGATGTCAATGTCCATTaGACCTTGCTTCTGCAGCATGGTCAGCACCGAGCTCAGGAAATT +
Preference number: 5 (lower is better)
Translates to: WREIFKHAISDVNVH*TLLLQHGQHRAQEI
Trigger: AATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAATGGACATTGACATCACTGATGGCATGTTTGAAGATCTCCCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATAGACCCAGCTGGTCATaGACAAGACCCAATACCACA +
Preference number: 5 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHRPSWS*TRPNTT
Trigger: TGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATAATGTCCATTGCACCTaGCTTCTGCAGCATGGTCAG +
Preference number: 5 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHNVHCT*LLQHGQ
Trigger: CTGACCATGCTGCAGAAGCAAGGTGCAATGGACATT...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp GGGCGGTGTCTAGGACAATCCTCTCTGAAGATGGTTGACTTCTTCTCATGTCATCTGGTCTTATCCAGCTaGGCGTCGATCATGAGCTTA +
Preference number: 5 (lower is better)
Translates to: GRCLGQSSLKMVDFFSCHLVLSS*ASIMSL
Trigger: TAAGCTCATGATCGACGCCAAGCTGGATAAGACCAG...ATGACATGAGAAGAAGTCAACCATCTTCAGAGAGGATTGTCCTAGACACCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS-3UTR CAA 90 bp AAACAAGGAGAGAAGGAAATGCTAGACCCCAGGGGGATCCTTCATGGAGACACCATGAACACATCAAAGTaGCCCACGTTTGAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: KQGEKEMLDPRGILHGDTMNTSK*PTFEVL
Trigger: CAGAACCTCAAACGTGGGCAACTTTGATGTGTTCAT...GGTGTCTCCATGAAGGATCCCCCTGGGGTCTAGCATTTCCTTCTCTCCTTGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000109757.8
ENSMUST00000154281.3
CDS CCA 72 bp ACCTCCGGGGCCCAGGGCCCCAGTGGCCACACCAGCTaGGATCTCTCCAGGCCTCAGTTCGCGCCGGTAGAG +
Preference number: 6 (lower is better)
Translates to: TSGAQGPSGHTS*DLSRPQFAPVE
Trigger: CTCTACCGGCGCGAACTGAGGCCTGGAGAGATCCCAGCTGGTGTGGCCACTGGGGCCCTGGGCCCCGGAGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp CATAGCGGTGCCTGCCACCACCCAAAAGGCCACCACTaGCGCCCAGCAGTCCCCCACCATGGCTGCCACCAC +
Preference number: 6 (lower is better)
Translates to: HSGACHHPKGHH*RPAVPHHGCHH
Trigger: GTGGTGGCAGCCATGGTGGGGGACTGCTGGGCGGCAGTGGTGGCCTTTTGGGTGGTGGCAGGCACCGCTATG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS GCA 72 bp AAGCAAGCCCCCTTGGCCTGCCAGAATGCCTTCATTTaGCAGCATGCCCCCTGTGCCCAGCAGACCTCCGGG +
Preference number: 6 (lower is better)
Translates to: KQAPLACQNAFI*QHAPCAQQTSG
Trigger: CCCGGAGGTCTGCTGGGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp CACCTCCACCAAGCAAGCCCCCTTGGCCTGCCAGAATaGCTTCATTTGCCAGCATGCCCCCTGTGCCCAGCA +
Preference number: 6 (lower is better)
Translates to: HLHQASPLGLPE*LHLPACPLCPA
Trigger: TGCTGGGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp GCATGGTCAGCACCGAGCTCAGGAAATTGGCTGAGATaGCCAGCTGGGAGTTGGTGTTGTCGCCCATGGGGG +
Preference number: 6 (lower is better)
Translates to: AWSAPSSGNWLR*PAGSWCCRPWG
Trigger: CCCCCATGGGCGACAACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGTGCTGACCATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS TCA 72 bp TGTCTGGAGGACGGTAGTCTTCATGCCGTAGGTCCCTaGGGCTCCCATCGGAGTCCAGGATCTCCCCATAGC +
Preference number: 6 (lower is better)
Translates to: CLEDGSLHAVGP*GSHRSPGSPHS
Trigger: GCTATGGGGAGATCCTGGACTCCGATGGGAGCCTCAGGGACCTACGGCATGAAGACTACCGTCCTCCAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp GGAATTCAGCTCGTCTGTAGTCATCATAGCGGTGCCTaGCACCACCCAAAAGGCCACCACTGCCGCCCAGCA +
Preference number: 6 (lower is better)
Translates to: GIQLVCSHHSGA*HHPKGHHCRPA
Trigger: TGCTGGGCGGCAGTGGTGGCCTTTTGGGTGGTGGCAGGCACCGCTATGATGACTACAGACGAGCTGAATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154281.3
CDS CCA 72 bp TCCCAGGAGGGTGTCACAGCGCTCAATGACCAACCGTaGGTAGCCTGTGCGGTCCATGGTCAGCCGAACTTT +
Preference number: 6 (lower is better)
Translates to: SQEGVTALNDQP*VACAVHGQPNF
Trigger: AAAGTTCGGCTGACCATGGACCGCACAGGCTACCCACGGTTGGTCATTGAGCGCTGTGACACCCTCCTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp CTGAGATGGCCAGCTGGGAGTTGGTGTTGTCGCCCATaGGGGGTAGTTCTGGCATCTGTGGCCTGGGCAATA +
Preference number: 6 (lower is better)
Translates to: LRWPAGSWCCRP*GVVLASVAWAI
Trigger: TATTGCCCAGGCCACAGATGCCAGAACTACCCCCCATGGGCGACAACACCAACTCCCAGCTGGCCATCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp AGTTGGAGGGTTGGGCACCTGGATCCTGATGGTGAGTaGGCGGGATTCCGGGTATTGCTGGAACACCTTGGG +
Preference number: 6 (lower is better)
Translates to: SWRVGHLDPDGE*AGFRVLLEHLG
Trigger: CCCAAGGTGTTCCAGCAATACCCGGAATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCAACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp AAGTCCTCCATCTCCAAGAAGACCACCTCCACCAAGCAAGCCCCCTaGGCCTGCCAGAATGCCTTCATTTGCCAGCATGCCCCCTGTGCC +
Preference number: 6 (lower is better)
Translates to: KSSISKKTTSTKQAP*ACQNAFICQHAPCA
Trigger: GGCACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTGGAGATGGAGGACTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp ATTGCACCTTGCTTCTGCAGCATGGTCAGCACCGAGCTCAGGAAATaGGCTGAGATGGCCAGCTGGGAGTTGGTGTTGTCGCCCATGGGG +
Preference number: 6 (lower is better)
Translates to: IAPCFCSMVSTELRK*AEMASWELVLSPMG
Trigger: CCCCATGGGCGACAACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp ACCTTCACCAGCGCCTTGTCTTTCTGCAGTGTCACAGTTGGAGGGTaGGGCACCTGGATCCTGATGGTGAGTGGGCGGGATTCCGGGTAT +
Preference number: 6 (lower is better)
Translates to: TFTSALSFCSVTVGG*GTWILMVSGRDSGY
Trigger: ATACCCGGAATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp GAGGTGGCGAACACCTTCACCAGCGCCTTGTCTTTCTaGAGTGTCACAGTTGGAGGGTTGGGCACCTGGATC +
Preference number: 6 (lower is better)
Translates to: EVANTFTSALSF*SVTVGGLGTWI
Trigger: GATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCCACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp AAGAAGACCACCTCCACCAAGCAAGCCCCCTTGGCCTaGCAGAATGCCTTCATTTGCCAGCATGCCCCCTGT +
Preference number: 6 (lower is better)
Translates to: KKTTSTKQAPLA*QNAFICQHAPC
Trigger: ACAGGGGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp GCTTCTGCAGCATGGTCAGCACCGAGCTCAGGAAATTaGCTGAGATGGCCAGCTGGGAGTTGGTGTTGTCGC +
Preference number: 6 (lower is better)
Translates to: ASAAWSAPSSGN*LRWPAGSWCCR
Trigger: GCGACAACACCAACTCCCAGCTGGCCATCTCAGCCAATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp TCTCCAAGAAGACCACCTCCACCAAGCAAGCCCCCTTaGCCTGCCAGAATGCCTTCATTTGCCAGCATGCCC +
Preference number: 6 (lower is better)
Translates to: SPRRPPPPSKPP*PARMPSFASMP
Trigger: GGGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTGGAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp TTGTCCACCAGGTTGGGGAGAAGCCCTCGAAGCAGCTaGACTTTGATACCTCCCAGGAGGGTGTCACAGCGC +
Preference number: 6 (lower is better)
Translates to: LSTRLGRSPRSS*TLIPPRRVSQR
Trigger: GCGCTGTGACACCCTCCTGGGAGGTATCAAAGTCAAGCTGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp CTGGATCCTGATGGTGAGTGGGCGGGATTCCGGGTATaGCTGGAACACCTTGGGAATCAAGGCCCCCAGTGT +
Preference number: 6 (lower is better)
Translates to: LDPDGEWAGFRV*LEHLGNQGPQC
Trigger: ACACTGGGGGCCTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATCCCGCCCACTCACCATCAGGATCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp AGCGCCTTGTCTTTCTGCAGTGTCACAGTTGGAGGGTaGGGCACCTGGATCCTGATGGTGAGTGGGCGGGAT +
Preference number: 6 (lower is better)
Translates to: SALSFCSVTVGG*GTWILMVSGRD
Trigger: ATCCCGCCCACTCACCATCAGGATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp TGGGAGACCACAACTTCAGAGGTGGCGAACACCTTCACCAGCGCCTaGTCTTTCTGCAGTGTCACAGTTGGAGGGTTGGGCACCTGGATC +
Preference number: 6 (lower is better)
Translates to: WETTTSEVANTFTSA*SFCSVTVGGLGTWI
Trigger: GATCCAGGTGCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCCACCTCTGAAGTTGTGGTCTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp ATCCTGATGGTGAGTGGGCGGGATTCCGGGTATTGCTaGAACACCTTGGGAATCAAGGCCCCCAGTGTGGAA +
Preference number: 6 (lower is better)
Translates to: ILMVSGRDSGYC*NTLGIKAPSVE
Trigger: TTCCACACTGGGGGCCTTGATTCCCAAGGTGTTCCAGCAATACCCGGAATCCCGCCCACTCACCATCAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp TCAGGGAGTACATTGGCCAGCACTCGGTTCACTAAGTaGTCCACCAGGTTGGGGAGAAGCCCTCGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: SGSTLASTRFTK*STRLGRSPRSS
Trigger: GCTGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTTAGTGAACCGAGTGCTGGCCAATGTACTCCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp ATCTCCAAGAAGACCACCTCCACCAAGCAAGCCCCCTaGGCCTGCCAGAATGCCTTCATTTGCCAGCATGCC +
Preference number: 6 (lower is better)
Translates to: ISKKTTSTKQAP*ACQNAFICQHA
Trigger: GGCATGCTGGCAAATGAAGGCATTCTGGCAGGCCAAGGGGGCTTGCTTGGTGGAGGTGGTCTTCTTGGAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp AAGTTGTCCACCAGGTTGGGGAGAAGCCCTCGAAGCAGCTTGACTTaGATACCTCCCAGGAGGGTGTCACAGCGCTCAATGACCAACCGT +
Preference number: 6 (lower is better)
Translates to: KLSTRLGRSPRSSLT*IPPRRVSQRSMTNR
Trigger: ACGGTTGGTCATTGAGCGCTGTGACACCCTCCTGGGAGGTATCAAAGTCAAGCTGCTTCGAGGGCTTCTCCCCAACCTGGTGGACAACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp CTACATCGTTGGGCTGGGAGACCACAACTTCAGAGGTaGCGAACACCTTCACCAGCGCCTTGTCTTTCTGCA +
Preference number: 6 (lower is better)
Translates to: LHRWAGRPQLQR*RTPSPAPCLSA
Trigger: TGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCCACCTCTGAAGTTGTGGTCTCCCAGCCCAACGATGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp ACAACTTCAGAGGTGGCGAACACCTTCACCAGCGCCTaGTCTTTCTGCAGTGTCACAGTTGGAGGGTTGGGC +
Preference number: 6 (lower is better)
Translates to: TTSEVANTFTSA*SFCSVTVGGLG
Trigger: GCCCAACCCTCCAACTGTGACACTGCAGAAAGACAAGGCGCTGGTGAAGGTGTTCGCCACCTCTGAAGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp AGGTCTGTGTCCACATCGATGAGGCAGATAGTGGTCTCTACATCGTaGGGCTGGGAGACCACAACTTCAGAGGTGGCGAACACCTTCACC +
Preference number: 6 (lower is better)
Translates to: RSVSTSMRQIVVSTS*GWETTTSEVANTFT
Trigger: GGTGAAGGTGTTCGCCACCTCTGAAGTTGTGGTCTCCCAGCCCAACGATGTAGAGACCACTATCTGCCTCATCGATGTGGACACAGACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS TCA 72 bp GGCGGAGCGGAAGGCGTCACTCTTCTGAATTGTGCCTaGGATGGCATTGCCCAGCACATCTTTTGTAACCCT +
Preference number: 6 (lower is better)
Translates to: GGAEGVTLLNCA*DGIAQHIFCNP
Trigger: AGGGTTACAAAAGATGTGCTGGGCAATGCCATCTCAGGCACAATTCAGAAGAGTGACGCCTTCCGCTCCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp GGTCAGCCGAACTTTGGCCGTGATGTTTACCTCCACTaGAATATCCAGGAAGCCGATGAGGCTCCTTCCGTT +
Preference number: 6 (lower is better)
Translates to: GQPNFGRDVYLH*NIQEADEAPSV
Trigger: AACGGAAGGAGCCTCATCGGCTTCCTGGATATTGCAGTGGAGGTAAACATCACGGCCAAAGTTCGGCTGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp TCGATGAGGCAGATAGTGGTCTCTACATCGTTGGGCTaGGAGACCACAACTTCAGAGGTGGCGAACACCTTC +
Preference number: 6 (lower is better)
Translates to: SMRQIVVSTSLG*ETTTSEVANTF
Trigger: GAAGGTGTTCGCCACCTCTGAAGTTGTGGTCTCCCAGCCCAACGATGTAGAGACCACTATCTGCCTCATCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp AGAGGCACCAAAGAGTCCACGAGACCCAGCTGGTCATaGACAAGACCCAATACCACATCCACAATGGGGCAG +
Preference number: 6 (lower is better)
Translates to: RGTKESTRPSWS*TRPNTTSTMGQ
Trigger: CTGCCCCATTGTGGATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGACTCTTTGGTGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp TCCACATCGATGAGGCAGATAGTGGTCTCTACATCGTaGGGCTGGGAGACCACAACTTCAGAGGTGGCGAAC +
Preference number: 6 (lower is better)
Translates to: STSMRQIVVSTS*GWETTTSEVAN
Trigger: GTTCGCCACCTCTGAAGTTGTGGTCTCCCAGCCCAACGATGTAGAGACCACTATCTGCCTCATCGATGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp AGTATTCCCAGAGGCACCAAAGAGTCCACGAGACCCAGCTGGTCATaGACAAGACCCAATACCACATCCACAATGGGGCAGAGCAGGTCA +
Preference number: 6 (lower is better)
Translates to: SIPRGTKESTRPSWS*TRPNTTSTMGQSRS
Trigger: TGACCTGCTCTGCCCCATTGTGGATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGACTCTTTGGTGCCTCTGGGAATACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp TCCCCAGTCACCAGTGGAAGGCTGGAGAAAGTGTATTaGACACTCCCAAGTATTCCCAGAGGCACCAAAGAG +
Preference number: 6 (lower is better)
Translates to: SPVTSGRLEKVY*TLPSIPRGTKE
Trigger: CTCTTTGGTGCCTCTGGGAATACTTGGGAGTGTGCAATACACTTTCTCCAGCCTTCCACTGGTGACTGGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp CTCAAGGAATTCCCCAGTCACCAGTGGAAGGCTGGAGAAAGTGTATaGCACACTCCCAAGTATTCCCAGAGGCACCAAAGAGTCCACGAG +
Preference number: 6 (lower is better)
Translates to: LKEFPSHQWKAGESV*HTPKYSQRHQRVHE
Trigger: CTCGTGGACTCTTTGGTGCCTCTGGGAATACTTGGGAGTGTGCAATACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAATTCCTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp CCATCAGTGATGTCAATGTCCATTGCACCTTGCTTCTaGAGCATGGTCAGCACCGAGCTCAGGAAATTGGCT +
Preference number: 6 (lower is better)
Translates to: PSVMSMSIAPCF*SMVSTELRKLA
Trigger: AGCCAATTTCCTGAGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAATGGACATTGACATCACTGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp ATTCCCAGAGGCACCAAAGAGTCCACGAGACCCAGCTaGTCATTGACAAGACCCAATACCACATCCACAATG +
Preference number: 6 (lower is better)
Translates to: IPRGTKESTRPS*SLTRPNTTSTM
Trigger: CATTGTGGATGTGGTATTGGGTCTTGTCAATGACCAGCTGGGTCTCGTGGACTCTTTGGTGCCTCTGGGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp CTTGGGAATCAAGGCCCCCAGTGTGGAAGTGGTAAGTaGAGGGAGATCTTCAAACATGCCATCAGTGATGTC +
Preference number: 6 (lower is better)
Translates to: LGNQGPQCGSGK*REIFKHAISDV
Trigger: GACATCACTGATGGCATGTTTGAAGATCTCCCTCCACTTACCACTTCCACACTGGGGGCCTTGATTCCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp ACATCTTTTGTAACCCTGAGGACTGTGGTTGTGTCTTaGCGGATACCACACACAGCTGCCACTGACAGAGCA +
Preference number: 6 (lower is better)
Translates to: TSFVTLRTVVVS*RIPHTAATDRA
Trigger: TGCTCTGTCAGTGGCAGCTGTGTGTGGTATCCGCCAAGACACAACCACAGTCCTCAGGGTTACAAAAGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp CCAACTCAAGGAATTCCCCAGTCACCAGTGGAAGGCTaGAGAAAGTGTATTGCACACTCCCAAGTATTCCCA +
Preference number: 6 (lower is better)
Translates to: PTQGIPQSPVEG*RKCIAHSQVFP
Trigger: TGGGAATACTTGGGAGTGTGCAATACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAATTCCTTGAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 72 bp AACACATCAAAGTTGCCCACGTTTGAGGTTCTGAGGTaGAGGCTGGTCTTATCCAGCTTGGCGTCGATCATG +
Preference number: 6 (lower is better)
Translates to: NTSKLPTFEVLR*RLVLSSLASIM
Trigger: CATGATCGACGCCAAGCTGGATAAGACCAGCCTCAACCTCAGAACCTCAAACGTGGGCAACTTTGATGTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CAA 90 bp AGAAGGTCCTCCAACACATCAATGTCTGCGTTGCTGAAGTCAATGTaGAGGATTTTGGGCAGGGGGACTCCAGAACCCAGTATAGCATTC +
Preference number: 6 (lower is better)
Translates to: RRSSNTSMSALLKSM*RILGRGTPEPSIAF
Trigger: GAATGCTATACTGGGTTCTGGAGTCCCCCTGCCCAAAATCCTCAACATTGACTTCAGCAACGCAGACATTGATGTGTTGGAGGACCTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS GCA 72 bp ATCTTCAAACATGCCATCAGTGATGTCAATGTCCATTaGACCTTGCTTCTGCAGCATGGTCAGCACCGAGCT +
Preference number: 6 (lower is better)
Translates to: IFKHAISDVNVH*TLLLQHGQHRA
Trigger: AGCTCGGTGCTGACCATGCTGCAGAAGCAAGGTGCAATGGACATTGACATCACTGATGGCATGTTTGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3
CDS CCA 72 bp ATTAAGGTCCAACTCAAGGAATTCCCCAGTCACCAGTaGAAGGCTGGAGAAAGTGTATTGCACACTCCCAAG +
Preference number: 6 (lower is better)
Translates to: IKVQLKEFPSHQ*KAGESVLHTPK
Trigger: CTTGGGAGTGTGCAATACACTTTCTCCAGCCTTCCACTGGTGACTGGGGAATTCCTTGAGTTGGACCTTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000099181.2
ENSMUST00000109757.8
ENSMUST00000109759.9
ENSMUST00000154281.3