Pregenerated sensors for BPIFA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027484Ensembl transcript IDs: ENSMUST00000028986.3
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TATGGCTCCCCCTTCTGTGAGCCATGTAAGCTGGGCAGGAGGGAGTaGACAGAGCAGCAAGAAATGGTTCATTGCAGCAGAGATAGGTTC | + |
|
Preference number: 1 (lower is better) Translates to: YGSPFCEPCKLGRRE*TEQQEMVHCSRDRF Trigger: GAACCTATCTCTGCTGCAATGAACCATTTCTTGCTGCTCTGTCCACTCCCTCCTGCCCAGCTTACATGGCTCACAGAAGGGGGAGCCATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| 3UTR CCA 90 bp | ACCATTTTCCAGGATATGGCTCCCCCTTCTGTGAGCCATGTAAGCTaGGCAGGAGGGAGTGGACAGAGCAGCAAGAAATGGTTCATTGCA | + |
|
Preference number: 1 (lower is better) Translates to: TIFQDMAPPSVSHVS*AGGSGQSSKKWFIA Trigger: TGCAATGAACCATTTCTTGCTGCTCTGTCCACTCCCTCCTGCCCAGCTTACATGGCTCACAGAAGGGGGAGCCATATCCTGGAAAATGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| 3UTR TCA 90 bp | CATGGAATATTCATCAAGCCTGAGAAAGGAGGAGAGCAGGTTTCTTaGGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCCTTCT | + |
|
Preference number: 1 (lower is better) Translates to: HGIFIKPEKGGEQVS*EGGHTIFQDMAPPS Trigger: AGAAGGGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGCTCTCCTCCTTTCTCAGGCTTGATGAATATTCCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| 3UTR-3UTR CCA 90 bp | AGAGCAGGTTTCTTGAGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCCCTGGGCAGGAGGGAGTaGACAGAGCAGCAAGAAATG | + |
|
Preference number: 2 (lower is better) Translates to: RAGFLRRWPYHFPGYGSPLGRRE*TEQQEM Trigger: CATTTCTTGCTGCTCTGTCCACTCCCTCCTGCCCAG...GGGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGCTCT 53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| 3UTR-3UTR GCA 90 bp | GAGAGCAGGTTTCTTGAGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCCAAGAAATGGTTCATTaGAGCAGAGATAGGTTCGTT | + |
|
Preference number: 2 (lower is better) Translates to: ESRFLEKVAIPFSRIWLPQEMVH*SRDRFV Trigger: AACGAACCTATCTCTGCTGCAATGAACCATTTCTTG...GGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGCTCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| 3UTR CCA 72 bp | CAGGATATGGCTCCCCCTTCTGTGAGCCATGTAAGCTaGGCAGGAGGGAGTGGACAGAGCAGCAAGAAATGG | + |
|
Preference number: 3 (lower is better) Translates to: QDMAPPSVSHVS*AGGSGQSSKKW Trigger: CCATTTCTTGCTGCTCTGTCCACTCCCTCCTGCCCAGCTTACATGGCTCACAGAAGGGGGAGCCATATCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR GCA 90 bp | GGTGGCCATACCATTTTCCAGGATATGGCTCCCCCTTCTGTGAGCCATGTAAGCCTGCCAGCTGGGCTGTaGTCTGGGCCAGCAGCCCAC | + |
|
Preference number: 4 (lower is better) Translates to: GGHTIFQDMAPPSVSHVSLPAGL*SGPAAH Trigger: GTGGGCTGCTGGCCCAGAGCACAGCCCAGCTGGCAG...GCTTACATGGCTCACAGAAGGGGGAGCCATATCCTGGAAAATGGTATGGCCACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR GCA 90 bp | TTCCAGGATATGGCTCCCCCTTCTGTGAGCCATGTAAGCTGGGCAGGAGGGAGTGGACACACCACACCCTaGACCAGGCCAGGAATGACT | + |
|
Preference number: 4 (lower is better) Translates to: FQDMAPPSVSHVSWAGGSGHTTP*TRPGMT Trigger: AGTCATTCCTGGCCTGGTGCAGGGTGTGGTGTGTCC...ACTCCCTCCTGCCCAGCTTACATGGCTCACAGAAGGGGGAGCCATATCCTGGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR CCA 90 bp | AGGAGGGAGTGGACAGAGCAGCAAGAAATGGTTCATTGCAGCAGAGATAGGTTCAGCTGGGCTGTGCTCTaGGCCAGCAGCCCACAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: RREWTEQQEMVHCSRDRFSWAVL*ASSPQR Trigger: CCTCTGTGGGCTGCTGGCCCAGAGCACAGCCCAGCT...GAACCTATCTCTGCTGCAATGAACCATTTCTTGCTGCTCTGTCCACTCCCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR CCA 90 bp | GAGAGCAGGTTTCTTGAGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCAGTGACCCATGGACATaGGCAGATCTTGGCCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ESRFLEKVAIPFSRIWLPSDPWT*ADLGPG Trigger: CCCTGGGCCAAGATCTGCCCATGTCCATGGGTCACT...GGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR GCA 90 bp | GAGTGGACAGAGCAGCAAGAAATGGTTCATTGCAGCAGAGATAGGTTCGTTCTTGGGATAGGGCAGTCCTaGCAGCTGGGCTGTGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: EWTEQQEMVHCSRDRFVLGIGQS*QLGCAL Trigger: CAGAGCACAGCCCAGCTGGCAGGACTGCCCTATCCC...AAGAACGAACCTATCTCTGCTGCAATGAACCATTTCTTGCTGCTCTGTCCACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR TCA 90 bp | TTCCAGGATATGGCTCCCCCTTCTGTGAGCCATGTAAGCTGGGCAGGAGGGAGTCATAGACTTCTGCAGTaGCATCTAGCTTCACAGATA | + |
|
Preference number: 4 (lower is better) Translates to: FQDMAPPSVSHVSWAGGSHRLLQ*HLASQI Trigger: TATCTGTGAAGCTAGATGTCACTGCAGAAGTCTATG...ACTCCCTCCTGCCCAGCTTACATGGCTCACAGAAGGGGGAGCCATATCCTGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR GCA 90 bp | GAGAGCAGGTTTCTTGAGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCAGGAGATACGCAAGCTaGCAGGAGGGTATATACAGT | + |
|
Preference number: 4 (lower is better) Translates to: ESRFLEKVAIPFSRIWLPRRYAS*QEGIYS Trigger: ACTGTATATACCCTCCTGGCAGCTTGCGTATCTCCT...GGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR CCA 90 bp | AGCAGGTTTCTTGAGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCCTTAAGTTTCTATCAAGATaGTCTGAAGGATATGTAGAC | + |
|
Preference number: 4 (lower is better) Translates to: SRFLEKVAIPFSRIWLPLKFLSR*SEGYVD Trigger: GTCTACATATCCTTCAGACCATCTTGATAGAAACTT...AAGGGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS GCA 90 bp | TCCAAGAGGCTGAGAACCCCATTGACCAGAGGACACACCACACCCTaGACCAGGCCAGGAATGACTCTAGTCAAGATGTCTGTGAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SKRLRTPLTRGHTTP*TRPGMTLVKMSVRL Trigger: CAGCCTCACAGACATCTTGACTAGAGTCATTCCTGGCCTGGTGCAGGGTGTGGTGTGTCCTCTGGTCAATGGGGTTCTCAGCCTCTTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR CAA 90 bp | GCAGGTTTCTTGAGAAGGTGGCCATACCATTTTCCAGGATATGGCTCCCCCTTCAGGCTGAGAACCCCATaGACCAGAGGACACACCACA | + |
|
Preference number: 5 (lower is better) Translates to: AGFLRRWPYHFPGYGSPFRLRTP*TRGHTT Trigger: TGTGGTGTGTCCTCTGGTCAATGGGGTTCTCAGCCT...GAAGGGGGAGCCATATCCTGGAAAATGGTATGGCCACCTTCTCAAGAAACCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CCA 90 bp | CAGACTTCCAACCACCAGTGTGTTCACTCTGAGATCAAAGCCCAGTaGGATGGTGACATAGAGGCGGTGGAAATCATAGCTCTGCACAAG | + |
|
Preference number: 5 (lower is better) Translates to: QTSNHQCVHSEIKAQ*DGDIEAVEIIALHK Trigger: CTTGTGCAGAGCTATGATTTCCACCGCCTCTATGTCACCATCCCACTGGGCTTTGATCTCAGAGTGAACACACTGGTGGTTGGAAGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS TCA 90 bp | CAGGCCGTGTCTGAAAGCATCTCTGAAGTTTCTATCAAGATGGTCTaGAGGATATGTAGACACGACTGGAGTCACTCCGTAGTAGGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: QAVSESISEVSIKMV*RICRHDWSHSVVGQ Trigger: CTGCCCTACTACGGAGTGACTCCAGTCGTGTCTACATATCCTTCAGACCATCTTGATAGAAACTTCAGAGATGCTTTCAGACACGGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS GCA 90 bp | GGAATGACTCTAGTCAAGATGTCTGTGAGGCTGTCTATAAGGTTTTaGAGGGGACCAAGTCTATTAAGCAAGGAGATACGCAAGCTGCCA | + |
|
Preference number: 5 (lower is better) Translates to: GMTLVKMSVRLSIRF*RGPSLLSKEIRKLP Trigger: TGGCAGCTTGCGTATCTCCTTGCTTAATAGACTTGGTCCCCTGCAAAACCTTATAGACAGCCTCACAGACATCTTGACTAGAGTCATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS-3UTR CAA 90 bp | GGACAGAGCAGCAAGAAATGGTTCATTGCAGCAGAGATAGGTTCGTTCTTGGAATGTTCAAGAGAGGGATaGATGAAATCACTTTTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: GQSSKKWFIAAEIGSFLECSREG*MKSLFQ Trigger: TTGGAAAAGTGATTTCATCAATCCCTCTCTTGAACA...TTCCAAGAACGAACCTATCTCTGCTGCAATGAACCATTTCTTGCTGCTCTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CAA 90 bp | GCCCACGTGCAAGGACCGGCAGTGACCCATGGACATGGGCAGATCTaGGCCCAGGGGATAGGGCAGTCCTGCCAGCTGGGCTGTGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: AHVQGPAVTHGHGQI*AQGIGQSCQLGCAL Trigger: CAGAGCACAGCCCAGCTGGCAGGACTGCCCTATCCCCTGGGCCAAGATCTGCCCATGTCCATGGGTCACTGCCGGTCCTTGCACGTGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CAA 72 bp | TGTGCTAGGGTGACGTCCAAGAGGCTGAGAACCCCATaGACCAGAGGACACACCACACCCTGCACCAGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: CARVTSKRLRTP*TRGHTTPCTRP Trigger: TGGCCTGGTGCAGGGTGTGGTGTGTCCTCTGGTCAATGGGGTTCTCAGCCTCTTGGACGTCACCCTAGCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CAA 90 bp | GCAACATCATGTGCTAGGGTGACGTCCAAGAGGCTGAGAACCCCATaGACCAGAGGACACACCACACCCTGCACCAGGCCAGGAATGACT | + |
|
Preference number: 6 (lower is better) Translates to: ATSCARVTSKRLRTP*TRGHTTPCTRPGMT Trigger: AGTCATTCCTGGCCTGGTGCAGGGTGTGGTGTGTCCTCTGGTCAATGGGGTTCTCAGCCTCTTGGACGTCACCCTAGCACATGATGTTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS TCA 72 bp | TACGCAAGCTGCCAGGAGGGTATATACAGTCACCAATaGCCAGGCGACTCCTCCCATAAGAATCTCTCACAG | + |
|
Preference number: 6 (lower is better) Translates to: YASCQEGIYSHQ*PGDSSHKNLSQ Trigger: CTGTGAGAGATTCTTATGGGAGGAGTCGCCTGGTCATTGGTGACTGTATATACCCTCCTGGCAGCTTGCGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CCA 72 bp | AACCACCAGTGTGTTCACTCTGAGATCAAAGCCCAGTaGGATGGTGACATAGAGGCGGTGGAAATCATAGCT | + |
|
Preference number: 6 (lower is better) Translates to: NHQCVHSEIKAQ*DGDIEAVEIIA Trigger: AGCTATGATTTCCACCGCCTCTATGTCACCATCCCACTGGGCTTTGATCTCAGAGTGAACACACTGGTGGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CAA 90 bp | AGGAATGACTCTAGTCAAGATGTCTGTGAGGCTGTCTATAAGGTTTaGCAGGGGACCAAGTCTATTAAGCAAGGAGATACGCAAGCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: RNDSSQDVCEAVYKV*QGTKSIKQGDTQAA Trigger: GGCAGCTTGCGTATCTCCTTGCTTAATAGACTTGGTCCCCTGCAAAACCTTATAGACAGCCTCACAGACATCTTGACTAGAGTCATTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CCA 72 bp | CCGTGTCTGAAAGCATCTCTGAAGTTTCTATCAAGATaGTCTGAAGGATATGTAGACACGACTGGAGTCACT | + |
|
Preference number: 6 (lower is better) Translates to: PCLKASLKFLSR*SEGYVDTTGVT Trigger: AGTGACTCCAGTCGTGTCTACATATCCTTCAGACCATCTTGATAGAAACTTCAGAGATGCTTTCAGACACGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CAA 90 bp | CCAATTTCCAGTAGCTGGGGATTAGTGACTCTTATGTCAAGGATGTaGTTCAAGAGAGGGATTGATGAAATCACTTTTCCAAGCACACCA | + |
|
Preference number: 6 (lower is better) Translates to: PISSSWGLVTLMSRM*FKRGIDEITFPSTP Trigger: TGGTGTGCTTGGAAAAGTGATTTCATCAATCCCTCTCTTGAACAACATCCTTGACATAAGAGTCACTAATCCCCAGCTACTGGAAATTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||
| CDS CAA 72 bp | AGTAGCTGGGGATTAGTGACTCTTATGTCAAGGATGTaGTTCAAGAGAGGGATTGATGAAATCACTTTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: SSWGLVTLMSRM*FKRGIDEITFP Trigger: TGGAAAAGTGATTTCATCAATCCCTCTCTTGAACAACATCCTTGACATAAGAGTCACTAATCCCCAGCTACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028986.3 |
||