Pregenerated sensors for BPIFA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027483Ensembl transcript IDs: ENSMUST00000028985.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGACTGGCCCAGGGGCAATaGCAAGCCTGCCAGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: SRMWAPFCEPWETGQEAGLAQGQ*QACQLC Trigger: GCACAGCTGGCAGGCTTGCCATTGCCCCTGGGCCAG...TCCTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | AGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGAGACAGCTGTGCTGTGCTGTaGGCCAGCAGCCCACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: RMWAPFCEPWETGQEAGDSCAVL*ASSPQR Trigger: CCTCTGTGGGCTGCTGGCCCACAGCACAGCACAGCT...GTCTCCTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | TTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGCCAGGGGCAACAGCTaGCCCTGGTTCAGTGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: FPGCGPLSVSHGRLGKRQARGNS*PWFSGN Trigger: GTTGCCACTGAACCAGGGCCAGCTGTTGCCCCTGGC...CTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR GCA 90 bp | TTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGGGCAATGGCAAGCCTaGCAGCTGTGCTGTGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: FPGCGPLSVSHGRLGKRQGQWQA*QLCCAV Trigger: CACAGCACAGCACAGCTGGCAGGCTTGCCATTGCCC...CTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR TCA 90 bp | GGCAAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCGCCAAAGGCAGACCCTaGGCCAGGGGCAACAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GKRQETEQQEMIQLSQDSAKGRP*ARGNSW Trigger: CCAGCTGTTGCCCCTGGCTCAGGGTCTGCCTTTGGC...GCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR TCA 90 bp | TTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGAGCCCAGAGGGATGGTaGCATAGAGACGATGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: FPGCGPLSVSHGRLGKRQSPEGW*HRDDGH Trigger: ATGGCCATCGTCTCTATGTCACCATCCCTCTGGGCT...CTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | GGAAGACATAATTTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGTGGGCCCTGGTTCAGTaGCAAGGGTGGACCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GRHNFPGCGPLSVSHGRLWALVQ*QGWTLA Trigger: GGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCA...CAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAAATTATGTCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCAAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATCTGGCCCTGGTTCAGTaGCAACGGTGGGCCCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LGKRQETEQQEMIQLSQDLALVQ*QRWALV Trigger: AACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAG...ATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTTGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCAAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATGGCAACAGCTGGCCCTaGTTCAGTGGCAACGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LGKRQETEQQEMIQLSQDGNSWP*FSGNGG Trigger: CCCACCGTTGCCACTGAACCAGGGCCAGCTGTTGCC...ATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTTGCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR GCA 90 bp | GAAGGAAGACATAATTTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACAAGCCTGCCAGCTGTaGTGTGCTGTGGGCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EGRHNFPGCGPLSVSHGRQACQL*CAVGQQ Trigger: CTGCTGGCCCACAGCACAGCACAGCTGGCAGGCTTG...TCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAAATTATGTCTTCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | CAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCCTTCCTTCCGTTCAGTGGCAAGGGTaGACCCTGGCCCAGGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: QETEQQEMIQLSQDSLPSVQWQG*TLAQGQ Trigger: TTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAAC...GGAAGGAAGGCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | GAAGGAAGACATAATTTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGAAGGCTGCCAGGGGAGTaGGTGCAGTCACCAAGAACC | + |
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Preference number: 4 (lower is better) Translates to: EGRHNFPGCGPLSVSHGRRLPGE*VQSPRT Trigger: GGTTCTTGGTGACTGCACCCACTCCCCTGGCAGCCT...TCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAAATTATGTCTTCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR GCA 90 bp | AGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGAGACAGCTTCACAGCCAATTaGAAAAGACTTCCAACTACG | + |
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Preference number: 4 (lower is better) Translates to: RMWAPFCEPWETGQEAGDSFTAN*KRLPTT Trigger: CGTAGTTGGAAGTCTTTTGCAATTGGCTGTGAAGCT...GTCTCCTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR TCA 90 bp | GGAAGACATAATTTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGAAGATCTGTGGGATTTaGAGGCAGTGCTGGGCTTAC | + |
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Preference number: 4 (lower is better) Translates to: GRHNFPGCGPLSVSHGRLKICGI*RQCWAY Trigger: GTAAGCCCAGCACTGCCTTCAAATCCCACAGATCTT...CAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAAATTATGTCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR GCA 90 bp | AAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCCTTTGCCAGGGGAGTGGGTaGAGTCACCAAGAACCAGAT | + |
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Preference number: 4 (lower is better) Translates to: KRQETEQQEMIQLSQDSLCQGSG*SHQEPD Trigger: ATCTGGTTCTTGGTGACTGCACCCACTCCCCTGGCA...AAGGCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR GCA 90 bp | AAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCCTTCCAGAGGACATACCTTaGCCTGGATCAGCTCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: KRQETEQQEMIQLSQDSLPEDIP*PGSAQE Trigger: TTCCTGAGCTGATCCAGGGCAAGGTATGTCCTCTGG...AAGGCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR TCA 90 bp | CAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCCTTCCTTCCTTGTCTAAAAAGCTTTaGACAGGAGTGACTCCATTG | + |
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Preference number: 4 (lower is better) Translates to: QETEQQEMIQLSQDSLPSLSKKL*TGVTPL Trigger: CAATGGAGTCACTCCTGTTCAAAGCTTTTTAGACAA...GGAAGGAAGGCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CCA 90 bp | CAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCCTTCCTTCCACAAACTGTAGTCCATaGATCAGTAATTCAGCAATG | + |
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Preference number: 4 (lower is better) Translates to: QETEQQEMIQLSQDSLPSTNCSP*ISNSAM Trigger: CATTGCTGAATTACTGATCCATGGACTACAGTTTGT...GGAAGGAAGGCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 90 bp | ACCCTGAGCCAGGGGCAACAGCTGGCCCTGGTTCAGTGGCAACGGTaGGCCCTGGTTCAGTGGCAAGGGTGGACCCTGGCCCAGGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: TLSQGQQLALVQWQR*ALVQWQGWTLAQGQ Trigger: TTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAGCTGTTGCCCCTGGCTCAGGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 90 bp | GCCCTGGTTCAGTGGCAACGGTGGGCCCTGGTTCAGTGGCAAGGGTaGACCCTGGCCCAGGGGCAATGGCAAGCCTGCCAGCTGTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: ALVQWQRWALVQWQG*TLAQGQWQACQLCC Trigger: ACAGCACAGCTGGCAGGCTTGCCATTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 90 bp | CAACAGCTGGCCCTGGTTCAGTGGCAACGGTGGGCCCTGGTTCAGTaGCAAGGGTGGACCCTGGCCCAGGGGCAATGGCAAGCCTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: QQLALVQWQRWALVQ*QGWTLAQGQWQACQ Trigger: CTGGCAGGCTTGCCATTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAGCTGTTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 90 bp | CAAAGGCAGACCCTGAGCCAGGGGCAACAGCTGGCCCTGGTTCAGTaGCAACGGTGGGCCCTGGTTCAGTGGCAAGGGTGGACCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: QRQTLSQGQQLALVQ*QRWALVQWQGWTLA Trigger: GGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAGCTGTTGCCCCTGGCTCAGGGTCTGCCTTTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 90 bp | TTCAGTGGCAACGGTGGGCCCTGGTTCAGTGGCAAGGGTGGACCCTaGCCCAGGGGCAATGGCAAGCCTGCCAGCTGTGCTGTGCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: FSGNGGPWFSGKGGP*PRGNGKPASCAVLW Trigger: CCACAGCACAGCACAGCTGGCAGGCTTGCCATTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 90 bp | CCCTGGCCCAGGGGCAATGGCAAGCCTGCCAGCTGTGCTGTGCTGTaGGCCAGCAGCCCACAGAGGACAACGAGGCTCCCAACTAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: PWPRGNGKPASCAVL*ASSPQRTTRLPTRN Trigger: GTTTCTAGTTGGGAGCCTCGTTGTCCTCTGTGGGCTGCTGGCCCACAGCACAGCACAGCTGGCAGGCTTGCCATTGCCCCTGGGCCAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CAA 90 bp | AGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGAGACACCAGAGGACATACCTaGCCCTGGATCAGCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: RMWAPFCEPWETGQEAGDTRGHT*PWISSG Trigger: TCCTGAGCTGATCCAGGGCAAGGTATGTCCTCTGGT...GTCTCCTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CAA 90 bp | AGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACTGGGCAAGAGGCAGGAGACCCGCTGAGAATCCCATaGACCAGAGGACATACCTTG | + |
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Preference number: 5 (lower is better) Translates to: RMWAPFCEPWETGQEAGDPLRIP*TRGHTL Trigger: CAAGGTATGTCCTCTGGTCAATGGGATTCTCAGCGG...GTCTCCTGCCTCTTGCCCAGTCTCCCATGGCTCACAGAAAGGGGCCCACATCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS TCA 90 bp | GCTGAGAGCATCTGTGAATTTTCCAGCAAGAAGATCTGTGGGATTTaGAGGCAGTGCTGGGCTTACAGCCAAAGGCAGACCCTGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: AESICEFSSKKICGI*RQCWAYSQRQTLSQ Trigger: CTGGCTCAGGGTCTGCCTTTGGCTGTAAGCCCAGCACTGCCTTCAAATCCCACAGATCTTCTTGCTGGAAAATTCACAGATGCTCTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CAA 90 bp | GGCAAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATAGCGAAGATCTGTGGGATTaGAAGGCAGTGCTGGGCTTA | + |
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Preference number: 5 (lower is better) Translates to: GKRQETEQQEMIQLSQDSEDLWD*KAVLGL Trigger: TAAGCCCAGCACTGCCTTCAAATCCCACAGATCTTC...GCTATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CAA 90 bp | CTGGGCAAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATACAGGAGTGACTCCATaGAGCAAGCTGATTTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: LGKRQETEQQEMIQLSQDTGVTP*SKLIFR Trigger: CCTGAAAATCAGCTTGCTCAATGGAGTCACTCCTGT...ATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTTGCCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 90 bp | AGACGATGGCCATCAGGACTCTGCACAAGACCAAGTTCTAGCAGCTaGGGATCAGTGATTTTTATGTCGAGGATGTTGTTCAGGAGAGGA | + |
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Preference number: 5 (lower is better) Translates to: RRWPSGLCTRPSSSS*GSVIFMSRMLFRRG Trigger: TCCTCTCCTGAACAACATCCTCGACATAAAAATCACTGATCCGCAGCTGCTAGAACTTGGTCTTGTGCAGAGTCCTGATGGCCATCGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CAA 90 bp | CTGGGCAAGAGGCAGGAGACTGAGCAGCAAGAAATGATTCAGCTCAGCCAAGATACAAGGCCATTAGAATaGCCTCCTCCAGACTTTATA | + |
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Preference number: 5 (lower is better) Translates to: LGKRQETEQQEMIQLSQDTRPLE*PPPDFI Trigger: TATAAAGTCTGGAGGAGGCAATTCTAATGGCCTTGT...ATCTTGGCTGAGCTGAATCATTTCTTGCTGCTCAGTCTCCTGCCTCTTGCCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS-3UTR CAA 90 bp | GAAGGAAGACATAATTTTCCAGGATGTGGGCCCCTTTCTGTGAGCCATGGGAGACAGCTTCACAGCCAATaGCAAAAGACTTCCAACTAC | + |
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Preference number: 5 (lower is better) Translates to: EGRHNFPGCGPLSVSHGRQLHSQ*QKTSNY Trigger: GTAGTTGGAAGTCTTTTGCAATTGGCTGTGAAGCTG...TCTCCCATGGCTCACAGAAAGGGGCCCACATCCTGGAAAATTATGTCTTCCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS TCA 90 bp | GGAAGGACTTTAGTCAATATCCCTGTGAGGTTGTCTAAAAAGCTTTaGACAGGAGTGACTCCATTGAGCAAGCTGATTTTCAGGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: GRTLVNIPVRLSKKL*TGVTPLSKLIFRLP Trigger: TGGCAGCCTGAAAATCAGCTTGCTCAATGGAGTCACTCCTGTTCAAAGCTTTTTAGACAACCTCACAGGGATATTGACTAAAGTCCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 90 bp | TTCACGGCTAAGACTTCTGCAGTAATGTTCAGCTTCACAGCCAATTaGAAAAGACTTCCAACTACGGGCATATTTACGTTGAGTGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: FTAKTSAVMFSFTAN*KRLPTTGIFTLSVK Trigger: CTTGACACTCAACGTAAATATGCCCGTAGTTGGAAGTCTTTTGCAATTGGCTGTGAAGCTGAACATTACTGCAGAAGTCTTAGCCGTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 72 bp | CAAGGGTGGACCCTGGCCCAGGGGCAATGGCAAGCCTaGCAGCTGTGCTGTGCTGTGGGCCAGCAGCCCACA | + |
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Preference number: 6 (lower is better) Translates to: QGWTLAQGQWQA*QLCCAVGQQPT Trigger: TGTGGGCTGCTGGCCCACAGCACAGCACAGCTGGCAGGCTTGCCATTGCCCCTGGGCCAGGGTCCACCCTTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | CAGTGGCAACGGTGGGCCCTGGTTCAGTGGCAAGGGTaGACCCTGGCCCAGGGGCAATGGCAAGCCTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: QWQRWALVQWQG*TLAQGQWQACQ Trigger: CTGGCAGGCTTGCCATTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | AACAGCTGGCCCTGGTTCAGTGGCAACGGTGGGCCCTaGTTCAGTGGCAAGGGTGGACCCTGGCCCAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: NSWPWFSGNGGP*FSGKGGPWPRG Trigger: GCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAGCTGTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | CAGGGGCAACAGCTGGCCCTGGTTCAGTGGCAACGGTaGGCCCTGGTTCAGTGGCAAGGGTGGACCCTGGCC | + |
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Preference number: 6 (lower is better) Translates to: QGQQLALVQWQR*ALVQWQGWTLA Trigger: GGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAGCTGTTGCCCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 72 bp | ACCCTGGCCCAGGGGCAATGGCAAGCCTGCCAGCTGTaGTGTGCTGTGGGCCAGCAGCCCACAGAGGACAAC | + |
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Preference number: 6 (lower is better) Translates to: TLAQGQWQACQL*CAVGQQPTEDN Trigger: GTTGTCCTCTGTGGGCTGCTGGCCCACAGCACAGCACAGCTGGCAGGCTTGCCATTGCCCCTGGGCCAGGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | GCCCTGGTTCAGTGGCAACGGTGGGCCCTGGTTCAGTaGCAAGGGTGGACCCTGGCCCAGGGGCAATGGCAA | + |
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Preference number: 6 (lower is better) Translates to: ALVQWQRWALVQ*QGWTLAQGQWQ Trigger: TTGCCATTGCCCCTGGGCCAGGGTCCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | ACCCTGAGCCAGGGGCAACAGCTGGCCCTGGTTCAGTaGCAACGGTGGGCCCTGGTTCAGTGGCAAGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: TLSQGQQLALVQ*QRWALVQWQGW Trigger: CCACCCTTGCCACTGAACCAGGGCCCACCGTTGCCACTGAACCAGGGCCAGCTGTTGCCCCTGGCTCAGGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | AGGGGCAATGGCAAGCCTGCCAGCTGTGCTGTGCTGTaGGCCAGCAGCCCACAGAGGACAACGAGGCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: RGNGKPASCAVL*ASSPQRTTRLP Trigger: TGGGAGCCTCGTTGTCCTCTGTGGGCTGCTGGCCCACAGCACAGCACAGCTGGCAGGCTTGCCATTGCCCCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CAA 90 bp | GTGACATCCAAACCGCTGAGAATCCCATTGACCAGAGGACATACCTaGCCCTGGATCAGCTCAGGAAGGACTTTAGTCAATATCCCTGTG | + |
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Preference number: 6 (lower is better) Translates to: VTSKPLRIPLTRGHT*PWISSGRTLVNIPV Trigger: CACAGGGATATTGACTAAAGTCCTTCCTGAGCTGATCCAGGGCAAGGTATGTCCTCTGGTCAATGGGATTCTCAGCGGTTTGGATGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS TCA 72 bp | ATCTGTGAATTTTCCAGCAAGAAGATCTGTGGGATTTaGAGGCAGTGCTGGGCTTACAGCCAAAGGCAGACC | + |
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Preference number: 6 (lower is better) Translates to: ICEFSSKKICGI*RQCWAYSQRQT Trigger: GGTCTGCCTTTGGCTGTAAGCCCAGCACTGCCTTCAAATCCCACAGATCTTCTTGCTGGAAAATTCACAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CCA 72 bp | CTGAGAATCCCATTGACCAGAGGACATACCTTGCCCTaGATCAGCTCAGGAAGGACTTTAGTCAATATCCCT | + |
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Preference number: 6 (lower is better) Translates to: LRIPLTRGHTLP*ISSGRTLVNIP Trigger: AGGGATATTGACTAAAGTCCTTCCTGAGCTGATCCAGGGCAAGGTATGTCCTCTGGTCAATGGGATTCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS CAA 72 bp | AAACCGCTGAGAATCCCATTGACCAGAGGACATACCTaGCCCTGGATCAGCTCAGGAAGGACTTTAGTCAAT | + |
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Preference number: 6 (lower is better) Translates to: KPLRIPLTRGHT*PWISSGRTLVN Trigger: ATTGACTAAAGTCCTTCCTGAGCTGATCCAGGGCAAGGTATGTCCTCTGGTCAATGGGATTCTCAGCGGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 72 bp | CCATCAGGACTCTGCACAAGACCAAGTTCTAGCAGCTaGGGATCAGTGATTTTTATGTCGAGGATGTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: PSGLCTRPSSSS*GSVIFMSRMLF Trigger: GAACAACATCCTCGACATAAAAATCACTGATCCGCAGCTGCTAGAACTTGGTCTTGTGCAGAGTCCTGATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 72 bp | AACTGTAGTCCATGGATCAGTAATTCAGCAATGTTGTaGACCAGGGTGACATCCAAACCGCTGAGAATCCCA | + |
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Preference number: 6 (lower is better) Translates to: NCSPWISNSAML*TRVTSKPLRIP Trigger: TGGGATTCTCAGCGGTTTGGATGTCACCCTGGTGCACAACATTGCTGAATTACTGATCCATGGACTACAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS TCA 72 bp | TCTGCACAAGACCAAGTTCTAGCAGCTGCGGATCAGTaGTTTTTATGTCGAGGATGTTGTTCAGGAGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: SAQDQVLAAADQ*FLCRGCCSGEE Trigger: TTCCTCTCCTGAACAACATCCTCGACATAAAAATCACTGATCCGCAGCTGCTAGAACTTGGTCTTGTGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS GCA 72 bp | AAGACTTCTGCAGTAATGTTCAGCTTCACAGCCAATTaGAAAAGACTTCCAACTACGGGCATATTTACGTTG | + |
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Preference number: 6 (lower is better) Translates to: KTSAVMFSFTAN*KRLPTTGIFTL Trigger: CAACGTAAATATGCCCGTAGTTGGAAGTCTTTTGCAATTGGCTGTGAAGCTGAACATTACTGCAGAAGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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| CDS TCA 72 bp | TTAGTCAATATCCCTGTGAGGTTGTCTAAAAAGCTTTaGACAGGAGTGACTCCATTGAGCAAGCTGATTTTC | + |
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Preference number: 6 (lower is better) Translates to: LVNIPVRLSKKL*TGVTPLSKLIF Trigger: GAAAATCAGCTTGCTCAATGGAGTCACTCCTGTTCAAAGCTTTTTAGACAACCTCACAGGGATATTGACTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028985.8 |
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