Pregenerated sensors for BPHL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038286Ensembl transcript IDs: ENSMUST00000040656.8, ENSMUST00000222658.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGACCAATGGGTCCTTCTCCCCATGCACAATGAGGGTAGGGCACTaGACCAGGGGCAGCAAGTGCCGGCAGATGTTACCCTCTGGCAGT | + |
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Preference number: 1 (lower is better) Translates to: GTNGSFSPCTMRVGH*TRGSKCRQMLPSGS Trigger: ACTGCCAGAGGGTAACATCTGCCGGCACTTGCTGCCCCTGGTCCAGTGCCCTACCCTCATTGTGCATGGGGAGAAGGACCCATTGGTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR TCA 90 bp | GCGCAGTTATGCCGCCATCACTCCAGCCCAGGAGGGAGACCTGCTTaGACTGTAGAGCCCAACATCCCAGGAAGCAGGAGGATCGCATGT | + |
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Preference number: 1 (lower is better) Translates to: AQLCRHHSSPGGRPA*TVEPNIPGSRRIAC Trigger: ACATGCGATCCTCCTGCTTCCTGGGATGTTGGGCTCTACAGTTCAAGCAGGTCTCCCTCCTGGGCTGGAGTGATGGCGGCATAACTGCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 90 bp | ATGAGCGCAGTTATGCCGCCATCACTCCAGCCCAGGAGGGAGACCTaGTTGAACTGTAGAGCCCAACATCCCAGGAAGCAGGAGGATCGC | + |
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Preference number: 1 (lower is better) Translates to: MSAVMPPSLQPRRET*LNCRAQHPRKQEDR Trigger: GCGATCCTCCTGCTTCCTGGGATGTTGGGCTCTACAGTTCAAGCAGGTCTCCCTCCTGGGCTGGAGTGATGGCGGCATAACTGCGCTCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 90 bp | CTCCCACGCGCTGGTAATGCAGGTGAACGCCATTCACAGCCACCTTaGCAGAAGTTACTGCAGTGCAGTTCTGCGGGATCTGGACGTGGG | + |
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Preference number: 1 (lower is better) Translates to: LPRAGNAGERHSQPP*QKLLQCSSAGSGRG Trigger: CCCACGTCCAGATCCCGCAGAACTGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGCATTACCAGCGCGTGGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR TCA 90 bp | AGATCACCATCTTGCGGATATAAGATGGGTACTTTGCAGCAGCGATaGGCGCAGTTATGCCGCCATCACTCCAGCCCAGGAGGGAGACCT | + |
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Preference number: 1 (lower is better) Translates to: RSPSCGYKMGTLQQR*AQLCRHHSSPGGRP Trigger: AGGTCTCCCTCCTGGGCTGGAGTGATGGCGGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 90 bp | GTAATGCAGGTGAACGCCATTCACAGCCACCTTGGCAGAAGTTACTaGAGTGCAGTTCTGCGGGATCTGGACGTGGGGTTTGAGCAAGGA | + |
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Preference number: 1 (lower is better) Translates to: VMQVNAIHSHLGRSY*SAVLRDLDVGFEQG Trigger: TCCTTGCTCAAACCCCACGTCCAGATCCCGCAGAACTGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGCATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 90 bp | ATTTGCTCCCCAGATCACCATCTTGCGGATATAAGATGGGTACTTTaGAGCAGCGATGAGCGCAGTTATGCCGCCATCACTCCAGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: ICSPDHHLADIRWVL*SSDERSYAAITPAQ Trigger: CTGGGCTGGAGTGATGGCGGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGGGGAGCAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 90 bp | GACATAGGCATTTGCTCCCCAGATCACCATCTTGCGGATATAAGATaGGTACTTTGCAGCAGCGATGAGCGCAGTTATGCCGCCATCACT | + |
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Preference number: 1 (lower is better) Translates to: DIGICSPDHHLADIR*VLCSSDERSYAAIT Trigger: AGTGATGGCGGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGGGGAGCAAATGCCTATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 90 bp | GATACCCTGGTAAATCCTGCTGTCTTCCTCGGTGACATAGGCATTTaGTCCCCAGATCACCATCTTGCGGATATAAGATGGGTACTTTGC | + |
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Preference number: 1 (lower is better) Translates to: DTLVNPAVFLGDIGI*SPDHHLADIRWVLC Trigger: GCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGGGGAGCAAATGCCTATGTCACCGAGGAAGACAGCAGGATTTACCAGGGTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR-3UTR CCA 90 bp | TGGACCAGGGGCAGCAAGTGCCGGCAGATGTTACCCTCTGGCAGTTGTTTAAACTGCGGGATCTGGACGTaGGGTTTGAGCAAGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: WTRGSKCRQMLPSGSCLNCGIWT*GLSKEG Trigger: CCCTTCCTTGCTCAAACCCCACGTCCAGATCCCGCA...GTTTAAACAACTGCCAGAGGGTAACATCTGCCGGCACTTGCTGCCCCTGGTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR-3UTR GCA 90 bp | GTGCCGGCAGATGTTACCCTCTGGCAGTTGTTTAAACTGGCTTATGCCATCCACACTGCAGTGCAGTTCTaGGGGATCTGGACGTGGGGT | + |
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Preference number: 2 (lower is better) Translates to: VPADVTLWQLFKLAYAIHTAVQF*GIWTWG Trigger: ACCCCACGTCCAGATCCCGCAGAACTGCACTGCAGT...GTGGATGGCATAAGCCAGTTTAAACAACTGCCAGAGGGTAACATCTGCCGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR-3UTR TCA 90 bp | GAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGCCAGGTAACAGGCAATaGCATGATCTTTTAACACAG | + |
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Preference number: 2 (lower is better) Translates to: ESHCREDRKPGRPVCEPRPGNRQ*HDLLTQ Trigger: CTGTGTTAAAAGATCATGTCATTGCCTGTTACCTGG...CCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| 3UTR-3UTR GCA 90 bp | GTGCCGGCAGATGTTACCCTCTGGCAGTTGTTTAAACTGGCTTATGCCATCCACCAGAAGTTACTGCAGTaGAGTTCTGCGGGATCTGGA | + |
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Preference number: 2 (lower is better) Translates to: VPADVTLWQLFKLAYAIHQKLLQ*SSAGSG Trigger: TCCAGATCCCGCAGAACTGCACTGCAGTAACTTCTG...GTGGATGGCATAAGCCAGTTTAAACAACTGCCAGAGGGTAACATCTGCCGGCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR-3UTR CCA 90 bp | TGGACCAGGGGCAGCAAGTGCCGGCAGATGTTACCCTCTGGCAGTTGTTTAAACCTTGCGGATATAAGATaGGTACTTTGCAGCAGCGAT | + |
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Preference number: 2 (lower is better) Translates to: WTRGSKCRQMLPSGSCLNLADIR*VLCSSD Trigger: ATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAG...GTTTAAACAACTGCCAGAGGGTAACATCTGCCGGCACTTGCTGCCCCTGGTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR-3UTR GCA 90 bp | CGGCAGATGTTACCCTCTGGCAGTTGTTTAAACTGGCTTATGCCATCCACCCAGCCCAGATCACCATCTTaGGGATATAAGATGGGTACT | + |
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Preference number: 2 (lower is better) Translates to: RQMLPSGSCLNWLMPSTQPRSPS*GYKMGT Trigger: AGTACCCATCTTATATCCGCAAGATGGTGATCTGGG...CTGGGTGGATGGCATAAGCCAGTTTAAACAACTGCCAGAGGGTAACATCTGCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 72 bp | GGGTCCTTCTCCCCATGCACAATGAGGGTAGGGCACTaGACCAGGGGCAGCAAGTGCCGGCAGATGTTACCC | + |
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Preference number: 3 (lower is better) Translates to: GSFSPCTMRVGH*TRGSKCRQMLP Trigger: GGGTAACATCTGCCGGCACTTGCTGCCCCTGGTCCAGTGCCCTACCCTCATTGTGCATGGGGAGAAGGACCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 72 bp | GTTATGCCGCCATCACTCCAGCCCAGGAGGGAGACCTaGTTGAACTGTAGAGCCCAACATCCCAGGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: VMPPSLQPRRET*LNCRAQHPRKQ Trigger: CTGCTTCCTGGGATGTTGGGCTCTACAGTTCAAGCAGGTCTCCCTCCTGGGCTGGAGTGATGGCGGCATAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 72 bp | CTGGAGAAGGAAGTCAGCATGAAAGCGGGGGACCAATaGGTCCTTCTCCCCATGCACAATGAGGGTAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: LEKEVSMKAGDQ*VLLPMHNEGRA Trigger: TGCCCTACCCTCATTGTGCATGGGGAGAAGGACCCATTGGTCCCCCGCTTTCATGCTGACTTCCTTCTCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR TCA 72 bp | TCTTGCGGATATAAGATGGGTACTTTGCAGCAGCGATaGGCGCAGTTATGCCGCCATCACTCCAGCCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: SCGYKMGTLQQR*AQLCRHHSSPG Trigger: TCCTGGGCTGGAGTGATGGCGGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 72 bp | GCTGGTAATGCAGGTGAACGCCATTCACAGCCACCTTaGCAGAAGTTACTGCAGTGCAGTTCTGCGGGATCT | + |
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Preference number: 3 (lower is better) Translates to: AGNAGERHSQPP*QKLLQCSSAGS Trigger: AGATCCCGCAGAACTGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGCATTACCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR TCA 72 bp | CTCGGATACCCTGGTAAATCCTGCTGTCTTCCTCGGTaGCATAGGCATTTGCTCCCCAGATCACCATCTTGC | + |
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Preference number: 3 (lower is better) Translates to: LGYPGKSCCLPR*HRHLLPRSPSC Trigger: GCAAGATGGTGATCTGGGGAGCAAATGCCTATGTCACCGAGGAAGACAGCAGGATTTACCAGGGTATCCGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 72 bp | CCAGATCACCATCTTGCGGATATAAGATGGGTACTTTaGAGCAGCGATGAGCGCAGTTATGCCGCCATCACT | + |
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Preference number: 3 (lower is better) Translates to: PDHHLADIRWVL*SSDERSYAAIT Trigger: AGTGATGGCGGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR-3UTR CAA 90 bp | CATTTGCTCCCCAGATCACCATCTTGCGGATATAAGATGGGTACTTTGCAGCAGCCATTCACAGCCACCTaGGCAGAAGTTACTGCAGTG | + |
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Preference number: 3 (lower is better) Translates to: HLLPRSPSCGYKMGTLQQPFTAT*AEVTAV Trigger: CACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGG...CTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGGGGAGCAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 72 bp | ATTTGCTCCCCAGATCACCATCTTGCGGATATAAGATaGGTACTTTGCAGCAGCGATGAGCGCAGTTATGCC | + |
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Preference number: 3 (lower is better) Translates to: ICSPDHHLADIR*VLCSSDERSYA Trigger: GGCATAACTGCGCTCATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAGATGGTGATCTGGGGAGCAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR GCA 72 bp | GTAAATCCTGCTGTCTTCCTCGGTGACATAGGCATTTaGTCCCCAGATCACCATCTTGCGGATATAAGATGG | + |
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Preference number: 3 (lower is better) Translates to: VNPAVFLGDIGI*SPDHHLADIRW Trigger: CCATCTTATATCCGCAAGATGGTGATCTGGGGAGCAAATGCCTATGTCACCGAGGAAGACAGCAGGATTTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222658.2 |
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| 3UTR CCA 72 bp | TCTGTGAGCCGAGGCCAAAAGCAAGGGAAGGCATTTTaGAGCATCCAGGTAACAGGCAATGACATGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: SVSRGQKQGKAF*SIQVTGNDMIF Trigger: AAAGATCATGTCATTGCCTGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCCTCGGCTCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CCA 90 bp | GAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGATGAGGGTAGGGCACTaGACCAGGGGCAGCAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: ESHCREDRKPGRPVCEPRMRVGH*TRGSKC Trigger: GCACTTGCTGCCCCTGGTCCAGTGCCCTACCCTCAT...CCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | ATAGAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGGGGTCCTTCTCCCCATaGACAATGAGGGTAGGGCAC | + |
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Preference number: 4 (lower is better) Translates to: IESHCREDRKPGRPVCEPGSFSP*TMRVGH Trigger: GTGCCCTACCCTCATTGTGCATGGGGAGAAGGACCC...CGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTCTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | GAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGCGTGACCCTTTCACATaGTGGAGAAGGAAGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: ESHCREDRKPGRPVCEPRRDPFT*WRRKSA Trigger: TGCTGACTTCCTTCTCCAGCATGTGAAAGGGTCACG...CCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR TCA 90 bp | TCTGTGAGCCGAGGCCAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAACTTTGCAGCAGCGATaGGCGCAGTTATGCCGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SVSRGQKQGKAFWSIQVTTLQQR*AQLCRH Trigger: ATGGCGGCATAACTGCGCTCATCGCTGCTGCAAAGT...TGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCCTCGGCTCACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | GAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGGGTGACATAGGCATTTaGTCCCCAGATCACCATCTT | + |
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Preference number: 4 (lower is better) Translates to: ESHCREDRKPGRPVCEPRGDIGI*SPDHHL Trigger: AAGATGGTGATCTGGGGAGCAAATGCCTATGTCACC...CCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CCA 90 bp | GAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGGGCAGTTGTTTAAACTaGCTTATGCCATCCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: ESHCREDRKPGRPVCEPRGSCLN*LMPSTQ Trigger: CTGGGTGGATGGCATAAGCCAGTTTAAACAACTGCC...CCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CCA 90 bp | GGCCAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAGGCAATGACATGAAAGCGGGGGACCAATaGGTCCTTCTCCCCATGCAC | + |
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Preference number: 4 (lower is better) Translates to: GQKQGKAFWSIQVTGNDMKAGDQ*VLLPMH Trigger: GTGCATGGGGAGAAGGACCCATTGGTCCCCCGCTTT...CATGTCATTGCCTGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR TCA 90 bp | TCTGTGAGCCGAGGCCAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAGGAGGGAGACCTGCTTaGACTGTAGAGCCTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: SVSRGQKQGKAFWSIQVTGGRPA*TVEPSS Trigger: TGATGAAGGCTCTACAGTTCAAGCAGGTCTCCCTCC...TGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCCTCGGCTCACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | TCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGCCATTCCAGGGGTTTCCTTaGCTTCTCACTCCATTTAGA | + |
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Preference number: 4 (lower is better) Translates to: SHCREDRKPGRPVCEPRPFQGFP*LLTPFR Trigger: TCTAAATGGAGTGAGAAGGCAAGGAAACCCCTGGAA...TGGCCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | TCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGCCACGTAAGTGTAAGTTGTaGTTGCCTTCTGGCATCAGA | + |
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Preference number: 4 (lower is better) Translates to: SHCREDRKPGRPVCEPRPRKCKL*LPSGIR Trigger: TCTGATGCCAGAAGGCAAGCACAACTTACACTTACG...TGGCCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CCA 90 bp | TCTGTGAGCCGAGGCCAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACACTCGATCTGGGGGTCTaGAATATCCATATCCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: SVSRGQKQGKAFWSIQVTLDLGV*NIHILE Trigger: CTCGAGGATATGGATATTCCAGACCCCCAGATCGAG...TGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCCTCGGCTCACAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | CGAGGCCAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAGGCAATGACCCCAGATCACCATCTTaGGGATATAAGATGGGTACT | + |
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Preference number: 4 (lower is better) Translates to: RGQKQGKAFWSIQVTGNDPRSPS*GYKMGT Trigger: AGTACCCATCTTATATCCGCAAGATGGTGATCTGGG...GTCATTGCCTGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCCTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CCA 90 bp | TCTGTGAGCCGAGGCCAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACACTTGCGGATATAAGATaGGTACTTTGCAGCAGCGAT | + |
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Preference number: 4 (lower is better) Translates to: SVSRGQKQGKAFWSIQVTLADIR*VLCSSD Trigger: ATCGCTGCTGCAAAGTACCCATCTTATATCCGCAAG...TGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTGGCCTCGGCTCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR GCA 90 bp | CAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAGGCAATGACATGATCAGTGTAAGTTGTGCTTaGCTTCTGGCATCAGATGCA | + |
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Preference number: 4 (lower is better) Translates to: QKQGKAFWSIQVTGNDMISVSCA*LLASDA Trigger: TGCATCTGATGCCAGAAGGCAAGCACAACTTACACT...GATCATGTCATTGCCTGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CCA 90 bp | CAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAGGCAATGACATGATCTGGAAAATCTCGATCTaGGGGTCTGGAATATCCATA | + |
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Preference number: 4 (lower is better) Translates to: QKQGKAFWSIQVTGNDMIWKISI*GSGISI Trigger: TATGGATATTCCAGACCCCCAGATCGAGATTTTCCA...GATCATGTCATTGCCTGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS GCA 90 bp | GCAGGTGAACGCCATTCACAGCCACCTTGGCAGAAGTTACTGCAGTaGCGAAGGTGGCTACGGGTTCGGCCTGGGGTACGCAGATCCGGG | + |
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Preference number: 5 (lower is better) Translates to: AGERHSQPPWQKLLQ*RRWLRVRPGVRRSG Trigger: CCCGGATCTGCGTACCCCAGGCCGAACCCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CCA 90 bp | CGCCATTCACAGCCACCTTGGCAGAAGTTACTGCAGTGCCGAAGGTaGCTACGGGTTCGGCCTGGGGTACGCAGATCCGGGATTTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: RHSQPPWQKLLQCRR*LRVRPGVRRSGISG Trigger: CCCTGAAATCCCGGATCTGCGTACCCCAGGCCGAACCCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CCA 90 bp | CTCCCACGCGCTGGTAATGCAGGTGAACGCCATTCACAGCCACCTTaGCAGAAGTTACTGCAGTGCCGAAGGTGGCTACGGGTTCGGCCT | + |
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Preference number: 5 (lower is better) Translates to: LPRAGNAGERHSQPP*QKLLQCRRWLRVRP Trigger: AGGCCGAACCCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGCATTACCAGCGCGTGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS GCA 90 bp | GTAATGCAGGTGAACGCCATTCACAGCCACCTTGGCAGAAGTTACTaGAGTGCCGAAGGTGGCTACGGGTTCGGCCTGGGGTACGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: VMQVNAIHSHLGRSY*SAEGGYGFGLGYAD Trigger: ATCTGCGTACCCCAGGCCGAACCCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGCATTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CAA 90 bp | TCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGCCACCATTCACAGCCACCTaGGCAGAAGTTACTGCAGTG | + |
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Preference number: 5 (lower is better) Translates to: SHCREDRKPGRPVCEPRPPFTAT*AEVTAV Trigger: CACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGG...TGGCCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS TCA 90 bp | AGATGCAACCGTGACCCTTTCACATGCTGGAGAAGGAAGTCAGCATaGAAGCGGGGGACCAATGGGTCCTTCTCCCCATGCACAATGAGG | + |
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Preference number: 5 (lower is better) Translates to: RCNRDPFTCWRRKSA*KRGTNGSFSPCTMR Trigger: CCTCATTGTGCATGGGGAGAAGGACCCATTGGTCCCCCGCTTTCATGCTGACTTCCTTCTCCAGCATGTGAAAGGGTCACGGTTGCATCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CAA 90 bp | GAGTCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGAAGTGTAAGTTGTGCTaGCCTTCTGGCATCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: ESHCREDRKPGRPVCEPRKCKLC*PSGIRC Trigger: GCATCTGATGCCAGAAGGCAAGCACAACTTACACTT...CCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CAA 90 bp | TCACATTGCAGGGAAGATAGAAAGCCTGGCAGGCCTGTCTGTGAGCCGAGGCCATCTTCTACCAACCTGTaGAATTCGTCTGCAAAGCGT | + |
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Preference number: 5 (lower is better) Translates to: SHCREDRKPGRPVCEPRPSSTNL*NSSAKR Trigger: ACGCTTTGCAGACGAATTCAACAGGTTGGTAGAAGA...TGGCCTCGGCTCACAGACAGGCCTGCCAGGCTTTCTATCTTCCCTGCAATGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS GCA 90 bp | TCTACCAACCTGTTGAATTCGTCTGCAAAGCGTAAGTGTAAGTTGTaGTTGCCTTCTGGCATCAGATGCAACCGTGACCCTTTCACATGC | + |
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Preference number: 5 (lower is better) Translates to: STNLLNSSAKRKCKL*LPSGIRCNRDPFTC Trigger: GCATGTGAAAGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGACGAATTCAACAGGTTGGTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS-3UTR CAA 90 bp | CAAAAGCAAGGGAAGGCATTTTGGAGCATCCAGGTAACAGGCAATGACATGATCGTTACCCTCTGGCAGTaGTTTAAACTGGCTTATGCC | + |
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Preference number: 5 (lower is better) Translates to: QKQGKAFWSIQVTGNDMIVTLWQ*FKLAYA Trigger: GGCATAAGCCAGTTTAAACAACTGCCAGAGGGTAAC...GATCATGTCATTGCCTGTTACCTGGATGCTCCAAAATGCCTTCCCTTGCTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CCA 72 bp | CAGCCACCTTGGCAGAAGTTACTGCAGTGCCGAAGGTaGCTACGGGTTCGGCCTGGGGTACGCAGATCCGGG | + |
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Preference number: 6 (lower is better) Translates to: QPPWQKLLQCRR*LRVRPGVRRSG Trigger: CCCGGATCTGCGTACCCCAGGCCGAACCCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CCA 72 bp | GCTGGTAATGCAGGTGAACGCCATTCACAGCCACCTTaGCAGAAGTTACTGCAGTGCCGAAGGTGGCTACGG | + |
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Preference number: 6 (lower is better) Translates to: AGNAGERHSQPP*QKLLQCRRWLR Trigger: CCGTAGCCACCTTCGGCACTGCAGTAACTTCTGCCAAGGTGGCTGTGAATGGCGTTCACCTGCATTACCAGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS GCA 72 bp | GTTATGCCGCCATCACTCCAGCCCAGGAGGGAGACCTaGTTGAACTGTAGAGCCTTCATCAAGTCAACAGCA | + |
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Preference number: 6 (lower is better) Translates to: VMPPSLQPRRET*LNCRAFIKSTA Trigger: TGCTGTTGACTTGATGAAGGCTCTACAGTTCAAGCAGGTCTCCCTCCTGGGCTGGAGTGATGGCGGCATAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS GCA 72 bp | CGTAAGTGTAAGTTGTGCTTGCCTTCTGGCATCAGATaGAACCGTGACCCTTTCACATGCTGGAGAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RKCKLCLPSGIR*NRDPFTCWRRK Trigger: CTTCCTTCTCCAGCATGTGAAAGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CAA 90 bp | ACCAACCTGTTGAATTCGTCTGCAAAGCGTAAGTGTAAGTTGTGCTaGCCTTCTGGCATCAGATGCAACCGTGACCCTTTCACATGCTGG | + |
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Preference number: 6 (lower is better) Translates to: TNLLNSSAKRKCKLC*PSGIRCNRDPFTCW Trigger: CCAGCATGTGAAAGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGACGAATTCAACAGGTTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS GCA 72 bp | CTGTTGAATTCGTCTGCAAAGCGTAAGTGTAAGTTGTaGTTGCCTTCTGGCATCAGATGCAACCGTGACCCT | + |
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Preference number: 6 (lower is better) Translates to: LLNSSAKRKCKL*LPSGIRCNRDP Trigger: AGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGACGAATTCAACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CAA 90 bp | TCTTCTACCAACCTGTTGAATTCGTCTGCAAAGCGTAAGTGTAAGTaGTGCTTGCCTTCTGGCATCAGATGCAACCGTGACCCTTTCACA | + |
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Preference number: 6 (lower is better) Translates to: SSTNLLNSSAKRKCK*CLPSGIRCNRDPFT Trigger: TGTGAAAGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGACGAATTCAACAGGTTGGTAGAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CAA 72 bp | TTGAATTCGTCTGCAAAGCGTAAGTGTAAGTTGTGCTaGCCTTCTGGCATCAGATGCAACCGTGACCCTTTC | + |
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Preference number: 6 (lower is better) Translates to: LNSSAKRKCKLC*PSGIRCNRDPF Trigger: GAAAGGGTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGACGAATTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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| CDS CAA 72 bp | AACCTGTTGAATTCGTCTGCAAAGCGTAAGTGTAAGTaGTGCTTGCCTTCTGGCATCAGATGCAACCGTGAC | + |
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Preference number: 6 (lower is better) Translates to: NLLNSSAKRKCK*CLPSGIRCNRD Trigger: GTCACGGTTGCATCTGATGCCAGAAGGCAAGCACAACTTACACTTACGCTTTGCAGACGAATTCAACAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040656.8 |
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