Pregenerated sensors for BORCS8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002345Ensembl transcript IDs: ENSMUST00000002418.15, ENSMUST00000110139.2, ENSMUST00000123760.8, ENSMUST00000129668.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGCCACAGATGCCAAAGACTACCAGGACAGCTCACTGGTTAGGATaGGGTGAGGGCAGGTGGCCAGGGCTACCTGTGGCCTTGGGCACT | + |
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Preference number: 1 (lower is better) Translates to: VPQMPKTTRTAHWLG*GEGRWPGLPVALGT Trigger: AGTGCCCAAGGCCACAGGTAGCCCTGGCCACCTGCCCTCACCCCATCCTAACCAGTGAGCTGTCCTGGTAGTCTTTGGCATCTGTGGCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR TCA 90 bp | TCCTGGGGATGCCAGGCAGCTGCTCTTTATCACCCACACCTGCTCTaGACTGTGTCTCTCAGTCACTGTCCCTGTGAGCCTGGCACCACT | + |
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Preference number: 1 (lower is better) Translates to: SWGCQAAALYHPHLL*TVSLSHCPCEPGTT Trigger: AGTGGTGCCAGGCTCACAGGGACAGTGACTGAGAGACACAGTTCAGAGCAGGTGTGGGTGATAAAGAGCAGCTGCCTGGCATCCCCAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR TCA 90 bp | CACAAAAGGGGCCAGCAGGTGCTTTCCACTGCACTGGGCCTTAGCTaGAAGTCTCTAAGCCGGAGAAACCATGACACAGGGTGGAGAGCC | + |
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Preference number: 1 (lower is better) Translates to: HKRGQQVLSTALGLS*KSLSRRNHDTGWRA Trigger: GGCTCTCCACCCTGTGTCATGGTTTCTCCGGCTTAGAGACTTTCAGCTAAGGCCCAGTGCAGTGGAAAGCACCTGCTGGCCCCTTTTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR TCA 90 bp | AGCCTGGCACCACTGTGTTCCTCACAGCAGCTGAGTTACAGAAAATaGGTGCCACAGATGCCAAAGACTACCAGGACAGCTCACTGGTTA | + |
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Preference number: 1 (lower is better) Translates to: SLAPLCSSQQLSYRK*VPQMPKTTRTAHWL Trigger: TAACCAGTGAGCTGTCCTGGTAGTCTTTGGCATCTGTGGCACTCATTTTCTGTAACTCAGCTGCTGTGAGGAACACAGTGGTGCCAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR-3UTR TCA 90 bp | ACCCACACCTGCTCTGAACTGTGTCTCTCAGTCACTGTCCCTGTGAGCCTGGCACTGGTTAGGATGGGGTaGGGGCAGGTGGCCAGGGCT | + |
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Preference number: 2 (lower is better) Translates to: THTCSELCLSVTVPVSLALVRMG*GQVARA Trigger: AGCCCTGGCCACCTGCCCTCACCCCATCCTAACCAG...TGCCAGGCTCACAGGGACAGTGACTGAGAGACACAGTTCAGAGCAGGTGTGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAGCCCAGCTCCCACAAGCCTCGACCTCCCACTAAATCACTCCTCTAGGGGCCTCTGGTCACCATCCTaGGGATGCCAGGCAGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: ESPAPTSLDLPLNHSSRGLWSPS*GCQAAA Trigger: AGCAGCTGCCTGGCATCCCCAGGATGGTGACCAGAG...GCCCCTAGAGGAGTGATTTAGTGGGAGGTCGAGGCTTGTGGGAGCTGGGCTCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR-3UTR CCA 90 bp | ATGTGGTCCCGGATACTGATGGCCTGTTTGAGCAGGCCTTCCACACTACGGAAGTGTGGTATCCAGGCCTaGGTGGGGAAGCAGGTAGCC | + |
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Preference number: 2 (lower is better) Translates to: MWSRILMACLSRPSTLRKCGIQA*VGKQVA Trigger: GGCTACCTGCTTCCCCACCCAGGCCTGGATACCACA...CTTCCGTAGTGTGGAAGGCCTGCTCAAACAGGCCATCAGTATCCGGGACCACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129668.8 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTTCAGTTCTTGGTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAATGTGGTATCCAGGCCTaGGTGGGGAAGCAGGTAGCC | + |
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Preference number: 2 (lower is better) Translates to: RSSVLGESSMWYPGLGGECGIQA*VGKQVA Trigger: GGCTACCTGCTTCCCCACCCAGGCCTGGATACCACA...TTCCCCACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| 3UTR-3UTR TCA 90 bp | CACAGGGTGGAGAGCCCAGCTCCCACAAGCCTCGACCTCCCACTAAATCACTCCCTGAGTTACAGAAAATaGGTGCCACAGATGCCAAAG | + |
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Preference number: 2 (lower is better) Translates to: HRVESPAPTSLDLPLNHSLSYRK*VPQMPK Trigger: CTTTGGCATCTGTGGCACTCATTTTCTGTAACTCAG...GGAGTGATTTAGTGGGAGGTCGAGGCTTGTGGGAGCTGGGCTCTCCACCCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR-3UTR CCA 90 bp | ACCAAGGTAGACAATTATGGCAGAATCAGTAGGCAGCAGGCACTGGCCACTTGCGTAGGCAGCAGGCACTaGCCACTTGCTAGGTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: TKVDNYGRISRQQALATCVGSRH*PLARSS Trigger: TGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTAC...GCAAGTGGCCAGTGCCTGCTGCCTACTGATTCTGCCATAATTGTCTACCTTGGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| 3UTR-3UTR CCA 90 bp | ATTATGGCAGAATCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTGGTGAGTCTTCAATGTaGTATCCAGGCCTGGGTGGG | + |
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Preference number: 2 (lower is better) Translates to: IMAESVGSRHWPLARSSVGESSM*YPGLGG Trigger: CCCACCCAGGCCTGGATACCACATTGAAGACTCACC...AACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGATTCTGCCATAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| 3UTR-3UTR CCA 90 bp | AATGCTCCTGGAAGAGTGACCCTAATTTATGACCAAGGTAGACAATTATGGCAGGAAAGAGACGGTTTCTaGACAGTCAGTGTATTCAGT | + |
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Preference number: 2 (lower is better) Translates to: NAPGRVTLIYDQGRQLWQERDGF*TVSVFS Trigger: ACTGAATACACTGACTGTCCAGAAACCGTCTCTTTC...CTGCCATAATTGTCTACCTTGGTCATAAATTAGGGTCACTCTTCCAGGAGCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110139.2 |
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| 3UTR CCA 72 bp | GTGCCAGTCTCAGGGCCCCTGCTCTGGTCACCATCCTaGGGATGCCAGGCAGCTGCTCTTTATCACCCACAC | + |
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Preference number: 3 (lower is better) Translates to: VPVSGPLLWSPS*GCQAAALYHPH Trigger: GTGTGGGTGATAAAGAGCAGCTGCCTGGCATCCCCAGGATGGTGACCAGAGCAGGGGCCCTGAGACTGGCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR GCA 72 bp | GACCTCCCACTAAATCACTCCTCTAGGGGCCCAGAGTaGCAGTCTCAGGGCCCCTGCTCTGGTCACCATCCT | + |
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Preference number: 3 (lower is better) Translates to: DLPLNHSSRGPE*QSQGPCSGHHP Trigger: AGGATGGTGACCAGAGCAGGGGCCCTGAGACTGGCACTCTGGGCCCCTAGAGGAGTGATTTAGTGGGAGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR CCA 72 bp | GTGCCACAGATGCCAAAGACTACCAGGACAGCTCACTaGTTAGGATGGGGTGAGGGCAGGTGGCCAGGGCTA | + |
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Preference number: 3 (lower is better) Translates to: VPQMPKTTRTAH*LGWGEGRWPGL Trigger: TAGCCCTGGCCACCTGCCCTCACCCCATCCTAACCAGTGAGCTGTCCTGGTAGTCTTTGGCATCTGTGGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR TCA 72 bp | GGCCAGCAGGTGCTTTCCACTGCACTGGGCCTTAGCTaGAAGTCTCTAAGCCGGAGAAACCATGACACAGGG | + |
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Preference number: 3 (lower is better) Translates to: GQQVLSTALGLS*KSLSRRNHDTG Trigger: CCCTGTGTCATGGTTTCTCCGGCTTAGAGACTTTCAGCTAAGGCCCAGTGCAGTGGAAAGCACCTGCTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| 3UTR CCA 72 bp | CTTGCTAGGTCTTCAGTTCTTGGTGAGTCTTCAATGTaGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: LARSSVLGESSM*YPGLGGEAGSP Trigger: AGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAGACCTAGCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| 3UTR-3UTR CAA 90 bp | GTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTAGGTCTTCAGTTCTaGGTGAGTCTTCAATGTGGT | + |
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Preference number: 3 (lower is better) Translates to: VSLQCGIQAWVGKQVALSLGLQF*VSLQCG Trigger: ACCACATTGAAGACTCACCAAGAACTGAAGACCTAG...ACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| 3UTR TCA 72 bp | CCACTGTGTTCCTCACAGCAGCTGAGTTACAGAAAATaGGTGCCACAGATGCCAAAGACTACCAGGACAGCT | + |
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Preference number: 3 (lower is better) Translates to: PLCSSQQLSYRK*VPQMPKTTRTA Trigger: AGCTGTCCTGGTAGTCTTTGGCATCTGTGGCACTCATTTTCTGTAACTCAGCTGCTGTGAGGAACACAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| CDS-3UTR TCA 90 bp | GAGAGCCCAGCTCCCACAAGCCTCGACCTCCCACTAAATCACTCCTCTAGGGGCCCGGTACAGGGCCACTaGCGGCTCGTTGGCAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: ESPAPTSLDLPLNHSSRGPVQGH*RLVGKD Trigger: GTCCTTGCCAACGAGCCGTCAGTGGCCCTGTACCGG...GCCCCTAGAGGAGTGATTTAGTGGGAGGTCGAGGCTTGTGGGAGCTGGGCTCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| CDS-3UTR TCA 90 bp | TCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGCCGGTACAGGGCCACTaGCGGCTCGTTGGCAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: SMWYPGLGGEAGSPESSRPVQGH*RLVGKD Trigger: GTCCTTGCCAACGAGCCGTCAGTGGCCCTGTACCGG...CCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | ATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGGTCAGGGTCATGCATGTCAGCCTTGTaGTGGGCCAGCTCTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: IQAWVGKQVALSLPGSGSCMSAL*WASSGS Trigger: ACTGCCAGAGCTGGCCCAGCACAAGGCTGACATGCA...TGACCCTGACCCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | ATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGGTCTGCATGTCAGCCTTGTaGTGGGCCAGCTCTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: MWYPGLGGEAGSPESSRVCMSAL*WASSGS Trigger: ACTGCCAGAGCTGGCCCAGCACAAGGCTGACATGCA...GACCCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | ATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGGTCATGGCGCCCTGGCTCTaGTCTTCCCATCTCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: MWYPGLGGEAGSPESSRVMAPWL*SSHLCM Trigger: CATGCAGAGATGGGAAGAGCAGAGCCAGGGCGCCAT...GACCCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | CCCTGCTCTGGTCACCATCCTGGGGATGCCAGGCAGCTGCTCTTTATCACCCACATGGCGCCCTGGCTCTaGTCTTCCCATCTCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: PCSGHHPGDARQLLFITHMAPWL*SSHLCM Trigger: CATGCAGAGATGGGAAGAGCAGAGCCAGGGCGCCAT...GTGGGTGATAAAGAGCAGCTGCCTGGCATCCCCAGGATGGTGACCAGAGCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| CDS-3UTR GCA 90 bp | TGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGGTCAATGGCGCCCTGGCTCTaGTCTTCCCATCTCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: CGIQAWVGKQVALSLPGSMAPWL*SSHLCM Trigger: CATGCAGAGATGGGAAGAGCAGAGCCAGGGCGCCAT...TGACCCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR TCA 90 bp | TCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTTGGTGAGTCTCCGGTACAGGGCCACTaGCGGCTCGTTGGCAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: SVGSRHWPLARSSVLGESPVQGH*RLVGKD Trigger: GTCCTTGCCAACGAGCCGTCAGTGGCCCTGTACCGG...AGACTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | TCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGATGGCGCCCTGGCTCTaGTCTTCCCATCTCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: SMWYPGLGGEAGSPESSRMAPWL*SSHLCM Trigger: CATGCAGAGATGGGAAGAGCAGAGCCAGGGCGCCAT...CCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR CCA 90 bp | ATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTCCAGGGTCGTGTATATGGCGCCCTaGCTCTGCTCTTCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: MWYPGLGGEAGSPESSRVVYMAP*LCSSHL Trigger: GAGATGGGAAGAGCAGAGCCAGGGCGCCATATACAC...GACCCTGGAAGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR TCA 90 bp | AGGTCTTCAGTTCTTGGTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAACCGGTACAGGGCCACTaGCGGCTCGTTGGCAAGGAC | + |
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Preference number: 4 (lower is better) Translates to: RSSVLGESSMWYPGLGGEPVQGH*RLVGKD Trigger: GTCCTTGCCAACGAGCCGTCAGTGGCCCTGTACCGG...TTCCCCACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | GTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTAGCTCTTCACAGCACTaGAGGCGTACTCCACGGTGT | + |
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Preference number: 4 (lower is better) Translates to: VSLQCGIQAWVGKQVALSSSSQH*RRTPRC Trigger: ACACCGTGGAGTACGCCTGCAGTGCTGTGAAGAGCT...ACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS-3UTR CCA 90 bp | TTGGGCACTGGTGTTCATGTGGTCCCGGATACTGATGGCCTGTTTGAGCAGGCCGTGTATATGGCGCCCTaGCTCTGCTCTTCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: LGTGVHVVPDTDGLFEQAVYMAP*LCSSHL Trigger: GAGATGGGAAGAGCAGAGCCAGGGCGCCATATACAC...GGCCTGCTCAAACAGGCCATCAGTATCCGGGACCACATGAACACCAGTGCCCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| CDS-3UTR CCA 90 bp | CTTCAGTTCTTGGTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGGGGACAGTTTCTCCTaGCTGTGGCCTTGGGCACTG | + |
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Preference number: 4 (lower is better) Translates to: LQFLVSLQCGIQAWVGKQGDSFS*LWPWAL Trigger: CAGTGCCCAAGGCCACAGCCAGGAGAAACTGTCCCC...CTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS-3UTR GCA 90 bp | CTTCAGTTCTTGGTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGTGCATGTCAGCCTTGTaGTGGGCCAGCTCTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LQFLVSLQCGIQAWVGKQCMSAL*WASSGS Trigger: ACTGCCAGAGCTGGCCCAGCACAAGGCTGACATGCA...CTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | GAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTTGCTCTTCCCATCTCTaGATGTCAGCCTTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ESSMWYPGLGGEAGSPESCSSHL*MSALCW Trigger: CCAGCACAAGGCTGACATGCAGAGATGGGAAGAGCA...AGACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR CCA 90 bp | GAATCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTTGGTGAGTCCTGGCTGTGGCCTTaGGCACTGGTGTTCATGTGG | + |
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Preference number: 4 (lower is better) Translates to: ESVGSRHWPLARSSVLGESWLWP*ALVFMW Trigger: CCACATGAACACCAGTGCCCAAGGCCACAGCCAGGA...CTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGATTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS-3UTR CCA 90 bp | TGGTCCCGGATACTGATGGCCTGTTTGAGCAGGCCTTCCACACTACGGAAGTACTCTTCTTCCACCATGTaGGCTCTGCAGGCGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: WSRILMACLSRPSTLRKYSSSTM*ALQAYS Trigger: GGAGTACGCCTGCAGAGCCCACATGGTGGAAGAAGA...GTACTTCCGTAGTGTGGAAGGCCTGCTCAAACAGGCCATCAGTATCCGGGACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| CDS-3UTR CCA 90 bp | ATGTGGTCCCGGATACTGATGGCCTGTTTGAGCAGGCCTTCCACACTACGGAAGTCTTCTTCCACCATGTaGGCTCTGCAGGCGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: MWSRILMACLSRPSTLRKSSSTM*ALQAYS Trigger: GGAGTACGCCTGCAGAGCCCACATGGTGGAAGAAGA...CTTCCGTAGTGTGGAAGGCCTGCTCAAACAGGCCATCAGTATCCGGGACCACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| 3UTR CAA 72 bp | GCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTaGGTGAGTCTTCAATGTGGTATCCAGGCCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: AAGTGHLLGLQF*VSLQCGIQAWV Trigger: CACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| 3UTR CAA 72 bp | CTGGTGTTCATGTGGTCCCGGATACTGATGGCCTGTTaGAGCAGGCCTTCCACACTACGGAAGTACACGCTG | + |
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Preference number: 4 (lower is better) Translates to: LVFMWSRILMAC*SRPSTLRKYTL Trigger: CAGCGTGTACTTCCGTAGTGTGGAAGGCCTGCTCAAACAGGCCATCAGTATCCGGGACCACATGAACACCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| CDS-3UTR GCA 90 bp | TCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTTGGTGAGTCTAGCTCTTCACAGCACTaGAGGCGTACTCCACGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SVGSRHWPLARSSVLGESSSSQH*RRTPRC Trigger: ACACCGTGGAGTACGCCTGCAGTGCTGTGAAGAGCT...AGACTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS-3UTR CCA 90 bp | TCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTTGGTGAGTCTGTGTATATGGCGCCCTaGCTCTGCTCTTCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: SVGSRHWPLARSSVLGESVYMAP*LCSSHL Trigger: GAGATGGGAAGAGCAGAGCCAGGGCGCCATATACAC...AGACTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR CCA 90 bp | CTCACAGCAGCTGAGTTACAGAAAATGAGTGCCACAGATGCCAAAGACTACCAGGTGTATATGGCGCCCTaGCTCTGCTCTTCCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: LTAAELQKMSATDAKDYQVYMAP*LCSSHL Trigger: GAGATGGGAAGAGCAGAGCCAGGGCGCCATATACAC...CTGGTAGTCTTTGGCATCTGTGGCACTCATTTTCTGTAACTCAGCTGCTGTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123760.8 |
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| CDS-3UTR GCA 90 bp | TTCACAGCACTTAAACCAATTATTTATGGAGGTGATGCATCTTCCGAGGCATCCTGCATGTCAGCCTTGTaGTGGGCCAGCTCTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: FTALKPIIYGGDASSEASCMSAL*WASSGS Trigger: ACTGCCAGAGCTGGCCCAGCACAAGGCTGACATGCA...GGATGCCTCGGAAGATGCATCACCTCCATAAATAATTGGTTTAAGTGCTGTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| CDS CCA 90 bp | GCGCCCTGGCTCTGCTCTTCCCATCTCTGCATGTCAGCCTTGTGCTaGGCCAGCTCTGGCAGTGAACGGCGCACATGTTCCTGTAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: APWLCSSHLCMSALC*ASSGSERRTCSCSR Trigger: CCGGCTACAGGAACATGTGCGCCGTTCACTGCCAGAGCTGGCCCAGCACAAGGCTGACATGCAGAGATGGGAAGAGCAGAGCCAGGGCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| CDS-3UTR CAA 90 bp | GTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAGCAGGTAGCCCTGAGTCTCTGCATGTCAGCCTaGTGCTGGGCCAGCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: VSLQCGIQAWVGKQVALSLCMSA*CWASSG Trigger: GCCAGAGCTGGCCCAGCACAAGGCTGACATGCAGAG...ACTCAGGGCTACCTGCTTCCCCACCCAGGCCTGGATACCACATTGAAGACTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR CAA 90 bp | CATGTGGTCCCGGATACTGATGGCCTGTTTGAGCAGGCCTTCCACACTACGGAACTCTGCATGTCAGCCTaGTGCTGGGCCAGCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: HVVPDTDGLFEQAFHTTELCMSA*CWASSG Trigger: GCCAGAGCTGGCCCAGCACAAGGCTGACATGCAGAG...TTCCGTAGTGTGGAAGGCCTGCTCAAACAGGCCATCAGTATCCGGGACCACATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000123760.8 ENSMUST00000129668.8 |
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| CDS-3UTR CAA 90 bp | GAATCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTTGGTGAGCTCTGCATGTCAGCCTaGTGCTGGGCCAGCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: ESVGSRHWPLARSSVLGELCMSA*CWASSG Trigger: GCCAGAGCTGGCCCAGCACAAGGCTGACATGCAGAG...CTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGATTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR CAA 90 bp | TCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTTGGTGAGTCTCTCTGCATGTCAGCCTaGTGCTGGGCCAGCTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: SVGSRHWPLARSSVLGESLCMSA*CWASSG Trigger: GCCAGAGCTGGCCCAGCACAAGGCTGACATGCAGAG...AGACTCACCAAGAACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000129668.8 |
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| CDS-3UTR CAA 90 bp | ACCAAGGTAGACAATTATGGCAGAATCAGTAGGCAGCAGGCACTGGCCACTTGCCTCCTGGCTGTGGCCTaGGGCACTGGTGTTCATGTG | + |
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Preference number: 5 (lower is better) Translates to: TKVDNYGRISRQQALATCLLAVA*GTGVHV Trigger: CACATGAACACCAGTGCCCAAGGCCACAGCCAGGAG...GCAAGTGGCCAGTGCCTGCTGCCTACTGATTCTGCCATAATTGTCTACCTTGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS-3UTR CAA 90 bp | ATTATGGCAGAATCAGTAGGCAGCAGGCACTGGCCACTTGCTAGGTCTTCAGTTCTCCTGGCTGTGGCCTaGGGCACTGGTGTTCATGTG | + |
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Preference number: 5 (lower is better) Translates to: IMAESVGSRHWPLARSSVLLAVA*GTGVHV Trigger: CACATGAACACCAGTGCCCAAGGCCACAGCCAGGAG...AACTGAAGACCTAGCAAGTGGCCAGTGCCTGCTGCCTACTGATTCTGCCATAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS-3UTR CAA 90 bp | AGGTCTTCAGTTCTTGGTGAGTCTTCAATGTGGTATCCAGGCCTGGGTGGGGAAATACTGATGGCCTGTTaGAGCAGGCCTTCCACACTA | + |
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Preference number: 5 (lower is better) Translates to: RSSVLGESSMWYPGLGGEILMAC*SRPSTL Trigger: TAGTGTGGAAGGCCTGCTCAAACAGGCCATCAGTAT...TTCCCCACCCAGGCCTGGATACCACATTGAAGACTCACCAAGAACTGAAGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 |
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| CDS CCA 72 bp | CTCTGCTCTTCCCATCTCTGCATGTCAGCCTTGTGCTaGGCCAGCTCTGGCAGTGAACGGCGCACATGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LCSSHLCMSALC*ASSGSERRTCS Trigger: GGAACATGTGCGCCGTTCACTGCCAGAGCTGGCCCAGCACAAGGCTGACATGCAGAGATGGGAAGAGCAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002418.15 ENSMUST00000110139.2 ENSMUST00000123760.8 ENSMUST00000129668.8 |
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