Pregenerated sensors for BORCS7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062376Ensembl transcript IDs: ENSMUST00000074912.8
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATGGAAAGGGTCTGCTCTTTGACAGTCTGTGGAAGTCACAGGAATaGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCTTTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: HGKGLLFDSLWKSQE*GHKQMPFALLLLCP Trigger: GGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACAGACTGTCAAAGAGCAGACCCTTTCCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR TCA 90 bp | CATATTTTATATGATGCTGGGAGTACATGGAAAGGGTCTGCTCTTTaGCAGTCTGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCC | + |
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Preference number: 1 (lower is better) Translates to: HILYDAGSTWKGSAL*QSVEVTGMGPQANA Trigger: GGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACAGACTGTCAAAGAGCAGACCCTTTCCATGTACTCCCAGCATCATATAAAATATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR GCA 90 bp | TCTTTGACAGTCTGTGGAAGTCACAGGAATGGGGCCACAAGCAAATaGCATTTGCACTGCTGCTTCTTTGTCCCTTTGTGGATCATTCTT | + |
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Preference number: 1 (lower is better) Translates to: SLTVCGSHRNGATSK*HLHCCFFVPLWIIL Trigger: AAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACAGACTGTCAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR TCA 90 bp | TTGCACTGCTGCTTCTTTGTCCCTTTGTGGATCATTCTTCACAATTaGTCTGGACACATTCTTTCAAATGCTAACTTTGTAATGCCATGT | + |
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Preference number: 1 (lower is better) Translates to: LHCCFFVPLWIILHN*SGHILSNANFVMPC Trigger: ACATGGCATTACAAAGTTAGCATTTGAAAGAATGTGTCCAGATCAATTGTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR TCA 90 bp | GATCCTCCTGCCTCAGCCTCCCAAGTATCGGAGACTATGTGTTACTCAGTGACCAGACCAGGCTGGCCTTaGACTCAGAAAAGCTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: DPPASASQVSETMCYSVTRPGWP*TQKSWD Trigger: ATCCCAGCTTTTCTGAGTTCAAGGCCAGCCTGGTCT...GGTCACTGAGTAACACATAGTCTCCGATACTTGGGAGGCTGAGGCAGGAGGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CCA 90 bp | GATCCTCCTGCCTCAGCCTCCCAAGTATCGGAGACTATGTGTTACTCAGTGACCGTGCACCACCACGCCTaGCTTCACAAGTCTTTTCTA | + |
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Preference number: 2 (lower is better) Translates to: DPPASASQVSETMCYSVTVHHHA*LHKSFL Trigger: TAGAAAAGACTTGTGAAGCCAGGCGTGGTGGTGCAC...GGTCACTGAGTAACACATAGTCTCCGATACTTGGGAGGCTGAGGCAGGAGGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCCCATGCTCAGTCACTTaGCTTCTTCTTTTCACGAGT | + |
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Preference number: 2 (lower is better) Translates to: CGSHRNGATSKCHLHCCFPCSVT*LLLFTS Trigger: ACTCGTGAAAAGAAGAAGCCAAGTGACTGAGCATGG...GAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CCA 90 bp | AGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCTTTGTCCTTTCTGTGTTGCCCTaGATGGTCTCAACTTTCTGG | + |
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Preference number: 2 (lower is better) Translates to: SHRNGATSKCHLHCCFFVLSVLP*MVSTFW Trigger: CCAGAAAGTTGAGACCATCCAGGGCAACACAGAAAG...GACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR CAA 90 bp | ACAGTCTGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTaGCACTGCTGCTTCTTTGTCCCTTTGTGGATCATTCTTCACAAT | + |
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Preference number: 2 (lower is better) Translates to: TVCGSHRNGATSKCH*HCCFFVPLWIILHN Trigger: ATTGTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACAGACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR TCA 90 bp | GATTGCACTTTAGGCATCGAGCTGAGGAGGAACTCTTCAGGTCTAACTCACTTTATGATTCTCTGGAGATaGAGATGGAGACCAAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: DCTLGIELRRNSSGLTHFMILWR*RWRPRP Trigger: TGGCCTTGGTCTCCATCTTCATCTCCAGAGAATCAT...AAAGTGAGTTAGACCTGAAGAGTTCCTCCTCAGCTCGATGCCTAAAGTGCAATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR TCA 90 bp | AGCAAATGCCATTTGCACTGCTGCTTCTTTGTCCCTTTGTGGATCATTCTTCACTGTAATCCCAATAGTTaGGAGGCTACAGCAGGGGGA | + |
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Preference number: 2 (lower is better) Translates to: SKCHLHCCFFVPLWIILHCNPNS*EATAGG Trigger: TCCCCCTGCTGTAGCCTCTCAACTATTGGGATTACA...GTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR CAA 90 bp | ACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCTTaGTCCCTTTGTGGATCATTCTTCACAATTGATCTGGACACATTC | + |
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Preference number: 2 (lower is better) Translates to: TGMGPQANAICTAAS*SLCGSFFTIDLDTF Trigger: GAATGTGTCCAGATCAATTGTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCCATCAATTTAAGAACTaGTTCCATGCTCAGTCACTT | + |
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Preference number: 2 (lower is better) Translates to: CGSHRNGATSKCHLHCCFHQFKN*FHAQSL Trigger: AAGTGACTGAGCATGGAAGCAGTTCTTAAATTGATG...GAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCCATTTTTACATTGATTaGACTTTAGGCATCGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: CGSHRNGATSKCHLHCCFHFYID*TLGIEL Trigger: CAGCTCGATGCCTAAAGTGCAATCAATGTAAAAATG...GAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR TCA 90 bp | GATTGCACTTTAGGCATCGAGCTGAGGAGGAACTCTTCAGGTCTAACTCACTTTGGGACACCACTGGCCTaGTTTTCATATAAGAATTTG | + |
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Preference number: 2 (lower is better) Translates to: DCTLGIELRRNSSGLTHFGTPLA*FSYKNL Trigger: CAAATTCTTATATGAAAATCAGGCCAGTGGTGTCCC...AAAGTGAGTTAGACCTGAAGAGTTCCTCCTCAGCTCGATGCCTAAAGTGCAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR GCA 90 bp | TGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCATGCATTTCTTAATTTaGCCTTTTATGGTTGACGTG | + |
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Preference number: 2 (lower is better) Translates to: CGSHRNGATSKCHLHCCFMHFLI*PFMVDV Trigger: CACGTCAACCATAAAAGGGCAAATTAAGAAATGCAT...GAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCCTCTATCCTTTCCTCTTCTTCTTGGAGATAGGTTCTTTCTGTGTTGCCCTCAAGTCTTTTCTAGATaGTTCTCTGGAGATGAAGAT | + |
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Preference number: 2 (lower is better) Translates to: LPLSFPLLLGDRFFLCCPQVFSR*FSGDED Trigger: ATCTTCATCTCCAGAGAATCATCTAGAAAAGACTTG...AGGGCAACACAGAAAGAACCTATCTCCAAGAAGAAGAGGAAAGGATAGAGGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CCA 90 bp | TGTGGATCATTCTTCACAATTGATCTGGACACATTCTTTCAAATGCTAACTTTGATGGTCTCAACTTTCTaGGCACAAGTGATCCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: CGSFFTIDLDTFFQMLTLMVSTF*AQVILL Trigger: CAGGAGGATCACTTGTGCCCAGAAAGTTGAGACCAT...CAAAGTTAGCATTTGAAAGAATGTGTCCAGATCAATTGTGAAGAATGATCCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR TCA 72 bp | GACACCAGTGAGCTTTCTGAAGCGGGTGATGGGAACTaGACCTGGGTCCTCTCCAAAAGCAGCAAGTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: DTSELSEAGDGN*TWVLSKSSKCF Trigger: AAAACACTTGCTGCTTTTGGAGAGGACCCAGGTTCAGTTCCCATCACCCGCTTCAGAAAGCTCACTGGTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR GCA 72 bp | GTCTGTGGAAGTCACAGGAATGGGGCCACAAGCAAATaGCATTTGCACTGCTGCTTCTTTGTCCCTTTGTGG | + |
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Preference number: 3 (lower is better) Translates to: VCGSHRNGATSK*HLHCCFFVPLW Trigger: CCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR CCA 72 bp | GGAGTACATGGAAAGGGTCTGCTCTTTGACAGTCTGTaGAAGTCACAGGAATGGGGCCACAAGCAAATGCCA | + |
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Preference number: 3 (lower is better) Translates to: GVHGKGLLFDSL*KSQEWGHKQMP Trigger: TGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACAGACTGTCAAAGAGCAGACCCTTTCCATGTACTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR GCA 72 bp | CACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTaGTGCTTCTTTGTCCCTTTGTGGATCATTCTTCAC | + |
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Preference number: 3 (lower is better) Translates to: HRNGATSKCHLH*CFFVPLWIILH Trigger: GTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CAA 90 bp | CTCCCTCTATCCTTTCCTCTTCTTCTTGGAGATAGGTTCTTTCTGTGTTGCCCTTCCATGCTCAGTCACTaGGCTTCTTCTTTTCACGAG | + |
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Preference number: 3 (lower is better) Translates to: LPLSFPLLLGDRFFLCCPSMLSH*ASSFHE Trigger: CTCGTGAAAAGAAGAAGCCAAGTGACTGAGCATGGA...AGGGCAACACAGAAAGAACCTATCTCCAAGAAGAAGAGGAAAGGATAGAGGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR GCA 72 bp | AGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTaGTTCTTTGTCCCTTTGTGGATCATTCTTCACAAT | + |
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Preference number: 3 (lower is better) Translates to: RNGATSKCHLHC*FFVPLWIILHN Trigger: ATTGTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CAA 90 bp | GATTGCACTTTAGGCATCGAGCTGAGGAGGAACTCTTCAGGTCTAACTCACTTTCCTTTCCTCTTCTTCTaGGAGATAGGTTCTTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: DCTLGIELRRNSSGLTHFPFLFF*EIGSFC Trigger: ACAGAAAGAACCTATCTCCAAGAAGAAGAGGAAAGG...AAAGTGAGTTAGACCTGAAGAGTTCCTCCTCAGCTCGATGCCTAAAGTGCAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR TCA 72 bp | TGCCATGTCTTTATAAGGAGACAGACATTTTTACATTaGTTGCACTTTAGGCATCGAGCTGAGGAGGAACTC | + |
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Preference number: 3 (lower is better) Translates to: CHVFIRRQTFLH*LHFRHRAEEEL Trigger: GAGTTCCTCCTCAGCTCGATGCCTAAAGTGCAATCAATGTAAAAATGTCTGTCTCCTTATAAAGACATGGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CAA 90 bp | AGCAAATGCCATTTGCACTGCTGCTTCTTTGTCCCTTTGTGGATCATTCTTCACTTGTTTTGTTGGAGATaGGGTCTGTGTAGTTCTTTT | + |
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Preference number: 3 (lower is better) Translates to: SKCHLHCCFFVPLWIILHLFCWR*GLCSSF Trigger: AAAAGAACTACACAGACCCAATCTCCAACAAAACAA...GTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR-3UTR CAA 90 bp | TTTTTAACTGCTGAGCCATCGCACCAGCTTCATATGGTCATATTTTATCTTCATTGCACTGCTGCTTCTTaGTCCCTTTGTGGATCATTC | + |
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Preference number: 3 (lower is better) Translates to: FLTAEPSHQLHMVIFYLHCTAAS*SLCGSF Trigger: GAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCA...ATGAAGATAAAATATGACCATATGAAGCTGGTGCGATGGCTCAGCAGTTAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR TCA 72 bp | TGCTTCTTTGTCCCTTTGTGGATCATTCTTCACAATTaGTCTGGACACATTCTTTCAAATGCTAACTTTGTA | + |
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Preference number: 3 (lower is better) Translates to: CFFVPLWIILHN*SGHILSNANFV Trigger: TACAAAGTTAGCATTTGAAAGAATGTGTCCAGATCAATTGTGAAGAATGATCCACAAAGGGACAAAGAAGCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR GCA 90 bp | TCCTCCTGCCTCAGCCTCCCAAGTATCGGAGACTATGTGTTACTCAGTGACCAGATGTTTCGAGCTGCCTaGCCCAGCAGCTCGGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SSCLSLPSIGDYVLLSDQMFRAA*PSSSEL Trigger: GAGCTCCGAGCTGCTGGGGCAGGCAGCTCGAAACAT...CTGGTCACTGAGTAACACATAGTCTCCGATACTTGGGAGGCTGAGGCAGGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR GCA 90 bp | AGAAAGAAAGAAGCCAGAAACAAAGGTCAAGGCAGAGCTGCAGCTGGCCAGGGGTACCATGTTTCGAGCTaGCTGCCCCAGCAGCTCGGA | + |
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Preference number: 4 (lower is better) Translates to: RKKEARNKGQGRAAAGQGYHVSS*LPQQLG Trigger: TCCGAGCTGCTGGGGCAGGCAGCTCGAAACATGGTA...CCCCTGGCCAGCTGCAGCTCTGCCTTGACCTTTGTTTCTGGCTTCTTTCTTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR CAA 72 bp | GGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTaGCACTGCTGCTTCTTTGTCCCTTTGTGGATCATT | + |
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Preference number: 4 (lower is better) Translates to: GSHRNGATSKCH*HCCFFVPLWII Trigger: AATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR TCA 90 bp | GCTGAGCCATCGCACCAGCTTCATATGGTCATATTTTATCTTCATATGGTCATATCAGCACCTGCTTGGTaGGCGCGATTACATCGGTGC | + |
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Preference number: 4 (lower is better) Translates to: AEPSHQLHMVIFYLHMVISAPAW*ARLHRC Trigger: GCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGA...TATGACCATATGAAGATAAAATATGACCATATGAAGCTGGTGCGATGGCTCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR TCA 90 bp | TTTTTAACTGCTGAGCCATCGCACCAGCTTCATATGGTCATATTTTATCTTCATAGCCCCTTCACGGACTaGCCAAATCGGGCTTGCGAA | + |
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Preference number: 4 (lower is better) Translates to: FLTAEPSHQLHMVIFYLHSPFTD*PNRACE Trigger: TTCGCAAGCCCGATTTGGTCAGTCCGTGAAGGGGCT...ATGAAGATAAAATATGACCATATGAAGCTGGTGCGATGGCTCAGCAGTTAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| 3UTR CAA 72 bp | GGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCTTaGTCCCTTTGTGGATCATTCTTCACAATTGATCTG | + |
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Preference number: 4 (lower is better) Translates to: GPQANAICTAAS*SLCGSFFTIDL Trigger: CAGATCAATTGTGAAGAATGATCCACAAAGGGACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR GCA 90 bp | TTTTTAACTGCTGAGCCATCGCACCAGCTTCATATGGTCATATTTTATCTTCATGAGCCTTTCAGCACCTaGTTGGTGAGCGCGATTACA | + |
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Preference number: 4 (lower is better) Translates to: FLTAEPSHQLHMVIFYLHEPFST*LVSAIT Trigger: TGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTC...ATGAAGATAAAATATGACCATATGAAGCTGGTGCGATGGCTCAGCAGTTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR TCA 90 bp | GCTGAGCCATCGCACCAGCTTCATATGGTCATATTTTATCTTCATATGGTCATATGTTCCACATTCTTCTaGATAGCTTCTTGCTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: AEPSHQLHMVIFYLHMVICSTFF*IASCWY Trigger: GTACCAGCAAGAAGCTATTCAGAAGAATGTGGAACA...TATGACCATATGAAGATAAAATATGACCATATGAAGCTGGTGCGATGGCTCAGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR TCA 90 bp | GCTGAGCCATCGCACCAGCTTCATATGGTCATATTTTATCTTCATATGGTCATAGCTTCTTGCTGGTACTaGAGGTGTGTTGTTATTATT | + |
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Preference number: 4 (lower is better) Translates to: AEPSHQLHMVIFYLHMVIASCWY*RCVVII Trigger: AATAATAACAACACACCTTCAGTACCAGCAAGAAGC...TATGACCATATGAAGATAAAATATGACCATATGAAGCTGGTGCGATGGCTCAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS GCA 90 bp | GCTGCCTGCCCCAGCAGCTCGGAGCTCCGCGAGCCTTTCAGCACCTaGTTGGTGAGCGCGATTACATCGGTGCCACAGGTGTTCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: AACPSSSELREPFST*LVSAITSVPQVFTF Trigger: GAAGGTGAACACCTGTGGCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTCGCGGAGCTCCGAGCTGCTGGGGCAGGCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR CAA 90 bp | AGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCTTTGTCCCTTTCAGCACCTGCTaGGTGAGCGCGATTACATCG | + |
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Preference number: 5 (lower is better) Translates to: SHRNGATSKCHLHCCFFVPFSTC*VSAITS Trigger: CGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGG...GACAAAGAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR CAA 90 bp | GATCCTCCTGCCTCAGCCTCCCAAGTATCGGAGACTATGTGTTACTCAGTGACCCTTCTGAATAGCTTCTaGCTGGTACTGAAGGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: DPPASASQVSETMCYSVTLLNSF*LVLKVC Trigger: ACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAG...GGTCACTGAGTAACACATAGTCTCCGATACTTGGGAGGCTGAGGCAGGAGGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS-3UTR CAA 90 bp | TGTGGAAGTCACAGGAATGGGGCCACAAGCAAATGCCATTTGCACTGCTGCTTCGGTACTGAAGGTGTGTaGTTATTATTGCCATCTTCC | + |
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Preference number: 5 (lower is better) Translates to: CGSHRNGATSKCHLHCCFGTEGV*LLLPSS Trigger: GGAAGATGGCAATAATAACAACACACCTTCAGTACC...GAAGCAGCAGTGCAAATGGCATTTGCTTGTGGCCCCATTCCTGTGACTTCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS GCA 72 bp | CCCAGCAGCTCGGAGCTCCGCGAGCCTTTCAGCACCTaGTTGGTGAGCGCGATTACATCGGTGCCACAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PSSSELREPFST*LVSAITSVPQV Trigger: CACCTGTGGCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTCGCGGAGCTCCGAGCTGCTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS CAA 90 bp | GCCTGCCCCAGCAGCTCGGAGCTCCGCGAGCCTTTCAGCACCTGCTaGGTGAGCGCGATTACATCGGTGCCACAGGTGTTCACCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: ACPSSSELREPFSTC*VSAITSVPQVFTFS Trigger: GGAGAAGGTGAACACCTGTGGCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTCGCGGAGCTCCGAGCTGCTGGGGCAGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS TCA 72 bp | GCTCGGAGCTCCGCGAGCCTTTCAGCACCTGCTTGGTaGGCGCGATTACATCGGTGCCACAGGTGTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: ARSSASLSAPAW*ARLHRCHRCSP Trigger: AGGTGAACACCTGTGGCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTCGCGGAGCTCCGAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS CAA 72 bp | AGCAGCTCGGAGCTCCGCGAGCCTTTCAGCACCTGCTaGGTGAGCGCGATTACATCGGTGCCACAGGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: SSSELREPFSTC*VSAITSVPQVF Trigger: GAACACCTGTGGCACCGATGTAATCGCGCTCACCAAGCAGGTGCTGAAAGGCTCGCGGAGCTCCGAGCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS TCA 72 bp | GTGTTCACCTTCTCCGTGAGAAGCCCCTTCACGGACTaGCCAAATCGGGCTTGCGAATCCGGCGTCCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: VFTFSVRSPFTD*PNRACESGVPV Trigger: GACTGGGACGCCGGATTCGCAAGCCCGATTTGGTCAGTCCGTGAAGGGGCTTCTCACGGAGAAGGTGAACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS CCA 72 bp | TTGCCATCTTCCTTAAACTATCTTCCGAGTGTAAGATaGCATCTTCCTGTAGTACCATGTTTCGAGCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LPSSLNYLPSVR*HLPVVPCFELP Trigger: AGGCAGCTCGAAACATGGTACTACAGGAAGATGCCATCTTACACTCGGAAGATAGTTTAAGGAAGATGGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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| CDS CAA 72 bp | GTCAGGCGACTGTTCCACATTCTTCTGAATAGCTTCTaGCTGGTACTGAAGGTGTGTTGTTATTATTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: VRRLFHILLNSF*LVLKVCCYYCH Trigger: ATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAATGTGGAACAGTCGCCTGAC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074912.8 |
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