Pregenerated sensors for BORCS6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045176Ensembl transcript IDs: ENSMUST00000051888.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCGCTCAAGTTCCTAAAGCCCCTGGCACTTGAGGTGTGTGACCATTaGGATCCGGATAGCCGCAGCGGGGCTGAGGTCTCTCTGATCACA | + |
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Preference number: 1 (lower is better) Translates to: PLKFLKPLALEVCDH*DPDSRSGAEVSLIT Trigger: TGTGATCAGAGAGACCTCAGCCCCGCTGCGGCTATCCGGATCCCAATGGTCACACACCTCAAGTGCCAGGGGCTTTAGGAACTTGAGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR TCA 90 bp | CATCCCCTCAGCAAGCAGTTTCCACCAGGGCTCTTTGAAGAATCCTaGGGGTCCTACTGGACCCTGGTCTGGCCAGGTTACGCATGGTCT | + |
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Preference number: 1 (lower is better) Translates to: HPLSKQFPPGLFEES*GSYWTLVWPGYAWS Trigger: AGACCATGCGTAACCTGGCCAGACCAGGGTCCAGTAGGACCCTCAGGATTCTTCAAAGAGCCCTGGTGGAAACTGCTTGCTGAGGGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR-3UTR TCA 90 bp | GGTCTCTCTGATCACACATTCGTGTCTGCCCCACCCTCCAGCAGAGATCTAAGGTCCACCAGGGCTCTTTaGAGAATCCTGAGGGTCCTA | + |
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Preference number: 2 (lower is better) Translates to: GLSDHTFVSAPPSSRDLRSTRAL*RILRVL Trigger: TAGGACCCTCAGGATTCTTCAAAGAGCCCTGGTGGA...CCTTAGATCTCTGCTGGAGGGTGGGGCAGACACGAATGTGTGATCAGAGAGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR-3UTR CCA 90 bp | AAATTAATTAGAATACTCCACAACAGGTGGGCTTCAAAACCAGTAACAATTCGACCCTCGCATGGTGTGTaGGCAAGAACCGCTCAAGTT | + |
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Preference number: 2 (lower is better) Translates to: KLIRILHNRWASKPVTIRPSHGV*ARTAQV Trigger: AACTTGAGCGGTTCTTGCCCACACACCATGCGAGGG...TCGAATTGTTACTGGTTTTGAAGCCCACCTGTTGTGGAGTATTCTAATTAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR TCA 72 bp | GGGATCCGGATAGCCGCAGCGGGGCTGAGGTCTCTCTaGTCACACATTCGTGTCTGCCCCACCCTCCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: GIRIAAAGLRSL*SHIRVCPTLQQ Trigger: CTGCTGGAGGGTGGGGCAGACACGAATGTGTGATCAGAGAGACCTCAGCCCCGCTGCGGCTATCCGGATCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR CCA 72 bp | TTCCTAAAGCCCCTGGCACTTGAGGTGTGTGACCATTaGGATCCGGATAGCCGCAGCGGGGCTGAGGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: FLKPLALEVCDH*DPDSRSGAEVS Trigger: AGAGACCTCAGCCCCGCTGCGGCTATCCGGATCCCAATGGTCACACACCTCAAGTGCCAGGGGCTTTAGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR CCA 72 bp | TATGCAGATGTTGCGCCCTCACCCTCGCATGGTGTGTaGGCAAGAACCGCTCAAGTTCCTAAAGCCCCTGGC | + |
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Preference number: 3 (lower is better) Translates to: YADVAPSPSHGV*ARTAQVPKAPG Trigger: GCCAGGGGCTTTAGGAACTTGAGCGGTTCTTGCCCACACACCATGCGAGGGTGAGGGCGCAACATCTGCATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR GCA 72 bp | CATTTTAGGGGACCAGAGGAAAGAAGCGGGAGGTTATaGAGATGTTGCGCCCTCACCCTCGCATGGTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: HFRGPEERSGRL*RCCALTLAWCV Trigger: CACACACCATGCGAGGGTGAGGGCGCAACATCTGCATAACCTCCCGCTTCTTTCCTCTGGTCCCCTAAAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR CCA 72 bp | GGCTCTTTGAAGAATCCTGAGGGTCCTACTGGACCCTaGTCTGGCCAGGTTACGCATGGTCTCTCCTCTATG | + |
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Preference number: 3 (lower is better) Translates to: GSLKNPEGPTGP*SGQVTHGLSSM Trigger: CATAGAGGAGAGACCATGCGTAACCTGGCCAGACCAGGGTCCAGTAGGACCCTCAGGATTCTTCAAAGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR-3UTR CAA 90 bp | AGCTACATCCCTTTTCACCAGGAGAATCCTCACAACTTCCCCATTCACACTCCATTCCACCAGGGCTCTTaGAAGAATCCTGAGGGTCCT | + |
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Preference number: 3 (lower is better) Translates to: SYIPFHQENPHNFPIHTPFHQGS*KNPEGP Trigger: AGGACCCTCAGGATTCTTCAAAGAGCCCTGGTGGAA...TGGAGTGTGAATGGGGAAGTTGTGAGGATTCTCCTGGTGAAAAGGGATGTAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR CCA 72 bp | AGAAAGCCAAAATTAATTAGAATACTCCACAACAGGTaGGCTTCAAAACCAGTAACAATTCGACCGGAACCC | + |
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Preference number: 3 (lower is better) Translates to: RKPKLIRILHNR*ASKPVTIRPEP Trigger: GGGTTCCGGTCGAATTGTTACTGGTTTTGAAGCCCACCTGTTGTGGAGTATTCTAATTAATTTTGGCTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR GCA 90 bp | AGCCCCTGGCACTTGAGGTGTGTGACCATTGGGATCCGGATAGCCGCAGCGGGGCGTGGCGGCTCACCGTaGCCTCCAGCTCTAGGGGGC | + |
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Preference number: 4 (lower is better) Translates to: SPWHLRCVTIGIRIAAAGRGGSP*PPALGG Trigger: GCCCCCTAGAGCTGGAGGGCACGGTGAGCCGCCACG...CCCCGCTGCGGCTATCCGGATCCCAATGGTCACACACCTCAAGTGCCAGGGGCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CCA 90 bp | AGCCCCTGGCACTTGAGGTGTGTGACCATTGGGATCCGGATAGCCGCAGCGGGGCGATGGGAGGGATGGTaGGGGTGGGTGCGGGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: SPWHLRCVTIGIRIAAAGRWEGW*GWVRAL Trigger: TAACGCCCGCACCCACCCCCACCATCCCTCCCATCG...CCCCGCTGCGGCTATCCGGATCCCAATGGTCACACACCTCAAGTGCCAGGGGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CCA 90 bp | GCTGAGGTCTCTCTGATCACACATTCGTGTCTGCCCCACCCTCCAGCAGAGATCGCACGTCCGGGTCGATaGGAGGGATGGTGGGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: AEVSLITHSCLPHPPAEIARPGR*EGWWGW Trigger: CCACCCCCACCATCCCTCCCATCGACCCGGACGTGC...GATCTCTGCTGGAGGGTGGGGCAGACACGAATGTGTGATCAGAGAGACCTCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR TCA 90 bp | CCCTCACCCTCGCATGGTGTGTGGGCAAGAACCGCTCAAGTTCCTAAAGCCCCTTTGTTGGCCACAAAGTaGGTAAGGTCGCCGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PSPSHGVWARTAQVPKAPLLATK*VRSPWR Trigger: CCGCCACGGCGACCTTACTCACTTTGTGGCCAACAA...AGGGGCTTTAGGAACTTGAGCGGTTCTTGCCCACACACCATGCGAGGGTGAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CCA 90 bp | CTGTATTCCCATGGACGGTGTTCTAGCTTAGGGAGAAGGGTCAGGAAGAACAGGAGGGCTGATCCTCGCTaGGCTCCGGCTCCGGGTACC | + |
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Preference number: 4 (lower is better) Translates to: LYSHGRCSSLGRRVRKNRRADPR*APAPGT Trigger: GGTACCCGGAGCCGGAGCCCAGCGAGGATCAGCCCT...CCTGTTCTTCCTGACCCTTCTCCCTAAGCTAGAACACCGTCCATGGGAATACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR GCA 90 bp | TGGGATCCGGATAGCCGCAGCGGGGCTGAGGTCTCTCTGATCACACATTCGTGTTCGTCACCCTCTTGCTaGGGCAGCTCCACATTCATC | + |
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Preference number: 4 (lower is better) Translates to: WDPDSRSGAEVSLITHSCSSPSC*GSSTFI Trigger: GATGAATGTGGAGCTGCCGCAGCAAGAGGGTGACGA...ACACGAATGTGTGATCAGAGAGACCTCAGCCCCGCTGCGGCTATCCGGATCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR TCA 90 bp | AGGGTCAGGAAGAACAGGGTAGCTATAGATGGCCAACTGAATAAAAGCAGAGCTCTCAGAGCGGAGGGCTaGTCCTCGCTGGGCTCCGGC | + |
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Preference number: 4 (lower is better) Translates to: RVRKNRVAIDGQLNKSRALRAEG*SSLGSG Trigger: GCCGGAGCCCAGCGAGGATCAGCCCTCCGCTCTGAG...AGCTCTGCTTTTATTCAGTTGGCCATCTATAGCTACCCTGTTCTTCCTGACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR GCA 90 bp | ACGTACAGGCATCCCCTCAGCAAGCAGTTTCCACCAGGGCTCTTTGAAGAATCCATCTCGGACTTGGCGTaGCAGCCCCTGAACCGGTTG | + |
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Preference number: 4 (lower is better) Translates to: TYRHPLSKQFPPGLFEESISDLA*QPLNRL Trigger: CAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGAT...GGATTCTTCAAAGAGCCCTGGTGGAAACTGCTTGCTGAGGGGATGCCTGTACGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| 3UTR CAA 72 bp | GGCATCCCCTCAGCAAGCAGTTTCCACCAGGGCTCTTaGAAGAATCCTGAGGGTCCTACTGGACCCTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: GIPSASSFHQGS*KNPEGPTGPWS Trigger: AGACCAGGGTCCAGTAGGACCCTCAGGATTCTTCAAAGAGCCCTGGTGGAAACTGCTTGCTGAGGGGATGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR TCA 90 bp | GACCATTGGGATCCGGATAGCCGCAGCGGGGCTGAGGTCTCTCTGATCACACATCACTCAGTCGGATCTTaGGTTGTAGGTTGTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: DHWDPDSRSGAEVSLITHHSVGS*VVGCWP Trigger: TGGCCAACAACCTACAACTCAAGATCCGACTGAGTG...ATGTGTGATCAGAGAGACCTCAGCCCCGCTGCGGCTATCCGGATCCCAATGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CCA 90 bp | AGGGTAGCTATAGATGGCCAACTGAATAAAAGCAGAGCTACATCCCTTTTCACCGGTCGATGGGAGGGATaGTGGGGGTGGGTGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: RVAIDGQLNKSRATSLFTGRWEG*WGWVRA Trigger: CGCCCGCACCCACCCCCACCATCCCTCCCATCGACC...GGTGAAAAGGGATGTAGCTCTGCTTTTATTCAGTTGGCCATCTATAGCTACCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR GCA 90 bp | AGCTACATCCCTTTTCACCAGGAGAATCCTCACAACTTCCCCATTCACACTCCAGCCCATGGGCGATGCTaGCGCTCCAAGTCTTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SYIPFHQENPHNFPIHTPAHGRC*RSKSLG Trigger: CCCCAAAGACTTGGAGCGGCAGCATCGCCCATGGGC...TGGAGTGTGAATGGGGAAGTTGTGAGGATTCTCCTGGTGAAAAGGGATGTAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR GCA 90 bp | AGGGTAGCTATAGATGGCCAACTGAATAAAAGCAGAGCTACATCCCTTTTCACCTCAGCCCGTCCAGGCTaGGGCTGTCCTGAAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: RVAIDGQLNKSRATSLFTSARPG*GCPEGG Trigger: GCCGCCTTCAGGACAGCCGCAGCCTGGACGGGCTGA...GGTGAAAAGGGATGTAGCTCTGCTTTTATTCAGTTGGCCATCTATAGCTACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR GCA 90 bp | GAACCGCTCAAGTTCCTAAAGCCCCTGGCACTTGAGGTGTGTGACCATTGGGATCCAACACCTCCAGCGTaGGTCGGATATCTCGGACTT | + |
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Preference number: 4 (lower is better) Translates to: EPLKFLKPLALEVCDHWDPTPPA*VGYLGL Trigger: AAGTCCGAGATATCCGACGCACGCTGGAGGTGTTGG...ATCCCAATGGTCACACACCTCAAGTGCCAGGGGCTTTAGGAACTTGAGCGGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CCA 90 bp | AGGGTAGCTATAGATGGCCAACTGAATAAAAGCAGAGCTACATCCCTTTTCACCGAGGGATGGTGGGGGTaGGTGCGGGCGTTAGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RVAIDGQLNKSRATSLFTEGWWG*VRALGR Trigger: CCTGCCTAACGCCCGCACCCACCCCCACCATCCCTC...GGTGAAAAGGGATGTAGCTCTGCTTTTATTCAGTTGGCCATCTATAGCTACCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CCA 90 bp | ACGCCCCACTCAGCCCGTCCAGGCTGCGGCTGTCCTGAAGGCGGCTaGGGAAGGAGCGGCCAGCCCTACCCGCCGCCGCCTCTTCGTCCT | + |
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Preference number: 5 (lower is better) Translates to: TPHSARPGCGCPEGG*GRSGQPYPPPPLRP Trigger: AGGACGAAGAGGCGGCGGCGGGTAGGGCTGGCCGCTCCTTCCCCAGCCGCCTTCAGGACAGCCGCAGCCTGGACGGGCTGAGTGGGGCGT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CCA 90 bp | GCCGCTCCAGATCCCTCAGCACGTCCGGGTCGATGGGAGGGATGGTaGGGGTGGGTGCGGGCGTTAGGCAGGGCCGCACAGAGGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: AAPDPSARPGRWEGW*GWVRALGRAAQRQG Trigger: CCCCTGCCTCTGTGCGGCCCTGCCTAACGCCCGCACCCACCCCCACCATCCCTCCCATCGACCCGGACGTGCTGAGGGATCTGGAGCGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 90 bp | CCCGCCGCCGCCTCTTCGTCCTCGTCGTCGTCGTCGTCACCCTCTTaGTGCGGCAGCTCCACATTCATCTCGACGCCTCCGGGGCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: PAAASSSSSSSSSPS*CGSSTFISTPPGLP Trigger: AGGGAGCCCCGGAGGCGTCGAGATGAATGTGGAGCTGCCGCAGCAAGAGGGTGACGACGACGACGACGAGGACGAAGAGGCGGCGGCGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS TCA 90 bp | ACCTCCAGCGTGCGTCGGATATCTCGGACTTGGCGTGCCAGCCCCTaGACCGGTTGCAAAGCCCGTTCCAGCTCCTCGCAGCGCGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: TSSVRRISRTWRASP*TGCKARSSSSQRAS Trigger: ACTTGCGCGCTGCGAGGAGCTGGAACGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGACGCACGCTGGAGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 90 bp | GGCCTCCAACACCTCCAGCGTGCGTCGGATATCTCGGACTTGGCGTaGCAGCCCCTGAACCGGTTGCAAAGCCCGTTCCAGCTCCTCGCA | + |
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Preference number: 5 (lower is better) Translates to: GLQHLQRASDISDLA*QPLNRLQSPFQLLA Trigger: TGCGAGGAGCTGGAACGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGACGCACGCTGGAGGTGTTGGAGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS TCA 90 bp | GCGCCACTCAGTCGGATCTTGAGTTGTAGGTTGTTGGCCACAAAGTaGGTAAGGTCGCCGTGGCGGCTCACCGTGCCCTCCAGCTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: APLSRILSCRLLATK*VRSPWRLTVPSSSR Trigger: CCTAGAGCTGGAGGGCACGGTGAGCCGCCACGGCGACCTTACTCACTTTGTGGCCAACAACCTACAACTCAAGATCCGACTGAGTGGCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CAA 90 bp | GACCATTGGGATCCGGATAGCCGCAGCGGGGCTGAGGTCTCTCTGATCACACATTCGGATATCTCGGACTaGGCGTGCCAGCCCCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: DHWDPDSRSGAEVSLITHSDISD*ACQPLN Trigger: GTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGA...ATGTGTGATCAGAGAGACCTCAGCCCCGCTGCGGCTATCCGGATCCCAATGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CAA 90 bp | GAACCGCTCAAGTTCCTAAAGCCCCTGGCACTTGAGGTGTGTGACCATTGGGATCAACGCTGTCAGCTCTaGCACCGCACCACCCAGCCC | + |
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Preference number: 5 (lower is better) Translates to: EPLKFLKPLALEVCDHWDQRCQL*HRTTQP Trigger: GGGCTGGGTGGTGCGGTGCAAGAGCTGACAGCGTTG...ATCCCAATGGTCACACACCTCAAGTGCCAGGGGCTTTAGGAACTTGAGCGGTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CAA 90 bp | GGTCTCTCTGATCACACATTCGTGTCTGCCCCACCCTCCAGCAGAGATCTAAGGCAGCCCCTGAACCGGTaGCAAAGCCCGTTCCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: GLSDHTFVSAPPSSRDLRQPLNR*QSPFQL Trigger: GAGCTGGAACGGGCTTTGCAACCGGTTCAGGGGCTG...CCTTAGATCTCTGCTGGAGGGTGGGGCAGACACGAATGTGTGATCAGAGAGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS-3UTR CAA 90 bp | GCTGAGGTCTCTCTGATCACACATTCGTGTCTGCCCCACCCTCCAGCAGAGATCCCACTCAGTCGGATCTaGAGTTGTAGGTTGTTGGCC | + |
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Preference number: 5 (lower is better) Translates to: AEVSLITHSCLPHPPAEIPLSRI*SCRLLA Trigger: GGCCAACAACCTACAACTCAAGATCCGACTGAGTGG...GATCTCTGCTGGAGGGTGGGGCAGACACGAATGTGTGATCAGAGAGACCTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CCA 72 bp | TCAGCCCGTCCAGGCTGCGGCTGTCCTGAAGGCGGCTaGGGAAGGAGCGGCCAGCCCTACCCGCCGCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: SARPGCGCPEGG*GRSGQPYPPPP Trigger: AGGCGGCGGCGGGTAGGGCTGGCCGCTCCTTCCCCAGCCGCCTTCAGGACAGCCGCAGCCTGGACGGGCTGA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CCA 72 bp | GACGGCAGACCCTCAGAGCGGAGGGCTGATCCTCGCTaGGCTCCGGCTCCGGGTACCAGGAGGACGGGGGCG | + |
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Preference number: 6 (lower is better) Translates to: DGRPSERRADPR*APAPGTRRTGA Trigger: CGCCCCCGTCCTCCTGGTACCCGGAGCCGGAGCCCAGCGAGGATCAGCCCTCCGCTCTGAGGGTCTGCCGTC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS TCA 72 bp | GCTCTCAGCCTCTTCCTCCCCGGACAGCGTCCGGACTaGGGGCGGCTTCGAGGGCGTTCGGGACGGCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: ALSLFLPGQRPD*GRLRGRSGRPA Trigger: GGCAGGCCGTCCCGAACGCCCTCGAAGCCGCCCTCAGTCCGGACGCTGTCCGGGGAGGAAGAGGCTGAGAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CAA 90 bp | ACCCGCCGCCGCCTCTTCGTCCTCGTCGTCGTCGTCGTCACCCTCTaGCTGCGGCAGCTCCACATTCATCTCGACGCCTCCGGGGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: TRRRLFVLVVVVVTL*LRQLHIHLDASGAP Trigger: GGGAGCCCCGGAGGCGTCGAGATGAATGTGGAGCTGCCGCAGCAAGAGGGTGACGACGACGACGACGAGGACGAAGAGGCGGCGGCGGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CCA 72 bp | CTCCGGCCCATGGGCGATGCTGCCGCTCCAAGTCTTTaGGGACGCTCGGGGATGACGGCTCGAGACCCCAAC | + |
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Preference number: 6 (lower is better) Translates to: LRPMGDAAAPSL*GRSGMTARDPN Trigger: GTTGGGGTCTCGAGCCGTCATCCCCGAGCGTCCCCAAAGACTTGGAGCGGCAGCATCGCCCATGGGCCGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 72 bp | CCTCCCAAGTGTCCAGCTCCGGCCCATGGGCGATGCTaGCGCTCCAAGTCTTTGGGGACGCTCGGGGATGAC | + |
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Preference number: 6 (lower is better) Translates to: PPKCPAPAHGRC*RSKSLGTLGDD Trigger: GTCATCCCCGAGCGTCCCCAAAGACTTGGAGCGGCAGCATCGCCCATGGGCCGGAGCTGGACACTTGGGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CAA 90 bp | GTCGCGGTAGGTCTGGATACAGCCCACACTCAACGCTGTCAGCTCTaGCACCGCACCACCCAGCCCGCGAAGCAGACGGTCTACCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: VAVGLDTAHTQRCQL*HRTTQPAKQTVYPA Trigger: GGCCGGGTAGACCGTCTGCTTCGCGGGCTGGGTGGTGCGGTGCAAGAGCTGACAGCGTTGAGTGTGGGCTGTATCCAGACCTACCGCGAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 72 bp | TGTCCTCCCAAGTGTCCAGCTCCGGCCCATGGGCGATaGTGCCGCTCCAAGTCTTTGGGGACGCTCGGGGAT | + |
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Preference number: 6 (lower is better) Translates to: CPPKCPAPAHGR*CRSKSLGTLGD Trigger: ATCCCCGAGCGTCCCCAAAGACTTGGAGCGGCAGCATCGCCCATGGGCCGGAGCTGGACACTTGGGAGGACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS TCA 72 bp | GTGCGTCGGATATCTCGGACTTGGCGTGCCAGCCCCTaGACCGGTTGCAAAGCCCGTTCCAGCTCCTCGCAG | + |
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Preference number: 6 (lower is better) Translates to: VRRISRTWRASP*TGCKARSSSSQ Trigger: CTGCGAGGAGCTGGAACGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGACGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 72 bp | TCTTCGTCCTCGTCGTCGTCGTCGTCACCCTCTTGCTaGGGCAGCTCCACATTCATCTCGACGCCTCCGGGG | + |
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Preference number: 6 (lower is better) Translates to: SSSSSSSSSPSC*GSSTFISTPPG Trigger: CCCCGGAGGCGTCGAGATGAATGTGGAGCTGCCGCAGCAAGAGGGTGACGACGACGACGACGAGGACGAAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 72 bp | GCCTCTTCGTCCTCGTCGTCGTCGTCGTCACCCTCTTaGTGCGGCAGCTCCACATTCATCTCGACGCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: ASSSSSSSSSPS*CGSSTFISTPP Trigger: CGGAGGCGTCGAGATGAATGTGGAGCTGCCGCAGCAAGAGGGTGACGACGACGACGACGAGGACGAAGAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS GCA 72 bp | CACCTCCAGCGTGCGTCGGATATCTCGGACTTGGCGTaGCAGCCCCTGAACCGGTTGCAAAGCCCGTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: HLQRASDISDLA*QPLNRLQSPFQ Trigger: CTGGAACGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGACGCACGCTGGAGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CAA 72 bp | CGCCTCTTCGTCCTCGTCGTCGTCGTCGTCACCCTCTaGCTGCGGCAGCTCCACATTCATCTCGACGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RLFVLVVVVVTL*LRQLHIHLDAS Trigger: GGAGGCGTCGAGATGAATGTGGAGCTGCCGCAGCAAGAGGGTGACGACGACGACGACGAGGACGAAGAGGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CAA 72 bp | GGTCTGGATACAGCCCACACTCAACGCTGTCAGCTCTaGCACCGCACCACCCAGCCCGCGAAGCAGACGGTC | + |
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Preference number: 6 (lower is better) Translates to: GLDTAHTQRCQL*HRTTQPAKQTV Trigger: GACCGTCTGCTTCGCGGGCTGGGTGGTGCGGTGCAAGAGCTGACAGCGTTGAGTGTGGGCTGTATCCAGACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CAA 72 bp | GATATCTCGGACTTGGCGTGCCAGCCCCTGAACCGGTaGCAAAGCCCGTTCCAGCTCCTCGCAGCGCGCAAG | + |
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Preference number: 6 (lower is better) Translates to: DISDLACQPLNR*QSPFQLLAARK Trigger: CTTGCGCGCTGCGAGGAGCTGGAACGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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| CDS CAA 72 bp | CTCCAACACCTCCAGCGTGCGTCGGATATCTCGGACTaGGCGTGCCAGCCCCTGAACCGGTTGCAAAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: LQHLQRASDISD*ACQPLNRLQSP Trigger: CGGGCTTTGCAACCGGTTCAGGGGCTGGCACGCCAAGTCCGAGATATCCGACGCACGCTGGAGGTGTTGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051888.4 |
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