Pregenerated sensors for BORA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022070Ensembl transcript IDs: ENSMUST00000022656.8, ENSMUST00000227128.2, ENSMUST00000227744.2
Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACTGAGGGCCACCTCTCAGTCTCCGAGGAGACCAGTTTTTGATTaGCGAGCAGCCATCTATGTACGGACTCCTGATGCTCGGGTTAAC | + |
|
Preference number: 1 (lower is better) Translates to: TLRATSQSPRRPVFD*RAAIYVRTPDARVN Trigger: GTTAACCCGAGCATCAGGAGTCCGTACATAGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTCGGAGACTGAGAGGTGGCCCTCAGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 90 bp | TCCGCATCGTCCAGCACTGCTCGCTCTTTCTCAGCAATACCAGAGTaGCTCTGTGTAACAGACATGGCAGTGACAACTCGAGGCTCACCA | + |
|
Preference number: 1 (lower is better) Translates to: SASSSTARSFSAIPE*LCVTDMAVTTRGSP Trigger: TGGTGAGCCTCGAGTTGTCACTGCCATGTCTGTTACACAGAGTCACTCTGGTATTGCTGAGAAAGAGCGAGCAGTGCTGGACGATGCGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 90 bp | TATGCAATGTGTCTGGGTTTGATGGTTGTATATGGGATGGATCCCTaGATGGGGCAGTCTCTGGATGGTCCTTTCTTCCGTCTCAGGTCC | + |
|
Preference number: 1 (lower is better) Translates to: YAMCLGLMVVYGMDP*MGQSLDGPFFRLRS Trigger: GGACCTGAGACGGAAGAAAGGACCATCCAGAGACTGCCCCATTCAGGGATCCATCCCATATACAACCATCAAACCCAGACACATTGCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR GCA 90 bp | CGTGGCAGCCCATGTTCGCCCCTACAGATGGCAGCATTTGGATGGTaGCCAGTAGCACCTTTCTACATTTATAGTGTTCAGAGTATTAAC | + |
|
Preference number: 1 (lower is better) Translates to: RGSPCSPLQMAAFGW*PVAPFYIYSVQSIN Trigger: GTTAATACTCTGAACACTATAAATGTAGAAAGGTGCTACTGGGCACCATCCAAATGCTGCCATCTGTAGGGGCGAACATGGGCTGCCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR TCA 90 bp | ATCCAGCACCGCTGCGCTGTGTGGCCGGGCGTTACGTTATTAACTTaGGATTTCATTTCCACTTCAAAGGGCACTGGAACATTTGTATGT | + |
|
Preference number: 1 (lower is better) Translates to: IQHRCAVWPGVTLLT*DFISTSKGTGTFVC Trigger: ACATACAAATGTTCCAGTGCCCTTTGAAGTGGAAATGAAATCTCAAGTTAATAACGTAACGCCCGGCCACACAGCGCAGCGGTGCTGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CCA 90 bp | TATCGTGGCAGCCCATGTTCGCCCCTACAGATGGCAGCATTTGGATaGTGCCCAGTAGCACCTTTCTACATTTATAGTGTTCAGAGTATT | + |
|
Preference number: 1 (lower is better) Translates to: YRGSPCSPLQMAAFG*CPVAPFYIYSVQSI Trigger: AATACTCTGAACACTATAAATGTAGAAAGGTGCTACTGGGCACCATCCAAATGCTGCCATCTGTAGGGGCGAACATGGGCTGCCACGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR TCA 90 bp | TGCTTTCTGCAAGAGGCGACATGCACATATGAGAGTTTTCAATACTaGAGGCAATTCCACTCGCGGAATCCGTCATGGGTGAATTCCCAT | + |
|
Preference number: 1 (lower is better) Translates to: CFLQEATCTYESFQY*RQFHSRNPSWVNSH Trigger: ATGGGAATTCACCCATGACGGATTCCGCGAGTGGAATTGCCTTCAGTATTGAAAACTCTCATATGTGCATGTCGCCTCTTGCAGAAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CCA 90 bp | AATATGGCTTCCAAATTAAAATCCACAGGAAGAGACAGCAGAGTCTaGCAGGCAGCGTTGCACTTCTGTGAGGGAAGACTTGGCTTTTTC | + |
|
Preference number: 1 (lower is better) Translates to: NMASKLKSTGRDSRV*QAALHFCEGRLGFF Trigger: GAAAAAGCCAAGTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGACTCTGCTGTCTCTTCCTGTGGATTTTAATTTGGAAGCCATATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227128.2 |
||
| 3UTR GCA 90 bp | ATTCATCTGGATAGCACTGCTTTCATAAGGCAGGACACTGCTTTCTaGAAGAGGCGACATGCACATATGAGAGTTTTCAATACTGAAGGC | + |
|
Preference number: 1 (lower is better) Translates to: IHLDSTAFIRQDTAF*KRRHAHMRVFNTEG Trigger: GCCTTCAGTATTGAAAACTCTCATATGTGCATGTCGCCTCTTGCAGAAAGCAGTGTCCTGCCTTATGAAAGCAGTGCTATCCAGATGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 90 bp | TGTAACTCCCTTCATGGGTATTTTATTCCCCATTCTAAGGAGGAATaGAGTATCCACACTTTGGTCTTCCTTCTTGAGTTTCATGTGTTT | + |
|
Preference number: 1 (lower is better) Translates to: CNSLHGYFIPHSKEE*SIHTLVFLLEFHVF Trigger: AAACACATGAAACTCAAGAAGGAAGACCAAAGTGTGGATACTTCATTCCTCCTTAGAATGGGGAATAAAATACCCATGAAGGGAGTTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR GCA 90 bp | ATGTGTTTTGTAAATTGTACCTTGGGTAGTTTCTTGGTTAATATCTaGTTATCAGTGAGTGCATATCATGCGAGTTCTTTTGTGATTGGG | + |
|
Preference number: 1 (lower is better) Translates to: MCFVNCTLGSFLVNI*LSVSAYHASSFVIG Trigger: CCCAATCACAAAAGAACTCGCATGATATGCACTCACTGATAAGCAGATATTAACCAAGAAACTACCCAAGGTACAATTTACAAAACACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | CAGTTCATTGACCCTGTAGGACAGGAGAAAGCCATGAGGTCTGCCATAATTTACAGTAGGCACAGTACGTaGAGCAGGCACCCATCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: QFIDPVGQEKAMRSAIIYSRHST*SRHPSA Trigger: TGCTGATGGGTGCCTGCTTCACGTACTGTGCCTACT...GTAAATTATGGCAGACCTCATGGCTTTCTCCTGTCCTACAGGGTCAATGAACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR CAA 90 bp | AAATTAAAATCCACAGGAAGAGACAGCAGAGTCTGGCAGGCAGCGTaGCACTTCTGTGAGGGAAGACTTGGCTTTTTCCCATCAGGAGAG | + |
|
Preference number: 2 (lower is better) Translates to: KLKSTGRDSRVWQAA*HFCEGRLGFFPSGE Trigger: CTCTCCTGATGGGAAAAAGCCAAGTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGACTCTGCTGTCTCTTCCTGTGGATTTTAATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227128.2 |
||
| 3UTR CAA 90 bp | CATCCAGCACCGCTGCGCTGTGTGGCCGGGCGTTACGTTATTAACTaGAGATTTCATTTCCACTTCAAAGGGCACTGGAACATTTGTATG | + |
|
Preference number: 2 (lower is better) Translates to: HPAPLRCVAGRYVIN*RFHFHFKGHWNICM Trigger: CATACAAATGTTCCAGTGCCCTTTGAAGTGGAAATGAAATCTCAAGTTAATAACGTAACGCCCGGCCACACAGCGCAGCGGTGCTGGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | GCAGGAAACGTCCGCCTCTTCATCTTCACTGTGAGCCTCAAGGGTAAAAGGTATTCTGTATCAGGGTCCTaGCAGCTAAATTTTGCTTGC | + |
|
Preference number: 2 (lower is better) Translates to: AGNVRLFIFTVSLKGKRYSVSGS*QLNFAC Trigger: GCAAGCAAAATTTAGCTGTCAGGACCCTGATACAGA...ATACCTTTTACCCTTGAGGCTCACAGTGAAGATGAAGAGGCGGACGTTTCCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | GAATTCCCATCATCCACTGGCTCTTTTATCCACGTGCTTTCAGCTACTGTGTCTGAGGAGACCAGTTTTTaGTTGGCGAGCAGCCATCTA | + |
|
Preference number: 2 (lower is better) Translates to: EFPSSTGSFIHVLSATVSEETSF*LASSHL Trigger: TAGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTC...AGACACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGGGAATTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR GCA 90 bp | GGAGACCAGTTTTTGATTGGCGAGCAGCCATCTATGTACGGACTCCTGATGCTCCAGCTAAATTTTGCTTaGGTATGCAATGTGTCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: GDQFLIGEQPSMYGLLMLQLNFA*VCNVSG Trigger: CCCAGACACATTGCATACGCAAGCAAAATTTAGCTG...GAGCATCAGGAGTCCGTACATAGATGGCTGCTCGCCAATCAAAAACTGGTCTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CAA 90 bp | TATGTCCAATTTTCTGAGGAACCGCCAGAATTATTTCCAGAGTGGTaGTACACGCTTGCAGTCCCACCAACAATGGAGGAGTATCCCTCT | + |
|
Preference number: 2 (lower is better) Translates to: YVQFSEEPPELFPEW*YTLAVPPTMEEYPS Trigger: AGAGGGATACTCCTCCATTGTTGGTGGGACTGCAAGCGTGTACAACCACTCTGGAAATAATTCTGGCGGTTCCTCAGAAAATTGGACATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | CCATCATCCACTGGCTCTTTTATCCACGTGCTTTCAGCTACTGTGTCTGTAGGACATTCTAAGGAGGAATaGAGTATCCACACTTTGGTC | + |
|
Preference number: 2 (lower is better) Translates to: PSSTGSFIHVLSATVSVGHSKEE*SIHTLV Trigger: GACCAAAGTGTGGATACTTCATTCCTCCTTAGAATG...TCCTACAGACACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR GCA 90 bp | GGATCGACCATATCCACGGTGTCATTTTCCCTCTCACTTTCCGCATCGTCCAGCGAAAGCCATGAGGTCTaGCATAATTTACTTGTTAAA | + |
|
Preference number: 2 (lower is better) Translates to: GSTISTVSFSLSLSASSSESHEV*HNLLVK Trigger: TTTAACAAGTAAATTATGGCAGACCTCATGGCTTTC...GCTGGACGATGCGGAAAGTGAGAGGGAAAATGACACCGTGGATATGGTCGATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR GCA 90 bp | TTGTATATGGGATGGATCCCTGAATGGGGCAGTCTCTGGATGGTCCTTTCTTCCCTGCTTATCAGTGAGTaGATATCATGCGAGTTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: LYMGWIPEWGSLWMVLSSLLISE*ISCEFF Trigger: AAAGAACTCGCATGATATGCACTCACTGATAAGCAG...GGAAGAAAGGACCATCCAGAGACTGCCCCATTCAGGGATCCATCCCATATACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATCCTTTCCCAATCTGTTaGTGGCCTTTTTGTCTTATT | + |
|
Preference number: 2 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYPFPIC*WPFCLI Trigger: AATAAGACAAAAAGGCCACCAACAGATTGGGAAAGG...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | TTGTATATGGGATGGATCCCTGAATGGGGCAGTCTCTGGATGGTCCTTTCTTCCATTTCCCCACAGAAATaGAATTTTAGGGAGTCCATT | + |
|
Preference number: 2 (lower is better) Translates to: LYMGWIPEWGSLWMVLSSISPQK*NFRESI Trigger: AATGGACTCCCTAAAATTTCATTTCTGTGGGGAAAT...GGAAGAAAGGACCATCCAGAGACTGCCCCATTCAGGGATCCATCCCATATACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | CCATCATCCACTGGCTCTTTTATCCACGTGCTTTCAGCTACTGTGTCTGTAGGAATATCTGCTTATCAGTaGGTGCATATCATGCGAGTT | + |
|
Preference number: 2 (lower is better) Translates to: PSSTGSFIHVLSATVSVGISAYQ*VHIMRV Trigger: AACTCGCATGATATGCACTCACTGATAAGCAGATAT...TCCTACAGACACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CCA 90 bp | AACTTTGTCTCTGTAACTCCCTTCATGGGTATTTTATTCCCCATTCTAAGGAGGAGTTGGGACATCTCCTaGGTATGTGTCCAAGAGTGG | + |
|
Preference number: 2 (lower is better) Translates to: NFVSVTPFMGILFPILRRSWDIS*VCVQEW Trigger: CCACTCTTGGACACATACCCAGGAGATGTCCCAACT...CCTCCTTAGAATGGGGAATAAAATACCCATGAAGGGAGTTACAGAGACAAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CAA 90 bp | CTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTaGCCTTACCTTCCAAAGCCTTGCAATTTTATGAGGTCCCATTTG | + |
|
Preference number: 2 (lower is better) Translates to: LSQSVGGLFVLLTVS*PYLPKPCNFMRSHL Trigger: CAAATGGGACCTCATAAAATTGCAAGGCTTTGGAAGGTAAGGCAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR TCA 90 bp | CCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTAGTAGGCACAGTACGTaGAGCAGGCACCCATCAGCA | + |
|
Preference number: 2 (lower is better) Translates to: PFPHFSHVPRTDKFKTTISRHST*SRHPSA Trigger: TGCTGATGGGTGCCTGCTTCACGTACTGTGCCTACT...AATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR-3UTR CCA 90 bp | CAGTTCATTGACCCTGTAGGACAGGAGAAAGCCATGAGGTCTGCCATAATTTACAAGTTTCAGTGTCTCTaGTTTTATGTGGAGTTCCTT | + |
|
Preference number: 2 (lower is better) Translates to: QFIDPVGQEKAMRSAIIYKFQCL*FYVEFL Trigger: AAGGAACTCCACATAAAACCAGAGACACTGAAACTT...GTAAATTATGGCAGACCTCATGGCTTTCTCCTGTCCTACAGGGTCAATGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CCA 90 bp | TTCATGGGTATTTTATTCCCCATTCTAAGGAGGAATGAAGTATCCACACTTTGGCTTAGCCATTCTGACTaGTGTGAGTTGGAATCTCAG | + |
|
Preference number: 2 (lower is better) Translates to: FMGILFPILRRNEVSTLWLSHSD*CELESQ Trigger: CTGAGATTCCAACTCACACCAGTCAGAATGGCTAAG...CCAAAGTGTGGATACTTCATTCCTCCTTAGAATGGGGAATAAAATACCCATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CAA 90 bp | CCTTTTTGTCTTATTGACGGTGTCTTTGCCTTACCTTCCAAAGCCTaGCAATTTTATGAGGTCCCATTTGATTCCCAATCTTACAGCATA | + |
|
Preference number: 2 (lower is better) Translates to: PFCLIDGVFALPSKA*QFYEVPFDSQSYSI Trigger: TATGCTGTAAGATTGGGAATCAAATGGGACCTCATAAAATTGCAAGGCTTTGGAAGGTAAGGCAAAGACACCGTCAATAAGACAAAAAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR GCA 90 bp | CCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTGGAAGTTTTCCCCTGTaGCCATATCTTCGAGACTCT | + |
|
Preference number: 2 (lower is better) Translates to: PFPHFSHVPRTDKFKTTIGSFPL*PYLRDS Trigger: AGAGTCTCGAAGATATGGGCACAGGGGAAAACTTCC...AATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CAA 90 bp | TCCACTTCAAAGGGCACTGGAACATTTGTATGTGTGACATTTTCTTaGCAATATCTTTCTGTCCCAACAATATCAGTGATATTACTTACA | + |
|
Preference number: 2 (lower is better) Translates to: STSKGTGTFVCVTFS*QYLSVPTISVILLT Trigger: TGTAAGTAATATCACTGATATTGTTGGGACAGAAAGATATTGCAAAGAAAATGTCACACATACAAATGTTCCAGTGCCCTTTGAAGTGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR GCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCGAAAGCCATGAGGTCTaGCATAATTTACTTGTTAAA | + |
|
Preference number: 2 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTESHEV*HNLLVK Trigger: TTTAACAAGTAAATTATGGCAGACCTCATGGCTTTC...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | AGGGTAAAAGGTATGCGGACCAGGGAGGACAAACACTaGGGGCCACCTCTCAGTCTCCGAGGAGACCAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: RVKGMRTREDKH*GPPLSLRGDQF Trigger: AAACTGGTCTCCTCGGAGACTGAGAGGTGGCCCTCAGTGTTTGTCCTCCCTGGTCCGCATACCTTTTACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | CCTGTGCAGGAAACGTCCGCCTCTTCATCTTCACTGTaGGCCTCAAGGGTAAAAGGTATGCGGACCAGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: PVQETSASSSSL*ASRVKGMRTRE Trigger: CTCCCTGGTCCGCATACCTTTTACCCTTGAGGCTCACAGTGAAGATGAAGAGGCGGACGTTTCCTGCACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | AGACAGCAGAGTCTGGCAGGCAGCGTTGCACTTCTGTaGGGGAAGACTTGGCTTTTTCCCATCAGGAGAGTC | + |
|
Preference number: 3 (lower is better) Translates to: RQQSLAGSVALL*GKTWLFPIRRV Trigger: GACTCTCCTGATGGGAAAAAGCCAAGTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGACTCTGCTGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227128.2 |
||
| 3UTR CCA 72 bp | GCCACCTCTCAGTCTCCGAGGAGACCAGTTTTTGATTaGCGAGCAGCCATCTATGTACGGACTCCTGATGCT | + |
|
Preference number: 3 (lower is better) Translates to: ATSQSPRRPVFD*RAAIYVRTPDA Trigger: AGCATCAGGAGTCCGTACATAGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTCGGAGACTGAGAGGTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CCA 72 bp | CAGAGTGGTTGTACACGCTTGCAGTCCCACCAACAATaGAGGAGTATCCCTCTTTCTCTACATCCTCGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: QSGCTRLQSHQQ*RSIPLSLHPRQ Trigger: CTGGCGAGGATGTAGAGAAAGAGGGATACTCCTCCATTGTTGGTGGGACTGCAAGCGTGTACAACCACTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | TGTCTGGGTTTGATGGTTGTATATGGGATGGATCCCTaGATGGGGCAGTCTCTGGATGGTCCTTTCTTCCGT | + |
|
Preference number: 3 (lower is better) Translates to: CLGLMVVYGMDP*MGQSLDGPFFR Trigger: ACGGAAGAAAGGACCATCCAGAGACTGCCCCATTCAGGGATCCATCCCATATACAACCATCAAACCCAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | TCCAGCACTGCTCGCTCTTTCTCAGCAATACCAGAGTaGCTCTGTGTAACAGACATGGCAGTGACAACTCGA | + |
|
Preference number: 3 (lower is better) Translates to: SSTARSFSAIPE*LCVTDMAVTTR Trigger: TCGAGTTGTCACTGCCATGTCTGTTACACAGAGTCACTCTGGTATTGCTGAGAAAGAGCGAGCAGTGCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | ACTGAAGGCAATTCCACTCGCGGAATCCGTCATGGGTaGATTCCCATCATCCACTGGCTCTTTTATCCACGT | + |
|
Preference number: 3 (lower is better) Translates to: TEGNSTRGIRHG*IPIIHWLFYPR Trigger: ACGTGGATAAAAGAGCCAGTGGATGATGGGAATTCACCCATGACGGATTCCGCGAGTGGAATTGCCTTCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CCA 72 bp | TGCGTATGCAATGTGTCTGGGTTTGATGGTTGTATATaGGATGGATCCCTGAATGGGGCAGTCTCTGGATGG | + |
|
Preference number: 3 (lower is better) Translates to: CVCNVSGFDGCI*DGSLNGAVSGW Trigger: CCATCCAGAGACTGCCCCATTCAGGGATCCATCCCATATACAACCATCAAACCCAGACACATTGCATACGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCATATCCACGGTGTCATTTTCCCTCTCACTTTCCGCATCGTCCAGCACTGCTTCTGACTGGTGTGAGTaGGAATCTCAGGGTTGTTTT | + |
|
Preference number: 3 (lower is better) Translates to: TISTVSFSLSLSASSSTASDWCE*ESQGCF Trigger: AAAACAACCCTGAGATTCCAACTCACACCAGTCAGA...AGCAGTGCTGGACGATGCGGAAAGTGAGAGGGAAAATGACACCGTGGATATGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | GCAGGAAACGTCCGCCTCTTCATCTTCACTGTGAGCCTCAAGGGTAAAAGGTATTTATTTCCAGAGTGGTaGTACACGCTTGCAGTCCCA | + |
|
Preference number: 3 (lower is better) Translates to: AGNVRLFIFTVSLKGKRYLFPEW*YTLAVP Trigger: TGGGACTGCAAGCGTGTACAACCACTCTGGAAATAA...ATACCTTTTACCCTTGAGGCTCACAGTGAAGATGAAGAGGCGGACGTTTCCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | CAAGAGGCGACATGCACATATGAGAGTTTTCAATACTaGAGGCAATTCCACTCGCGGAATCCGTCATGGGTG | + |
|
Preference number: 3 (lower is better) Translates to: QEATCTYESFQY*RQFHSRNPSWV Trigger: CACCCATGACGGATTCCGCGAGTGGAATTGCCTTCAGTATTGAAAACTCTCATATGTGCATGTCGCCTCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR GCA 72 bp | CCATGTTCGCCCCTACAGATGGCAGCATTTGGATGGTaGCCAGTAGCACCTTTCTACATTTATAGTGTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: PCSPLQMAAFGW*PVAPFYIYSVQ Trigger: CTGAACACTATAAATGTAGAAAGGTGCTACTGGGCACCATCCAAATGCTGCCATCTGTAGGGGCGAACATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCATATCCACGGTGTCATTTTCCCTCTCACTTTCCGCATCGTCCAGCACTGCTCTTTGGTCTTCCTTCTaGAGTTTCATGTGTTTTGTA | + |
|
Preference number: 3 (lower is better) Translates to: TISTVSFSLSLSASSSTALWSSF*SFMCFV Trigger: TACAAAACACATGAAACTCAAGAAGGAAGACCAAAG...AGCAGTGCTGGACGATGCGGAAAGTGAGAGGGAAAATGACACCGTGGATATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | TCTTTCTCTACATCCTCGCCAGCATCTGCTGTCACCTaGATTTTTGATCTTAGCCATTCTGACTGGTGTGAG | + |
|
Preference number: 3 (lower is better) Translates to: SFSTSSPASAVT*IFDLSHSDWCE Trigger: CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTAGAGAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | GCAGGAAACGTCCGCCTCTTCATCTTCACTGTGAGCCTCAAGGGTAAAAGGTATTTTGGTGTTCCTCAGTaGAGAATTCTTTGTTTAGCT | + |
|
Preference number: 3 (lower is better) Translates to: AGNVRLFIFTVSLKGKRYFGVPQ*RILCLA Trigger: AGCTAAACAAAGAATTCTCAACTGAGGAACACCAAA...ATACCTTTTACCCTTGAGGCTCACAGTGAAGATGAAGAGGCGGACGTTTCCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | TTGTATATGGGATGGATCCCTGAATGGGGCAGTCTCTGGATGGTCCTTTCTTCCTTGAGCAGTACTCCATaGTGTAAATGTACCACATTT | + |
|
Preference number: 3 (lower is better) Translates to: LYMGWIPEWGSLWMVLSSLSSTP*CKCTTF Trigger: AAATGTGGTACATTTACACAATGGAGTACTGCTCAA...GGAAGAAAGGACCATCCAGAGACTGCCCCATTCAGGGATCCATCCCATATACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR GCA 72 bp | GATAGCACTGCTTTCATAAGGCAGGACACTGCTTTCTaGAAGAGGCGACATGCACATATGAGAGTTTTCAAT | + |
|
Preference number: 3 (lower is better) Translates to: DSTAFIRQDTAF*KRRHAHMRVFN Trigger: ATTGAAAACTCTCATATGTGCATGTCGCCTCTTGCAGAAAGCAGTGTCCTGCCTTATGAAAGCAGTGCTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | CCTCTTTCTCTACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTATCAGTTGAGAATTCTTaGTTTAGCTCTGAGCCCCAT | + |
|
Preference number: 3 (lower is better) Translates to: PLSLHPRQHLLSPEFLILSVENS*FSSEPH Trigger: ATGGGGCTCAGAGCTAAACAAAGAATTCTCAACTGA...TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTAGAGAAAGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | GAATTCCCATCATCCACTGGCTCTTTTATCCACGTGCTTTCAGCTACTGTGTCTATAGTGGAGCATGTGTaGTTATTACAAGTTGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: EFPSSTGSFIHVLSATVSIVEHV*LLQVGT Trigger: TGTCCCAACTTGTAATAACAACACATGCTCCACTAT...AGACACAGTAGCTGAAAGCACGTGGATAAAAGAGCCAGTGGATGATGGGAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | GCGAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATaGTACTCTCCAGATACATCCATTTGCCTAAGAATT | + |
|
Preference number: 3 (lower is better) Translates to: ASSFVIGLPHSG*YSPDTSICLRI Trigger: AATTCTTAGGCAAATGGATGTATCTGGAGAGTATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | AACTTTGTCTCTGTAACTCCCTTCATGGGTATTTTATTCCCCATTCTAAGGAGGTCCTTTCCCAATCTGTaGGTGGCCTTTTTGTCTTAT | + |
|
Preference number: 3 (lower is better) Translates to: NFVSVTPFMGILFPILRRSFPNL*VAFLSY Trigger: ATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGA...CCTCCTTAGAATGGGGAATAAAATACCCATGAAGGGAGTTACAGAGACAAAGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | AACTTTGTCTCTGTAACTCCCTTCATGGGTATTTTATTCCCCATTCTAAGGAGGTGTTGTTATTACAAGTaGGGACATCTCCTGGGTATG | + |
|
Preference number: 3 (lower is better) Translates to: NFVSVTPFMGILFPILRRCCYYK*GHLLGM Trigger: CATACCCAGGAGATGTCCCAACTTGTAATAACAACA...CCTCCTTAGAATGGGGAATAAAATACCCATGAAGGGAGTTACAGAGACAAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | CTTCATGGGTATTTTATTCCCCATTCTAAGGAGGAATaGAGTATCCACACTTTGGTCTTCCTTCTTGAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: LHGYFIPHSKEE*SIHTLVFLLEF Trigger: AAACTCAAGAAGGAAGACCAAAGTGTGGATACTTCATTCCTCCTTAGAATGGGGAATAAAATACCCATGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR TCA 72 bp | TTTCCACTTCAAAGGGCACTGGAACATTTGTATGTGTaGCATTTTCTTTGCAATATCTTTCTGTCCCAACAA | + |
|
Preference number: 3 (lower is better) Translates to: FPLQRALEHLYV*HFLCNIFLSQQ Trigger: TTGTTGGGACAGAAAGATATTGCAAAGAAAATGTCACACATACAAATGTTCCAGTGCCCTTTGAAGTGGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR-3UTR CAA 90 bp | CGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTCCTATCTGATTTAGGATaGGTAAAGATCCTTTCCCAA | + |
|
Preference number: 3 (lower is better) Translates to: RFHIFLMFLELINSRLPFLSDLG*VKILSQ Trigger: TTGGGAAAGGATCTTTACCAATCCTAAATCAGATAG...GAATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR GCA 72 bp | GTAAATTGTACCTTGGGTAGTTTCTTGGTTAATATCTaGTTATCAGTGAGTGCATATCATGCGAGTTCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: VNCTLGSFLVNI*LSVSAYHASSF Trigger: AAAAGAACTCGCATGATATGCACTCACTGATAAGCAGATATTAACCAAGAAACTACCCAAGGTACAATTTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATAAGCTTCCTGGGTTCTaGGAGCGGCGTCTTTCCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYKLPGF*ERRLSS Trigger: GGAGGAAAGACGCCGCTCTCAGAACCCAGGAAGCTT...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| 3UTR CAA 72 bp | TCTGGCAGGCAGCGTTGCACTTCTGTGAGGGAAGACTaGGCTTTTTCCCATCAGGAGAGTCATCATGGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SGRQRCTSVRED*AFSHQESHHGY Trigger: GTAGCCATGATGACTCTCCTGATGGGAAAAAGCCAAGTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227128.2 |
||
| CDS-3UTR TCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATGGCGTCTTTCCTCCTTaGAGTGCGATAGGTGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYGVFPP*SAIGEK Trigger: CTTCTCACCTATCGCACTTCAAGGAGGAAAGACGCC...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR GCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCGCGACCCCCGGGCACTaGAGGGAGGACTTCCGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTATPGH*REDFRA Trigger: CGCCCGGAAGTCCTCCCTGCAGTGCCCGGGGGTCGC...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATACTGGGATGAAGCTCTaGAGGCTGTTTTCCATCATG | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYTGMKL*RLFSIM Trigger: CATGATGGAAAACAGCCTTCAGAGCTTCATCCCAGT...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATCTTTCTTCTCAGAGATaGAGAACTGAGGTTCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYLSSQR*RTEVPR Trigger: CCTGGGAACCTCAGTTCTTCATCTCTGAGAAGAAAG...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR GCA 90 bp | ATGGCAGCATTTGGATGGTGCCCAGTAGCACCTTTCTACATTTATAGTGTTCAGTCTGGCAGGCAGCGTTaGACTTCTGTGAGGGAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: MAAFGWCPVAPFYIYSVQSGRQR*TSVRED Trigger: GTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGA...CTGAACACTATAAATGTAGAAAGGTGCTACTGGGCACCATCCAAATGCTGCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATTGTTCTGAATGGGGCTaGAAGAAAACTGTCCCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYCSEWG*KKTVPR Trigger: TCGAGGGACAGTTTTCTTCCAGCCCCATTCAGAACA...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR CAA 72 bp | TTTTCTGAGGAACCGCCAGAATTATTTCCAGAGTGGTaGTACACGCTTGCAGTCCCACCAACAATGGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: FSEEPPELFPEW*YTLAVPPTMEE Trigger: CTCCTCCATTGTTGGTGGGACTGCAAGCGTGTACAACCACTCTGGAAATAATTCTGGCGGTTCCTCAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR GCA 90 bp | CCTGTAGGACAGGAGAAAGCCATGAGGTCTGCCATAATTTACTTGTTAAACAAGTCTGGCAGGCAGCGTTaGACTTCTGTGAGGGAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: PVGQEKAMRSAIIYLLNKSGRQR*TSVRED Trigger: GTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGA...CTTGTTTAACAAGTAAATTATGGCAGACCTCATGGCTTTCTCCTGTCCTACAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR GCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATGCAAAGGGTCACAGATaGTTCCATTCCCATCCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYAKGHR*FHSHPK Trigger: TTTTGGATGGGAATGGAAGCATCTGTGACCCTTTGC...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | GAGGAACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGGGCGTCTTTCCTCCTTaGAGTGCGATAGGTGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: EEHLGSFQLLAIINKAAMGVFPP*SAIGEK Trigger: CTTCTCACCTATCGCACTTCAAGGAGGAAAGACGCC...CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTTCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CCTGTAGGACAGGAGAAAGCCATGAGGTCTGCCATAATTTACTTGTTAAACAAGGGAATCCGTCATGGGTaGATTCCCATCATCCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: PVGQEKAMRSAIIYLLNKGIRHG*IPIIHW Trigger: CCAGTGGATGATGGGAATTCACCCATGACGGATTCC...CTTGTTTAACAAGTAAATTATGGCAGACCTCATGGCTTTCTCCTGTCCTACAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR TCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATGGCGACATGCACATATaGGAGTTTTCAATACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYGDMHI*EFSILK Trigger: CTTCAGTATTGAAAACTCTCATATGTGCATGTCGCC...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR CCA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATTCAGGAGAGTCATCATaGCTACTTAGGCATTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYSGESS*LLRHLL Trigger: CAGTAAATGCCTAAGTAGCCATGATGACTCTCCTGA...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | TTTAACAACTTGGAGTTTCTGGTCCTAGCACCAATTTCCTTTGCAGCCTTTCACAGGTTCCCAGGAGTGTaGGCCACAAAGTCCTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FNNLEFLVLAPISFAAFHRFPGV*ATKSSS Trigger: AGAAGAGGACTTTGTGGCCCACACTCCTGGGAACCT...GTGAAAGGCTGCAAAGGAAATTGGTGCTAGGACCAGAAACTCCAAGTTGTTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | TTCATGGGTATTTTATTCCCCATTCTAAGGAGGAATGAAGTATCCACACTTTGGGGCTGTTTTCCATCATaGTCAGTCCAGGGAGAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: FMGILFPILRRNEVSTLWGCFPS*SVQGEG Trigger: GCCCTCTCCCTGGACTGATCATGATGGAAAACAGCC...CCAAAGTGTGGATACTTCATTCCTCCTTAGAATGGGGAATAAAATACCCATGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | AACTTTGTCTCTGTAACTCCCTTCATGGGTATTTTATTCCCCATTCTAAGGAGGAGGTTCCCAGGAGTGTaGGCCACAAAGTCCTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: NFVSVTPFMGILFPILRRRFPGV*ATKSSS Trigger: AGAAGAGGACTTTGTGGCCCACACTCCTGGGAACCT...CCTCCTTAGAATGGGGAATAAAATACCCATGAAGGGAGTTACAGAGACAAAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | TTTAACAACTTGGAGTTTCTGGTCCTAGCACCAATTTCCTTTGCAGCCTTTCACTCGCGGAATCCGTCATaGGTGAATTCCCATCATCCA | + |
|
Preference number: 4 (lower is better) Translates to: FNNLEFLVLAPISFAAFHSRNPS*VNSHHP Trigger: TGGATGATGGGAATTCACCCATGACGGATTCCGCGA...GTGAAAGGCTGCAAAGGAAATTGGTGCTAGGACCAGAAACTCCAAGTTGTTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| 3UTR CAA 72 bp | CTACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTaGATCTTAGCCATTCTGACTGGTGTGAGTTGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: LHPRQHLLSPEF*ILAILTGVSWN Trigger: ATTCCAACTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTAGGGAGGACAAACACTaGGGGCCACCTCTCAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: PFPHFSHVPRTDKFKTTIREDKH*GPPLSL Trigger: GAGACTGAGAGGTGGCCCTCAGTGTTTGTCCTCCCT...AATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR GCA 90 bp | CAGTTCATTGACCCTGTAGGACAGGAGAAAGCCATGAGGTCTGCCATAATTTACCTGCAAGAGGCGACATaGACATATGAGAGTTTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: QFIDPVGQEKAMRSAIIYLQEAT*TYESFQ Trigger: TTGAAAACTCTCATATGTGCATGTCGCCTCTTGCAG...GTAAATTATGGCAGACCTCATGGCTTTCTCCTGTCCTACAGGGTCAATGAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR CCA 90 bp | ATGGCAGCATTTGGATGGTGCCCAGTAGCACCTTTCTACATTTATAGTGTTCAGTCACACTGTTCTGAATaGGGCTGGAAGAAAACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: MAAFGWCPVAPFYIYSVQSHCSE*GWKKTV Trigger: GACAGTTTTCTTCCAGCCCCATTCAGAACAGTGTGA...CTGAACACTATAAATGTAGAAAGGTGCTACTGGGCACCATCCAAATGCTGCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCGGCTGTTTTCCATCATaGTCAGTCCAGGGAGAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTGCFPS*SVQGEG Trigger: GCCCTCTCCCTGGACTGATCATGATGGAAAACAGCC...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | ATGGCAGCATTTGGATGGTGCCCAGTAGCACCTTTCTACATTTATAGTGTTCAGTCAGGAGAGTCATCATaGCTACTTAGGCATTTACTG | + |
|
Preference number: 4 (lower is better) Translates to: MAAFGWCPVAPFYIYSVQSGESS*LLRHLL Trigger: CAGTAAATGCCTAAGTAGCCATGATGACTCTCCTGA...CTGAACACTATAAATGTAGAAAGGTGCTACTGGGCACCATCCAAATGCTGCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| 3UTR CAA 72 bp | TCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTaGCCTTACCTTCCAAAGCCTTGCAATTTTATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SVGGLFVLLTVS*PYLPKPCNFMR Trigger: CCTCATAAAATTGCAAGGCTTTGGAAGGTAAGGCAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | TTCATGGGTATTTTATTCCCCATTCTAAGGAGGAATGAAGTATCCACACTTTGGACTGGGATGAAGCTCTaGAGGCTGTTTTCCATCATG | + |
|
Preference number: 4 (lower is better) Translates to: FMGILFPILRRNEVSTLWTGMKL*RLFSIM Trigger: CATGATGGAAAACAGCCTTCAGAGCTTCATCCCAGT...CCAAAGTGTGGATACTTCATTCCTCCTTAGAATGGGGAATAAAATACCCATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCTCAGAGATGAAGAACTaGGGTTCCCAGGAGTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTSEMKN*GSQECG Trigger: CCCACACTCCTGGGAACCTCAGTTCTTCATCTCTGA...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | TTTAACAACTTGGAGTTTCTGGTCCTAGCACCAATTTCCTTTGCAGCCTTTCACCACTTCAAAGGGCACTaGAACATTTGTATGTGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: FNNLEFLVLAPISFAAFHHFKGH*NICMCD Trigger: GTCACACATACAAATGTTCCAGTGCCCTTTGAAGTG...GTGAAAGGCTGCAAAGGAAATTGGTGCTAGGACCAGAAACTCCAAGTTGTTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| 3UTR CAA 72 bp | CTTATTGACGGTGTCTTTGCCTTACCTTCCAAAGCCTaGCAATTTTATGAGGTCCCATTTGATTCCCAATCT | + |
|
Preference number: 4 (lower is better) Translates to: LIDGVFALPSKA*QFYEVPFDSQS Trigger: AGATTGGGAATCAAATGGGACCTCATAAAATTGCAAGGCTTTGGAAGGTAAGGCAAAGACACCGTCAATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTCGAGGAGACCAGTTTTTaGTTGGCGAGCAGCCATCTA | + |
|
Preference number: 4 (lower is better) Translates to: RFHIFLMFLELINSRLPFEETSF*LASSHL Trigger: TAGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTC...GAATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR GCA 90 bp | CGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTCCAGGACACTGCTTTCTaGAAGAGGCGACATGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: RFHIFLMFLELINSRLPFQDTAF*KRRHAH Trigger: ATGTGCATGTCGCCTCTTGCAGAAAGCAGTGTCCTG...GAATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR GCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCCATAAGGCAGGACACTaGTTTCTGCAAGAGGCGACA | + |
|
Preference number: 4 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTHKAGH*FLQEAT Trigger: TGTCGCCTCTTGCAGAAAGCAGTGTCCTGCCTTATG...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR CCA 90 bp | TTCATGGGTATTTTATTCCCCATTCTAAGGAGGAATGAAGTATCCACACTTTGGTCACACTGTTCTGAATaGGGCTGGAAGAAAACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FMGILFPILRRNEVSTLWSHCSE*GWKKTV Trigger: GACAGTTTTCTTCCAGCCCCATTCAGAACAGTGTGA...CCAAAGTGTGGATACTTCATTCCTCCTTAGAATGGGGAATAAAATACCCATGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | CGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTCCTTTCTTCTCAGAGATaGAGAACTGAGGTTCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RFHIFLMFLELINSRLPFLSSQR*RTEVPR Trigger: CCTGGGAACCTCAGTTCTTCATCTCTGAGAAGAAAG...GAATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR TCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCGAGAGTTTTCAATACTaGAGGCAATTCCACTCGCGG | + |
|
Preference number: 4 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTESFQY*RQFHSR Trigger: CCGCGAGTGGAATTGCCTTCAGTATTGAAAACTCTC...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR GCA 90 bp | CCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTGCAAAGGGTCACAGATaGTTCCATTCCCATCCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: PFPHFSHVPRTDKFKTTIAKGHR*FHSHPK Trigger: TTTTGGATGGGAATGGAAGCATCTGTGACCCTTTGC...AATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CCA 90 bp | ATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCAGACCAGTTTTTGATTaGCGAGCAGCCATCTATGTA | + |
|
Preference number: 4 (lower is better) Translates to: IPFPHFSHVPRTDKFKTTRPVFD*RAAIYV Trigger: TACATAGATGGCTGCTCGCCAATCAAAAACTGGTCT...GGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| 3UTR CAA 72 bp | TATATATTGGATATTAGTCCCCTATCTGATTTAGGATaGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: YILDISPLSDLG*VKILSQSVGGL Trigger: AAGGCCACCAACAGATTGGGAAAGGATCTTTACCAATCCTAAATCAGATAGGGGACTAATATCCAATATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| 3UTR CAA 72 bp | TCCTTCTTGAGTTTCATGTGTTTTGTAAATTGTACCTaGGGTAGTTTCTTGGTTAATATCTGCTTATCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: SFLSFMCFVNCT*GSFLVNICLSV Trigger: CACTGATAAGCAGATATTAACCAAGAAACTACCCAAGGTACAATTTACAAAACACATGAAACTCAAGAAGGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS GCA 90 bp | TGCAGGGAGGACTTCCGGGCGACGGCGAAGGCAAAGGGTCACAGATaGTTCCATTCCCATCCAAAAAGAGCTTTCTTCTCAGAGATGAAG | + |
|
Preference number: 5 (lower is better) Translates to: CREDFRATAKAKGHR*FHSHPKRAFFSEMK Trigger: CTTCATCTCTGAGAAGAAAGCTCTTTTTGGATGGGAATGGAAGCATCTGTGACCCTTTGCCTTCGCCGTCGCCCGGAAGTCCTCCCTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CAA 90 bp | GAGGAACATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGTCTGTGAGGGAAGACTaGGCTTTTTCCCATCAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: EEHLGSFQLLAIINKAAMSVRED*AFSHQE Trigger: CTCCTGATGGGAAAAAGCCAAGTCTTCCCTCACAGA...CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTTCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000227744.2 |
||
| CDS TCA 90 bp | TGGATCTCCTCTGGATCGATCTCTACAGGGTTTATTATGGCCAGCTaGTCAATAGACCACCTAAATTTCCCTGGAGTTGGTAGTTTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: WISSGSISTGFIMAS*SIDHLNFPGVGSFV Trigger: CACAAAACTACCAACTCCAGGGAAATTTAGGTGGTCTATTGATCAGCTGGCCATAATAAACCCTGTAGAGATCGATCCAGAGGAGATCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022656.8 ENSMUST00000227128.2 ENSMUST00000227744.2 |
||
| CDS-3UTR CAA 90 bp | CTGCTGTGTTCTGTTCATCTCCCCACCAAGCCTAGGAATGGAGGTACATGCTATTGTGTGACATTTTCTTaGCAATATCTTTCTGTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: LLCSVHLPTKPRNGGTCYCVTFS*QYLSVP Trigger: TGGGACAGAAAGATATTGCAAAGAAAATGTCACACA...ATAGCATGTACCTCCATTCCTAGGCTTGGTGGGGAGATGAACAGAACACAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR CAA 90 bp | CCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTCGAGGAGACCAGTTTTaGATTGGCGAGCAGCCATCT | + |
|
Preference number: 5 (lower is better) Translates to: PFPHFSHVPRTDKFKTTIRGDQF*IGEQPS Trigger: AGATGGCTGCTCGCCAATCAAAAACTGGTCTCCTCG...AATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS-3UTR CAA 90 bp | CCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTTCTGTGAGGGAAGACTaGGCTTTTTCCCATCAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: PFPHFSHVPRTDKFKTTISVRED*AFSHQE Trigger: CTCCTGATGGGAAAAAGCCAAGTCTTCCCTCACAGA...AATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CAA 90 bp | CGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTACCATTCAGGACTAGCAAGGGTTaGTTCATGGAGATTAGAATA | + |
|
Preference number: 5 (lower is better) Translates to: RFHIFLMFLELINSRLPFRTSKG*FMEIRI Trigger: TATTCTAATCTCCATGAACAAACCCTTGCTAGTCCT...GAATGGTAGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS-3UTR CAA 90 bp | TGCATTCCGTTTCCACATTTTTCTCATGTTCCTAGAACTGATAAATTCAAGACTAGGACTAGCAAGGGTTaGTTCATGGAGATTAGAATA | + |
|
Preference number: 5 (lower is better) Translates to: CIPFPHFSHVPRTDKFKTRTSKG*FMEIRI Trigger: TATTCTAATCTCCATGAACAAACCCTTGCTAGTCCT...AGTCTTGAATTTATCAGTTCTAGGAACATGAGAAAAATGTGGAAACGGAATGCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS GCA 72 bp | TGGAAGAAAACTGTCCCTCGAGCGACCCCCGGGCACTaGAGGGAGGACTTCCGGGCGACGGCGAAGGCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: WKKTVPRATPGH*REDFRATAKAK Trigger: CTTTGCCTTCGCCGTCGCCCGGAAGTCCTCCCTGCAGTGCCCGGGGGTCGCTCGAGGGACAGTTTTCTTCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS TCA 72 bp | AGCTTCCTGGGTTCTGAGAGCGGCGTCTTTCCTCCTTaGAGTGCGATAGGTGAGAAGGTAGGTGAGGAGATG | + |
|
Preference number: 6 (lower is better) Translates to: SFLGSESGVFPP*SAIGEKVGEEM Trigger: CATCTCCTCACCTACCTTCTCACCTATCGCACTTCAAGGAGGAAAGACGCCGCTCTCAGAACCCAGGAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS TCA 72 bp | AGCTTCGGGAGAATGAAACGTAAGCTTCCTGGGTTCTaGGAGCGGCGTCTTTCCTCCTTGAAGTGCGATAGG | + |
|
Preference number: 6 (lower is better) Translates to: SFGRMKRKLPGF*ERRLSSLKCDR Trigger: CCTATCGCACTTCAAGGAGGAAAGACGCCGCTCTCAGAACCCAGGAAGCTTACGTTTCATTCTCCCGAAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022656.8 |
||
| CDS CAA 90 bp | ACAGCAGAGTCTGGCAGGCAGCGTTGCACTTCTGTGAGGGAAGACTaGGCTTTTTCCCATCAGGAGAGTCATCATGGCTACTTAGGCATT | + |
|
Preference number: 6 (lower is better) Translates to: TAESGRQRCTSVRED*AFSHQESHHGYLGI Trigger: AATGCCTAAGTAGCCATGATGACTCTCCTGATGGGAAAAAGCCAAGTCTTCCCTCACAGAAGTGCAACGCTGCCTGCCAGACTCTGCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS TCA 72 bp | TCTGGATCGATCTCTACAGGGTTTATTATGGCCAGCTaGTCAATAGACCACCTAAATTTCCCTGGAGTTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SGSISTGFIMAS*SIDHLNFPGVG Trigger: ACCAACTCCAGGGAAATTTAGGTGGTCTATTGATCAGCTGGCCATAATAAACCCTGTAGAGATCGATCCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000022656.8 ENSMUST00000227128.2 ENSMUST00000227744.2 |
||
| CDS CCA 72 bp | CATCAGGAGAGTCATCATGGCTACTTAGGCATTTACTaGGATGAAGCTCTGAAGGCTGTTTTCCATCATGAT | + |
|
Preference number: 6 (lower is better) Translates to: HQESHHGYLGIY*DEALKAVFHHD Trigger: ATCATGATGGAAAACAGCCTTCAGAGCTTCATCCCAGTAAATGCCTAAGTAGCCATGATGACTCTCCTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022656.8 ENSMUST00000227744.2 |
||
| CDS CAA 72 bp | TTTTGTGGACTTAAAGATAGAAGGACTAGCAAGGGTTaGTTCATGGAGATTAGAATAATCACTGGGACTTTC | + |
|
Preference number: 6 (lower is better) Translates to: FCGLKDRRTSKG*FMEIRIITGTF Trigger: GAAAGTCCCAGTGATTATTCTAATCTCCATGAACAAACCCTTGCTAGTCCTTCTATCTTTAAGTCCACAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000022656.8 ENSMUST00000227128.2 ENSMUST00000227744.2 |
||