Pregenerated sensors for BOLL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025977Ensembl transcript IDs: ENSMUST00000087585.10, ENSMUST00000159564.9, ENSMUST00000161810.2, ENSMUST00000173983.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTaGTCACACAAGGATCAATGGACAAGAAATCAGTTGAGCTGGACT | + |
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Preference number: 1 (lower is better) Translates to: VSQRAASSRFLEAGS*SHKDQWTRNQLSWT Trigger: AGTCCAGCTCAACTGATTTCTTGTCCATTGATCCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| 3UTR TCA 90 bp | AATTGGCTCAGGCTGCATCATAGGTGCAGGCATAGCAATGGCACTTaGAGCATAAACCTGGTGATATGCTGCTTGAACTCCATGGTCAGA | + |
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Preference number: 1 (lower is better) Translates to: NWLRLHHRCRHSNGT*SINLVICCLNSMVR Trigger: TCTGACCATGGAGTTCAAGCAGCATATCACCAGGTTTATGCTTCAAGTGCCATTGCTATGCCTGCACCTATGATGCAGCCTGAGCCAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR TCA 90 bp | AAGAGTCTACTTAACAAAGTCAGTACAGGAAGGTGGAGTGGAAACTaGATCCTCTGCTCTGAAATCTTTTCTAGGATGAAAGTGTGGGCT | + |
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Preference number: 1 (lower is better) Translates to: KSLLNKVSTGRWSGN*ILCSEIFSRMKVWA Trigger: AGCCCACACTTTCATCCTAGAAAAGATTTCAGAGCAGAGGATTCAGTTTCCACTCCACCTTCCTGTACTGACTTTGTTAAGTAGACTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR-3UTR CCA 90 bp | GAGACAGTGGAGGAGGAACACAGCCACCGTCTTGCGCAATTTCTACTGGCTGATGAAGAAGCAGGGGACTaGGGAACACCCCACTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: ETVEEEHSHRLAQFLLADEEAGD*GTPHCH Trigger: GTGGCAGTGGGGTGTTCCCCAGTCCCCTGCTTCTTC...ATCAGCCAGTAGAAATTGCGCAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR GCA 90 bp | TGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTTGTGGGGAACACCCCACTaGCACTGCCCTGGTAAACAC | + |
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Preference number: 2 (lower is better) Translates to: WNRSFHQRQWRRNTATVLWGTPH*HCPGKH Trigger: GTGTTTACCAGGGCAGTGGCAGTGGGGTGTTCCCCA...CAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR CCA 90 bp | ACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTTGCGCAAGGCTGTTGATAAACTaGCTGAGCCACCATCACAGG | + |
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Preference number: 2 (lower is better) Translates to: TEVSIRDSGGGTQPPSCARLLIN*LSHHHR Trigger: CCTGTGATGGTGGCTCAGCCAGTTTATCAACAGCCT...TGCGCAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR GCA 90 bp | GTCAGAATAAGGCTCTGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACACCCCACTGCCACTaGCCTGGTAAACACTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: VRIRLWNRSFHQRQWRRNTPHCH*PGKHCA Trigger: AGCACAGTGTTTACCAGGGCAGTGGCAGTGGGGTGT...GTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCAGAGCCTTATTCTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR CAA 90 bp | CCTTGGTTCCCTAAGTTTCACAACGGGCAGCTTCTAGCCGGTTCCTaGAAGCTGGATCTTGGTCACACAAGGATCAATGGACAAGAAATC | + |
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Preference number: 2 (lower is better) Translates to: PWFPKFHNGQLLAGS*KLDLGHTRINGQEI Trigger: GATTTCTTGTCCATTGATCCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAACTTAGGGAACCAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCTTCTCACAGAATGTAACCTTGGTTCCCTAAGTTTCACAACGGGCAGCTTCGGACAAGAAATCAGTTaGGCTGGACTAGAGCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: LLLTECNLGSLSFTTGSFGQEIS*AGLELP Trigger: GGGCAGCTCTAGTCCAGCTCAACTGATTTCTTGTCC...GAAGCTGCCCGTTGTGAAACTTAGGGAACCAAGGTTACATTCTGTGAGAAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTTGCGCAATTGGTACCCAGTTGAAGTaGTCAGATACATTGTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: EVSIRDSGGGTQPPSCAIGTQLK*SDTLFQ Trigger: CTGGAACAATGTATCTGACCACTTCAACTGGGTACC...AATTGCGCAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR CAA 90 bp | AGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTaGCGCAATTTCTACTGGCTGATAAATAACCTCAGAAGGTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: RSFHQRQWRRNTATV*RNFYWLINNLRRLQ Trigger: CTGCAACCTTCTGAGGTTATTTATCAGCCAGTAGAAATTGCGCAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR TCA 90 bp | TGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTTGATAAGGGTACCCAGTTaGAGTGGTCAGATACATTGT | + |
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Preference number: 2 (lower is better) Translates to: WNRSFHQRQWRRNTATVLIRVPS*SGQIHC Trigger: ACAATGTATCTGACCACTTCAACTGGGTACCCTTAT...CAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR TCA 90 bp | CGGGAAAATGTCTGGGGTCTGGTCCTGTGTTTGCTGCTGAGCATGGCATGCATGACCAAATCGAGAAAATaGAAGACACCTCACTATTAC | + |
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Preference number: 2 (lower is better) Translates to: RENVWGLVLCLLLSMACMTKSRK*KTPHYY Trigger: GTAATAGTGAGGTGTCTTTCATTTTCTCGATTTGGT...CATGCATGCCATGCTCAGCAGCAAACACAGGACCAGACCCCAGACATTTTCCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| 3UTR-3UTR GCA 90 bp | GTCAGAATAAGGCTCTGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACGGCCTGATAGTGATATaGAGGCTGTTGATAAACTGG | + |
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Preference number: 2 (lower is better) Translates to: VRIRLWNRSFHQRQWRRNGLIVI*RLLINW Trigger: CCAGTTTATCAACAGCCTGCATATCACTATCAGGCC...GTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCAGAGCCTTATTCTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR GCA 90 bp | TCTGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTATAACCTCAGAAGGTTaGAGATATAGGAATGGAGCA | + |
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Preference number: 2 (lower is better) Translates to: SGTEVSIRDSGGGTQPPSITSEG*RYRNGA Trigger: TGCTCCATTCCTATATCTGCAACCTTCTGAGGTTAT...AGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR CAA 90 bp | TTAACTAACCCTAAGTTTCACAACGGGCAGCTTCTAGCCGGTTCCTaGAAGCTGGATCTTGGTCACACAAGGATCAATGGACAAGAAATC | + |
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Preference number: 2 (lower is better) Translates to: LTNPKFHNGQLLAGS*KLDLGHTRINGQEI Trigger: GATTTCTTGTCCATTGATCCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAACTTAGGGTTAGTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| 3UTR-3UTR TCA 90 bp | GTAATGCTGATATTTGGACCTTTCTCTTTCTGTTCCAAAGTTAACAAGCCAGTGGGACAAGAAATCAGTTaGGCTGGACTAGAGCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: VMLIFGPFSFCSKVNKPVGQEIS*AGLELP Trigger: GGGCAGCTCTAGTCCAGCTCAACTGATTTCTTGTCC...CACTGGCTTGTTAACTTTGGAACAGAAAGAGAAAGGTCCAAATATCAGCATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTCAGTACAGGAAGGTGGAGTGGAAACTGAATCCTCTGCTCTGAAATCTTTTCCCACAGATGAAGGCTaGGAAAAGCTTCTTCTCACA | + |
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Preference number: 2 (lower is better) Translates to: KSVQEGGVETESSALKSFPTDEG*EKLLLT Trigger: TGTGAGAAGAAGCTTTTCTCAGCCTTCATCTGTGGG...AAAAGATTTCAGAGCAGAGGATTCAGTTTCCACTCCACCTTCCTGTACTGACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTCAGTACAGGAAGGTGGAGTGGAAACTGAATCCTCTGCTCTGAAATCTTTTAGAAATCAGTTGAGCTaGACTAGAGCTGCCCAATTG | + |
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Preference number: 2 (lower is better) Translates to: KSVQEGGVETESSALKSFRNQLS*TRAAQL Trigger: CAATTGGGCAGCTCTAGTCCAGCTCAACTGATTTCT...AAAAGATTTCAGAGCAGAGGATTCAGTTTCCACTCCACCTTCCTGTACTGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGTAAACACTGTGCTGGGGCCTGATAGTGATATGCAGGCTGTTGATAAACTGGACAGAAGTTACTTCTaGAGTATGAAAATAAGCAAC | + |
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Preference number: 2 (lower is better) Translates to: LVNTVLGPDSDMQAVDKLDRSYF*SMKISN Trigger: GTTGCTTATTTTCATACTCCAGAAGTAACTTCTGTC...CAGTTTATCAACAGCCTGCATATCACTATCAGGCCCCAGCACAGTGTTTACCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR CAA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGTGGACAAGAAATCAGTaGAGCTGGACTAGAGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRWTRNQ*SWTRAA Trigger: GGCAGCTCTAGTCCAGCTCAACTGATTTCTTGTCCA...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| 3UTR CCA 72 bp | CGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTaGTCACACAAGGATCAATGGACAAGAAATCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: RAASSRFLEAGS*SHKDQWTRNQL Trigger: CAACTGATTTCTTGTCCATTGATCCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| 3UTR TCA 72 bp | AGGCTGCATCATAGGTGCAGGCATAGCAATGGCACTTaGAGCATAAACCTGGTGATATGCTGCTTGAACTCC | + |
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Preference number: 3 (lower is better) Translates to: RLHHRCRHSNGT*SINLVICCLNS Trigger: GGAGTTCAAGCAGCATATCACCAGGTTTATGCTTCAAGTGCCATTGCTATGCCTGCACCTATGATGCAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR CAA 90 bp | AAACCTGGTGATATGCTGCTTGAACTCCATGGTCAGAATAAGGCTCTGGAACAGGTGATATGCAGGCTGTaGATAAACTGGCTGAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: KPGDMLLELHGQNKALEQVICRL*INWLSH Trigger: GTGGCTCAGCCAGTTTATCAACAGCCTGCATATCAC...CTGTTCCAGAGCCTTATTCTGACCATGGAGTTCAAGCAGCATATCACCAGGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR TCA 72 bp | AGCAACGCCATTATGGTAAGTATAAGGGTACCCAGTTaGAGTGGTCAGATACATTGTTCCAGCCGCTGGCAT | + |
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Preference number: 3 (lower is better) Translates to: SNAIMVSIRVPS*SGQIHCSSRWH Trigger: ATGCCAGCGGCTGGAACAATGTATCTGACCACTTCAACTGGGTACCCTTATACTTACCATAATGGCGTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| 3UTR-3UTR CAA 90 bp | AAGTCAGTACAGGAAGGTGGAGTGGAAACTGAATCCTCTGCTCTGAAATCTTTTTGGACAAGAAATCAGTaGAGCTGGACTAGAGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: KSVQEGGVETESSALKSFWTRNQ*SWTRAA Trigger: GGCAGCTCTAGTCCAGCTCAACTGATTTCTTGTCCA...AAAAGATTTCAGAGCAGAGGATTCAGTTTCCACTCCACCTTCCTGTACTGACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR TCA 72 bp | CTTAACAAAGTCAGTACAGGAAGGTGGAGTGGAAACTaGATCCTCTGCTCTGAAATCTTTTCTAGGATGAAA | + |
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Preference number: 3 (lower is better) Translates to: LNKVSTGRWSGN*ILCSEIFSRMK Trigger: TTTCATCCTAGAAAAGATTTCAGAGCAGAGGATTCAGTTTCCACTCCACCTTCCTGTACTGACTTTGTTAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| CDS-3UTR CCA 90 bp | GTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACGAAGAAGCAGGGGACTaGGGAACACCCCACTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: VSQRAASSRFLEAGSWSHEEAGD*GTPHCH Trigger: GTGGCAGTGGGGTGTTCCCCAGTCCCCTGCTTCTTC...GTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | TTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACATGGGGAACACCCCACTaGCACTGCCCTGGTAAACAC | + |
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Preference number: 4 (lower is better) Translates to: FHNGQLLAGSLKLDLGHTWGTPH*HCPGKH Trigger: GTGTTTACCAGGGCAGTGGCAGTGGGGTGTTCCCCA...TGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | CCTAAGTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTACACCCCACTGCCACTaGCCTGGTAAACACTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: PKFHNGQLLAGSLKLDLGTPHCH*PGKHCA Trigger: AGCACAGTGTTTACCAGGGCAGTGGCAGTGGGGTGT...ACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAACTTAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR TCA 90 bp | AGGCTCTGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGAATCTGTTTGTGTCTaGTTTGTTGACTGCGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: RLWNRSFHQRQWRRNTATESVCV*FVDCAR Trigger: CCGGGCGCAGTCAACAAATCAGACACAAACAGATTC...GGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCAGAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR TCA 90 bp | GTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACATTCAAAGGCACAGGTaGCACAGGATTAGGGGATGG | + |
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Preference number: 4 (lower is better) Translates to: VSQRAASSRFLEAGSWSHIQRHR*HRIRGW Trigger: CCATCCCCTAATCCTGTGTCACCTGTGCCTTTGAAT...GTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | TCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGAGGCTGCATCATAGGTaGAGGCATAGCAATGGCACT | + |
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Preference number: 4 (lower is better) Translates to: SQRAASSRFLEAGSWSHKRLHHR*RHSNGT Trigger: AGTGCCATTGCTATGCCTGCACCTATGATGCAGCCT...CTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| CDS-3UTR TCA 90 bp | TGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTTGATTCAAAGGCACAGGTaGCACAGGATTAGGGGATGG | + |
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Preference number: 4 (lower is better) Translates to: WNRSFHQRQWRRNTATVLIQRHR*HRIRGW Trigger: CCATCCCCTAATCCTGTGTCACCTGTGCCTTTGAAT...CAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR GCA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGAACCTGGTGATATGCTaGTTGAACTCCATGGTCAGA | + |
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Preference number: 4 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRNLVIC*LNSMVR Trigger: TCTGACCATGGAGTTCAAGCAGCATATCACCAGGTT...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | ACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTTGCGCATCTTGGGCCACTTGTTaGGTTATTCAAAGGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: TEVSIRDSGGGTQPPSCASWATC*VIQRHR Trigger: CCTGTGCCTTTGAATAACCCAACAAGTGGCCCAAGA...TGCGCAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR CCA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGCCACACTGTTTTAATTaGCTCAGGCTGCATCATAGG | + |
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Preference number: 4 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRPHCFN*LRLHHR Trigger: CCTATGATGCAGCCTGAGCCAATTAAAACAGTGTGG...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | CGGGAAAATGTCTGGGGTCTGGTCCTGTGTTTGCTGCTGAGCATGGCATGCATGCCACACTGTTTTAATTaGCTCAGGCTGCATCATAGG | + |
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Preference number: 4 (lower is better) Translates to: RENVWGLVLCLLLSMACMPHCFN*LRLHHR Trigger: CCTATGATGCAGCCTGAGCCAATTAAAACAGTGTGG...CATGCATGCCATGCTCAGCAGCAAACACAGGACCAGACCCCAGACATTTTCCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR TCA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGATAAGGGTACCCAGTTaGAGTGGTCAGATACATTGT | + |
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Preference number: 4 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRIRVPS*SGQIHC Trigger: ACAATGTATCTGACCACTTCAACTGGGTACCCTTAT...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGATAAACCTGGTGATATaGTGCTTGAACTCCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRINLVI*CLNSMV Trigger: GACCATGGAGTTCAAGCAGCATATCACCAGGTTTAT...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | TCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGTTAATTGGCTCAGGCTaGATCATAGGTGCAGGCATA | + |
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Preference number: 4 (lower is better) Translates to: SQRAASSRFLEAGSWSHKLIGSG*IIGAGI Trigger: TATGCCTGCACCTATGATGCAGCCTGAGCCAATTAA...CTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | TCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGAACCTGGTGATATGCTaGTTGAACTCCATGGTCAGN | + |
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Preference number: 4 (lower is better) Translates to: SQRAASSRFLEAGSWSHKNLVIC*LNSMVX Trigger: NCTGACCATGGAGTTCAAGCAGCATATCACCAGGTT...CTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| CDS-3UTR CCA 90 bp | GTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACCACAGTTCCGTATCTTaGGCCACTTGTTGGGTTATT | + |
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Preference number: 4 (lower is better) Translates to: VSQRAASSRFLEAGSWSHHSSVS*ATCWVI Trigger: AATAACCCAACAAGTGGCCCAAGATACGGAACTGTG...GTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| 3UTR CAA 72 bp | CCTAAGTTTCACAACGGGCAGCTTCTAGCCGGTTCCTaGAAGCTGGATCTTGGTCACACAAGGATCAATGGA | + |
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Preference number: 4 (lower is better) Translates to: PKFHNGQLLAGS*KLDLGHTRING Trigger: TCCATTGATCCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAACTTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | GATGAAAGTGTGGGCTTCGAGAATAGCGAGGTTTCAAACCCACAGATGAAGGCTAGGCTGCATCATAGGTaGAGGCATAGCAATGGCACT | + |
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Preference number: 4 (lower is better) Translates to: DESVGFENSEVSNPQMKARLHHR*RHSNGT Trigger: AGTGCCATTGCTATGCCTGCACCTATGATGCAGCCT...AGCCTTCATCTGTGGGTTTGAAACCTCGCTATTCTCGAAGCCCACACTTTCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| 3UTR CAA 72 bp | CATCAGAGACAGTGGAGGAGGAACACAGCCACCGTCTaGCGCAATTTCTACTGGCTGATAAATAACCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: HQRQWRRNTATV*RNFYWLINNLR Trigger: TCTGAGGTTATTTATCAGCCAGTAGAAATTGCGCAAGACGGTGGCTGTGTTCCTCCTCCACTGTCTCTGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR GCA 90 bp | GTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACATAACCTCAGAAGGTTaGAGATATAGGAATGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: VSQRAASSRFLEAGSWSHITSEG*RYRNGA Trigger: TGCTCCATTCCTATATCTGCAACCTTCTGAGGTTAT...GTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | CCTAAGTTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTATAAACCTGGTGATATaGTGCTTGAACTCCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: PKFHNGQLLAGSLKLDLGINLVI*CLNSMV Trigger: GACCATGGAGTTCAAGCAGCATATCACCAGGTTTAT...ACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAACTTAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161810.2 ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | GAAGCTGGATCTTGGTCACACAAGGATCAATGGACAAGAAATCAGTTGAGCTGGAGGCTGTTGATAAACTaGCTGAGCCACCATCACAGG | + |
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Preference number: 4 (lower is better) Translates to: EAGSWSHKDQWTRNQLSWRLLIN*LSHHHR Trigger: CCTGTGATGGTGGCTCAGCCAGTTTATCAACAGCCT...CCAGCTCAACTGATTTCTTGTCCATTGATCCTTGTGTGACCAAGATCCAGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | TTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAGTCAGAATAAGGCTCTaGAACAGAAGTTTCCATCAG | + |
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Preference number: 4 (lower is better) Translates to: FHNGQLLAGSLKLDLGHTVRIRL*NRSFHQ Trigger: CTGATGGAAACTTCTGTTCCAGAGCCTTATTCTGAC...TGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | CGGGAAAATGTCTGGGGTCTGGTCCTGTGTTTGCTGCTGAGCATGGCATGCATGGACAGAAGTTACTTCTaGAGTATGAAAATAAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: RENVWGLVLCLLLSMACMDRSYF*SMKISN Trigger: GTTGCTTATTTTCATACTCCAGAAGTAACTTCTGTC...CATGCATGCCATGCTCAGCAGCAAACACAGGACCAGACCCCAGACATTTTCCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| 3UTR CAA 72 bp | AAGCAACGCCATTATGGTAAGTATAAGGGTACCCAGTaGAAGTGGTCAGATACATTGTTCCAGCCGCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: KQRHYGKYKGTQ*KWSDTLFQPLA Trigger: TGCCAGCGGCTGGAACAATGTATCTGACCACTTCAACTGGGTACCCTTATACTTACCATAATGGCGTTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR CCA 90 bp | ATATGGAACGTGAAGGCCAAGATGGTGGGACAGAAGTTACTTCTGGAGTATGAACACAGTTCCGTATCTTaGGCCACTTGTTGGGTTATT | + |
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Preference number: 4 (lower is better) Translates to: IWNVKAKMVGQKLLLEYEHSSVS*ATCWVI Trigger: AATAACCCAACAAGTGGCCCAAGATACGGAACTGTG...TTCATACTCCAGAAGTAACTTCTGTCCCACCATCTTGGCCTTCACGTTCCATAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR CCA 90 bp | GTAATGCTGATATTTGGACCTTTCTCTTTCTGTTCCAAAGTTAACAAGCCAGTGTTCCATCAGAGACAGTaGAGGAGGAACACAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: VMLIFGPFSFCSKVNKPVFHQRQ*RRNTAT Trigger: GGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAA...CACTGGCTTGTTAACTTTGGAACAGAAAGAGAAAGGTCCAAATATCAGCATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | TCTGAAATCTTTTCTAGGATGAAAGTGTGGGCTTCGAGAATAGCGAGGTTTCAATTAATTGGCTCAGGCTaGATCATAGGTGCAGGCATA | + |
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Preference number: 4 (lower is better) Translates to: SEIFSRMKVWASRIARFQLIGSG*IIGAGI Trigger: TATGCCTGCACCTATGATGCAGCCTGAGCCAATTAA...TTGAAACCTCGCTATTCTCGAAGCCCACACTTTCATCCTAGAAAAGATTTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| CDS-3UTR CCA 90 bp | GTAATGCTGATATTTGGACCTTTCTCTTTCTGTTCCAAAGTTAACAAGCCAGTGTCTTGGGCCACTTGTTaGGTTATTCAAAGGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: VMLIFGPFSFCSKVNKPVSWATC*VIQRHR Trigger: CCTGTGCCTTTGAATAACCCAACAAGTGGCCCAAGA...CACTGGCTTGTTAACTTTGGAACAGAAAGAGAAAGGTCCAAATATCAGCATTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | AGCAAATGCCAAATTCAGACAGCTTATTGTGGAATAAATAAGTATGGTGAGGTACATTGTTCCAGCCGCTaGCATGAGACTAGAACGAGG | + |
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Preference number: 4 (lower is better) Translates to: SKCQIQTAYCGINKYGEVHCSSR*HETRTR Trigger: CCTCGTTCTAGTCTCATGCCAGCGGCTGGAACAATG...TACCTCACCATACTTATTTATTCCACAATAAGCTGTCTGAATTTGGCATTTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR TCA 90 bp | AGCAAATGCCAAATTCAGACAGCTTATTGTGGAATAAATAAGTATGGTGAGGTAACTAGATATGGAACGTaGAGGCCAAGATGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SKCQIQTAYCGINKYGEVTRYGT*RPRWWD Trigger: GTCCCACCATCTTGGCCTTCACGTTCCATATCTAGT...TACCTCACCATACTTATTTATTCCACAATAAGCTGTCTGAATTTGGCATTTGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR GCA 90 bp | GGAATAAATAAGTATGGTGAGGTATTAACTAACCCTAAGTTTCACAACGGGCAGGGCCTGATAGTGATATaGAGGCTGTTGATAAACTGG | + |
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Preference number: 4 (lower is better) Translates to: GINKYGEVLTNPKFHNGQGLIVI*RLLINW Trigger: CCAGTTTATCAACAGCCTGCATATCACTATCAGGCC...CTGCCCGTTGTGAAACTTAGGGTTAGTTAATACCTCACCATACTTATTTATTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | GGAATAAATAAGTATGGTGAGGTATTAACTAACCCTAAGTTTCACAACGGGCAGGGTACCCAGTTGAAGTaGTCAGATACATTGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GINKYGEVLTNPKFHNGQGTQLK*SDTLFQ Trigger: CTGGAACAATGTATCTGACCACTTCAACTGGGTACC...CTGCCCGTTGTGAAACTTAGGGTTAGTTAATACCTCACCATACTTATTTATTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CCA 90 bp | AGCAAATGCCAAATTCAGACAGCTTATTGTGGAATAAATAAGTATGGTGAGGTATTGCGCAATTTCTACTaGCTGATAAATAACCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: SKCQIQTAYCGINKYGEVLRNFY*LINNLR Trigger: TCTGAGGTTATTTATCAGCCAGTAGAAATTGCGCAA...TACCTCACCATACTTATTTATTCCACAATAAGCTGTCTGAATTTGGCATTTGCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | TCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGAACACAGCCACCGTCTaGCGCAATTTCTACTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: SQRAASSRFLEAGSWSHKNTATV*RNFYWL Trigger: CAGCCAGTAGAAATTGCGCAAGACGGTGGCTGTGTT...CTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGATGAAACCATACCCTTaGGACACTCCAGCTCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRMKPYP*DTPALS Trigger: TGACAGAGCTGGAGTGTCCAAAGGGTATGGTTTCAT...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | CTGTGCTGGGGCCTGATAGTGATATGCAGGCTGTTGATAAACTGGCTGAGCCACATCTTGGGCCACTTGTaGGGTTATTCAAAGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: LCWGLIVICRLLINWLSHILGHL*GYSKAQ Trigger: CTGTGCCTTTGAATAACCCAACAAGTGGCCCAAGAT...GTGGCTCAGCCAGTTTATCAACAGCCTGCATATCACTATCAGGCCCCAGCACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR CAA 90 bp | AGGCTCTGGAACAGAAGTTTCCATCAGAGACAGTGGAGGAGGAACACAGCCACCCGTATCTTGGGCCACTaGTTGGGTTATTCAAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: RLWNRSFHQRQWRRNTATRILGH*LGYSKA Trigger: TGCCTTTGAATAACCCAACAAGTGGCCCAAGATACG...GGTGGCTGTGTTCCTCCTCCACTGTCTCTGATGGAAACTTCTGTTCCAGAGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR CAA 90 bp | GTGCTGGGGCCTGATAGTGATATGCAGGCTGTTGATAAACTGGCTGAGCCACCATCACAGTTCCGTATCTaGGGCCACTTGTTGGGTTAT | + |
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Preference number: 5 (lower is better) Translates to: VLGPDSDMQAVDKLAEPPSQFRI*GHLLGY Trigger: ATAACCCAACAAGTGGCCCAAGATACGGAACTGTGA...TGGTGGCTCAGCCAGTTTATCAACAGCCTGCATATCACTATCAGGCCCCAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159564.9 |
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| CDS-3UTR CAA 90 bp | CGGGAAAATGTCTGGGGTCTGGTCCTGTGTTTGCTGCTGAGCATGGCATGCATGCTGGTGATATGCTGCTaGAACTCCATGGTCAGAATA | + |
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Preference number: 5 (lower is better) Translates to: RENVWGLVLCLLLSMACMLVICC*NSMVRI Trigger: TATTCTGACCATGGAGTTCAAGCAGCATATCACCAG...CATGCATGCCATGCTCAGCAGCAAACACAGGACCAGACCCCAGACATTTTCCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | CACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGACGAGGAATCCCTACTaGTTGTTTTCTTATTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: HNGQLLAGSLKLDLGHTRTRNPY*LFSYCW Trigger: CCAGCAATAAGAAAACAACAAGTAGGGATTCCTCGT...CCTTGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS TCA 90 bp | AATTGGCTCAGGCTGCATCATAGGTGCAGGCATAGCAATGGCACTTaGAGCATAAACCTGGTGATATGCTGCTTGAACTCCATGGTCAGN | + |
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Preference number: 5 (lower is better) Translates to: NWLRLHHRCRHSNGT*SINLVICCLNSMVX Trigger: NCTGACCATGGAGTTCAAGCAGCATATCACCAGGTTTATGCTTCAAGTGCCATTGCTATGCCTGCACCTATGATGCAGCCTGAGCCAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161810.2 |
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| CDS-3UTR CAA 90 bp | TTTCACAACGGGCAGCTTCTAGCCGGTTCCTTGAAGCTGGATCTTGGTCACACAAGGAATCCCTACTTGTaGTTTTCTTATTGCTGGACC | + |
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Preference number: 5 (lower is better) Translates to: FHNGQLLAGSLKLDLGHTRNPYL*FSYCWT Trigger: GGTCCAGCAATAAGAAAACAACAAGTAGGGATTCCT...TGTGTGACCAAGATCCAGCTTCAAGGAACCGGCTAGAAGCTGCCCGTTGTGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | GGAATAAATAAGTATGGTGAGGTATTAACTAACCCTAAGTTTCACAACGGGCAGGTGATATGCAGGCTGTaGATAAACTGGCTGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: GINKYGEVLTNPKFHNGQVICRL*INWLSH Trigger: GTGGCTCAGCCAGTTTATCAACAGCCTGCATATCAC...CTGCCCGTTGTGAAACTTAGGGTTAGTTAATACCTCACCATACTTATTTATTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | GTAATGCTGATATTTGGACCTTTCTCTTTCTGTTCCAAAGTTAACAAGCCAGTGCGTATCTTGGGCCACTaGTTGGGTTATTCAAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: VMLIFGPFSFCSKVNKPVRILGH*LGYSKA Trigger: TGCCTTTGAATAACCCAACAAGTGGCCCAAGATACG...CACTGGCTTGTTAACTTTGGAACAGAAAGAGAAAGGTCCAAATATCAGCATTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS-3UTR CAA 90 bp | AGCAAATGCCAAATTCAGACAGCTTATTGTGGAATAAATAAGTATGGTGAGGTAATCTTGGGCCACTTGTaGGGTTATTCAAAGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: SKCQIQTAYCGINKYGEVILGHL*GYSKAQ Trigger: CTGTGCCTTTGAATAACCCAACAAGTGGCCCAAGAT...TACCTCACCATACTTATTTATTCCACAATAAGCTGTCTGAATTTGGCATTTGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173983.8 |
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| CDS GCA 90 bp | TGGCATGAGACTAGAACGAGGAATCCCTACTTGTTGTTTTCTTATTaGTGGACCAATGTTGAGTTTCTTATCCTTATAATTGAGTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: WHETRTRNPYLLFSY*WTNVEFLILIIEFF Trigger: GAAAAACTCAATTATAAGGATAAGAAACTCAACATTGGTCCAGCAATAAGAAAACAACAAGTAGGGATTCCTCGTTCTAGTCTCATGCCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087585.10 ENSMUST00000173983.8 |
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