Pregenerated sensors for BOLA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045160Ensembl transcript IDs: ENSMUST00000120040.8, ENSMUST00000136501.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCAGGCCTCCCTCCTCCTTCCTAGTGGCATCCTCATACCAAATCTaGATTCTACCCCTAAGCGTCCACAAGCCCGCTCTTCCTCGTGAC | + |
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Preference number: 1 (lower is better) Translates to: ARPPSSFLVASSYQI*ILPLSVHKPALPRD Trigger: GTCACGAGGAAGAGCGGGCTTGTGGACGCTTAGGGGTAGAATCCAGATTTGGTATGAGGATGCCACTAGGAAGGAGGAGGGAGGCCTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 90 bp | CTTTTCTTATATTGGGTACATGACAGCTGGGAGAGATGCCCGCCCTaGCACACATGTAAAGGTTGGCAGCCCACCGGCGGGAATGGGTCC | + |
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Preference number: 1 (lower is better) Translates to: LFLYWVHDSWERCPP*HTCKGWQPTGGNGS Trigger: GGACCCATTCCCGCCGGTGGGCTGCCAACCTTTACATGTGTGCCAGGGCGGGCATCTCTCCCAGCTGTCATGTACCCAATATAAGAAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 90 bp | GACTTCTGGGTGGCTGCATGGTGCTCCATGGCAATTTGTCAGAGCTaGAGCAGTAAGTGCCACAAAATCAAAGCCACTCTGCCAGGCCTC | + |
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Preference number: 1 (lower is better) Translates to: DFWVAAWCSMAICQS*SSKCHKIKATLPGL Trigger: GAGGCCTGGCAGAGTGGCTTTGATTTTGTGGCACTTACTGCTTCAGCTCTGACAAATTGCCATGGAGCACCATGCAGCCACCCAGAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 90 bp | GCTCTGGCCTCACTGGTGACTTCTGGGTGGCTGCATGGTGCTCCATaGCAATTTGTCAGAGCTGAAGCAGTAAGTGCCACAAAATCAAAG | + |
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Preference number: 1 (lower is better) Translates to: ALASLVTSGWLHGAP*QFVRAEAVSATKSK Trigger: CTTTGATTTTGTGGCACTTACTGCTTCAGCTCTGACAAATTGCCATGGAGCACCATGCAGCCACCCAGAAGTCACCAGTGAGGCCAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 90 bp | GCCACCTCCTGGTCCAGTAATTTTCCTATGACTGACTCAGTCACGTaGCTCTCAAACATGAGCTTTATAGCTCATGGCATTGAGTTGCAG | + |
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Preference number: 1 (lower is better) Translates to: ATSWSSNFPMTDSVT*LSNMSFIAHGIELQ Trigger: CTGCAACTCAATGCCATGAGCTATAAAGCTCATGTTTGAGAGCCACGTGACTGAGTCAGTCATAGGAAAATTACTGGACCAGGAGGTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 90 bp | AAACCAACCAAAACTCTGGCCTTCACTCTGTGTCCAGGAGTAGGATaGACTGTACAGAGACTCCAACAGTGTGAGCAAAAGTCACTGCTT | + |
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Preference number: 1 (lower is better) Translates to: KPTKTLAFTLCPGVG*TVQRLQQCEQKSLL Trigger: AAGCAGTGACTTTTGCTCACACTGTTGGAGTCTCTGTACAGTTCATCCTACTCCTGGACACAGAGTGAAGGCCAGAGTTTTGGTTGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TTATGCCCACTCGCAGGGAGGGGTGTGCTGGAAGAAGACCACAGCAGAGCCCTCGGCCCTGAAGCTGGGTaGAAGTCAGCCTGCACCCTC | + |
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Preference number: 2 (lower is better) Translates to: LCPLAGRGVLEEDHSRALGPEAG*KSACTL Trigger: GAGGGTGCAGGCTGACTTTCACCCAGCTTCAGGGCC...GAGGGCTCTGCTGTGGTCTTCTTCCAGCACACCCCTCCCTGCGAGTGGGCATAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CAA 90 bp | GGGATGTGGGGATGGCCGGGAAGGCAGAAGCCACATTCGAGGTATTaGGCCACTGGATTTAGGGGAACACTGGTGAGCCAGCTCCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: GMWGWPGRQKPHSRY*ATGFRGTLVSQLLE Trigger: TTCCAGGAGCTGGCTCACCAGTGTTCCCCTAAATCCAGTGGCCAAATACCTCGAATGTGGCTTCTGCCTTCCCGGCCATCCCCACATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TTATGCCCACTCGCAGGGAGGGGTGTGCTGGAAGAAGACCACAGCAGAGCCCTCATGGCACATCTGTTCTaGGCAGGAGGCACCTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: LCPLAGRGVLEEDHSRALMAHLF*AGGTCE Trigger: TTCACAGGTGCCTCCTGCTCAGAACAGATGTGCCAT...GAGGGCTCTGCTGTGGTCTTCTTCCAGCACACCCCTCCCTGCGAGTGGGCATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | CCACTCTGCCAGGCCTCCCTCCTCCTTCCTAGTGGCATCCTCATACCAAATCTGAGAGCCCTCCAAAGCTaGGACCCTGGTGGGTTTTCA | + |
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Preference number: 2 (lower is better) Translates to: PLCQASLLLPSGILIPNLRALQS*DPGGFS Trigger: TGAAAACCCACCAGGGTCCCAGCTTTGGAGGGCTCT...CAGATTTGGTATGAGGATGCCACTAGGAAGGAGGAGGGAGGCCTGGCAGAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | CCAAGCCTGAGTTCAGACCCCAGGACTCAGATCTGCATGTTTTCTCTGCCTCCCCTGAAAGGGGGCACCTaGAGCATGGCACATCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: PSLSSDPRTQICMFSLPPLKGGT*SMAHLF Trigger: GAACAGATGTGCCATGCTTCAGGTGCCCCCTTTCAG...GGGAGGCAGAGAAAACATGCAGATCTGAGTCCTGGGGTCTGAACTCAGGCTTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTCTTATATTGGGTACATGACAGCTGGGAGAGATGCCCGCCCTGGCACACATCCCCAGAGCCCAGGGTaGGTGTGTGCAAGGTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: FSYIGYMTAGRDARPGTHPQSPG*VCARSA Trigger: AGCTGACCTTGCACACACTCACCCTGGGCTCTGGGG...ATGTGTGCCAGGGCGGGCATCTCTCCCAGCTGTCATGTACCCAATATAAGAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGCTCACTGCCAAGCCTGAGTTCAGACCCCAGGACTCAGATCTGCATGTTCAAGAAGGCAGGCCCTaGAGCTGGGTGAAAGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: KVLTAKPEFRPQDSDLHVQEGRP*SWVKVS Trigger: GCTGACTTTCACCCAGCTTCAGGGCCTGCCTTCTTG...AACATGCAGATCTGAGTCCTGGGGTCTGAACTCAGGCTTGGCAGTGAGCACTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | CCACTCTGCCAGGCCTCCCTCCTCCTTCCTAGTGGCATCCTCATACCAAATCTGAAGCTGGGACCCTGGTaGGTTTTCACACTTGGTCTA | + |
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Preference number: 2 (lower is better) Translates to: PLCQASLLLPSGILIPNLKLGPW*VFTLGL Trigger: TAGACCAAGTGTGAAAACCCACCAGGGTCCCAGCTT...CAGATTTGGTATGAGGATGCCACTAGGAAGGAGGAGGGAGGCCTGGCAGAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CAA 90 bp | CTGACTGAGCATCAGACACTAGAATGTCTACCCAGAACACCAGACTaGGTGACCCTGACATCCAGACAGATGTCCCAGCTTCCCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: LTEHQTLECLPRTPD*VTLTSRQMSQLPRV Trigger: GACTCTGGGAAGCTGGGACATCTGTCTGGATGTCAGGGTCACCAAGTCTGGTGTTCTGGGTAGACATTCTAGTGTCTGATGCTCAGTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCCGGGAAGGCAGAAGCCACATTCGAGGTATTTGGCCACTGGATTTAGGGGATGTCCAGGAGTAGGATaGACTGTACAGAGACTCCAA | + |
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Preference number: 2 (lower is better) Translates to: WPGRQKPHSRYLATGFRGCPGVG*TVQRLQ Trigger: TTGGAGTCTCTGTACAGTTCATCCTACTCCTGGACA...TCCCCTAAATCCAGTGGCCAAATACCTCGAATGTGGCTTCTGCCTTCCCGGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TGGCCGGGAAGGCAGAAGCCACATTCGAGGTATTTGGCCACTGGATTTAGGGGAGCCAGGGCTACACAATaGGATCCTGTTTCAAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: WPGRQKPHSRYLATGFRGARATQ*DPVSKS Trigger: GCTTTTTGAAACAGGATCTCATTGTGTAGCCCTGGC...TCCCCTAAATCCAGTGGCCAAATACCTCGAATGTGGCTTCTGCCTTCCCGGCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TTTTCTTATATTGGGTACATGACAGCTGGGAGAGATGCCCGCCCTGGCACACATGGCTCTACAAAGCCATaGCTTGCTCTGGCCTCACTG | + |
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Preference number: 2 (lower is better) Translates to: FSYIGYMTAGRDARPGTHGSTKP*LALASL Trigger: CAGTGAGGCCAGAGCAAGTCATGGCTTTGTAGAGCC...ATGTGTGCCAGGGCGGGCATCTCTCCCAGCTGTCATGTACCCAATATAAGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTCGCCAGGTGTGGTGCAGGTTTTAATCCCATCACTCCAGAGGCAGAAGCAGCCCAGGGTGAGTGTGTaGAAGGTCAGCTTTAAAAGT | + |
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Preference number: 2 (lower is better) Translates to: LSPGVVQVLIPSLQRQKQPRVSV*KVSFKS Trigger: ACTTTTAAAGCTGACCTTGCACACACTCACCCTGGG...CTGCTTCTGCCTCTGGAGTGATGGGATTAAAACCTGCACCACACCTGGCGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGTGCTCACTGCCAAGCCTGAGTTCAGACCCCAGGACTCAGATCTGCATGTTAAAAGTCACTGCTTCTaGAAGGGGGCACCTGAAGCA | + |
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Preference number: 2 (lower is better) Translates to: KVLTAKPEFRPQDSDLHVKSHCF*KGAPEA Trigger: TGCTTCAGGTGCCCCCTTTCAGAAGCAGTGACTTTT...AACATGCAGATCTGAGTCCTGGGGTCTGAACTCAGGCTTGGCAGTGAGCACTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGGCAGAAGCCACATTCGAGGTATTTGGCCACTGGATTTAGGGGAACACTGGGAGACTCCAACAGTGTaGGCAAAAGTCACTGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: EGRSHIRGIWPLDLGEHWETPTV*AKVTAS Trigger: AGAAGCAGTGACTTTTGCTCACACTGTTGGAGTCTC...CCAGTGTTCCCCTAAATCCAGTGGCCAAATACCTCGAATGTGGCTTCTGCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCAATTTGTCAGAGCTGAAGCAGTAAGTGCCACAAAATCAAAGCCACTCTGCAGAGGCAGAAGCAGGTaGATCTCTGAGTTCGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: WQFVRAEAVSATKSKPLCRGRSR*ISEFEA Trigger: GGCCTCGAACTCAGAGATCCACCTGCTTCTGCCTCT...GCAGAGTGGCTTTGATTTTGTGGCACTTACTGCTTCAGCTCTGACAAATTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | TTTTCTTATATTGGGTACATGACAGCTGGGAGAGATGCCCGCCCTGGCACACATAACCAACCAAAACTCTaGCCTTCACTCTGTGTCCAG | + |
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Preference number: 2 (lower is better) Translates to: FSYIGYMTAGRDARPGTHNQPKL*PSLCVQ Trigger: CTGGACACAGAGTGAAGGCCAGAGTTTTGGTTGGTT...ATGTGTGCCAGGGCGGGCATCTCTCCCAGCTGTCATGTACCCAATATAAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | GTCGCCAGGTGTGGTGCAGGTTTTAATCCCATCACTCCAGAGGCAGAAGCAGGTATGCAGATGAGAAACTaGGGGTTCGTCATTCTAATA | + |
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Preference number: 2 (lower is better) Translates to: VARCGAGFNPITPEAEAGMQMRN*GFVILI Trigger: TATTAGAATGACGAACCCCCAGTTTCTCATCTGCAT...ACCTGCTTCTGCCTCTGGAGTGATGGGATTAAAACCTGCACCACACCTGGCGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | CACTGTAGCACACGTACAATAAGCACAACCTCATGCACATGCGCACACAGATTTAGTTCGAGGCCATCCTaGTGTGTCCACAGTGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: HCSTRTISTTSCTCAHRFSSRPS*CVHSEF Trigger: GAACTCACTGTGGACACACCAGGATGGCCTCGAACT...AAATCTGTGTGCGCATGTGCATGAGGTTGTGCTTATTGTACGTGTGCTACAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | TCCAAAGCTGGGACCCTGGTGGGTTTTCACACTTGGTCTAAAGTTATGAAGATTCTGGTGTGTCCACAGTaGGTTCCAGAACAGCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: SKAGTLVGFHTWSKVMKILVCPQ*VPEQLE Trigger: TTCTAGCTGTTCTGGAACTCACTGTGGACACACCAG...AATCTTCATAACTTTAGACCAAGTGTGAAAACCCACCAGGGTCCCAGCTTTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGTGACTTCTGGGTGGCTGCATGGTGCTCCATGGCAATTTGTCAGAGCTGAAATTCTAATAGAAGTATaGGAGGAGAGAGTCCCTAAA | + |
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Preference number: 2 (lower is better) Translates to: LVTSGWLHGAPWQFVRAEILIEV*EERVPK Trigger: TTTAGGGACTCTCTCCTCCCATACTTCTATTAGAAT...TTCAGCTCTGACAAATTGCCATGGAGCACCATGCAGCCACCCAGAAGTCACCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR TCA 90 bp | CACTGTAGCACACGTACAATAAGCACAACCTCATGCACATGCGCACACAGATTTAGCAGGAGGCACCTGTaGACTTTAATTAACTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: HCSTRTISTTSCTCAHRFSRRHL*TLINSK Trigger: TTTAGAGTTAATTAAAGTTCACAGGTGCCTCCTGCT...AAATCTGTGTGCGCATGTGCATGAGGTTGTGCTTATTGTACGTGTGCTACAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | TATTGGGTACATGACAGCTGGGAGAGATGCCCGCCCTaGCACACATGTAAAGGTTGGCAGCCCACCGGCGGG | + |
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Preference number: 3 (lower is better) Translates to: YWVHDSWERCPP*HTCKGWQPTGG Trigger: CCCGCCGGTGGGCTGCCAACCTTTACATGTGTGCCAGGGCGGGCATCTCTCCCAGCTGTCATGTACCCAATA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | CAGACACTTTATGCCCACTCGCAGGGAGGGGTGTGCTaGAAGAAGACCACAGCAGAGCCCTCCAAAGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: QTLYAHSQGGVC*KKTTAEPSKAG Trigger: CCCAGCTTTGGAGGGCTCTGCTGTGGTCTTCTTCCAGCACACCCCTCCCTGCGAGTGGGCATAAAGTGTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CAA 90 bp | CCACTCTGCCAGGCCTCCCTCCTCCTTCCTAGTGGCATCCTCATACCAAATCTGCCCAGAACACCAGACTaGGTGACCCTGACATCCAGA | + |
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Preference number: 3 (lower is better) Translates to: PLCQASLLLPSGILIPNLPRTPD*VTLTSR Trigger: TCTGGATGTCAGGGTCACCAAGTCTGGTGTTCTGGG...CAGATTTGGTATGAGGATGCCACTAGGAAGGAGGAGGGAGGCCTGGCAGAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 72 bp | ATCCCATCACTCCAGAGGCAGAAGCAGGTGGATCTCTaGGTTCGAGGCCATCCTGGTGTGTCCACAGTGAGT | + |
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Preference number: 3 (lower is better) Translates to: IPSLQRQKQVDL*VRGHPGVSTVS Trigger: ACTCACTGTGGACACACCAGGATGGCCTCGAACTCAGAGATCCACCTGCTTCTGCCTCTGGAGTGATGGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 72 bp | CCCTCTGCCTACTGTCGTGGATGCGGAGACACTGACTaGGCATCAGACACTAGAATGTCTACCCAGAACACC | + |
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Preference number: 3 (lower is better) Translates to: PSAYCRGCGDTD*ASDTRMSTQNT Trigger: GGTGTTCTGGGTAGACATTCTAGTGTCTGATGCTCAGTCAGTGTCTCCGCATCCACGACAGTAGGCAGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | CCCTCCTCCTTCCTAGTGGCATCCTCATACCAAATCTaGATTCTACCCCTAAGCGTCCACAAGCCCGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: PSSFLVASSYQI*ILPLSVHKPAL Trigger: AAGAGCGGGCTTGTGGACGCTTAGGGGTAGAATCCAGATTTGGTATGAGGATGCCACTAGGAAGGAGGAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR GCA 72 bp | CTTTTCTTATATTGGGTACATGACAGCTGGGAGAGATaGCCGCCCTGGCACACATGTAAAGGTTGGCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: LFLYWVHDSWER*PPWHTCKGWQP Trigger: GGGCTGCCAACCTTTACATGTGTGCCAGGGCGGGCATCTCTCCCAGCTGTCATGTACCCAATATAAGAAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | TCACTGGTGACTTCTGGGTGGCTGCATGGTGCTCCATaGCAATTTGTCAGAGCTGAAGCAGTAAGTGCCACA | + |
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Preference number: 3 (lower is better) Translates to: SLVTSGWLHGAP*QFVRAEAVSAT Trigger: TGTGGCACTTACTGCTTCAGCTCTGACAAATTGCCATGGAGCACCATGCAGCCACCCAGAAGTCACCAGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR GCA 72 bp | GTTCAGACCCCAGGACTCAGATCTGCATGTTTTCTCTaGCTCCCGAGTGTGCACTGTAGCACACGTACAATA | + |
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Preference number: 3 (lower is better) Translates to: VQTPGLRSACFL*LPSVHCSTRTI Trigger: TATTGTACGTGTGCTACAGTGCACACTCGGGAGGCAGAGAAAACATGCAGATCTGAGTCCTGGGGTCTGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | CTGGCAAACTCACCCCACCAGATGCAGATGAGAAACTaGGGGTTCGTCATTCTAATAGAAGTATGGGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: LANSPHQMQMRN*GFVILIEVWEE Trigger: CTCCTCCCATACTTCTATTAGAATGACGAACCCCCAGTTTCTCATCTGCATCTGGTGGGGTGAGTTTGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 72 bp | AACTTCATAGAACCAAAACCCTGGCATCAGGCATGGTaGCACACGCCTTTCATCCAAGCAGGAGACCTAGAA | + |
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Preference number: 3 (lower is better) Translates to: NFIEPKPWHQAW*HTPFIQAGDLE Trigger: TTCTAGGTCTCCTGCTTGGATGAAAGGCGTGTGTCACCATGCCTGATGCCAGGGTTTTGGTTCTATGAAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 72 bp | ATAGACTCAGCTGGTAAAAGTGCTCACTGCCAAGCCTaGGTTCAGACCCCAGGACTCAGATCTGCATGTTTT | + |
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Preference number: 3 (lower is better) Translates to: IDSAGKSAHCQA*VQTPGLRSACF Trigger: AAAACATGCAGATCTGAGTCCTGGGGTCTGAACTCAGGCTTGGCAGTGAGCACTTTTACCAGCTGAGTCTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | TCAGGTCTCAGATCATCAGACTTTGTGGCCACCTCCTaGTCCAGTAATTTTCCTATGACTGACTCAGTCACG | + |
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Preference number: 3 (lower is better) Translates to: SGLRSSDFVATS*SSNFPMTDSVT Trigger: CGTGACTGAGTCAGTCATAGGAAAATTACTGGACCAGGAGGTGGCCACAAAGTCTGATGATCTGAGACCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR-3UTR CAA 90 bp | CACTGTAGCACACGTACAATAAGCACAACCTCATGCACATGCGCACACAGATTTCCACATTCGAGGTATTaGGCCACTGGATTTAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: HCSTRTISTTSCTCAHRFPHSRY*ATGFRG Trigger: TCCCCTAAATCCAGTGGCCAAATACCTCGAATGTGG...AAATCTGTGTGCGCATGTGCATGAGGTTGTGCTTATTGTACGTGTGCTACAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 72 bp | AAAACTCTGGCCTTCACTCTGTGTCCAGGAGTAGGATaGACTGTACAGAGACTCCAACAGTGTGAGCAAAAG | + |
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Preference number: 3 (lower is better) Translates to: KTLAFTLCPGVG*TVQRLQQCEQK Trigger: CTTTTGCTCACACTGTTGGAGTCTCTGTACAGTTCATCCTACTCCTGGACACAGAGTGAAGGCCAGAGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR TCA 72 bp | GGACCCTGGTGGGTTTTCACACTTGGTCTAAAGTTATaGAGATTAAGTGACTTCCCACGCAGACCTAAGACA | + |
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Preference number: 3 (lower is better) Translates to: GPWWVFTLGLKL*RLSDFPRRPKT Trigger: TGTCTTAGGTCTGCGTGGGAAGTCACTTAATCTTCATAACTTTAGACCAAGTGTGAAAACCCACCAGGGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CCA 72 bp | TGGTCCAGTAATTTTCCTATGACTGACTCAGTCACGTaGCTCTCAAACATGAGCTTTATAGCTCATGGCATT | + |
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Preference number: 3 (lower is better) Translates to: WSSNFPMTDSVT*LSNMSFIAHGI Trigger: AATGCCATGAGCTATAAAGCTCATGTTTGAGAGCCACGTGACTGAGTCAGTCATAGGAAAATTACTGGACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CAA 72 bp | GGATGGCCGGGAAGGCAGAAGCCACATTCGAGGTATTaGGCCACTGGATTTAGGGGAACACTGGTGAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: GWPGRQKPHSRY*ATGFRGTLVSQ Trigger: CTGGCTCACCAGTGTTCCCCTAAATCCAGTGGCCAAATACCTCGAATGTGGCTTCTGCCTTCCCGGCCATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CAA 72 bp | TGTCCAGGCATTGAGTCCCGCTGCAGCCACCTGCCTTaGTGTGACTACCAGTGTCAGGGCTCTACAAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: CPGIESRCSHLP*CDYQCQGSTKP Trigger: TGGCTTTGTAGAGCCCTGACACTGGTAGTCACACAAAGGCAGGTGGCTGCAGCGGGACTCAATGCCTGGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS-3UTR TCA 90 bp | CAGCTGGTAAAAGTGCTCACTGCCAAGCCTGAGTTCAGACCCCAGGACTCAGATGGCCCCGCAGCCTCCTaGGATGTCTGTGACTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: QLVKVLTAKPEFRPQDSDGPAAS*DVCDLN Trigger: ATTCAAGTCACAGACATCTCAGGAGGCTGCGGGGCC...ATCTGAGTCCTGGGGTCTGAACTCAGGCTTGGCAGTGAGCACTTTTACCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS-3UTR TCA 90 bp | CCAAGCCTGAGTTCAGACCCCAGGACTCAGATCTGCATGTTTTCTCTGCCTCCCGGCCGTGCATGCCCTTaGTCTCTTCTTTTAGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: PSLSSDPRTQICMFSLPPGRACP*SLLLVP Trigger: AGGCACTAAAAGAAGAGATCAAGGGCATGCACGGCC...GGGAGGCAGAGAAAACATGCAGATCTGAGTCCTGGGGTCTGAACTCAGGCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS-3UTR GCA 90 bp | TGGCAATTTGTCAGAGCTGAAGCAGTAAGTGCCACAAAATCAAAGCCACTCTGCATTCGCTGCGCACAGTaGCACAGAGGGAGCCCGCGG | + |
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Preference number: 4 (lower is better) Translates to: WQFVRAEAVSATKSKPLCIRCAQ*HRGSPR Trigger: CCGCGGGCTCCCTCTGTGGCACTGTGCGCAGCGAAT...GCAGAGTGGCTTTGATTTTGTGGCACTTACTGCTTCAGCTCTGACAAATTGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS-3UTR TCA 90 bp | CAGCTGGTAAAAGTGCTCACTGCCAAGCCTGAGTTCAGACCCCAGGACTCAGATGAGATGTCTGTGACTTaGATAGCTGTGGCTCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: QLVKVLTAKPEFRPQDSDEMSVT*IAVARG Trigger: TCCTCGAGCCACAGCTATTCAAGTCACAGACATCTC...ATCTGAGTCCTGGGGTCTGAACTCAGGCTTGGCAGTGAGCACTTTTACCAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS-3UTR TCA 90 bp | TGGCAATTTGTCAGAGCTGAAGCAGTAAGTGCCACAAAATCAAAGCCACTCTGCGAACCTGGGTCACTTTaGGTTCCCCCTCCGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: WQFVRAEAVSATKSKPLCEPGSL*VPPPSE Trigger: CTCAGACGGAGGGGGAACTCAAAGTGACCCAGGTTC...GCAGAGTGGCTTTGATTTTGTGGCACTTACTGCTTCAGCTCTGACAAATTGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CAA 72 bp | CTCTCAAACATGAGCTTTATAGCTCATGGCATTGAGTaGCAGTGTCCAGGCATTGAGTCCCGCTGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LSNMSFIAHGIE*QCPGIESRCSH Trigger: GTGGCTGCAGCGGGACTCAATGCCTGGACACTGCAACTCAATGCCATGAGCTATAAAGCTCATGTTTGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| 3UTR CAA 72 bp | CATCAGACACTAGAATGTCTACCCAGAACACCAGACTaGGTGACCCTGACATCCAGACAGATGTCCCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: HQTLECLPRTPD*VTLTSRQMSQL Trigger: AAGCTGGGACATCTGTCTGGATGTCAGGGTCACCAAGTCTGGTGTTCTGGGTAGACATTCTAGTGTCTGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS-3UTR CAA 90 bp | TGCTCTGGCCTCACTGGTGACTTCTGGGTGGCTGCATGGTGCTCCATGGCAATTAGGCCGTGCATGCCCTaGATCTCTTCTTTTAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: CSGLTGDFWVAAWCSMAIRPCMP*ISSFSA Trigger: GGCACTAAAAGAAGAGATCAAGGGCATGCACGGCCT...AATTGCCATGGAGCACCATGCAGCCACCCAGAAGTCACCAGTGAGGCCAGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136501.2 |
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| CDS CCA 72 bp | TCGCTGCGCACAGTGCCACAGAGGGAGCTGCAAACATaGGCGTTCCCCGTCCTGCCTTGGCCTGGCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SLRTVPQRELQT*AFPVLPWPGCH Trigger: GTGGCAGCCAGGCCAAGGCAGGACGGGGAACGCCCATGTTTGCAGCTCCCTCTGTGGCACTGTGCGCAGCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120040.8 |
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| CDS GCA 72 bp | CACAGAGGGAGCTGCAAACATGGGCGTTCCCCGTCCTaGCTTGGCCTGGCTGCCACTGCAGGGTCCCCTAAA | + |
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Preference number: 6 (lower is better) Translates to: HRGSCKHGRSPS*LGLAATAGSPK Trigger: TTTAGGGGACCCTGCAGTGGCAGCCAGGCCAAGGCAGGACGGGGAACGCCCATGTTTGCAGCTCCCTCTGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120040.8 |
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| CDS CCA 72 bp | AATACCCCAGGTCGCACTCCTCCGCAGCCAGAACCCTaGGGTGCACAGAACAGGTTGCCCTCACCCCGAACA | + |
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Preference number: 6 (lower is better) Translates to: NTPGRTPPQPEP*GAQNRLPSPRT Trigger: TGTTCGGGGTGAGGGCAACCTGTTCTGTGCACCCCAGGGTTCTGGCTGCGGAGGAGTGCGACCTGGGGTATT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120040.8 |
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