Pregenerated sensors for BOLA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015943Ensembl transcript IDs: ENSMUST00000016087.4, ENSMUST00000107099.8, ENSMUST00000177442.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTaGGCTAGCTTAGCTTTCACCAGAGGTGTCTTTGCCTCTGCATGG | + |
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Preference number: 1 (lower is better) Translates to: LAQARARGREWLLSP*ASLAFTRGVFASAW Trigger: CCATGCAGAGGCAAAGACACCTCTGGTGAAAGCTAAGCTAGCCCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| 3UTR-3UTR GCA 90 bp | GCCCTTTCCGATTCATCAGGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAAGGTGTCTTTGCCTCTaGATGGTGTTCATTAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: ALSDSSGPFSSLAQARARRCLCL*MVFISR Trigger: TCTGCTAATGAACACCATGCAGAGGCAAAGACACCT...TCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCCTGATGAATCGGAAAGGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| 3UTR CCA 72 bp | GCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTaGGCTAGCTTAGCTTTCACCAGAGGTGTCTTTGCC | + |
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Preference number: 3 (lower is better) Translates to: ARARGREWLLSP*ASLAFTRGVFA Trigger: GGCAAAGACACCTCTGGTGAAAGCTAAGCTAGCCCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| 3UTR CCA 72 bp | TCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTaGCTGCTCTCTCCCTGGGCTAGCTTAGCTTTCACC | + |
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Preference number: 3 (lower is better) Translates to: SSLAQARARGRE*LLSPWASLAFT Trigger: GGTGAAAGCTAAGCTAGCCCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| 3UTR-3UTR CAA 90 bp | GGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCACCAGAGGTGTCTTaGCCTCTGCATGGTGTTCAT | + |
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Preference number: 3 (lower is better) Translates to: GPFSSLAQARARGREWLLSPEVS*PLHGVH Trigger: ATGAACACCATGCAGAGGCAAAGACACCTCTGGTGA...GAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| 3UTR CCA 72 bp | AGCTTAGCTTTCACCAGAGGTGTCTTTGCCTCTGCATaGTGTTCATTAGCAGAAAAGGCAGAGCTCCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: SLAFTRGVFASA*CSLAEKAELLV Trigger: GACCAGGAGCTCTGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACCTCTGGTGAAAGCTAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | CTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTGGGCTAGCGGCCACCGCTCTCGTTaGGCAGCTCCAGTACCTCGG | + |
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Preference number: 4 (lower is better) Translates to: LAQARARGREWLLSPWASGHRSR*AAPVPR Trigger: CCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCC...GCTAGCCCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | CTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTGGGCTAGCGCTGCCTGCTGGGACTaGGTGGCCACCGCTCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: LAQARARGREWLLSPWASAACWD*VATALV Trigger: AACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGC...GCTAGCCCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | CTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTGGGCTAGCACCAACCGGTGCCGTTaGAAGGGGCTCATCCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: LAQARARGREWLLSPWASTNRCR*KGLIPS Trigger: CGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGT...GCTAGCCCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | TCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTGGATGCGTCTCGCTGCCTaGTGGGACTGCGTGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: SSLAQARARGREWLLSPWMRLAA*WDCVAT Trigger: GGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCAT...CCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | GGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCGCTGCCTGCTGGGACTaGGTGGCCACCGCTCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: GPFSSLAQARARGREWLLAACWD*VATALV Trigger: AACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGC...GAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | TCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTGGACCAACCGGTGCCGTTaGAAGGGGCTCATCCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SSLAQARARGREWLLSPWTNRCR*KGLIPS Trigger: CGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGT...CCAGGGAGAGAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CCA 90 bp | TCAGGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCGTCTCGCTGCCTGCTaGGACTGCGTGGCCACCGCT | + |
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Preference number: 4 (lower is better) Translates to: SGPFSSLAQARARGREWLRLAAC*DCVATA Trigger: AGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACG...CAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCCTGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CCA 90 bp | GCCCTTTCCGATTCATCAGGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGACGTCTCGCTGCCTGCTaGGACTGCGTGGCCACCGCT | + |
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Preference number: 4 (lower is better) Translates to: ALSDSSGPFSSLAQARARRLAAC*DCVATA Trigger: AGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACG...TCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCCTGATGAATCGGAAAGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CCA 90 bp | AGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAAAGGCAGAGCTCCTGGTCCTGCTGGGACTGCGTaGCCACCGCTCTCGTTGCGC | + |
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Preference number: 4 (lower is better) Translates to: RCLCLCMVFISRKGRAPGPAGTA*PPLSLR Trigger: GCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGG...ACCAGGAGCTCTGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | CAGAGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAAAGGCAGAGCTCCTTGGCCATGGAGACCATaGACTGGGCCGATCGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: QRCLCLCMVFISRKGRAPWPWRP*TGPIAH Trigger: GTGCGCGATCGGCCCAGTGCATGGTCTCCATGGCCA...AGGAGCTCTGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CCA 90 bp | GGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCACTAATGTCCAACTGTaGGTTTTCTCTCCACTGGGC | + |
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Preference number: 4 (lower is better) Translates to: GPFSSLAQARARGREWLLTNVQL*VFSPLG Trigger: GCCCAGTGGAGAGAAAACCCACAGTTGGACATTAGT...GAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | GCTTTCACCAGAGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAAAGGCATGGCCATGGAGACCATaGACTGGGCCGATCGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: AFTRGVFASAWCSLAEKAWPWRP*TGPIAH Trigger: GTGCGCGATCGGCCCAGTGCATGGTCTCCATGGCCA...TGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACCTCTGGTGAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | AGCTTAGCTTTCACCAGAGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAATGCGTCTCGCTGCCTaGTGGGACTGCGTGGCCACC | + |
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Preference number: 4 (lower is better) Translates to: SLAFTRGVFASAWCSLAEMRLAA*WDCVAT Trigger: GGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCAT...TTCTGCTAATGAACACCATGCAGAGGCAAAGACACCTCTGGTGAAAGCTAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CCA 90 bp | TTTATTATCATGGCCCTTTCCGATTCATCAGGACCTTTCTCTAGTCTAGCCCAGCCTGCTGGGACTGCGTaGCCACCGCTCTCGTTGCGC | + |
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Preference number: 4 (lower is better) Translates to: FIIMALSDSSGPFSSLAQPAGTA*PPLSLR Trigger: GCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGG...CTGGGCTAGACTAGAGAAAGGTCCTGATGAATCGGAAAGGGCCATGATAATAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | GGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAAAGGCAGAGCTCCTGGTCTCGGGGCTCAGGGCTTaGTCCAATTTGGCGCGAATA | + |
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Preference number: 4 (lower is better) Translates to: GVFASAWCSLAEKAELLVSGLRA*SNLARI Trigger: TATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGA...GACCAGGAGCTCTGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR GCA 90 bp | TTTATTATCATGGCCCTTTCCGATTCATCAGGACCTTTCTCTAGTCTAGCCCAGTCGGGGCTCAGGGCTTaGTCCAATTTGGCGCGAATA | + |
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Preference number: 4 (lower is better) Translates to: FIIMALSDSSGPFSSLAQSGLRA*SNLARI Trigger: TATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGA...CTGGGCTAGACTAGAGAAAGGTCCTGATGAATCGGAAAGGGCCATGATAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS GCA 90 bp | GCTCACCACCGCCACGCGAAAATGCGTCTCGCTGCCTGCTGGGACTaGGTGGCCACCGCTCTCGTTGCGCAGCTCCAGTACCTCGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: AHHRHAKMRLAACWD*VATALVAQLQYLGA Trigger: AGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 90 bp | ACCACCGCCACGCGAAAATGCGTCTCGCTGCCTGCTGGGACTGCGTaGCCACCGCTCTCGTTGCGCAGCTCCAGTACCTCGGGGCTCAGG | + |
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Preference number: 5 (lower is better) Translates to: TTATRKCVSLPAGTA*PPLSLRSSSTSGLR Trigger: CCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | CCAGCCAGCTCCTCCGACAGTGCCTCGTGGACCAACCGGTGCCGTTaGAAGGGGCTCATCCCCTCGAAACGAGAGCTCACCACCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: PASSSDSASWTNRCR*KGLIPSKRELTTAT Trigger: CGTGGCGGTGGTGAGCTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAGCTGGCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | CTGGATGGCCAGGGCATGTACCGGTCCAGCCAGCTCCTCCGACAGTaGCTCGTGGACCAACCGGTGCCGTTGCAAGGGGCTCATCCCCTC | + |
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Preference number: 5 (lower is better) Translates to: LDGQGMYRSSQLLRQ*LVDQPVPLQGAHPL Trigger: GAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAGCTGGCTGGACCGGTACATGCCCTGGCCATCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | CAGGGCTTGCTCCAATTTGGCGCGAATAGCGGCTTCCACTGGTCCTaGAGCCGCAGATCCCGCGCTGCCCCGCGATACACACGAGCGCGT | + |
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Preference number: 5 (lower is better) Translates to: QGLLQFGANSGFHWS*SRRSRAAPRYTRAR Trigger: ACGCGCTCGTGTGTATCGCGGGGCAGCGCGGGATCTGCGGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | CCTCGAAACGAGAGCTCACCACCGCCACGCGAAAATGCGTCTCGCTaGCTGCTGGGACTGCGTGGCCACCGCTCTCGTTGCGCAGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: PRNESSPPPRENASR*LLGLRGHRSRCAAP Trigger: TGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGCTCTCGTTTCGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | GGGCTCATCCCCTCGAAACGAGAGCTCACCACCGCCACGCGAAAATaGGTCTCGCTGCCTGCTGGGACTGCGTGGCCACCGCTCTCGTTG | + |
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Preference number: 5 (lower is better) Translates to: GLIPSKRELTTATRK*VSLPAGTAWPPLSL Trigger: CAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGCTCTCGTTTCGAGGGGATGAGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | ACCGGTCCAGCCAGCTCCTCCGACAGTGCCTCGTGGACCAACCGGTaGCGTTGCAAGGGGCTCATCCCCTCGAAACGAGAGCTCACCACC | + |
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Preference number: 5 (lower is better) Translates to: TGPASSSDSASWTNR*RCKGLIPSKRELTT Trigger: GGTGGTGAGCTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAGCTGGCTGGACCGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 90 bp | GGGGCTCAGGGCTTGCTCCAATTTGGCGCGAATAGCGGCTTCCACTaGTCCTGCAGCCGCAGATCCCGCGCTGCCCCGCGATACACACGA | + |
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Preference number: 5 (lower is better) Translates to: GAQGLLQFGANSGFH*SCSRRSRAAPRYTR Trigger: TCGTGTGTATCGCGGGGCAGCGCGGGATCTGCGGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 90 bp | ACGAGAGCTCACCACCGCCACGCGAAAATGCGTCTCGCTGCCTGCTaGGACTGCGTGGCCACCGCTCTCGTTGCGCAGCTCCAGTACCTC | + |
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Preference number: 5 (lower is better) Translates to: TRAHHRHAKMRLAAC*DCVATALVAQLQYL Trigger: GAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGCTCTCGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 90 bp | GCCAGGGCATGTACCGGTCCAGCCAGCTCCTCCGACAGTGCCTCGTaGACCAACCGGTGCCGTTGCAAGGGGCTCATCCCCTCGAAACGA | + |
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Preference number: 5 (lower is better) Translates to: ARACTGPASSSDSAS*TNRCRCKGLIPSKR Trigger: TCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAGCTGGCTGGACCGGTACATGCCCTGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | CCACCGCTCTCGTTGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTTaGTCCAATTTGGCGCGAATAGCGGCTTCCACTGGTCCTGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: PPLSLRSSSTSGLRA*SNLARIAASTGPAA Trigger: GGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | AATGCGTCTCGCTGCCTGCTGGGACTGCGTGGCCACCGCTCTCGTTaGGCAGCTCCAGTACCTCGGGGCTCAGGGCTTGCTCCAATTTGG | + |
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Preference number: 5 (lower is better) Translates to: NASRCLLGLRGHRSR*AAPVPRGSGLAPIW Trigger: CCAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 90 bp | GAAACGAGAGCTCACCACCGCCACGCGAAAATGCGTCTCGCTGCCTaGTGGGACTGCGTGGCCACCGCTCTCGTTGCGCAGCTCCAGTAC | + |
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Preference number: 5 (lower is better) Translates to: ETRAHHRHAKMRLAA*WDCVATALVAQLQY Trigger: GTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGCTCTCGTTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 90 bp | CCAACTGTGGGTTTTCTCTCCACTGGGCGGGGGTCTTCGCCTGGATaGCCAGGGCATGTACCGGTCCAGCCAGCTCCTCCGACAGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: PTVGFLSTGRGSSPG*PGHVPVQPAPPTVP Trigger: AGGCACTGTCGGAGGAGCTGGCTGGACCGGTACATGCCCTGGCCATCCAGGCGAAGACCCCCGCCCAGTGGAGAGAAAACCCACAGTTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 90 bp | ATGTCCAACTGTGGGTTTTCTCTCCACTGGGCGGGGGTCTTCGCCTaGATGGCCAGGGCATGTACCGGTCCAGCCAGCTCCTCCGACAGT | + |
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Preference number: 5 (lower is better) Translates to: MSNCGFSLHWAGVFA*MARACTGPASSSDS Trigger: ACTGTCGGAGGAGCTGGCTGGACCGGTACATGCCCTGGCCATCCAGGCGAAGACCCCCGCCCAGTGGAGAGAAAACCCACAGTTGGACAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS-3UTR CAA 90 bp | GGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCCTCGGGGCTCAGGGCTaGCTCCAATTTGGCGCGAAT | + |
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Preference number: 5 (lower is better) Translates to: GPFSSLAQARARGREWLLLGAQG*LQFGAN Trigger: ATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAG...GAGCAGCCACTCCCTCCCTCTTGCCCTTGCCTGGGCTAGACTAGAGAAAGGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CAA 90 bp | GCTTTCACCAGAGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAAAGGCATGGCCACCGCTCTCGTaGCGCAGCTCCAGTACCTCG | + |
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Preference number: 5 (lower is better) Translates to: AFTRGVFASAWCSLAEKAWPPLS*RSSSTS Trigger: CGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCA...TGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACCTCTGGTGAAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CAA 90 bp | AGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAAAAGGCAGAGCTCCTGGTCTCGGGGCTCAGGGCTaGCTCCAATTTGGCGCGAAT | + |
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Preference number: 5 (lower is better) Translates to: RCLCLCMVFISRKGRAPGLGAQG*LQFGAN Trigger: ATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAG...ACCAGGAGCTCTGCCTTTTCTGCTAATGAACACCATGCAGAGGCAAAGACACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS-3UTR CAA 90 bp | AGCTTAGCTTTCACCAGAGGTGTCTTTGCCTCTGCATGGTGTTCATTAGCAGAATGGCCACCGCTCTCGTaGCGCAGCTCCAGTACCTCG | + |
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Preference number: 5 (lower is better) Translates to: SLAFTRGVFASAWCSLAEWPPLS*RSSSTS Trigger: CGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCA...TTCTGCTAATGAACACCATGCAGAGGCAAAGACACCTCTGGTGAAAGCTAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 |
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| CDS CCA 72 bp | CAGATCCCGCGCTGCCCCGCGATACACACGAGCGCGTaGCCATGGAGACCATGCACTGGGCCGATCGCGCAC | + |
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Preference number: 6 (lower is better) Translates to: QIPRCPAIHTSA*PWRPCTGPIAH Trigger: GTGCGCGATCGGCCCAGTGCATGGTCTCCATGGCCACGCGCTCGTGTGTATCGCGGGGCAGCGCGGGATCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 72 bp | TCGCTGCCTGCTGGGACTGCGTGGCCACCGCTCTCGTaGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTTGC | + |
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Preference number: 6 (lower is better) Translates to: SLPAGTAWPPLS*RSSSTSGLRAC Trigger: GCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | GCTCACCACCGCCACGCGAAAATGCGTCTCGCTGCCTaGTGGGACTGCGTGGCCACCGCTCTCGTTGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: AHHRHAKMRLAA*WDCVATALVAQ Trigger: CTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 72 bp | CACCACCGCCACGCGAAAATGCGTCTCGCTGCCTGCTaGGACTGCGTGGCCACCGCTCTCGTTGCGCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: HHRHAKMRLAAC*DCVATALVAQL Trigger: GAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | CGCCACGCGAAAATGCGTCTCGCTGCCTGCTGGGACTaGGTGGCCACCGCTCTCGTTGCGCAGCTCCAGTAC | + |
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Preference number: 6 (lower is better) Translates to: RHAKMRLAACWD*VATALVAQLQY Trigger: GTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | GAGAGCTCACCACCGCCACGCGAAAATGCGTCTCGCTaGCTGCTGGGACTGCGTGGCCACCGCTCTCGTTGC | + |
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Preference number: 6 (lower is better) Translates to: ESSPPPRENASR*LLGLRGHRSRC Trigger: GCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGCTCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | CCCTCGAAACGAGAGCTCACCACCGCCACGCGAAAATaGGTCTCGCTGCCTGCTGGGACTGCGTGGCCACCG | + |
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Preference number: 6 (lower is better) Translates to: PSKRELTTATRK*VSLPAGTAWPP Trigger: CGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGTGGCGGTGGTGAGCTCTCGTTTCGAGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 72 bp | GGCTTGCTCCAATTTGGCGCGAATAGCGGCTTCCACTaGTCCTGCAGCCGCAGATCCCGCGCTGCCCCGCGA | + |
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Preference number: 6 (lower is better) Translates to: GLLQFGANSGFH*SCSRRSRAAPR Trigger: TCGCGGGGCAGCGCGGGATCTGCGGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 72 bp | GGTTTTCTCTCCACTGGGCGGGGGTCTTCGCCTGGATaGCCAGGGCATGTACCGGTCCAGCCAGCTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: GFLSTGRGSSPG*PGHVPVQPAPP Trigger: CGGAGGAGCTGGCTGGACCGGTACATGCCCTGGCCATCCAGGCGAAGACCCCCGCCCAGTGGAGAGAAAACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 90 bp | TCCAGCCAGCTCCTCCGACAGTGCCTCGTGGACCAACCGGTGCCGTaGCAAGGGGCTCATCCCCTCGAAACGAGAGCTCACCACCGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SSQLLRQCLVDQPVP*QGAHPLETRAHHRH Trigger: GTGGCGGTGGTGAGCTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAGCTGGCTGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | GCCAGCTCCTCCGACAGTGCCTCGTGGACCAACCGGTaGCGTTGCAAGGGGCTCATCCCCTCGAAACGAGAG | + |
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Preference number: 6 (lower is better) Translates to: ASSSDSASWTNR*RCKGLIPSKRE Trigger: CTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAGCTGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 72 bp | ACGCGAAAATGCGTCTCGCTGCCTGCTGGGACTGCGTaGCCACCGCTCTCGTTGCGCAGCTCCAGTACCTCG | + |
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Preference number: 6 (lower is better) Translates to: TRKCVSLPAGTA*PPLSLRSSSTS Trigger: CGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTTTCGCGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CCA 72 bp | TGTGGGTTTTCTCTCCACTGGGCGGGGGTCTTCGCCTaGATGGCCAGGGCATGTACCGGTCCAGCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: CGFSLHWAGVFA*MARACTGPASS Trigger: GGAGCTGGCTGGACCGGTACATGCCCTGGCCATCCAGGCGAAGACCCCCGCCCAGTGGAGAGAAAACCCACA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 90 bp | GCCACCGCTCTCGTTGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTaGCTCCAATTTGGCGCGAATAGCGGCTTCCACTGGTCCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: ATALVAQLQYLGAQG*LQFGANSGFHWSCS Trigger: GCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | CTCCAATTTGGCGCGAATAGCGGCTTCCACTGGTCCTaGAGCCGCAGATCCCGCGCTGCCCCGCGATACACA | + |
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Preference number: 6 (lower is better) Translates to: LQFGANSGFHWS*SRRSRAAPRYT Trigger: TGTGTATCGCGGGGCAGCGCGGGATCTGCGGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS GCA 72 bp | TCCTCCGACAGTGCCTCGTGGACCAACCGGTGCCGTTaGAAGGGGCTCATCCCCTCGAAACGAGAGCTCACC | + |
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Preference number: 6 (lower is better) Translates to: SSDSASWTNRCR*KGLIPSKRELT Trigger: GGTGAGCTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 72 bp | CTCCTCCGACAGTGCCTCGTGGACCAACCGGTGCCGTaGCAAGGGGCTCATCCCCTCGAAACGAGAGCTCAC | + |
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Preference number: 6 (lower is better) Translates to: LLRQCLVDQPVP*QGAHPLETRAH Trigger: GTGAGCTCTCGTTTCGAGGGGATGAGCCCCTTGCAACGGCACCGGTTGGTCCACGAGGCACTGTCGGAGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 90 bp | TCGTTGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTTGCTCCAATTaGGCGCGAATAGCGGCTTCCACTGGTCCTGCAGCCGCAGATCCC | + |
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Preference number: 6 (lower is better) Translates to: SLRSSSTSGLRACSN*ARIAASTGPAAADP Trigger: GGGATCTGCGGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 90 bp | AAATGCGTCTCGCTGCCTGCTGGGACTGCGTGGCCACCGCTCTCGTaGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTTGCTCCAATTTG | + |
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Preference number: 6 (lower is better) Translates to: KCVSLPAGTAWPPLS*RSSSTSGLRACSNL Trigger: CAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAGAGCGGTGGCCACGCAGTCCCAGCAGGCAGCGAGACGCATTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 72 bp | AGCTCCAGTACCTCGGGGCTCAGGGCTTGCTCCAATTaGGCGCGAATAGCGGCTTCCACTGGTCCTGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SSSTSGLRACSN*ARIAASTGPAA Trigger: GGCTGCAGGACCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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| CDS CAA 72 bp | CTCGTTGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTaGCTCCAATTTGGCGCGAATAGCGGCTTCCACTGG | + |
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Preference number: 6 (lower is better) Translates to: LVAQLQYLGAQG*LQFGANSGFHW Trigger: CCAGTGGAAGCCGCTATTCGCGCCAAATTGGAGCAAGCCCTGAGCCCCGAGGTACTGGAGCTGCGCAACGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016087.4 ENSMUST00000107099.8 ENSMUST00000177442.2 |
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