Pregenerated sensors for BOD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044502Ensembl transcript IDs: ENSMUST00000058060.14, ENSMUST00000109415.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTaGGAGCGTGTGAGTGCTGAGTTCCGTGGGACAGCCACTCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: SLLTWMLGSAGTEDT*ERVSAEFRGTATLL Trigger: CAGAAGAGTGGCTGTCCCACGGAACTCAGCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| 3UTR TCA 90 bp | GAGCAAGTACGGGTAACTGTCCCACCACCAAACTTGCTCTCCATCTaGTGTGGACACCACCGCAGTCAAGGCCAAAATCTTGACATCAGT | + |
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Preference number: 1 (lower is better) Translates to: EQVRVTVPPPNLLSI*CGHHRSQGQNLDIS Trigger: ACTGATGTCAAGATTTTGGCCTTGACTGCGGTGGTGTCCACATCAGATGGAGAGCAAGTTTGGTGGTGGGACAGTTACCCGTACTTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR GCA 90 bp | CAAGCACAGGAAGGTCACAACAACCTTAAGGCTACTGATGCTAACTaGCACACGCTGCAGTCTGTAACTCTAGCATATCAAAACCCACCA | + |
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Preference number: 1 (lower is better) Translates to: QAQEGHNNLKATDAN*HTLQSVTLAYQNPP Trigger: TGGTGGGTTTTGATATGCTAGAGTTACAGACTGCAGCGTGTGGCAGTTAGCATCAGTAGCCTTAAGGTTGTTGTGACCTTCCTGTGCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR-3UTR CCA 90 bp | GCACCCAGAGTGACTCATCCCTGCGGATGGGGAGGTGCCAGGACAGAAGCTGTGGCTCTCCATCTGATGTaGACACCACCGCAGTCAAGG | + |
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Preference number: 2 (lower is better) Translates to: APRVTHPCGWGGARTEAVALHLM*TPPQSR Trigger: CCTTGACTGCGGTGGTGTCCACATCAGATGGAGAGC...CACAGCTTCTGTCCTGGCACCTCCCCATCCGCAGGGATGAGTCACTCTGGGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR-3UTR TCA 90 bp | CAGCTTTCCATGCACCCCAAGTCTCAGCTTCCTCACTCACTCCAGGGCTCCAACAACTTGCTCTCCATCTaGTGTGGACACCACCGCAGT | + |
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Preference number: 2 (lower is better) Translates to: QLSMHPKSQLPHSLQGSNNLLSI*CGHHRS Trigger: ACTGCGGTGGTGTCCACATCAGATGGAGAGCAAGTT...GTTGGAGCCCTGGAGTGAGTGAGGAAGCTGAGACTTGGGGTGCATGGAAAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR GCA 72 bp | GGCACCCAGAGTGACTCATCCCTGCGGATGGGGAGGTaGCAGGACAGAAGCTGTGCAGCTTTCCATGCACCC | + |
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Preference number: 3 (lower is better) Translates to: GTQSDSSLRMGR*QDRSCAAFHAP Trigger: GGGTGCATGGAAAGCTGCACAGCTTCTGTCCTGGCACCTCCCCATCCGCAGGGATGAGTCACTCTGGGTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR GCA 72 bp | ATCCCTGCGGATGGGGAGGTGCCAGGACAGAAGCTGTaGAGCTTTCCATGCACCCCAAGTCTCAGCTTCCTC | + |
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Preference number: 3 (lower is better) Translates to: IPADGEVPGQKL*SFPCTPSLSFL Trigger: GAGGAAGCTGAGACTTGGGGTGCATGGAAAGCTGCACAGCTTCTGTCCTGGCACCTCCCCATCCGCAGGGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR CCA 72 bp | ACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTaGGAGCGTGTGAGTGCTGAGTTCCGTGGGACAGCC | + |
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Preference number: 3 (lower is better) Translates to: TWMLGSAGTEDT*ERVSAEFRGTA Trigger: GGCTGTCCCACGGAACTCAGCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| 3UTR GCA 72 bp | ACCGTGAGGTTCTCTGTTGACTTGGATGCTTGGCTCTaGTGGTACAGAGGACACTTGGGAGCGTGTGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: TVRFSVDLDAWL*WYRGHLGACEC Trigger: GCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACCTCACGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| 3UTR TCA 72 bp | CGGGTAACTGTCCCACCACCAAACTTGCTCTCCATCTaGTGTGGACACCACCGCAGTCAAGGCCAAAATCTT | + |
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Preference number: 3 (lower is better) Translates to: RVTVPPPNLLSI*CGHHRSQGQNL Trigger: AAGATTTTGGCCTTGACTGCGGTGGTGTCCACATCAGATGGAGAGCAAGTTTGGTGGTGGGACAGTTACCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR TCA 90 bp | TCTGCTGGTACAGAGGACACTTGGGAGCGTGTGAGTGCTGAGTTCCGTGGGACATCCAACATACCTGACTaGACCACGCTCTGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: SAGTEDTWERVSAEFRGTSNIPD*TTLCLS Trigger: GCTGAGGCAGAGCGTGGTTCAGTCAGGTATGTTGGA...TGTCCCACGGAACTCAGCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR TCA 90 bp | CAGCTTTCCATGCACCCCAAGTCTCAGCTTCCTCACTCACTCCAGGGCTCCAACTGCTTCCAACATACCTaGCTGAACCACGCTCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: QLSMHPKSQLPHSLQGSNCFQHT*LNHALP Trigger: AGGCAGAGCGTGGTTCAGTCAGGTATGTTGGAAGCA...GTTGGAGCCCTGGAGTGAGTGAGGAAGCTGAGACTTGGGGTGCATGGAAAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR TCA 90 bp | CACCACCAAACTTGCTCTCCATCTGATGTGGACACCACCGCAGTCAAGGCCAAATCCAACATACCTGACTaGACCACGCTCTGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: HHQTCSPSDVDTTAVKAKSNIPD*TTLCLS Trigger: GCTGAGGCAGAGCGTGGTTCAGTCAGGTATGTTGGA...TTTGGCCTTGACTGCGGTGGTGTCCACATCAGATGGAGAGCAAGTTTGGTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR TCA 90 bp | GGTTCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGTGCTTCCAACATACCTaGCTGAACCACGCTCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: GSLLTWMLGSAGTEDTWECFQHT*LNHALP Trigger: AGGCAGAGCGTGGTTCAGTCAGGTATGTTGGAAGCA...CTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR GCA 90 bp | CAGCTTTCCATGCACCCCAAGTCTCAGCTTCCTCACTCACTCCAGGGCTCCAACCAGGAACTCATGGATTaGTCTCTCTATCTGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: QLSMHPKSQLPHSLQGSNQELMD*SLYLWP Trigger: AGGCCACAGATAGAGAGAGCAATCCATGAGTTCCTG...GTTGGAGCCCTGGAGTGAGTGAGGAAGCTGAGACTTGGGGTGCATGGAAAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CCA 90 bp | ACCCAGAGTGACTCATCCCTGCGGATGGGGAGGTGCCAGGACAGAAGCTGTGCAAGATGTGGTTTAGTTTaGGGTCTACCACTTGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TQSDSSLRMGRCQDRSCARCGLV*GLPLGK Trigger: TTTCCCAAGTGGTAGACCCCAAACTAAACCACATCT...TGCACAGCTTCTGTCCTGGCACCTCCCCATCCGCAGGGATGAGTCACTCTGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR TCA 90 bp | TCTGCTGGTACAGAGGACACTTGGGAGCGTGTGAGTGCTGAGTTCCGTGGGACATCTCTATCTGTGGCCTaGAGATGTGGTTTAGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: SAGTEDTWERVSAEFRGTSLSVA*RCGLVW Trigger: CCAAACTAAACCACATCTTCAGGCCACAGATAGAGA...TGTCCCACGGAACTCAGCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CCA 90 bp | GCTTTCCATGCACCCCAAGTCTCAGCTTCCTCACTCACTCCAGGGCTCCAACAATTGGGGTCTACCACTTaGGAAATGATCCTGTCCACT | + |
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Preference number: 4 (lower is better) Translates to: AFHAPQVSASSLTPGLQQLGSTT*EMILST Trigger: AGTGGACAGGATCATTTCCCAAGTGGTAGACCCCAA...TTGTTGGAGCCCTGGAGTGAGTGAGGAAGCTGAGACTTGGGGTGCATGGAAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR GCA 90 bp | GGTTCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGCAGGAACTCATGGATTaGTCTCTCTATCTGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: GSLLTWMLGSAGTEDTWEQELMD*SLYLWP Trigger: AGGCCACAGATAGAGAGAGCAATCCATGAGTTCCTG...CTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CCA 90 bp | GGTTCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGTTGGGGTCTACCACTTaGGAAATGATCCTGTCCACT | + |
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Preference number: 4 (lower is better) Translates to: GSLLTWMLGSAGTEDTWELGSTT*EMILST Trigger: AGTGGACAGGATCATTTCCCAAGTGGTAGACCCCAA...CTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CCA 90 bp | TGTCCTGACCAGCTAGCCTCCAGCCTGGCTTCTGTATACCACAAAATGCCAGCAGCAGCCAGGAACTCATaGATTGCTCTCTCTATCTGT | + |
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Preference number: 4 (lower is better) Translates to: CPDQLASSLASVYHKMPAAARNS*IALSIC Trigger: ACAGATAGAGAGAGCAATCCATGAGTTCCTGGCTGC...TGCTGGCATTTTGTGGTATACAGAAGCCAGGCTGGAGGCTAGCTGGTCAGGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CCA 90 bp | TCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGCGTGCAGCCAGGAACTCATaGATTGCTCTCTCTATCTGT | + |
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Preference number: 4 (lower is better) Translates to: SLLTWMLGSAGTEDTWERAARNS*IALSIC Trigger: ACAGATAGAGAGAGCAATCCATGAGTTCCTGGCTGC...ACGCTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR TCA 90 bp | AACTCTAGCATATCAAAACCCACCATCAAACAGCTGCTCCCACTGACCCTCGCTCTACCACTTGGGAAATaGTCCTGTCCACTCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: NSSISKPTIKQLLPLTLALPLGK*SCPLLL Trigger: AAGCAGGAGTGGACAGGATCATTTCCCAAGTGGTAG...AGCGAGGGTCAGTGGGAGCAGCTGTTTGATGGTGGGTTTTGATATGCTAGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR TCA 90 bp | CACCACCAAACTTGCTCTCCATCTGATGTGGACACCACCGCAGTCAAGGCCAAATCTCTATCTGTGGCCTaGAGATGTGGTTTAGTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HHQTCSPSDVDTTAVKAKSLSVA*RCGLVW Trigger: CCAAACTAAACCACATCTTCAGGCCACAGATAGAGA...TTTGGCCTTGACTGCGGTGGTGTCCACATCAGATGGAGAGCAAGTTTGGTGGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CCA 90 bp | TCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGCGTGTAGCCCATTTCGCAACTaGTTCTTGTTCATTGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SVDLDAWLCWYRGHLGACSPFRN*FLFIAG Trigger: TCCTGCAATGAACAAGAACCAGTTGCGAAATGGGCT...ACACGCTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR GCA 90 bp | ATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGCGTGTGAGTGCTGAGTTCCTGGTTCTTGTTCATTaGAGGATTCCATTCCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: MLGSAGTEDTWERVSAEFLVLVH*RIPFLF Trigger: AAACAGGAATGGAATCCTGCAATGAACAAGAACCAG...GAACTCAGCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CCA 90 bp | GCTTCCTCACTCACTCCAGGGCTCCAACAAGGAAAGGAAACCATTAAGATTCCCAGCCCATTTCGCAACTaGTTCTTGTTCATTGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ASSLTPGLQQGKETIKIPSPFRN*FLFIAG Trigger: TCCTGCAATGAACAAGAACCAGTTGCGAAATGGGCT...GGGAATCTTAATGGTTTCCTTTCCTTGTTGGAGCCCTGGAGTGAGTGAGGAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| 3UTR CAA 72 bp | TCTGATGTGGACACCACCGCAGTCAAGGCCAAAATCTaGACATCAGTAATGACATGGCCGACTAAAGTTGTA | + |
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Preference number: 4 (lower is better) Translates to: SDVDTTAVKAKI*TSVMTWPTKVV Trigger: TACAACTTTAGTCGGCCATGTCATTACTGATGTCAAGATTTTGGCCTTGACTGCGGTGGTGTCCACATCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR GCA 90 bp | GGGCTCCAACAAGGAAAGGAAACCATTAAGATTCCCAAGCACAGGAAGGTCACACTGGTTCTTGTTCATTaGAGGATTCCATTCCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: GLQQGKETIKIPKHRKVTLVLVH*RIPFLF Trigger: AAACAGGAATGGAATCCTGCAATGAACAAGAACCAG...TGTGACCTTCCTGTGCTTGGGAATCTTAATGGTTTCCTTTCCTTGTTGGAGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CAA 90 bp | CAGCTTTCCATGCACCCCAAGTCTCAGCTTCCTCACTCACTCCAGGGCTCCAACAACAGCCCACGGCTCTaGAGCTGCTCCACTATGAGA | + |
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Preference number: 5 (lower is better) Translates to: QLSMHPKSQLPHSLQGSNNSPRL*SCSTMR Trigger: TCTCATAGTGGAGCAGCTCAAGAGCCGTGGGCTGTT...GTTGGAGCCCTGGAGTGAGTGAGGAAGCTGAGACTTGGGGTGCATGGAAAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CAA 90 bp | GGTTCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGAACAGCCCACGGCTCTaGAGCTGCTCCACTATGAGA | + |
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Preference number: 5 (lower is better) Translates to: GSLLTWMLGSAGTEDTWENSPRL*SCSTMR Trigger: TCTCATAGTGGAGCAGCTCAAGAGCCGTGGGCTGTT...CTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CAA 90 bp | ACCCAGAGTGACTCATCCCTGCGGATGGGGAGGTGCCAGGACAGAAGCTGTGCATTTCGCAACTGGTTCTaGTTCATTGCAGGATTCCAT | + |
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Preference number: 5 (lower is better) Translates to: TQSDSSLRMGRCQDRSCAFRNWF*FIAGFH Trigger: ATGGAATCCTGCAATGAACAAGAACCAGTTGCGAAA...TGCACAGCTTCTGTCCTGGCACCTCCCCATCCGCAGGGATGAGTCACTCTGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CAA 90 bp | GGTTCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGCCAGGAACTCATGGATaGCTCTCTCTATCTGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: GSLLTWMLGSAGTEDTWEPGTHG*LSLSVA Trigger: GGCCACAGATAGAGAGAGCAATCCATGAGTTCCTGG...CTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CAA 90 bp | TCTGCTGGTACAGAGGACACTTGGGAGCGTGTGAGTGCTGAGTTCCGTGGGACAACTGGTTCTTGTTCATaGCAGGATTCCATTCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: SAGTEDTWERVSAEFRGTTGSCS*QDSIPV Trigger: AACAGGAATGGAATCCTGCAATGAACAAGAACCAGT...TGTCCCACGGAACTCAGCACTCACACGCTCCCAAGTGTCCTCTGTACCAGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CAA 90 bp | CACCCCAAGTCTCAGCTTCCTCACTCACTCCAGGGCTCCAACAAGGAAAGGAAAAAGATGTGGTTTAGTTaGGGGTCTACCACTTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: HPKSQLPHSLQGSNKERKKMWFS*GSTTWE Trigger: TTCCCAAGTGGTAGACCCCAAACTAAACCACATCTT...TTTCCTTTCCTTGTTGGAGCCCTGGAGTGAGTGAGGAAGCTGAGACTTGGGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CAA 90 bp | GGTTCTCTGTTGACTTGGATGCTTGGCTCTGCTGGTACAGAGGACACTTGGGAGAAGATGTGGTTTAGTTaGGGGTCTACCACTTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: GSLLTWMLGSAGTEDTWEKMWFS*GSTTWE Trigger: TTCCCAAGTGGTAGACCCCAAACTAAACCACATCTT...CTCCCAAGTGTCCTCTGTACCAGCAGAGCCAAGCATCCAAGTCAACAGAGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109415.2 |
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| CDS-3UTR CAA 90 bp | GTCTGTAACTCTAGCATATCAAAACCCACCATCAAACAGCTGCTCCCACTGACCACTGGTTCTTGTTCATaGCAGGATTCCATTCCTGTT | + |
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Preference number: 5 (lower is better) Translates to: VCNSSISKPTIKQLLPLTTGSCS*QDSIPV Trigger: AACAGGAATGGAATCCTGCAATGAACAAGAACCAGT...GGTCAGTGGGAGCAGCTGTTTGATGGTGGGTTTTGATATGCTAGAGTTACAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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| CDS-3UTR CAA 90 bp | AATGCCAGCACTGATATCCACATGCAGTGTCTGAGTTCAAGTATAAAAGTTCGTCCAGGAACTCATGGATaGCTCTCTCTATCTGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: NASTDIHMQCLSSSIKVRPGTHG*LSLSVA Trigger: GGCCACAGATAGAGAGAGCAATCCATGAGTTCCTGG...ACGAACTTTTATACTTGAACTCAGACACTGCATGTGGATATCAGTGCTGGCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058060.14 |
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