Pregenerated sensors for BNIPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028115Ensembl transcript IDs: ENSMUST00000098871.11, ENSMUST00000107195.9, ENSMUST00000125515.3, ENSMUST00000137250.9
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTACAGCTAAAGCAGAATTAAAACTCAGAGCCTTACACTTCCAATaGCACACAGCCTTCTTTTTGGACAGCCGAAATGCAAGCCACCCC | + |
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Preference number: 1 (lower is better) Translates to: FTAKAELKLRALHFQ*HTAFFLDSRNASHP Trigger: GGGGTGGCTTGCATTTCGGCTGTCCAAAAAGAAGGCTGTGTGGCATTGGAAGTGTAAGGCTCTGAGTTTTAATTCTGCTTTAGCTGTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR TCA 90 bp | GGGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCGCCCTCAGGATGAGATaGGACATAGCTCCCCCATGC | + |
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Preference number: 2 (lower is better) Translates to: GLAFQDFASWLLGSRQTGALRMR*DIAPPC Trigger: GCATGGGGGAGCTATGTCTCATCTCATCCTGAGGGC...GCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAACCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR TCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCGCCCTCAGGATGAGATaGGACATAGCTCCCCCATGC | + |
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Preference number: 2 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSALRMR*DIAPPC Trigger: GCATGGGGGAGCTATGTCTCATCTCATCCTGAGGGC...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR GCA 90 bp | GTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGGCCTTACACTTCCAATaGCACACAGCCTTCTTTTTG | + |
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Preference number: 2 (lower is better) Translates to: VGFSRFCKLAPGLPADRLALHFQ*HTAFFL Trigger: CAAAAAGAAGGCTGTGTGGCATTGGAAGTGTAAGGC...CAGCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR TCA 90 bp | GGGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTACAGAGAAGGAAAATaGGACCCACATATTTTACAG | + |
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Preference number: 2 (lower is better) Translates to: GLAFQDFASWLLGSRQTGYREGK*DPHILQ Trigger: CTGTAAAATATGTGGGTCTCATTTTCCTTCTCTGTA...GCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR CCA 90 bp | TTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGCAGGCTGGCTGTGGCTGCTaGTTAAGCCTTCCATCCACC | + |
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Preference number: 2 (lower is better) Translates to: FTESENTGFDSSSQDHRQAGCGC*LSLPST Trigger: GGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGC...CTGCCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR CCA 90 bp | GAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGTCCCGGCAGACAGGCTaGCTGTGGCTGCTGGTTAAG | + |
|
Preference number: 2 (lower is better) Translates to: EFTESENTGFDSSSQDHRSRQTG*LWLLVK Trigger: CTTAACCAGCAGCCACAGCCAGCCTGTCTGCCGGGA...CCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR TCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCTACAGAGAAGGAAAATaGGACCCACATATTTTACAG | + |
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Preference number: 2 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSYREGK*DPHILQ Trigger: CTGTAAAATATGTGGGTCTCATTTTCCTTCTCTGTA...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR GCA 90 bp | AGTTTATTAAAGGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGGCCTTACACTTCCAATaGCACACAGCCTTCTTTTTG | + |
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Preference number: 2 (lower is better) Translates to: SLLKVTGLNLLRVKTQVLALHFQ*HTAFFL Trigger: CAAAAAGAAGGCTGTGTGGCATTGGAAGTGTAAGGC...CAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACCTGTGACCTTTAATAAACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| 3UTR-3UTR CAA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCCCCTTAAATCCCAGCTaGAAGGCAGTGTCCAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSPLNPS*KAVSRS Trigger: ACTTCTGGACACTGCCTTCAAGCTGGGATTTAAGGG...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR CAA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCCACACAGCCTTCTTTTaGGACAGCCGAAATGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSHTAFF*DSRNAS Trigger: GCTTGCATTTCGGCTGTCCAAAAAGAAGGCTGTGTG...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR CAA 90 bp | GAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGTGGCTTTTCAAGATTTaGCAAGCTGGCTCCTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: EFTESENTGFDSSSQDHRWLFKI*QAGSWA Trigger: AGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCA...CCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR GCA 72 bp | AAAGCAGAATTAAAACTCAGAGCCTTACACTTCCAATaGCACACAGCCTTCTTTTTGGACAGCCGAAATGCA | + |
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Preference number: 3 (lower is better) Translates to: KAELKLRALHFQ*HTAFFLDSRNA Trigger: TGCATTTCGGCTGTCCAAAAAGAAGGCTGTGTGGCATTGGAAGTGTAAGGCTCTGAGTTTTAATTCTGCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| 3UTR-3UTR CAA 90 bp | AGTTTATTAAAGGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGCCCTTAAATCCCAGCTaGAAGGCAGTGTCCAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: SLLKVTGLNLLRVKTQVLPLNPS*KAVSRS Trigger: ACTTCTGGACACTGCCTTCAAGCTGGGATTTAAGGG...CAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACCTGTGACCTTTAATAAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GGGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCGGGGGTGCCTGCCTGTaGGCCTCTCTGAGGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: GLAFQDFASWLLGSRQTGGGACL*ASLRVF Trigger: GAAGACCCTCAGAGAGGCTCACAGGCAGGCACCCCC...GCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAACCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GGGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCCCGGCCCAGTCTTTCTaGTGCCTCACTGGCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GLAFQDFASWLLGSRQTGPAQSF*CLTGPQ Trigger: CTGGGGGCCAGTGAGGCAGCAGAAAGACTGGGCCGG...GCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAACCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGACTGCTAGGGGGTGCCTGCCTGTaGGCCTCTCTGAGGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: AGCGCWLSLPSTSPQRLLGGACL*ASLRVF Trigger: GAAGACCCTCAGAGAGGCTCACAGGCAGGCACCCCC...TAGCAGTCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGGGGGCACTTGGGCCCTaGTGGTGCCTCCACTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: VGFSRFCKLAPGLPADRLGALGP*WCLHSS Trigger: ACTTGAGTGGAGGCACCAGCAGGGCCCAAGTGCCCC...CAGCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | GTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGTCTAGCGAGATGAGCTaGGCCAGCTCTCCGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VGFSRFCKLAPGLPADRLSSEMS*ASSPRL Trigger: CAGCCTCGGAGAGCTGGCCCAGCTCATCTCGCTAGA...CAGCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | AGACAGGCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGAACTCAGCTGCCATTCTaGGGCGGAAAGACGCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: RQAGCGCWLSLPSTSPQRTQLPF*GGKTLP Trigger: CGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGT...TCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGCCTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | AGACAGGCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGAGCACTTGGGCCCTGCTaGTGCCTCCACTCAAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: RQAGCGCWLSLPSTSPQRALGPC*CLHSSE Trigger: TTCACTTGAGTGGAGGCACCAGCAGGGCCCAAGTGC...TCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGCCTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | AGACAGGCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGAAACACTCTCCAGCGATaGCCGTCTTCTCCAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: RQAGCGCWLSLPSTSPQRNTLQR*PSSPAT Trigger: TGTGGCTGGAGAAGACGGTCATCGCTGGAGAGTGTT...TCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGCCTGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GGGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCAGGTGTAGTTGGGGATaGTGCTTCGGGGTAGATAGC | + |
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Preference number: 4 (lower is better) Translates to: GLAFQDFASWLLGSRQTGRCSWG*CFGVDS Trigger: GCTATCTACCCCGAAGCAGCATCCCCAACTACACCT...GCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGACTGCTAGAAGGGCCGAACCAGTaGCAGGAAGGCCTTCACATA | + |
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Preference number: 4 (lower is better) Translates to: AGCGCWLSLPSTSPQRLLEGPNQ*QEGLHI Trigger: TATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCTTC...TAGCAGTCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGACTGCTACAGCTGCTCAGAGTCTaGTGGTGTCTCCAACTCATC | + |
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Preference number: 4 (lower is better) Translates to: AGCGCWLSLPSTSPQRLLQLLRV*WCLQLI Trigger: GATGAGTTGGAGACACCATCAGACTCTGAGCAGCTG...TAGCAGTCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGACTGCTATGTAGTTGGGGATGCTaGTTCGGGGTAGATAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: AGCGCWLSLPSTSPQRLLCSWGC*FGVDSR Trigger: CCTGCTATCTACCCCGAAGCAGCATCCCCAACTACA...TAGCAGTCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGTGTAGTTGGGGATGCTaGTTCGGGGTAGATAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: VGFSRFCKLAPGLPADRLCSWGC*FGVDSR Trigger: CCTGCTATCTACCCCGAAGCAGCATCCCCAACTACA...CAGCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGAGGTGTAGTTGGGGATaGTGCTTCGGGGTAGATAGC | + |
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Preference number: 4 (lower is better) Translates to: VGFSRFCKLAPGLPADRLRCSWG*CFGVDS Trigger: GCTATCTACCCCGAAGCAGCATCCCCAACTACACCT...CAGCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCCTTGCTCTAGCGAGATaGGCTGGGCCAGCTCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSLALAR*AGPALR Trigger: TCGGAGAGCTGGCCCAGCTCATCTCGCTAGAGCAAG...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCTCTAGCGAGATGAGCTaGGCCAGCTCTCCGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSSSEMS*ASSPRL Trigger: CAGCCTCGGAGAGCTGGCCCAGCTCATCTCGCTAGA...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | AGACAGGCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGATCTTATAGGGCTCAATaGTGGTCATGTCCACTCGCT | + |
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Preference number: 4 (lower is better) Translates to: RQAGCGCWLSLPSTSPQRSYRAQ*WSCPLA Trigger: AGCGAGTGGACATGACCATCATTGAGCCCTATAAGA...TCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGCCTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCGTGCCTTTCGAGCCATaGAGATCCCGGTCCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSVPFEP*RSRSSC Trigger: ACAGCTGGACCGGGATCTGCATGGCTCGAAAGGCAC...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | ACAGCTAAAGCAGAATTAAAACTCAGAGCCTTACACTTCCAATGCCACACAGCCCACACAAGGCCAGACTaGTGGGGGTGCCTGCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TAKAELKLRALHFQCHTAHTRPD*WGCLPV Trigger: CACAGGCAGGCACCCCCAGCAGTCTGGCCTTGTGTG...GGCTGTGTGGCATTGGAAGTGTAAGGCTCTGAGTTTTAATTCTGCTTTAGCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCGCCCAGTCTTTCTGCTaGCTCACTGGCCCCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: GLNLLRVKTQVLTAVLRIAQSFC*LTGPQA Trigger: GGCCTGGGGGCCAGTGAGGCAGCAGAAAGACTGGGC...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | TTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGCAGGCCTGTGAGCCTCTCTaGGGGTCTTCAGGGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FTESENTGFDSSSQDHRQACEPL*GSSGSP Trigger: TGGAGACCCTGAAGACCCTCAGAGAGGCTCACAGGC...CTGCCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCTCAGTCAGACTCAGCTaGCATTCTGGGGCGGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSSVRLS*HSGAER Trigger: TCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGA...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCGCCTGTGAGCCTCTCTaGGGGTCTTCAGGGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GLNLLRVKTQVLTAVLRIACEPL*GSSGSP Trigger: TGGAGACCCTGAAGACCCTCAGAGAGGCTCACAGGC...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | TTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGCAGACTCAGCTGCCATTCTaGGGCGGAAAGACGCTTCCG | + |
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Preference number: 4 (lower is better) Translates to: FTESENTGFDSSSQDHRQTQLPF*GGKTLP Trigger: CGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGT...CTGCCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | GGAAGGATCCCAGTAGTTTTGATTACAGAGAAGGAAAATGAGACCCACATATTTCTCAGAGGGGGCACTTaGGCCCTGCTGGTGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GRIPVVLITEKENETHIFLRGGT*ALLVPP Trigger: TGGAGGCACCAGCAGGGCCCAAGTGCCCCCTCTGAG...AAATATGTGGGTCTCATTTTCCTTCTCTGTAATCAAAACTACTGGGATCCTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR CCA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACATACCACGTAGCGTaGACGACCACCAGGGCGCGA | + |
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Preference number: 4 (lower is better) Translates to: GLNLLRVKTQVLTAVLRITYHVA*TTTRAR Trigger: TCGCGCCCTGGTGGTCGTCCACGCTACGTGGTATGT...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCGGTTGCTCCTGGTTCTaGGGCTCCTGCCTTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: GLNLLRVKTQVLTAVLRIGCSWF*GSCLLL Trigger: AAGGAGAAGGCAGGAGCCTCAGAACCAGGAGCAACC...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | CTTCCATCCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCTCTTATAGGGCTCAATaGTGGTCATGTCCACTCGCT | + |
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Preference number: 4 (lower is better) Translates to: LPSTSPQRLLRQLNWEGSSYRAQ*WSCPLA Trigger: AGCGAGTGGACATGACCATCATTGAGCCCTATAAGA...GGATCCTTCCCAGTTTAGTTGTCTTAGCAGTCTTTGAGGGGAGGTGGATGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | GGAAGGATCCCAGTAGTTTTGATTACAGAGAAGGAAAATGAGACCCACATATTTCACACAAGGCCAGACTaGTGGGGGTGCCTGCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GRIPVVLITEKENETHIFHTRPD*WGCLPV Trigger: CACAGGCAGGCACCCCCAGCAGTCTGGCCTTGTGTG...AAATATGTGGGTCTCATTTTCCTTCTCTGTAATCAAAACTACTGGGATCCTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | TTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGCAGGAAGGGCCGAACCAGTaGCAGGAAGGCCTTCACATA | + |
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Preference number: 4 (lower is better) Translates to: FTESENTGFDSSSQDHRQEGPNQ*QEGLHI Trigger: TATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCTTC...CTGCCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCAACACTCTCCAGCGATaGCCGTCTTCTCCAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: GLNLLRVKTQVLTAVLRINTLQR*PSSPAT Trigger: TGTGGCTGGAGAAGACGGTCATCGCTGGAGAGTGTT...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR TCA 90 bp | GGAAGGATCCCAGTAGTTTTGATTACAGAGAAGGAAAATGAGACCCACATATTTCTTGCTCTAGCGAGATaGGCTGGGCCAGCTCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: GRIPVVLITEKENETHIFLALAR*AGPALR Trigger: TCGGAGAGCTGGCCCAGCTCATCTCGCTAGAGCAAG...AAATATGTGGGTCTCATTTTCCTTCTCTGTAATCAAAACTACTGGGATCCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | TTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCACAGGCAGTCAGTCAGACTCAGCTaGCATTCTGGGGCGGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: FTESENTGFDSSSQDHRQSVRLS*HSGAER Trigger: TCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGA...CTGCCTGTGATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | AGTTTATTAAAGGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGCCGGCCCAGTCTTTCTaGTGCCTCACTGGCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SLLKVTGLNLLRVKTQVLPAQSF*CLTGPQ Trigger: CTGGGGGCCAGTGAGGCAGCAGAAAGACTGGGCCGG...CAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACCTGTGACCTTTAATAAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | AGTTTATTAAAGGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGGTGCCTTTCGAGCCATaGAGATCCCGGTCCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: SLLKVTGLNLLRVKTQVLVPFEP*RSRSSC Trigger: ACAGCTGGACCGGGATCTGCATGGCTCGAAAGGCAC...CAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACCTGTGACCTTTAATAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR GCA 90 bp | AGTTTATTAAAGGTCACAGGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGCTTGGGCCCTGCTGGTaGCTCCACTCAAGTGAACAA | + |
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Preference number: 4 (lower is better) Translates to: SLLKVTGLNLLRVKTQVLLGPCW*LHSSEQ Trigger: TTGTTCACTTGAGTGGAGGCACCAGCAGGGCCCAAG...CAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACCTGTGACCTTTAATAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS CCA 90 bp | CTCAGCTGCCATTCTGGGGCGGAAAGACGCTTCCGCATAGGGCGCTaGCCACACAAGGCCAGACTGCTGGGGGTGCCTGCCTGTGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: LSCHSGAERRFRIGR*PHKARLLGVPACEP Trigger: AGGCTCACAGGCAGGCACCCCCAGCAGTCTGGCCTTGTGTGGCCAGCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS TCA 90 bp | CCACACAAGGCCAGACTGCTGGGGGTGCCTGCCTGTGAGCCTCTCTaGGGGTCTTCAGGGTCTCCAGGTGAGCCAGGTTCCTCAGGAAGC | + |
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Preference number: 5 (lower is better) Translates to: PHKARLLGVPACEPL*GSSGSPGEPGSSGS Trigger: GCTTCCTGAGGAACCTGGCTCACCTGGAGACCCTGAAGACCCTCAGAGAGGCTCACAGGCAGGCACCCCCAGCAGTCTGGCCTTGTGTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 90 bp | GTGGGAGAGGCTCCGTTTTCTCCTGTTCCCTCAGTCAGACTCAGCTaGCATTCTGGGGCGGAAAGACGCTTCCGCATAGGGCGCTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VGEAPFSPVPSVRLS*HSGAERRFRIGRWP Trigger: TGGCCAGCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGAGGGAACAGGAGAAAACGGAGCCTCTCCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS CCA 90 bp | GGCTCCGTTTTCTCCTGTTCCCTCAGTCAGACTCAGCTGCCATTCTaGGGCGGAAAGACGCTTCCGCATAGGGCGCTGGCCACACAAGGC | + |
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Preference number: 5 (lower is better) Translates to: GSVFSCSLSQTQLPF*GGKTLPHRALATQG Trigger: GCCTTGTGTGGCCAGCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGAGGGAACAGGAGAAAACGGAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS CCA 90 bp | AAGGGCCGAACCAGTGCCAGGAAGGCCTTCACATACCACGTAGCGTaGACGACCACCAGGGCGCGAAGGTTTTTCCGAAGCCTCCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: KGRTSARKAFTYHVA*TTTRARRFFRSLLS Trigger: GGACAGGAGGCTTCGGAAAAACCTTCGCGCCCTGGTGGTCGTCCACGCTACGTGGTATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS GCA 90 bp | GAGCCATGCAGATCCCGGTCCAGCTGTCTGACAACTTCCGGTATGTaGACTTGCTCTAGCGAGATGAGCTGGGCCAGCTCTCCGAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: EPCRSRSSCLTTSGM*TCSSEMSWASSPRL Trigger: CAGCCTCGGAGAGCTGGCCCAGCTCATCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCGGGATCTGCATGGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS CCA 90 bp | CCTCCAGGTCCAAGCTGCCAGCAGAAGAGGAAGACGCAGAGCGGGTaGGAGAGGCTCCGTTTTCTCCTGTTCCCTCAGTCAGACTCAGCT | + |
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Preference number: 5 (lower is better) Translates to: PPGPSCQQKRKTQSG*ERLRFLLFPQSDSA Trigger: AGCTGAGTCTGACTGAGGGAACAGGAGAAAACGGAGCCTCTCCCACCCGCTCTGCGTCTTCCTCTTCTGCTGGCAGCTTGGACCTGGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 90 bp | TGCAGATCCCGGTCCAGCTGTCTGACAACTTCCGGTATGTGCACTTaGTCTAGCGAGATGAGCTGGGCCAGCTCTCCGAGGCTGTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: CRSRSSCLTTSGMCT*SSEMSWASSPRLSR Trigger: TCTGGACAGCCTCGGAGAGCTGGCCCAGCTCATCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCGGGATCTGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS GCA 90 bp | GCGGATCTTTCGTGTGAACTTGGAGCTGATGAAGGGCCGAACCAGTaGCAGGAAGGCCTTCACATACCACGTAGCGTGGACGACCACCAG | + |
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Preference number: 5 (lower is better) Translates to: ADLSCELGADEGPNQ*QEGLHIPRSVDDHQ Trigger: CTGGTGGTCGTCCACGCTACGTGGTATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCTTCATCAGCTCCAAGTTCACACGAAAGATCCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS CCA 90 bp | AAGGGCCGAACCAGTGCCAGGAAGGCCTTCACATACCACGTAGCGTaGACGACCACCAGGGCGCGAAGGTTTTTCCGAAGCCTGAATAAG | + |
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Preference number: 5 (lower is better) Translates to: KGRTSARKAFTYHVA*TTTRARRFFRSLNK Trigger: CTTATTCAGGCTTCGGAAAAACCTTCGCGCCCTGGTGGTCGTCCACGCTACGTGGTATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098871.11 |
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| CDS GCA 90 bp | CGGGGCAAGTCATCTTCCCATTCAAACTCATGTCCGCTGTCCAGCTaGTCAGAGTCTGATGGTGTCTCCAACTCATCCACCTCCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: RGKSSSHSNSCPLSS*SESDGVSNSSTSRS Trigger: GGACCTGGAGGTGGATGAGTTGGAGACACCATCAGACTCTGAGCAGCTGGACAGCGGACATGAGTTTGAATGGGAAGATGACTTGCCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 90 bp | TACGGTAACACTGCCGGATCCAGCTCAGAGGGGGCACTTGGGCCCTaGTGGTGCCTCCACTCAAGTGAACAAGCAGATAGTTTTCAGCTA | + |
|
Preference number: 5 (lower is better) Translates to: YGNTAGSSSEGALGP*WCLHSSEQADSFQL Trigger: TAGCTGAAAACTATCTGCTTGTTCACTTGAGTGGAGGCACCAGCAGGGCCCAAGTGCCCCCTCTGAGCTGGATCCGGCAGTGTTACCGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS CCA 90 bp | TGTCTGACAACTTCCGGTATGTGCACTTGCTCTAGCGAGATGAGCTaGGCCAGCTCTCCGAGGCTGTCCAGAAAGCGGATCTTTCGTGTG | + |
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Preference number: 5 (lower is better) Translates to: CLTTSGMCTCSSEMS*ASSPRLSRKRIFRV Trigger: CACACGAAAGATCCGCTTTCTGGACAGCCTCGGAGAGCTGGCCCAGCTCATCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS-3UTR CAA 90 bp | GGGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCATCTTTCGTGTGAACTaGGAGCTGATGAAGGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: GLAFQDFASWLLGSRQTGIFRVN*ELMKGR Trigger: TCGGCCCTTCATCAGCTCCAAGTTCACACGAAAGAT...GCCTGTCTGCCGGGAGCCCAGGAGCCAGCTTGCAAAATCTTGAAAAGCCAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS TCA 90 bp | ATCTTCCCATTCAAACTCATGTCCGCTGTCCAGCTGCTCAGAGTCTaGTGGTGTCTCCAACTCATCCACCTCCAGGTCCAAGCTGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: IFPFKLMSAVQLLRV*WCLQLIHLQVQAAS Trigger: GCTGGCAGCTTGGACCTGGAGGTGGATGAGTTGGAGACACCATCAGACTCTGAGCAGCTGGACAGCGGACATGAGTTTGAATGGGAAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS-3UTR CAA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCGCTCAGAGGGGGCACTaGGGCCCTGCTGGTGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GLNLLRVKTQVLTAVLRIAQRGH*GPAGAS Trigger: GGAGGCACCAGCAGGGCCCAAGTGCCCCCTCTGAGC...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS-3UTR CAA 90 bp | AGACAGGCTGGCTGTGGCTGCTGGTTAAGCCTTCCATCCACCTCCCCTCAAAGAATCTTTCGTGTGAACTaGGAGCTGATGAAGGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: RQAGCGCWLSLPSTSPQRIFRVN*ELMKGR Trigger: TCGGCCCTTCATCAGCTCCAAGTTCACACGAAAGAT...TCTTTGAGGGGAGGTGGATGGAAGGCTTAACCAGCAGCCACAGCCAGCCTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 |
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| CDS GCA 90 bp | GGTGAGCCAGGTTCCTCAGGAAGCAATCTAGGAAACTCTTCATCTTaGCACTCCTCTCTTAGCTCCAGCTCTCCAAGTTTCATGGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: GEPGSSGSNLGNSSS*HSSLSSSSPSFMVA Trigger: AGCAACCATGAAACTTGGAGAGCTGGAGCTAAGAGAGGAGTGGCAAGATGAAGAGTTTCCTAGATTGCTTCCTGAGGAACCTGGCTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS TCA 90 bp | CACCATGGTAACCTCCATGAGATAAGACTTTCTTATAGGGCTCAATaGTGGTCATGTCCACTCGCTGCTCTCGTTGTCCTGTTCGAAACA | + |
|
Preference number: 5 (lower is better) Translates to: HHGNLHEIRLSYRAQ*WSCPLAALVVLFET Trigger: TGTTTCGAACAGGACAACGAGAGCAGCGAGTGGACATGACCATCATTGAGCCCTATAAGAAAGTCTTATCTCATGGAGGTTACCATGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS-3UTR CAA 90 bp | GGTCTGAATTTACTGAGAGTGAAAACACAGGTTTTGACAGCAGTTCTCAGGATCCTCCAAGTTTCATGGTaGCTCCTGGTTCTGAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: GLNLLRVKTQVLTAVLRILQVSW*LLVLRL Trigger: GAGCCTCAGAACCAGGAGCAACCATGAAACTTGGAG...GATCCTGAGAACTGCTGTCAAAACCTGTGTTTTCACTCTCAGTAAATTCAGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS CCA 72 bp | CATTCTGGGGCGGAAAGACGCTTCCGCATAGGGCGCTaGCCACACAAGGCCAGACTGCTGGGGGTGCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: HSGAERRFRIGR*PHKARLLGVPA Trigger: GGCAGGCACCCCCAGCAGTCTGGCCTTGTGTGGCCAGCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS TCA 72 bp | GCCAGACTGCTGGGGGTGCCTGCCTGTGAGCCTCTCTaGGGGTCTTCAGGGTCTCCAGGTGAGCCAGGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: ARLLGVPACEPL*GSSGSPGEPGS Trigger: GGAACCTGGCTCACCTGGAGACCCTGAAGACCCTCAGAGAGGCTCACAGGCAGGCACCCCCAGCAGTCTGGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS CCA 72 bp | TTCTCCTGTTCCCTCAGTCAGACTCAGCTGCCATTCTaGGGCGGAAAGACGCTTCCGCATAGGGCGCTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: FSCSLSQTQLPF*GGKTLPHRALA Trigger: GGCCAGCGCCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGAGGGAACAGGAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 72 bp | CGGTCCAGCTGTCTGACAACTTCCGGTATGTGCACTTaGTCTAGCGAGATGAGCTGGGCCAGCTCTCCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RSSCLTTSGMCT*SSEMSWASSPR Trigger: CCTCGGAGAGCTGGCCCAGCTCATCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS CCA 72 bp | CCAAGCTGCCAGCAGAAGAGGAAGACGCAGAGCGGGTaGGAGAGGCTCCGTTTTCTCCTGTTCCCTCAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: PSCQQKRKTQSG*ERLRFLLFPQS Trigger: TGACTGAGGGAACAGGAGAAAACGGAGCCTCTCCCACCCGCTCTGCGTCTTCCTCTTCTGCTGGCAGCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS CCA 72 bp | ACCAGTGCCAGGAAGGCCTTCACATACCACGTAGCGTaGACGACCACCAGGGCGCGAAGGTTTTTCCGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: TSARKAFTYHVA*TTTRARRFFRS Trigger: GCTTCGGAAAAACCTTCGCGCCCTGGTGGTCGTCCACGCTACGTGGTATGTGAAGGCCTTCCTGGCACTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS CAA 90 bp | GTCCAAGGTACGGTAACACTGCCGGATCCAGCTCAGAGGGGGCACTaGGGCCCTGCTGGTGCCTCCACTCAAGTGAACAAGCAGATAGTT | + |
|
Preference number: 6 (lower is better) Translates to: VQGTVTLPDPAQRGH*GPAGASTQVNKQIV Trigger: AACTATCTGCTTGTTCACTTGAGTGGAGGCACCAGCAGGGCCCAAGTGCCCCCTCTGAGCTGGATCCGGCAGTGTTACCGTACCTTGGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 72 bp | GCTCCGTTTTCTCCTGTTCCCTCAGTCAGACTCAGCTaGCATTCTGGGGCGGAAAGACGCTTCCGCATAGGG | + |
|
Preference number: 6 (lower is better) Translates to: APFSPVPSVRLS*HSGAERRFRIG Trigger: CCCTATGCGGAAGCGTCTTTCCGCCCCAGAATGGCAGCTGAGTCTGACTGAGGGAACAGGAGAAAACGGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 72 bp | GGATCCAGCTCAGAGGGGGCACTTGGGCCCTGCTGGTaGCTCCACTCAAGTGAACAAGCAGATAGTTTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: GSSSEGALGPCW*LHSSEQADSFQ Trigger: CTGAAAACTATCTGCTTGTTCACTTGAGTGGAGGCACCAGCAGGGCCCAAGTGCCCCCTCTGAGCTGGATCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 72 bp | TCGTGTGAACTTGGAGCTGATGAAGGGCCGAACCAGTaGCAGGAAGGCCTTCACATACCACGTAGCGTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: SCELGADEGPNQ*QEGLHIPRSVD Trigger: GTCCACGCTACGTGGTATGTGAAGGCCTTCCTGGCACTGGTTCGGCCCTTCATCAGCTCCAAGTTCACACGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS GCA 72 bp | AGATCCCGGTCCAGCTGTCTGACAACTTCCGGTATGTaGACTTGCTCTAGCGAGATGAGCTGGGCCAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: RSRSSCLTTSGM*TCSSEMSWASS Trigger: AGAGCTGGCCCAGCTCATCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCGGGATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS TCA 72 bp | TGCCTTTCGAGCCATGCAGATCCCGGTCCAGCTGTCTaGCAACTTCCGGTATGTGCACTTGCTCTAGCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: CLSSHADPGPAV*QLPVCALALAR Trigger: TCTCGCTAGAGCAAGTGCACATACCGGAAGTTGTCAGACAGCTGGACCGGGATCTGCATGGCTCGAAAGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS CCA 72 bp | GCCACTCCTCTCTTAGCTCCAGCTCTCCAAGTTTCATaGTTGCTCCTGGTTCTGAGGCTCCTGCCTTCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: ATPLLAPALQVS*LLLVLRLLPSP Trigger: AGGAGAAGGCAGGAGCCTCAGAACCAGGAGCAACCATGAAACTTGGAGAGCTGGAGCTAAGAGAGGAGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107195.9 |
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| CDS CAA 72 bp | GGGCTCAATGATGGTCATGTCCACTCGCTGCTCTCGTaGTCCTGTTCGAAACACTCTCCAGCGATGACCGTC | + |
|
Preference number: 6 (lower is better) Translates to: GLNDGHVHSLLS*SCSKHSPAMTV Trigger: GACGGTCATCGCTGGAGAGTGTTTCGAACAGGACAACGAGAGCAGCGAGTGGACATGACCATCATTGAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS CAA 90 bp | TTTCTTATAGGGCTCAATGATGGTCATGTCCACTCGCTGCTCTCGTaGTCCTGTTCGAAACACTCTCCAGCGATGACCGTCTTCTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: FLIGLNDGHVHSLLS*SCSKHSPAMTVFSS Trigger: GCTGGAGAAGACGGTCATCGCTGGAGAGTGTTTCGAACAGGACAACGAGAGCAGCGAGTGGACATGACCATCATTGAGCCCTATAAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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| CDS GCA 72 bp | GGTTCCTCAGGAAGCAATCTAGGAAACTCTTCATCTTaGCACTCCTCTCTTAGCTCCAGCTCTCCAAGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: GSSGSNLGNSSS*HSSLSSSSPSF Trigger: GAAACTTGGAGAGCTGGAGCTAAGAGAGGAGTGGCAAGATGAAGAGTTTCCTAGATTGCTTCCTGAGGAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107195.9 ENSMUST00000137250.9 |
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| CDS TCA 72 bp | AACCTCCATGAGATAAGACTTTCTTATAGGGCTCAATaGTGGTCATGTCCACTCGCTGCTCTCGTTGTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: NLHEIRLSYRAQ*WSCPLAALVVL Trigger: CAGGACAACGAGAGCAGCGAGTGGACATGACCATCATTGAGCCCTATAAGAAAGTCTTATCTCATGGAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000098871.11 ENSMUST00000107195.9 ENSMUST00000125515.3 ENSMUST00000137250.9 |
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