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Pregenerated sensors for BNIP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078566

Ensembl transcript IDs: ENSMUST00000106112.2, ENSMUST00000130500.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAACAGGATATATACAGCATGTCAAGGAGGCAGGCTTTAAAACCATaGTATAGAAAAGAGAAGACTGGGAGGACGCCCGATTTAAGCAGC +
Preference number: 1 (lower is better)
Translates to: QQDIYSMSRRQALKP*YRKEKTGRTPDLSS
Trigger: GCTGCTTAAATCGGGCGTCCTCCCAGTCTTCTCTTTTCTATAGCATGGTTTTAAAGCCTGCCTCCTTGACATGCTGTATATATCCTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106112.2
3UTR TCA 72 bp TTTTATTTTAGCACACCTGAGTTAAGTGTGGGACAGTaGAACAAATACAACAGGATATATACAGCATGTCAA +
Preference number: 3 (lower is better)
Translates to: FYFSTPELSVGQ*NKYNRIYTACQ
Trigger: TTGACATGCTGTATATATCCTGTTGTATTTGTTTCACTGTCCCACACTTAACTCAGGTGTGCTAAAATAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106112.2
CDS-3UTR GCA 90 bp TGTAGAAATAACTTGCTGGGGCCTAGACTCACCCAGGTCTACCCTGTCACAGGGCTTCCTCAGACAGAGTaGTGTTTTTCTCGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: CRNNLLGPRLTQVYPVTGLPQTE*CFSRQS
Trigger: GCTTTGGCGAGAAAAACAGCACTCTGTCTGAGGAAG...CCCTGTGACAGGGTAGACCTGGGTGAGTCTAGGCCCCAGCAAGTTATTTCTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130500.8
CDS-3UTR GCA 90 bp CCCAAGGACCATGCTAGCTCTTCAATTAGCTGTCACAGCTCAGACATGAATCCTCTTCCTCAGACAGAGTaGTGTTTTTCTCGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: PKDHASSSISCHSSDMNPLPQTE*CFSRQS
Trigger: GCTTTGGCGAGAAAAACAGCACTCTGTCTGAGGAAG...AGGATTCATGTCTGAGCTGTGACAGCTAATTGAAGAGCTAGCATGGTCCTTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106112.2
CDS-3UTR CAA 90 bp ACTTGCTGGGGCCTAGACTCACCCAGGTCTACCCTGTCACAGGGTGTCCACGCTGGAACGCTGCTCCCATaGCCATTGCTGAAGTGCAGT +
Preference number: 5 (lower is better)
Translates to: TCWGLDSPRSTLSQGVHAGTLLP*PLLKCS
Trigger: ACTGCACTTCAGCAATGGCAATGGGAGCAGCGTTCC...AGCGTGGACACCCTGTGACAGGGTAGACCTGGGTGAGTCTAGGCCCCAGCAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130500.8
CDS-3UTR CAA 90 bp CCCAAGGACCATGCTAGCTCTTCAATTAGCTGTCACAGCTCAGACATGAATCCTGGAACGCTGCTCCCATaGCCATTGCTGAAGTGCAGT +
Preference number: 5 (lower is better)
Translates to: PKDHASSSISCHSSDMNPGTLLP*PLLKCS
Trigger: ACTGCACTTCAGCAATGGCAATGGGAGCAGCGTTCC...AGGATTCATGTCTGAGCTGTGACAGCTAATTGAAGAGCTAGCATGGTCCTTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106112.2