Pregenerated sensors for BNIP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078566

Ensembl transcript IDs: ENSMUST00000106112.2, ENSMUST00000130500.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	CAACAGGATATATACAGCATGTCAAGGAGGCAGGCTTTAAAACCATaGTATAGAAAAGAGAAGACTGGGAGGACGCCCGATTTAAGCAGC	+
Preference number: 1 (lower is better) Translates to: QQDIYSMSRRQALKP*YRKEKTGRTPDLSS Trigger: GCTGCTTAAATCGGGCGTCCTCCCAGTCTTCTCTTTTCTATAGCATGGTTTTAAAGCCTGCCTCCTTGACATGCTGTATATATCCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106112.2
3UTR TCA 72 bp	TTTTATTTTAGCACACCTGAGTTAAGTGTGGGACAGTaGAACAAATACAACAGGATATATACAGCATGTCAA	+
Preference number: 3 (lower is better) Translates to: FYFSTPELSVGQ*NKYNRIYTACQ Trigger: TTGACATGCTGTATATATCCTGTTGTATTTGTTTCACTGTCCCACACTTAACTCAGGTGTGCTAAAATAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106112.2
CDS-3UTR GCA 90 bp	TGTAGAAATAACTTGCTGGGGCCTAGACTCACCCAGGTCTACCCTGTCACAGGGCTTCCTCAGACAGAGTaGTGTTTTTCTCGCCAAAGC	+
Preference number: 4 (lower is better) Translates to: CRNNLLGPRLTQVYPVTGLPQTE*CFSRQS Trigger: GCTTTGGCGAGAAAAACAGCACTCTGTCTGAGGAAG...CCCTGTGACAGGGTAGACCTGGGTGAGTCTAGGCCCCAGCAAGTTATTTCTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130500.8
CDS-3UTR GCA 90 bp	CCCAAGGACCATGCTAGCTCTTCAATTAGCTGTCACAGCTCAGACATGAATCCTCTTCCTCAGACAGAGTaGTGTTTTTCTCGCCAAAGC	+
Preference number: 4 (lower is better) Translates to: PKDHASSSISCHSSDMNPLPQTE*CFSRQS Trigger: GCTTTGGCGAGAAAAACAGCACTCTGTCTGAGGAAG...AGGATTCATGTCTGAGCTGTGACAGCTAATTGAAGAGCTAGCATGGTCCTTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106112.2
CDS-3UTR CAA 90 bp	ACTTGCTGGGGCCTAGACTCACCCAGGTCTACCCTGTCACAGGGTGTCCACGCTGGAACGCTGCTCCCATaGCCATTGCTGAAGTGCAGT	+
Preference number: 5 (lower is better) Translates to: TCWGLDSPRSTLSQGVHAGTLLP*PLLKCS Trigger: ACTGCACTTCAGCAATGGCAATGGGAGCAGCGTTCC...AGCGTGGACACCCTGTGACAGGGTAGACCTGGGTGAGTCTAGGCCCCAGCAAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130500.8
CDS-3UTR CAA 90 bp	CCCAAGGACCATGCTAGCTCTTCAATTAGCTGTCACAGCTCAGACATGAATCCTGGAACGCTGCTCCCATaGCCATTGCTGAAGTGCAGT	+
Preference number: 5 (lower is better) Translates to: PKDHASSSISCHSSDMNPGTLLP*PLLKCS Trigger: ACTGCACTTCAGCAATGGCAATGGGAGCAGCGTTCC...AGGATTCATGTCTGAGCTGTGACAGCTAATTGAAGAGCTAGCATGGTCCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106112.2