Pregenerated sensors for BNIP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078566Ensembl transcript IDs: ENSMUST00000106112.2, ENSMUST00000130500.8
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR GCA 90 bp | CAACAGGATATATACAGCATGTCAAGGAGGCAGGCTTTAAAACCATaGTATAGAAAAGAGAAGACTGGGAGGACGCCCGATTTAAGCAGC | + |
Preference number: 1 (lower is better) Translates to: QQDIYSMSRRQALKP*YRKEKTGRTPDLSS Trigger: GCTGCTTAAATCGGGCGTCCTCCCAGTCTTCTCTTTTCTATAGCATGGTTTTAAAGCCTGCCTCCTTGACATGCTGTATATATCCTGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106112.2 |
||
3UTR TCA 72 bp | TTTTATTTTAGCACACCTGAGTTAAGTGTGGGACAGTaGAACAAATACAACAGGATATATACAGCATGTCAA | + |
Preference number: 3 (lower is better) Translates to: FYFSTPELSVGQ*NKYNRIYTACQ Trigger: TTGACATGCTGTATATATCCTGTTGTATTTGTTTCACTGTCCCACACTTAACTCAGGTGTGCTAAAATAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106112.2 |
||
CDS-3UTR GCA 90 bp | TGTAGAAATAACTTGCTGGGGCCTAGACTCACCCAGGTCTACCCTGTCACAGGGCTTCCTCAGACAGAGTaGTGTTTTTCTCGCCAAAGC | + |
Preference number: 4 (lower is better) Translates to: CRNNLLGPRLTQVYPVTGLPQTE*CFSRQS Trigger: GCTTTGGCGAGAAAAACAGCACTCTGTCTGAGGAAG...CCCTGTGACAGGGTAGACCTGGGTGAGTCTAGGCCCCAGCAAGTTATTTCTACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130500.8 |
||
CDS-3UTR GCA 90 bp | CCCAAGGACCATGCTAGCTCTTCAATTAGCTGTCACAGCTCAGACATGAATCCTCTTCCTCAGACAGAGTaGTGTTTTTCTCGCCAAAGC | + |
Preference number: 4 (lower is better) Translates to: PKDHASSSISCHSSDMNPLPQTE*CFSRQS Trigger: GCTTTGGCGAGAAAAACAGCACTCTGTCTGAGGAAG...AGGATTCATGTCTGAGCTGTGACAGCTAATTGAAGAGCTAGCATGGTCCTTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106112.2 |
||
CDS-3UTR CAA 90 bp | ACTTGCTGGGGCCTAGACTCACCCAGGTCTACCCTGTCACAGGGTGTCCACGCTGGAACGCTGCTCCCATaGCCATTGCTGAAGTGCAGT | + |
Preference number: 5 (lower is better) Translates to: TCWGLDSPRSTLSQGVHAGTLLP*PLLKCS Trigger: ACTGCACTTCAGCAATGGCAATGGGAGCAGCGTTCC...AGCGTGGACACCCTGTGACAGGGTAGACCTGGGTGAGTCTAGGCCCCAGCAAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130500.8 |
||
CDS-3UTR CAA 90 bp | CCCAAGGACCATGCTAGCTCTTCAATTAGCTGTCACAGCTCAGACATGAATCCTGGAACGCTGCTCCCATaGCCATTGCTGAAGTGCAGT | + |
Preference number: 5 (lower is better) Translates to: PKDHASSSISCHSSDMNPGTLLP*PLLKCS Trigger: ACTGCACTTCAGCAATGGCAATGGGAGCAGCGTTCC...AGGATTCATGTCTGAGCTGTGACAGCTAATTGAAGAGCTAGCATGGTCCTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106112.2 |