Pregenerated sensors for BNIP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011958Ensembl transcript IDs: ENSMUST00000034754.12, ENSMUST00000085393.13, ENSMUST00000117450.8, ENSMUST00000137472.2, ENSMUST00000154772.8, ENSMUST00000165389.8
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGCCGACGAGGAAACGAGGAAGTCCTCTGGTAAAGTGCCCCACTaGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGC | + |
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Preference number: 1 (lower is better) Translates to: TADEETRKSSGKVPH*ESTAMAFHLLYRRS Trigger: GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCACTTTACCAGAGGACTTCCTCGTTTCCTCGTCGGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 90 bp | GTGCTCCAACAGCCGACGAGGAAACGAGGAAGTCCTCTGGTAAAGTaGCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACA | + |
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Preference number: 1 (lower is better) Translates to: VLQQPTRKRGSPLVK*PTGRALQWHSICST Trigger: TGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCACTTTACCAGAGGACTTCCTCGTTTCCTCGTCGGCTGTTGGAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 90 bp | CTGGTAAAGTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTaGTCTACAGACGCAGCTGATCATGAATACTCATCGGAGCCTCTG | + |
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Preference number: 1 (lower is better) Translates to: LVKCPTGRALQWHSI*STDAADHEYSSEPL Trigger: CAGAGGCTCCGATGAGTATTCATGATCAGCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCACTTTACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CCA 90 bp | TTTTCAAAGGCCTGGGATTTTAGCCAGGGCTCCCAGTCACTTCTCTaGGTTCAGCACACAGAGCAGGAGAGCTCTGATACGACACACACG | + |
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Preference number: 1 (lower is better) Translates to: FSKAWDFSQGSQSLL*VQHTEQESSDTTHT Trigger: CGTGTGTGTCGTATCAGAGCTCTCCTGCTCTGTGTGCTGAACCCAGAGAAGTGACTGGGAGCCCTGGCTAAAATCCCAGGCCTTTGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR TCA 90 bp | CTCCCAGTCACTTCTCTGGGTTCAGCACACAGAGCAGGAGAGCTCTaGTACGACACACACGTTAAGCATGCTCATATTGAGCACGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: LPVTSLGSAHRAGEL*YDTHVKHAHIEHEE Trigger: CTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTATCAGAGCTCTCCTGCTCTGTGTGCTGAACCCAGAGAAGTGACTGGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR GCA 90 bp | CACATGCATGACCTTAGGTACTTCTTGGCGTCATTTACCTGTCCCTaGTTTAGGACAACCCAGCCTGTTACCCAGGAAATGTATCCAACC | + |
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Preference number: 1 (lower is better) Translates to: HMHDLRYFLASFTCP*FRTTQPVTQEMYPT Trigger: GGTTGGATACATTTCCTGGGTAACAGGCTGGGTTGTCCTAAAGCAGGGACAGGTAAATGACGCCAAGAAGTACCTAAGGTCATGCATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 90 bp | ACCACATTAAGAAACAATGTGCTTTCAGGGAGGAGAAGCTCAGGCTaGTACTACTGTCTCGACCACATGCATGACCTTAGGTACTTCTTG | + |
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Preference number: 1 (lower is better) Translates to: TTLRNNVLSGRRSSG*YYCLDHMHDLRYFL Trigger: CAAGAAGTACCTAAGGTCATGCATGTGGTCGAGACAGTAGTAGCAGCCTGAGCTTCTCCTCCCTGAAAGCACATTGTTTCTTAATGTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 90 bp | GGTTCTAACACATCTTTAGAGAGGAAAGCAAGTTGTTCACTCACCTaGCCTTCCACCACATTAAGAAACAATGTGCTTTCAGGGAGGAGA | + |
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Preference number: 1 (lower is better) Translates to: GSNTSLERKASCSLT*PSTTLRNNVLSGRR Trigger: TCTCCTCCCTGAAAGCACATTGTTTCTTAATGTGGTGGAAGGGCAGGTGAGTGAACAACTTGCTTTCCTCTCTAAAGATGTGTTAGAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 90 bp | AGTCCCTTGTACAAGAGTCCATTTGGAAAGAAGTCAAGTAAAATTTaGAACCGATTACATAAACACATGAGCCATGAGTGCAATAGGATG | + |
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Preference number: 1 (lower is better) Translates to: SPLYKSPFGKKSSKI*NRLHKHMSHECNRM Trigger: CATCCTATTGCACTCATGGCTCATGTGTTTATGTAATCGGTTGCAAATTTTACTTGACTTCTTTCCAAATGGACTCTTGTACAAGGGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CAA 90 bp | GAGCAGGAGAGCTCTGATACGACACACACGTTAAGCATGCTCATATaGAGCACGAGGAGCTTGGGGTTTGCCCTGTCCTCGGCTCTGGGC | + |
|
Preference number: 2 (lower is better) Translates to: EQESSDTTHTLSMLI*STRSLGFALSSALG Trigger: GCCCAGAGCCGAGGACAGGGCAAACCCCAAGCTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTATCAGAGCTCTCCTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR-3UTR GCA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCACTGTCTCGACCACATaGATGACCTTAGGTACTTCT | + |
|
Preference number: 2 (lower is better) Translates to: VPHWESTAMAFHLLYRRSTVSTT*MTLGTS Trigger: AGAAGTACCTAAGGTCATGCATGTGGTCGAGACAGT...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR-3UTR CCA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCACAGCTTCACACACATaGCACAACTCATGTCACATT | + |
|
Preference number: 2 (lower is better) Translates to: VPHWESTAMAFHLLYRRSTASHT*HNSCHI Trigger: AATGTGACATGAGTTGTGCCATGTGTGTGAAGCTGT...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CAA 90 bp | GATACGACACACACGTTAAGCATGCTCATATTGAGCACGAGGAGCTaGGGGTTTGCCCTGTCCTCGGCTCTGGGCGACATTTATATTTAC | + |
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Preference number: 2 (lower is better) Translates to: DTTHTLSMLILSTRS*GFALSSALGDIYIY Trigger: GTAAATATAAATGTCGCCCAGAGCCGAGGACAGGGCAAACCCCAAGCTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR CAA 90 bp | CCTCGGCTCTGGGCGACATTTATATTTACAAATGCTAGTCTCTGTTaGCAAGCTAACCAACTAGCAGCAGGGTTAGTCTGTGCAATGCAA | + |
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Preference number: 2 (lower is better) Translates to: PRLWATFIFTNASLC*QANQLAAGLVCAMQ Trigger: TTGCATTGCACAGACTAACCCTGCTGCTAGTTGGTTAGCTTGCAAACAGAGACTAGCATTTGTAAATATAAATGTCGCCCAGAGCCGAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR-3UTR TCA 90 bp | TGCAATGGCATTCCATCTGCTCTACAGACGCAGCTGATCATGAATACTCATCGGCTCATGTCACATTACTaGACACATCTTAAGAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: CNGIPSALQTQLIMNTHRLMSHY*THLKSF Trigger: AAAGCTCTTAAGATGTGTTCAGTAATGTGACATGAG...CCGATGAGTATTCATGATCAGCTGCGTCTGTAGAGCAGATGGAATGCCATTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR-3UTR GCA 90 bp | TACTCAGTAATCGAGCCTTTCCTAATGACTTCAGTAGTTTTGGGTTTGGGAAGAGGAAGGGAAACCTACTaGATGTTAGTTGTTTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: YSVIEPFLMTSVVLGLGRGRETY*MLVVSK Trigger: CTTGGAAACAACTAACATGCAGTAGGTTTCCCTTCC...TCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCGATTACTGAGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154772.8 |
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| 3UTR GCA 72 bp | CCAGTACAGCACTGTACACCACCCAACAGCAACGTCTaGGTAGGCCAAACCCCACTGTGCTCCAACAGCCGA | + |
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Preference number: 3 (lower is better) Translates to: PVQHCTPPNSNV*VGQTPLCSNSR Trigger: TCGGCTGTTGGAGCACAGTGGGGTTTGGCCTACGCAGACGTTGCTGTTGGGTGGTGTACAGTGCTGTACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 72 bp | CAGCCGACGAGGAAACGAGGAAGTCCTCTGGTAAAGTaGCCCACTGGGAGAGCACTGCAATGGCATTCCATC | + |
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Preference number: 3 (lower is better) Translates to: QPTRKRGSPLVK*PTGRALQWHSI Trigger: GATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCACTTTACCAGAGGACTTCCTCGTTTCCTCGTCGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CCA 72 bp | GCCTGGGATTTTAGCCAGGGCTCCCAGTCACTTCTCTaGGTTCAGCACACAGAGCAGGAGAGCTCTGATACG | + |
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Preference number: 3 (lower is better) Translates to: AWDFSQGSQSLL*VQHTEQESSDT Trigger: CGTATCAGAGCTCTCCTGCTCTGTGTGCTGAACCCAGAGAAGTGACTGGGAGCCCTGGCTAAAATCCCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR-3UTR CAA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCAGAGAGGAAAGCAAGTaGTTCACTCACCTGCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: VPHWESTAMAFHLLYRRSREESK*FTHLPF Trigger: GAAGGGCAGGTGAGTGAACAACTTGCTTTCCTCTCT...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR-3UTR CAA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCGCAGTGAACAGTCCCTaGTACAAGAGTCCATTTGGA | + |
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Preference number: 3 (lower is better) Translates to: VPHWESTAMAFHLLYRRSAVNSP*YKSPFG Trigger: TCCAAATGGACTCTTGTACAAGGGACTGTTCACTGC...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CCA 72 bp | GAGGAAACGAGGAAGTCCTCTGGTAAAGTGCCCCACTaGGAGAGCACTGCAATGGCATTCCATCTGCTCTAC | + |
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Preference number: 3 (lower is better) Translates to: EETRKSSGKVPH*ESTAMAFHLLY Trigger: GTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCACTTTACCAGAGGACTTCCTCGTTTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 72 bp | CAGACGCAGCTGATCATGAATACTCATCGGAGCCTCTaGAACCCCTCACAGCTTCACACACATGGCACAACT | + |
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Preference number: 3 (lower is better) Translates to: QTQLIMNTHRSL*NPSQLHTHGTT Trigger: AGTTGTGCCATGTGTGTGAAGCTGTGAGGGGTTGCAGAGGCTCCGATGAGTATTCATGATCAGCTGCGTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 72 bp | TGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTaGTCTACAGACGCAGCTGATCATGAATACTCATCG | + |
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Preference number: 3 (lower is better) Translates to: CPTGRALQWHSI*STDAADHEYSS Trigger: CGATGAGTATTCATGATCAGCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CCA 72 bp | GCACGAGGAGCTTGGGGTTTGCCCTGTCCTCGGCTCTaGGCGACATTTATATTTACAAATGCTAGTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: ARGAWGLPCPRL*ATFIFTNASLC Trigger: ACAGAGACTAGCATTTGTAAATATAAATGTCGCCCAGAGCCGAGGACAGGGCAAACCCCAAGCTCCTCGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR-3UTR CAA 90 bp | GATCATGAATACTCATCGGAGCCTCTGCAACCCCTCACAGCTTCACACACATGGGCAGTGAACAGTCCCTaGTACAAGAGTCCATTTGGA | + |
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Preference number: 3 (lower is better) Translates to: DHEYSSEPLQPLTASHTWAVNSP*YKSPFG Trigger: TCCAAATGGACTCTTGTACAAGGGACTGTTCACTGC...CCATGTGTGTGAAGCTGTGAGGGGTTGCAGAGGCTCCGATGAGTATTCATGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 72 bp | GACCTTAGGTACTTCTTGGCGTCATTTACCTGTCCCTaGTTTAGGACAACCCAGCCTGTTACCCAGGAAATG | + |
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Preference number: 3 (lower is better) Translates to: DLRYFLASFTCP*FRTTQPVTQEM Trigger: CATTTCCTGGGTAACAGGCTGGGTTGTCCTAAAGCAGGGACAGGTAAATGACGCCAAGAAGTACCTAAGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 72 bp | AAGCATGCTCATATTGAGCACGAGGAGCTTGGGGTTTaGCCTGTCCTCGGCTCTGGGCGACATTTATATTTA | + |
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Preference number: 3 (lower is better) Translates to: KHAHIEHEELGV*PVLGSGRHLYL Trigger: TAAATATAAATGTCGCCCAGAGCCGAGGACAGGGCAAACCCCAAGCTCCTCGTGCTCAATATGAGCATGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR TCA 72 bp | ACTTCTCTGGGTTCAGCACACAGAGCAGGAGAGCTCTaGTACGACACACACGTTAAGCATGCTCATATTGAG | + |
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Preference number: 3 (lower is better) Translates to: TSLGSAHRAGEL*YDTHVKHAHIE Trigger: CTCAATATGAGCATGCTTAACGTGTGTGTCGTATCAGAGCTCTCCTGCTCTGTGTGCTGAACCCAGAGAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| 3UTR CCA 72 bp | TCGGAGCCTCTGCAACCCCTCACAGCTTCACACACATaGCACAACTCATGTCACATTACTGAACACATCTTA | + |
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Preference number: 3 (lower is better) Translates to: SEPLQPLTASHT*HNSCHITEHIL Trigger: TAAGATGTGTTCAGTAATGTGACATGAGTTGTGCCATGTGTGTGAAGCTGTGAGGGGTTGCAGAGGCTCCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR TCA 72 bp | CATGAAATGAAGGCTTACAGACAGCAAATGTTGTCCTaGGTGCACGGCAGCAGCACTTCAATCCTTACAGAA | + |
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Preference number: 3 (lower is better) Translates to: HEMKAYRQQMLS*VHGSSTSILTE Trigger: TTCTGTAAGGATTGAAGTGCTGCTGCCGTGCACTCAGGACAACATTTGCTGTCTGTAAGCCTTCATTTCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR TCA 72 bp | AGTCAAGTAAAATTTGCAACCGATTACATAAACACATaGGCCATGAGTGCAATAGGATGCACTACAGCCCCG | + |
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Preference number: 3 (lower is better) Translates to: SQVKFATDYINT*AMSAIGCTTAP Trigger: CGGGGCTGTAGTGCATCCTATTGCACTCATGGCTCATGTGTTTATGTAATCGGTTGCAAATTTTACTTGACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR GCA 72 bp | ACATCTTTAGAGAGGAAAGCAAGTTGTTCACTCACCTaGCCTTCCACCACATTAAGAAACAATGTGCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: TSLERKASCSLT*PSTTLRNNVLS Trigger: TGAAAGCACATTGTTTCTTAATGTGGTGGAAGGGCAGGTGAGTGAACAACTTGCTTTCCTCTCTAAAGATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR TCA 90 bp | GAGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTGTCCGGGATCCAGGGTCAGGCTaGTGTCTGGGGCCATCAGTT | + |
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Preference number: 4 (lower is better) Translates to: ECNRMHYSPASPVLSLVRDPGSG*CLGPSV Trigger: AACTGATGGCCCCAGACATCAGCCTGACCCTGGATC...CCGGACAAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR TCA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCCCTGCTCTCCAATCCTaGACATGCGCCAGCGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: VPHWESTAMAFHLLYRRSPALQS*TCASGV Trigger: GACGCCGCTGGCGCATGTTCAGGATTGGAGAGCAGG...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR GCA 90 bp | AGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTGTCCGGGTCCACCCTGTGGTCCTaGTCTCCAATCCTGAACATG | + |
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Preference number: 4 (lower is better) Translates to: SAIGCTTAPPPRCSLLSGSTLWS*SPILNM Trigger: CATGTTCAGGATTGGAGAGCAGGACCACAGGGTGGA...CCCGGACAAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR CCA 90 bp | GAGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTGTCCGGGGTCAGGCTGATGTCTaGGGCCATCAGTTTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: ECNRMHYSPASPVLSLVRGQADV*GHQFLP Trigger: AGGAAGAAACTGATGGCCCCAGACATCAGCCTGACC...CCGGACAAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR GCA 90 bp | GAGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTGTCCGGCATGGGAACAAGCTCTaGCAGCTCGGCCAAGTTAAA | + |
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Preference number: 4 (lower is better) Translates to: ECNRMHYSPASPVLSLVRHGNKL*QLGQVK Trigger: TTTAACTTGGCCGAGCTGGCAGAGCTTGTTCCCATG...CCGGACAAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR GCA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCTCCACCCTGTGGTCCTaGTCTCCAATCCTGAACATG | + |
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Preference number: 4 (lower is better) Translates to: VPHWESTAMAFHLLYRRSSTLWS*SPILNM Trigger: CATGTTCAGGATTGGAGAGCAGGACCACAGGGTGGA...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR TCA 90 bp | ACCTGCCCTTCCACCACATTAAGAAACAATGTGCTTTCAGGGAGGAGAAGCTCACCTGCTCTCCAATCCTaGACATGCGCCAGCGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: TCPSTTLRNNVLSGRRSSPALQS*TCASGV Trigger: GACGCCGCTGGCGCATGTTCAGGATTGGAGAGCAGG...TGAGCTTCTCCTCCCTGAAAGCACATTGTTTCTTAATGTGGTGGAAGGGCAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR CCA 90 bp | CCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCTGATGGTCAGGCTGATGTCTaGGGCCATCAGTTTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: PTGRALQWHSICSTDAADGQADV*GHQFLP Trigger: AGGAAGAAACTGATGGCCCCAGACATCAGCCTGACC...ATCAGCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR CCA 90 bp | CCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCTGATTTCATGTCCACCCTGTaGTCCTGCTCTCCAATCCTG | + |
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Preference number: 4 (lower is better) Translates to: PTGRALQWHSICSTDAADFMSTL*SCSPIL Trigger: CAGGATTGGAGAGCAGGACCACAGGGTGGACATGAA...ATCAGCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| 3UTR CAA 72 bp | AGCTCTGATACGACACACACGTTAAGCATGCTCATATaGAGCACGAGGAGCTTGGGGTTTGCCCTGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SSDTTHTLSMLI*STRSLGFALSS Trigger: CGAGGACAGGGCAAACCCCAAGCTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTATCAGAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
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| CDS-3UTR GCA 90 bp | AGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTGTCCGGGATAAACCAAGAGGGGTaGACAATGATTAGAGACTTA | + |
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Preference number: 4 (lower is better) Translates to: SAIGCTTAPPPRCSLLSGINQEG*TMIRDL Trigger: TAAGTCTCTAATCATTGTGCACCCCTCTTGGTTTAT...CCCGGACAAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR CCA 90 bp | GAGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTGTCCGGTTACTGCTCACTTTTTaGTGGTTCTTGTTTTCCATT | + |
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Preference number: 4 (lower is better) Translates to: ECNRMHYSPASPVLSLVRLLLTF*WFLFSI Trigger: AATGGAAAACAAGAACCACCAAAAAGTGAGCAGTAA...CCGGACAAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR TCA 90 bp | ATCGGAGCCTCTGCAACCCCTCACAGCTTCACACACATGGCACAACTCATGTCACTTCTTCATACTGTTTaGTGCACTCTGGTATGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: IGASATPHSFTHMAQLMSLLHTV*CTLVCR Trigger: TCGGCATACCAGAGTGCATCAAACAGTATGAAGAAG...TGACATGAGTTGTGCCATGTGTGTGAAGCTGTGAGGGGTTGCAGAGGCTCCGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034754.12 |
||
| CDS-3UTR GCA 90 bp | CATTTACCTGTCCCTGCTTTAGGACAACCCAGCCTGTTACCCAGGAAATGTATCCATGGGAACAAGCTCTaGCAGCTCGGCCAAGTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: HLPVPALGQPSLLPRKCIHGNKL*QLGQVK Trigger: TTTAACTTGGCCGAGCTGGCAGAGCTTGTTCCCATG...GATACATTTCCTGGGTAACAGGCTGGGTTGTCCTAAAGCAGGGACAGGTAAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
||
| CDS-3UTR CCA 90 bp | AGCCATGAGTGCAATAGGATGCACTACAGCCCCGCCTCCCCGGTGCTCTCTCTTTTACTGCTCACTTTTTaGTGGTTCTTGTTTTCCATT | + |
|
Preference number: 4 (lower is better) Translates to: SHECNRMHYSPASPVLSLLLLTF*WFLFSI Trigger: AATGGAAAACAAGAACCACCAAAAAGTGAGCAGTAA...AAGAGAGAGCACCGGGGAGGCGGGGCTGTAGTGCATCCTATTGCACTCATGGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
||
| CDS-3UTR TCA 90 bp | TCAGTAATCGAGCCTTTCCTAATGACTTCAGTAGTTTTGGGTTTGGGAAGATCAGATCCAGGGTCAGGCTaGTGTCTGGGGCCATCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SVIEPFLMTSVVLGLGRSDPGSG*CLGPSV Trigger: AACTGATGGCCCCAGACATCAGCCTGACCCTGGATC...TGATCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCGATTACTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154772.8 |
||
| CDS-3UTR TCA 90 bp | TCTGATACGACACACACGTTAAGCATGCTCATATTGAGCACGAGGAGCTTGGGGCTTCTTCATACTGTTTaGTGCACTCTGGTATGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: SDTTHTLSMLILSTRSLGLLHTV*CTLVCR Trigger: TCGGCATACCAGAGTGCATCAAACAGTATGAAGAAG...CCCCAAGCTCCTCGTGCTCAATATGAGCATGCTTAACGTGTGTGTCGTATCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
||
| CDS-3UTR GCA 90 bp | CCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCTGATATAAACCAAGAGGGGTaGACAATGATTAGAGACTTA | + |
|
Preference number: 4 (lower is better) Translates to: PTGRALQWHSICSTDAADINQEG*TMIRDL Trigger: TAAGTCTCTAATCATTGTGCACCCCTCTTGGTTTAT...ATCAGCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
||
| CDS-3UTR GCA 90 bp | TTGCCCTGTCCTCGGCTCTGGGCGACATTTATATTTACAAATGCTAGTCTCTGTCATGGGAACAAGCTCTaGCAGCTCGGCCAAGTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: LPCPRLWATFIFTNASLCHGNKL*QLGQVK Trigger: TTTAACTTGGCCGAGCTGGCAGAGCTTGTTCCCATG...ACAGAGACTAGCATTTGTAAATATAAATGTCGCCCAGAGCCGAGGACAGGGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
||
| CDS-3UTR TCA 90 bp | GATCATGAATACTCATCGGAGCCTCTGCAACCCCTCACAGCTTCACACACATGGTTTCCATTAAGCTCTTaGTCAACTTGTTTGATGCAC | + |
|
Preference number: 4 (lower is better) Translates to: DHEYSSEPLQPLTASHTWFPLSS*STCLMH Trigger: GTGCATCAAACAAGTTGATCAAGAGCTTAATGGAAA...CCATGTGTGTGAAGCTGTGAGGGGTTGCAGAGGCTCCGATGAGTATTCATGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085393.13 |
||
| CDS-3UTR CCA 90 bp | CGAGCCTTTCCTAATGACTTCAGTAGTTTTGGGTTTGGGAAGATCATCAAAAGAGGTCAGGCTGATGTCTaGGGCCATCAGTTTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RAFPNDFSSFGFGKIIKRGQADV*GHQFLP Trigger: AGGAAGAAACTGATGGCCCCAGACATCAGCCTGACC...TCTTTTGATGATCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154772.8 |
||
| CDS-3UTR TCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGATCCAGGGTCAGGCTaGTGTCTGGGGCCATCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVDPGSG*CLGPSV Trigger: AACTGATGGCCCCAGACATCAGCCTGACCCTGGATC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR TCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGTAAACATGGTGCTGTaGGGGGAAGCTGTGGGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVVNMVL*GEAVGF Trigger: GAACCCCACAGCTTCCCCTCACAGCACCATGTTTAC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR TCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGGCAGACGTACTGTTTaGTGCACTCTGGTATGCCGA | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVGRRTV*CTLVCR Trigger: TCGGCATACCAGAGTGCATCAAACAGTACGTCTGCC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR GCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGTCCACCCTGTGGTCCTaGTCTCCAATCCTGAACATG | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVSTLWS*SPILNM Trigger: CATGTTCAGGATTGGAGAGCAGGACCACAGGGTGGA...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR CCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGGTCAGGCTGATGTCTaGGGCCATCAGTTTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVGQADV*GHQFLP Trigger: AGGAAGAAACTGATGGCCCCAGACATCAGCCTGACC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| 3UTR CAA 72 bp | CAAGAGTTGCAAACCATGACAGCAGTGAACAGTCCCTaGTACAAGAGTCCATTTGGAAAGAAGTCAAGTAAA | + |
|
Preference number: 4 (lower is better) Translates to: QELQTMTAVNSP*YKSPFGKKSSK Trigger: TTTACTTGACTTCTTTCCAAATGGACTCTTGTACAAGGGACTGTTCACTGCTGTCATGGTTTGCAACTCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
||
| CDS-3UTR TCA 90 bp | CGAGCCTTTCCTAATGACTTCAGTAGTTTTGGGTTTGGGAAGATCATCAAAAGATATCCTTCCAGGAAATaGCTTCCCACTCAAACTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RAFPNDFSSFGFGKIIKRYPSRK*LPTQTH Trigger: ATGAGTTTGAGTGGGAAGTCATTTCCTGGAAGGATA...TCTTTTGATGATCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000154772.8 |
||
| CDS-3UTR GCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGCATGGGAACAAGCTCTaGCAGCTCGGCCAAGTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVHGNKL*QLGQVK Trigger: TTTAACTTGGCCGAGCTGGCAGAGCTTGTTCCCATG...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR GCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGAAAAGCATTCCCCTTaGCCACAACCAGGAAGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVEKHSP*PQPGRE Trigger: TTCCCTTCCTGGTTGTGGGCAAGGGGAATGCTTTTC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR CCA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGACAAACCCTGTGTTCTaGAATACCGTGAGAGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SLAMSSFSNMINSLHVRVTNPVF*NTVRGK Trigger: TTTCCCTCTCACGGTATTCCAGAACACAGGGTTTGT...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS TCA 90 bp | GCTCGATCGCCTTCATGTCCACCCTGTGGTCCTGCTCTCCAATCCTaGACATGCGCCAGCGGCGTCCATCGCCCTTTTCTTCTGTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ARSPSCPPCGPALQS*TCASGVHRPFLLWL Trigger: CAGCCACAGAAGAAAAGGGCGATGGACGCCGCTGGCGCATGTTCAGGATTGGAGAGCAGGACCACAGGGTGGACATGAAGGCGATCGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
||
| CDS TCA 90 bp | TGCCCACAACCAGGAAGGGAAGGAAAGCAGGGCAGACGTACTGTTTaGTGCACTCTGGTATGCCGACATACTCCATGGGAACAAGCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: CPQPGREGKQGRRTV*CTLVCRHTPWEQAL Trigger: CAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAGTACGTCTGCCCTGCTTTCCTTCCCTTCCTGGTTGTGGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR CAA 90 bp | GTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATCTGCTCTACAGACGCAGCTCTTCTTCATACTGTTaGATGCACTCTGGTATGCCG | + |
|
Preference number: 5 (lower is better) Translates to: VPHWESTAMAFHLLYRRSSSSYC*MHSGMP Trigger: CGGCATACCAGAGTGCATCAAACAGTATGAAGAAGA...GCTGCGTCTGTAGAGCAGATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034754.12 |
||
| CDS GCA 90 bp | AAACCCTGTGTTCTGGAATACCGTGAGAGGGAAAAGCATTCCCCTTaGCCACAACCAGGAAGGGAAGGAAAGCAGGGCAGACGTACTGTT | + |
|
Preference number: 5 (lower is better) Translates to: KPCVLEYREREKHSP*PQPGREGKQGRRTV Trigger: AACAGTACGTCTGCCCTGCTTTCCTTCCCTTCCTGGTTGTGGGCAAGGGGAATGCTTTTCCCTCTCACGGTATTCCAGAACACAGGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
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| CDS-3UTR CAA 90 bp | AGGAAGTCCTCTGGTAAAGTGCCCCACTGGGAGAGCACTGCAATGGCATTCCATTCAGTAGTTTTGGGTTaGGGAAGATCATCTTCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: RKSSGKVPHWESTAMAFHSVVLG*GRSSSH Trigger: GTGGGAAGATGATCTTCCCAAACCCAAAACTACTGA...ATGGAATGCCATTGCAGTGCTCTCCCAGTGGGGCACTTTACCAGAGGACTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS GCA 90 bp | TTTGATGCACTCTGGTATGCCGACATACTCCATGGGAACAAGCTCTaGCAGCTCGGCCAAGTTAAAGACGTATCTGATCTTCTGACTGAA | + |
|
Preference number: 5 (lower is better) Translates to: FDALWYADILHGNKL*QLGQVKDVSDLLTE Trigger: TTCAGTCAGAAGATCAGATACGTCTTTAACTTGGCCGAGCTGGCAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS CCA 90 bp | TTCTTGTTTTCCATTAAGCTCTTGATCAACTTGTTTGATGCACTCTaGTATGCCGACATACTCCATGGGAACAAGCTCTGCCAGCTCGGC | + |
|
Preference number: 5 (lower is better) Translates to: FLFSIKLLINLFDAL*YADILHGNKLCQLG Trigger: GCCGAGCTGGCAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAAGTTGATCAAGAGCTTAATGGAAAACAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085393.13 ENSMUST00000165389.8 |
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| CDS TCA 90 bp | ACAAGCTCTGCCAGCTCGGCCAAGTTAAAGACGTATCTGATCTTCTaGCTGAACTTTGAACTGATAAATGGTCGTGTAACAGCCAGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: TSSASSAKLKTYLIF*LNFELINGRVTARS Trigger: ACTTCTGGCTGTTACACGACCATTTATCAGTTCAAAGTTCAGTCAGAAGATCAGATACGTCTTTAACTTGGCCGAGCTGGCAGAGCTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS GCA 90 bp | CAGGCTGTCTGTCTGGATCAGTTCCATCTAGTGTATCTGCTTCAATaGTGTCATCTTCTGGTAAAGGTATTGGAAAATCTTCATCCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: QAVCLDQFHLVYLLQ*CHLLVKVLENLHPA Trigger: GGCAGGATGAAGATTTTCCAATACCTTTACCAGAAGATGACAGCATTGAAGCAGATACACTAGATGGAACTGATCCAGACAGACAGCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000154772.8 ENSMUST00000165389.8 |
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| CDS-3UTR CAA 90 bp | TGCCCTTCCACCACATTAAGAAACAATGTGCTTTCAGGGAGGAGAAGCTCAGGCGCATTTTTCTTCGAGTaGTCGCACCATTTAAGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: CPSTTLRNNVLSGRRSSGAFFFE*SHHLSK Trigger: TTTACTTAAATGGTGCGACAACTCGAAGAAAAATGC...GCCTGAGCTTCTCCTCCCTGAAAGCACATTGTTTCTTAATGTGGTGGAAGGGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
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| CDS-3UTR CAA 90 bp | ACAAATGCTAGTCTCTGTTTGCAAGCTAACCAACTAGCAGCAGGGTTAGTCTGTTCTTCTTCATACTGTTaGATGCACTCTGGTATGCCG | + |
|
Preference number: 5 (lower is better) Translates to: TNASLCLQANQLAAGLVCSSSYC*MHSGMP Trigger: CGGCATACCAGAGTGCATCAAACAGTATGAAGAAGA...ACAGACTAACCCTGCTGCTAGTTGGTTAGCTTGCAAACAGAGACTAGCATTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137472.2 |
||
| CDS-3UTR CAA 90 bp | ACCTGCCCTTCCACCACATTAAGAAACAATGTGCTTTCAGGGAGGAGAAGCTCAGCATTTTTCTTCGAGTaGTCGCACCATTTAAGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: TCPSTTLRNNVLSGRRSSAFFFE*SHHLSK Trigger: TTTACTTAAATGGTGCGACAACTCGAAGAAAAATGC...TGAGCTTCTCCTCCCTGAAAGCACATTGTTTCTTAATGTGGTGGAAGGGCAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 |
||
| CDS-3UTR CAA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGGGCAGACGTACTGTTaGATGCACTCTGGTATGCCG | + |
|
Preference number: 5 (lower is better) Translates to: SLAMSSFSNMINSLHVRVGQTYC*MHSGMP Trigger: CGGCATACCAGAGTGCATCAAACAGTACGTCTGCCC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR CAA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGGAAAAGCATTCCCCTaGCCCACAACCAGGAAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: SLAMSSFSNMINSLHVRVGKAFP*PTTRKG Trigger: TCCCTTCCTGGTTGTGGGCAAGGGGAATGCTTTTCC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS TCA 90 bp | CAGCTCGGCCAAGTTAAAGACGTATCTGATCTTCTGACTGAACTTTaGACTGATAAATGGTCGTGTAACAGCCAGAAGTGTTCGGATAAA | + |
|
Preference number: 5 (lower is better) Translates to: QLGQVKDVSDLLTEL*TDKWSCNSQKCSDK Trigger: TTTATCCGAACACTTCTGGCTGTTACACGACCATTTATCAGTTCAAAGTTCAGTCAGAAGATCAGATACGTCTTTAACTTGGCCGAGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS GCA 90 bp | AATGGTCGTGTAACAGCCAGAAGTGTTCGGATAAACCAAGAGGGGTaGACAATGATTAGAGACTTAAGGTTTTTCCTTAATCGTCTATCA | + |
|
Preference number: 5 (lower is better) Translates to: NGRVTARSVRINQEG*TMIRDLRFFLNRLS Trigger: TGATAGACGATTAAGGAAAAACCTTAAGTCTCTAATCATTGTGCACCCCTCTTGGTTTATCCGAACACTTCTGGCTGTTACACGACCATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
||
| CDS-3UTR CAA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGTCAGTAGTTTTGGGTTaGGGAAGATCATCTTCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: SLAMSSFSNMINSLHVRVSVVLG*GRSSSH Trigger: GTGGGAAGATGATCTTCCCAAACCCAAAACTACTGA...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS-3UTR CAA 90 bp | TCTTTAGCAATGAGTTCTTTCAGTAATATGATAAACTCACTCCATGTGAGAGTGGCATTTTTCTTCGAGTaGTCGCACCATTTAAGTAAA | + |
|
Preference number: 5 (lower is better) Translates to: SLAMSSFSNMINSLHVRVAFFFE*SHHLSK Trigger: TTTACTTAAATGGTGCGACAACTCGAAGAAAAATGC...CACTCTCACATGGAGTGAGTTTATCATATTACTGAAAGAACTCATTGCTAAAGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS TCA 72 bp | CCTTCATGTCCACCCTGTGGTCCTGCTCTCCAATCCTaGACATGCGCCAGCGGCGTCCATCGCCCTTTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: PSCPPCGPALQS*TCASGVHRPFL Trigger: AAGAAAAGGGCGATGGACGCCGCTGGCGCATGTTCAGGATTGGAGAGCAGGACCACAGGGTGGACATGAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
||
| CDS TCA 72 bp | GTGGCCATCACCTCCAGTTCTGTAAACATGGTGCTGTaGGGGGAAGCTGTGGGGTTCCTTACAAACCCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: VAITSSSVNMVL*GEAVGFLTNPV Trigger: CACAGGGTTTGTAAGGAACCCCACAGCTTCCCCTCACAGCACCATGTTTACAGAACTGGAGGTGATGGCCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS GCA 72 bp | GTTCTGGAATACCGTGAGAGGGAAAAGCATTCCCCTTaGCCACAACCAGGAAGGGAAGGAAAGCAGGGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: VLEYREREKHSP*PQPGREGKQGR Trigger: TCTGCCCTGCTTTCCTTCCCTTCCTGGTTGTGGGCAAGGGGAATGCTTTTCCCTCTCACGGTATTCCAGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS TCA 72 bp | CCAGGAAGGGAAGGAAAGCAGGGCAGACGTACTGTTTaGTGCACTCTGGTATGCCGACATACTCCATGGGAA | + |
|
Preference number: 6 (lower is better) Translates to: PGREGKQGRRTV*CTLVCRHTPWE Trigger: TTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAGTACGTCTGCCCTGCTTTCCTTCCCTTCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS CAA 72 bp | ACCAGGAAGGGAAGGAAAGCAGGGCAGACGTACTGTTaGATGCACTCTGGTATGCCGACATACTCCATGGGA | + |
|
Preference number: 6 (lower is better) Translates to: TRKGRKAGQTYC*MHSGMPTYSMG Trigger: TCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAGTACGTCTGCCCTGCTTTCCTTCCCTTCCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS CAA 90 bp | TTGCCCACAACCAGGAAGGGAAGGAAAGCAGGGCAGACGTACTGTTaGATGCACTCTGGTATGCCGACATACTCCATGGGAACAAGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LPTTRKGRKAGQTYC*MHSGMPTYSMGTSS Trigger: AGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAGTACGTCTGCCCTGCTTTCCTTCCCTTCCTGGTTGTGGGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117450.8 |
||
| CDS TCA 72 bp | ACCACAGAGAGTCTTCACCAGGATCCAGGGTCAGGCTaGTGTCTGGGGCCATCAGTTTCTTCCTTACTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: TTESLHQDPGSG*CLGPSVSSLLC Trigger: ACAAAGTAAGGAAGAAACTGATGGCCCCAGACATCAGCCTGACCCTGGATCCTGGTGAAGACTCTCTGTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000154772.8 ENSMUST00000165389.8 |
||
| CDS CAA 90 bp | TCCAGGGTCAGGCTGATGTCTGGGGCCATCAGTTTCTTCCTTACTTaGTTCCCATTAACTTCTAAGGAGCCAGGCTGTCTGTCTGGATCA | + |
|
Preference number: 6 (lower is better) Translates to: SRVRLMSGAISFFLT*FPLTSKEPGCLSGS Trigger: TGATCCAGACAGACAGCCTGGCTCCTTAGAAGTTAATGGGAACAAAGTAAGGAAGAAACTGATGGCCCCAGACATCAGCCTGACCCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000154772.8 ENSMUST00000165389.8 |
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| CDS GCA 72 bp | CTCTGGTATGCCGACATACTCCATGGGAACAAGCTCTaGCAGCTCGGCCAAGTTAAAGACGTATCTGATCTT | + |
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Preference number: 6 (lower is better) Translates to: LWYADILHGNKL*QLGQVKDVSDL Trigger: AAGATCAGATACGTCTTTAACTTGGCCGAGCTGGCAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS CAA 72 bp | AGGCTGATGTCTGGGGCCATCAGTTTCTTCCTTACTTaGTTCCCATTAACTTCTAAGGAGCCAGGCTGTCTG | + |
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Preference number: 6 (lower is better) Translates to: RLMSGAISFFLT*FPLTSKEPGCL Trigger: CAGACAGCCTGGCTCCTTAGAAGTTAATGGGAACAAAGTAAGGAAGAAACTGATGGCCCCAGACATCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000154772.8 ENSMUST00000165389.8 |
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| CDS CCA 72 bp | TCCATTAAGCTCTTGATCAACTTGTTTGATGCACTCTaGTATGCCGACATACTCCATGGGAACAAGCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SIKLLINLFDAL*YADILHGNKLC Trigger: GCAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAAGTTGATCAAGAGCTTAATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085393.13 ENSMUST00000165389.8 |
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| CDS TCA 72 bp | TCCTTAATCGTCTATCAATTTGCTGGTAGCATCTCCTaGGCCATCCCAAACTGGGCATTTTTCTTCGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SLIVYQFAGSIS*AIPNWAFFFEL Trigger: CAACTCGAAGAAAAATGCCCAGTTTGGGATGGCTCAGGAGATGCTACCAGCAAATTGATAGACGATTAAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
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| CDS CAA 90 bp | GCTGTGTACTCAGTAATCGAGCCTTTCCTAATGACTTCAGTAGTTTaGGGTTTGGGAAGATCATCTTCCCACTCAAACTCATCACTGTTC | + |
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Preference number: 6 (lower is better) Translates to: AVYSVIEPFLMTSVV*GLGRSSSHSNSSLF Trigger: GAACAGTGATGAGTTTGAGTGGGAAGATGATCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCGATTACTGAGTACACAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
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| CDS TCA 72 bp | GCCAGCTCGGCCAAGTTAAAGACGTATCTGATCTTCTaGCTGAACTTTGAACTGATAAATGGTCGTGTAACA | + |
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Preference number: 6 (lower is better) Translates to: ASSAKLKTYLIF*LNFELINGRVT Trigger: TGTTACACGACCATTTATCAGTTCAAAGTTCAGTCAGAAGATCAGATACGTCTTTAACTTGGCCGAGCTGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS CAA 72 bp | ATCGAGCCTTTCCTAATGACTTCAGTAGTTTTGGGTTaGGGAAGATCATCTTCCCACTCAAACTCATCACTG | + |
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Preference number: 6 (lower is better) Translates to: IEPFLMTSVVLG*GRSSSHSNSSL Trigger: CAGTGATGAGTTTGAGTGGGAAGATGATCTTCCCAAACCCAAAACTACTGAAGTCATTAGGAAAGGCTCGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
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| CDS CCA 72 bp | TTTAAACTTTTCTTCTTCATACTGTTTGATGCACTCTaGTATGCCGACATACTCCATGGGAACAAGCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: FKLFFFILFDAL*YADILHGNKLC Trigger: GCAGAGCTTGTTCCCATGGAGTATGTCGGCATACCAGAGTGCATCAAACAGTATGAAGAAGAAAAGTTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034754.12 ENSMUST00000137472.2 |
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| CDS GCA 72 bp | GTAACAGCCAGAAGTGTTCGGATAAACCAAGAGGGGTaGACAATGATTAGAGACTTAAGGTTTTTCCTTAAT | + |
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Preference number: 6 (lower is better) Translates to: VTARSVRINQEG*TMIRDLRFFLN Trigger: ATTAAGGAAAAACCTTAAGTCTCTAATCATTGTGCACCCCTCTTGGTTTATCCGAACACTTCTGGCTGTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS TCA 72 bp | GCATTTTTCTTCGAGTTGTCGCACCATTTAAGTAAATaGTCATGTAGTTCTCTGCTACCAACAGCTCTAAAG | + |
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Preference number: 6 (lower is better) Translates to: AFFFELSHHLSK*SCSSLLPTALK Trigger: CTTTAGAGCTGTTGGTAGCAGAGAACTACATGATCATTTACTTAAATGGTGCGACAACTCGAAGAAAAATGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000165389.8 |
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| CDS TCA 72 bp | CAAGTTAAAGACGTATCTGATCTTCTGACTGAACTTTaGACTGATAAATGGTCGTGTAACAGCCAGAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: QVKDVSDLLTEL*TDKWSCNSQKC Trigger: ACACTTCTGGCTGTTACACGACCATTTATCAGTTCAAAGTTCAGTCAGAAGATCAGATACGTCTTTAACTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000137472.2 ENSMUST00000165389.8 |
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| CDS GCA 72 bp | TGTCTGGATCAGTTCCATCTAGTGTATCTGCTTCAATaGTGTCATCTTCTGGTAAAGGTATTGGAAAATCTT | + |
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Preference number: 6 (lower is better) Translates to: CLDQFHLVYLLQ*CHLLVKVLENL Trigger: AAGATTTTCCAATACCTTTACCAGAAGATGACAGCATTGAAGCAGATACACTAGATGGAACTGATCCAGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000034754.12 ENSMUST00000085393.13 ENSMUST00000117450.8 ENSMUST00000154772.8 ENSMUST00000165389.8 |
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