Pregenerated sensors for BMYC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049086Ensembl transcript IDs: ENSMUST00000061483.9
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GATAAGACGTTTTTATTGATGTTATTTACACTTAAGGGTCCAGCTGATGTTGGATTGAGGCAGTTAACATaGCTGAAGCTTACAGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: DKTFLLMLFTLKGPADVGLRQLT*LKLTVQ Trigger: TTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAA...TCCAACATCAGCTGGACCCTTAAGTGTAAATAACATCAATAAAAACGTCTTATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR CCA 90 bp | TACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCCGGCTGCGGCGGCTGCTaGTGGTGCACGTCCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: YAQDLRQLTWLKLTVQSPGCGGC*WCTSSS Trigger: GGAGGAGGACGTGCACCACCAGCAGCCGCCGCAGCC...GGGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR CCA 90 bp | TTACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCTCCAGATGTCCTCGCTaGGCGCTGGCGGCTGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: LRPGFEAVNMAEAYSPKPSRCPR*ALAAAA Trigger: CGCCGCAGCCGCCAGCGCCCAGCGAGGACATCTGGA...GGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR CCA 90 bp | TTACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCTGCGGCGGCTGCTGGTaGTGCACGTCCTCCTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: LRPGFEAVNMAEAYSPKPCGGCW*CTSSSS Trigger: TGAGGAGGAGGACGTGCACCACCAGCAGCCGCCGCA...GGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR CCA 90 bp | TACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCCGCTTGGAGACCAGCTTaGCGGAGGCCGAGAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: YAQDLRQLTWLKLTVQSPAWRPA*RRPRSH Trigger: ATGGCTTCTCGGCCTCCGCCAAGCTGGTCTCCAAGC...GGGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR GCA 90 bp | TTACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCCAGCTCGGGCAGGTCTaGGATGGAGAAGCTATCACC | + |
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Preference number: 4 (lower is better) Translates to: LRPGFEAVNMAEAYSPKPQLGQV*DGEAIT Trigger: GGTGATAGCTTCTCCATCGCAGACCTGCCCGAGCTG...GGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR TCA 90 bp | TACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCCTACAGTCCTGCAGGATaGTGTTCTTCACGAAGGTCT | + |
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Preference number: 4 (lower is better) Translates to: YAQDLRQLTWLKLTVQSPYSPAG*CSSRRS Trigger: AGACCTTCGTGAAGAACATCATCCTGCAGGACTGTA...GGGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| 3UTR CAA 72 bp | AAAAGAGGGAGGGGAGGGTTCTCTTACGCCCAGGATTaGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: KRGRGGFSYAQD*RQLTWLKLTVQ Trigger: TTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTAAGAGAACCCTCCCCTCCCTCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR GCA 90 bp | TACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCCTTCCACATACAGTCCTaGAGGATGATGTTCTTCACG | + |
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Preference number: 4 (lower is better) Translates to: YAQDLRQLTWLKLTVQSPFHIQS*RMMFFT Trigger: CGTGAAGAACATCATCCTGCAGGACTGTATGTGGAA...GGGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS CCA 90 bp | TTCCAGATGTCCTCGCTGGGCGCTGGCGGCTGCGGCGGCTGCTGGTaGTGCACGTCCTCCTCCTCATCGTCGCACATGAAGTATGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: FQMSSLGAGGCGGCW*CTSSSSSSHMKYGC Trigger: GCAGCCATACTTCATGTGCGACGATGAGGAGGAGGACGTGCACCACCAGCAGCCGCCGCAGCCGCCAGCGCCCAGCGAGGACATCTGGAA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS CCA 90 bp | GTCATCCGGGTCGCAGACGAAGCTCTGCTTCACCGCGTCTCCTCCTaGCAGCTCGGGCAGGTCTGCGATGGAGAAGCTATCACCGTCGTG | + |
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Preference number: 5 (lower is better) Translates to: VIRVADEALLHRVSS*QLGQVCDGEAITVV Trigger: CACGACGGTGATAGCTTCTCCATCGCAGACCTGCCCGAGCTGCCAGGAGGAGACGCGGTGAAGCAGAGCTTCGTCTGCGACCCGGATGAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS GCA 90 bp | ATGTTCTTCACGAAGGTCTCGTCATCCGGGTCGCAGACGAAGCTCTaGTTCACCGCGTCTCCTCCTGGCAGCTCGGGCAGGTCTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: MFFTKVSSSGSQTKL*FTASPPGSSGRSAM Trigger: CATCGCAGACCTGCCCGAGCTGCCAGGAGGAGACGCGGTGAAGCAGAGCTTCGTCTGCGACCCGGATGACGAGACCTTCGTGAAGAACAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS CCA 90 bp | TCACGCCGGTGCCTTCTTTGCGCACAGCCTGGTAGGGGTCCAGCTTaGAGACCAGCTTGGCGGAGGCCGAGAAGCCATTCCACATACAGT | + |
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Preference number: 5 (lower is better) Translates to: SRRCLLCAQPGRGPA*RPAWRRPRSHSTYS Trigger: ACTGTATGTGGAATGGCTTCTCGGCCTCCGCCAAGCTGGTCTCCAAGCTGGACCCCTACCAGGCTGTGCGCAAAGAAGGCACCGGCGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS TCA 90 bp | GCTTGGCGGAGGCCGAGAAGCCATTCCACATACAGTCCTGCAGGATaGTGTTCTTCACGAAGGTCTCGTCATCCGGGTCGCAGACGAAGC | + |
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Preference number: 5 (lower is better) Translates to: AWRRPRSHSTYSPAG*CSSRRSRHPGRRRS Trigger: GCTTCGTCTGCGACCCGGATGACGAGACCTTCGTGAAGAACATCATCCTGCAGGACTGTATGTGGAATGGCTTCTCGGCCTCCGCCAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS GCA 90 bp | GAGACCAGCTTGGCGGAGGCCGAGAAGCCATTCCACATACAGTCCTaGAGGATGATGTTCTTCACGAAGGTCTCGTCATCCGGGTCGCAG | + |
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Preference number: 5 (lower is better) Translates to: ETSLAEAEKPFHIQS*RMMFFTKVSSSGSQ Trigger: CTGCGACCCGGATGACGAGACCTTCGTGAAGAACATCATCCTGCAGGACTGTATGTGGAATGGCTTCTCGGCCTCCGCCAAGCTGGTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS-3UTR CAA 90 bp | TTACGCCCAGGATTTGAGGCAGTTAACATGGCTGAAGCTTACAGTCCAAAGCCCAGCTTGGAGACCAGCTaGGCGGAGGCCGAGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LRPGFEAVNMAEAYSPKPSLETS*AEAEKP Trigger: TGGCTTCTCGGCCTCCGCCAAGCTGGTCTCCAAGCT...GGGCTTTGGACTGTAAGCTTCAGCCATGTTAACTGCCTCAAATCCTGGGCGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS GCA 72 bp | CAGATGTCCTCGCTGGGCGCTGGCGGCTGCGGCGGCTaGTGGTGGTGCACGTCCTCCTCCTCATCGTCGCAC | + |
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Preference number: 6 (lower is better) Translates to: QMSSLGAGGCGG*WWCTSSSSSSH Trigger: GTGCGACGATGAGGAGGAGGACGTGCACCACCAGCAGCCGCCGCAGCCGCCAGCGCCCAGCGAGGACATCTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS GCA 72 bp | ACGAAGGTCTCGTCATCCGGGTCGCAGACGAAGCTCTaGTTCACCGCGTCTCCTCCTGGCAGCTCGGGCAGG | + |
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Preference number: 6 (lower is better) Translates to: TKVSSSGSQTKL*FTASPPGSSGR Trigger: CCTGCCCGAGCTGCCAGGAGGAGACGCGGTGAAGCAGAGCTTCGTCTGCGACCCGGATGACGAGACCTTCGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS CCA 72 bp | TGCCTTCTTTGCGCACAGCCTGGTAGGGGTCCAGCTTaGAGACCAGCTTGGCGGAGGCCGAGAAGCCATTCC | + |
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Preference number: 6 (lower is better) Translates to: CLLCAQPGRGPA*RPAWRRPRSHS Trigger: GGAATGGCTTCTCGGCCTCCGCCAAGCTGGTCTCCAAGCTGGACCCCTACCAGGCTGTGCGCAAAGAAGGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS CCA 72 bp | GCACAGCCTGGTAGGGGTCCAGCTTGGAGACCAGCTTaGCGGAGGCCGAGAAGCCATTCCACATACAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: AQPGRGPAWRPA*RRPRSHSTYSP Trigger: AGGACTGTATGTGGAATGGCTTCTCGGCCTCCGCCAAGCTGGTCTCCAAGCTGGACCCCTACCAGGCTGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS TCA 72 bp | GCTGGTGGTGCACGTCCTCCTCCTCATCGTCGCACATaGAGTATGGCTGCACCGAGTCATAGTCCAGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: AGGARPPPHRRT*SMAAPSHSPGR Trigger: GCGACCTGGACTATGACTCGGTGCAGCCATACTTCATGTGCGACGATGAGGAGGAGGACGTGCACCACCAGC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS CCA 72 bp | GTGCACGTCCTCCTCCTCATCGTCGCACATGAAGTATaGCTGCACCGAGTCATAGTCCAGGTCGCGGTTGCC | + |
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Preference number: 6 (lower is better) Translates to: VHVLLLIVAHEV*LHRVIVQVAVA Trigger: GGCAACCGCGACCTGGACTATGACTCGGTGCAGCCATACTTCATGTGCGACGATGAGGAGGAGGACGTGCAC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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| CDS TCA 72 bp | AGGCCGAGAAGCCATTCCACATACAGTCCTGCAGGATaGTGTTCTTCACGAAGGTCTCGTCATCCGGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: RPRSHSTYSPAG*CSSRRSRHPGR Trigger: GCGACCCGGATGACGAGACCTTCGTGAAGAACATCATCCTGCAGGACTGTATGTGGAATGGCTTCTCGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061483.9 |
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