RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BMX (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031377

Ensembl transcript IDs: ENSMUST00000112263.2, ENSMUST00000112265.9

Found 177 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGCCTGTATACATGTCAGTGTACCACACGTGTCCATGGTGTCCATaGAGGCCAAAAGACGTCATCAGATACCTTAGAACTGGATTCATA +
Preference number: 1 (lower is better)
Translates to: LPVYMSVYHTCPWCP*RPKDVIRYLRTGFI
Trigger: TATGAATCCAGTTCTAAGGTATCTGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACATGTATACAGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR TCA 90 bp AAACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTaGGACATTTCTCATACAGAAGCAAACATATACATTTCCGTTCTT +
Preference number: 1 (lower is better)
Translates to: KPPPNSATENKYSNA*DISHTEANIYISVL
Trigger: AAGAACGGAAATGTATATGTTTGCTTCTGTATGAGAAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR-3UTR GCA 90 bp AACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTTCACCTTTTCAATTCTaGTCTACCTTTATACACAGT +
Preference number: 2 (lower is better)
Translates to: NLPQTVPQRTNIQMPETFSPFQF*STFIHS
Trigger: ACTGTGTATAAAGGTAGAGCAGAATTGAAAAGGTGA...AAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR-3UTR CAA 90 bp TGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCACTGAGAGCTCACATCTaGAATTGTAAGCAAGAAGCA +
Preference number: 3 (lower is better)
Translates to: CQCTTRVHGVHEGQKTSSLRAHI*NCKQEA
Trigger: TGCTTCTTGCTTACAATTCAAGATGTGAGCTCTCAG...TGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR TCA 72 bp TACATGTCAGTGTACCACACGTGTCCATGGTGTCCATaGAGGCCAAAAGACGTCATCAGATACCTTAGAACT +
Preference number: 3 (lower is better)
Translates to: YMSVYHTCPWCP*RPKDVIRYLRT
Trigger: AGTTCTAAGGTATCTGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACATGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR-3UTR CAA 90 bp AACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTACGAGCTACATTGCATaGAGTCTTTCTACTTCCCTT +
Preference number: 3 (lower is better)
Translates to: NLPQTVPQRTNIQMPETFTSYIA*SLSTSL
Trigger: AAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGT...AAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR GCA 72 bp TCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATaGCTGAGACATTTCTCATACAGAAGCAAACATATA +
Preference number: 3 (lower is better)
Translates to: SPKQCHREQIFK*LRHFSYRSKHI
Trigger: TATATGTTTGCTTCTGTATGAGAAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
3UTR TCA 72 bp CCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTaGGACATTTCTCATACAGAAGCAAACATATACATT +
Preference number: 3 (lower is better)
Translates to: PNSATENKYSNA*DISHTEANIYI
Trigger: AATGTATATGTTTGCTTCTGTATGAGAAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACAGCCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTGGTAGATGGTGTCTaGTGCCAGTTGGGGCCGGTA +
Preference number: 4 (lower is better)
Translates to: TAGVLKHQATFSASESSHLVDGV*CQLGPV
Trigger: TACCGGCCCCAACTGGCATCAGACACCATCTACCAG...ATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGCCTTAGGCTCTCACAGCCCGCTCCATTGACATCATTCCTCCATCAAGCCCATTCTCGATGTATGAACTaGTGGCTCTCCAAGAAGGCC +
Preference number: 4 (lower is better)
Translates to: SLRLSQPAPLTSFLHQAHSRCMN*WLSKKA
Trigger: GGCCTTCTTGGAGAGCCATCAGTTCATACATCGAGA...ATGGGCTTGATGGAGGAATGATGTCAATGGAGCGGGCTGTGAGAGCCTAAGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CAGCCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCGCCAGCAGCTGTACATaGTCTGGTAGATGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: QPVFLSTKPPFQLLRAHIASSCT*SGRWCL
Trigger: CAGACACCATCTACCAGATCATGTACAGCTGCTGGC...GATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp AGCCTTAGGCTCTCACAGCCCGCTCCATTGACATCATTCCTCCATCAAGCCCATGCTGCTTTGCAGCTCTaGTGGCAACACAGGAACTTT +
Preference number: 4 (lower is better)
Translates to: SLRLSQPAPLTSFLHQAHAALQL*WQHRNF
Trigger: AAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGC...ATGGGCTTGATGGAGGAATGATGTCAATGGAGCGGGCTGTGAGAGCCTAAGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp CCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGTTGGTTGACACTGGGTaGCGGAGCCGTGTGATCATG +
Preference number: 4 (lower is better)
Translates to: PVFLSTKPPFQLLRAHILLVDTG*RSRVIM
Trigger: CATGATCACACGGCTCCGCCACCCAGTGTCAACCAA...CAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp TGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAACACCGGGACCTTGTTaGCCTTGGTTGACACTGGGT +
Preference number: 4 (lower is better)
Translates to: CQCTTRVHGVHEGQKTSSTPGPC*PWLTLG
Trigger: ACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGT...TGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp GGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGAAGGACCTTGTTGGCCTTaGTTGACACTGGGTGGCGGA +
Preference number: 4 (lower is better)
Translates to: GVLKHQATFSASESSHLEGPCWP*LTLGGG
Trigger: TCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCC...TTCAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp GCCCGCTCCATTGACATCATTCCTCCATCAAGCCCATACCTCCTAAACCTCCCCAAAGAATTCATCTTCTaGCATGGCACCCTCCTTGAT +
Preference number: 4 (lower is better)
Translates to: ARSIDIIPPSSPYLLNLPKEFIF*HGTLLD
Trigger: ATCAAGGAGGGTGCCATGTCAGAAGATGAATTCTTT...GGGGAGGTTTAGGAGGTATGGGCTTGATGGAGGAATGATGTCAATGGAGCGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CGCTCCATTGACATCATTCCTCCATCAAGCCCATACCTCCTAAACCTCCCCCAAATGGTCTGGGCCTCCTaGAAGAATTCATCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: RSIDIIPPSSPYLLNLPQMVWAS*KNSSSD
Trigger: GTCAGAAGATGAATTCTTTCAGGAGGCCCAGACCAT...TTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGAGGAATGATGTCAATGGAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp GCCCGCTCCATTGACATCATTCCTCCATCAAGCCCATACCTCCTAAACCTCCCCAAACTTGGTTCCTACTaGGCTGACATACTGATCATC +
Preference number: 4 (lower is better)
Translates to: ARSIDIIPPSSPYLLNLPKLGSY*ADILII
Trigger: GATGATCAGTATGTCAGCTCAGTAGGAACCAAGTTT...GGGGAGGTTTAGGAGGTATGGGCTTGATGGAGGAATGATGTCAATGGAGCGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp TCCATCAAGCCCATACCTCCTAAACCTCCCCCAAACAGTGCCACAGAGAACAAAATGATGCATCCATTTTaGGAACGGGAACTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: SIKPIPPKPPPNSATENKMMHPF*ERELPL
Trigger: CAAGGGCAGTTCCCGTTCTCAAAATGGATGCATCAT...TTTGTTCTCTGTGGCACTGTTTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CTTGCAAACAGGCAGATAGAGCAGGATGCTGAGAGCTCTCATCCTTTATTTTTCCCAGCTTGGGATGGCTaGGTTTCATCATGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: LANRQIEQDAESSHPLFFPAWDG*VSSWSG
Trigger: CCCAGACCATGATGAAACTCAGCCATCCCAAGCTGG...GAAAAATAAAGGATGAGAGCTCTCAGCATCCTGCTCTATCTGCCTGTTTGCAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp GTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAGGTGTACATTCCCATCTaGCTGGAATTCCGAACCATA +
Preference number: 4 (lower is better)
Translates to: VSVPHVSMVSMKAKRRHQVYIPI*LEFRTI
Trigger: TATGGTTCGGAATTCCAGCCAGATGGGAATGTACAC...CTGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp ACAGCCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATTTCACCAGCTTGGGATaGCTGAGTTTCATCATGGTC +
Preference number: 4 (lower is better)
Translates to: TAGVLKHQATFSASESSHFTSLG*LSFIMV
Trigger: GACCATGATGAAACTCAGCCATCCCAAGCTGGTGAA...ATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp AAAGTTAGAGTTCAAAATGGCAGGGCAAAGGCAACTTGCAAACAGGCAGATAGAATGCTTCCCAGAGAGTaGATCCTGGGGCTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: KVRVQNGRAKATCKQADRMLPRE*ILGLLC
Trigger: GCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCAT...TCTATCTGCCTGTTTGCAAGTTGCCTTTGCCCTGCCATTTTGAACTCTAACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CGCTCCATTGACATCATTCCTCCATCAAGCCCATACCTCCTAAACCTCCCCCAAATGACATCTTTGAGGTaGTGTGAGAGGCGATATTTC +
Preference number: 4 (lower is better)
Translates to: RSIDIIPPSSPYLLNLPQMTSLR*CERRYF
Trigger: GAAATATCGCCTCTCACAGCACCTCAAAGATGTCAT...TTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGAGGAATGATGTCAATGGAGCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp AACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTCTCCAAACTGGCCATTaGCCAGCTCCTTCAGCAAGG +
Preference number: 4 (lower is better)
Translates to: NLPQTVPQRTNIQMPETFLQTGH*PAPSAR
Trigger: CCTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAG...AAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp TCCATCAAGCCCATACCTCCTAAACCTCCCCCAAACAGTGCCACAGAGAACAAATTTTCTGGAAGCTCATaGCAGCAGCTGTACATGATC +
Preference number: 4 (lower is better)
Translates to: SIKPIPPKPPPNSATENKFSGSS*QQLYMI
Trigger: GATCATGTACAGCTGCTGGCATGAGCTTCCAGAAAA...TTTGTTCTCTGTGGCACTGTTTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATCTTGTTGGCCTTGGTTaGCACTGGGTGGCGGAGCCG +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNLVGLG*HWVAEP
Trigger: CGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAG...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AAAGTTAGAGTTCAAAATGGCAGGGCAAAGGCAACTTGCAAACAGGCAGATAGAGCAGACAGGAGTTGCTaGAATGTGGGGCGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: KVRVQNGRAKATCKQADRADRSC*NVGRFS
Trigger: AGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGC...TCTATCTGCCTGTTTGCAAGTTGCCTTTGCCCTGCCATTTTGAACTCTAACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CATGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAGTTGGTTACTGCATaGAATGTCTTCCTCGCTTTT +
Preference number: 4 (lower is better)
Translates to: HVSVPHVSMVSMKAKRRHQLVTA*NVFLAF
Trigger: AAAAGCGAGGAAGACATTGCATGCAGTAACCAACTG...ATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp GGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGAAGCTCAGATTGTGACCTaGAGATATTCCCAGCAAACC +
Preference number: 4 (lower is better)
Translates to: GVLKHQATFSASESSHLEAQIVT*RYSQQT
Trigger: GGTTTGCTGGGAATATCTCCAGGTCACAATCTGAGC...TTCAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGGACCTTGTTGGCCTTaGTTGACACTGGGTGGCGGA +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESGPCWP*LTLGGG
Trigger: TCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTTTCCACTGGCCCAGCTaGACCACTCCAAACTGGCCA +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESFHWPS*TTPNWP
Trigger: TGGCCAGTTTGGAGTGGTCCAGCTGGGCCAGTGGAA...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGGTTGGTGATAGTGAATaGGCTTTGGAATGGAATCAA +
Preference number: 4 (lower is better)
Translates to: PVFLSTKPPFQLLRAHILVGDSE*ALEWNQ
Trigger: TTGATTCCATTCCAAAGCTCATTCACTATCACCAAC...CAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTCCAGCTTGGGATGGCTaGGTTTCATCATGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESPAWDG*VSSWSG
Trigger: CCCAGACCATGATGAAACTCAGCCATCCCAAGCTGG...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAAGTGCATCCTGGGGCTaGTTTGCAGCTCTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKSASWG*FAALLA
Trigger: TGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTTTGGTTGACACTGGGTaGCGGAGCCGTGTGATCATG +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESLVDTG*RSRVIM
Trigger: CATGATCACACGGCTCCGCCACCCAGTGTCAACCAA...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAATTCCACTGGCCCAGCTaGACCACTCCAAACTGGCCA +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKFHWPS*TTPNWP
Trigger: TGGCCAGTTTGGAGTGGTCCAGCTGGGCCAGTGGAA...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTGGAGTTGCTGAAATGTaGGGCGCTTTTCTGGAAGCT +
Preference number: 4 (lower is better)
Translates to: NLPQTVPQRTNIQMPETFGVAEM*GAFLEA
Trigger: AGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCC...AAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAGGTGGCGGAGCCGTGTaGTCATGCCTGCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKGGGAV*SCLLNY
Trigger: ATAATTCAGCAGGCATGATCACACGGCTCCGCCACC...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp GGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGAAGATGGGGTATTTCTTTaGGCATACTCCGTAGAACTT +
Preference number: 4 (lower is better)
Translates to: GVLKHQATFSASESSHLEDGVFL*AYSVEL
Trigger: AAGTTCTACGGAGTATGCTCAAAGAAATACCCCATC...TTCAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AAAGTTAGAGTTCAAAATGGCAGGGCAAAGGCAACTTGCAAACAGGCAGATAGAAAACACCTCTGGAGCTaGCCACTTGACTGGAAACTT +
Preference number: 4 (lower is better)
Translates to: KVRVQNGRAKATCKQADRKHLWS*PLDWKL
Trigger: AAGTTTCCAGTCAAGTGGTCAGCTCCAGAGGTGTTT...TCTATCTGCCTGTTTGCAAGTTGCCTTTGCCCTGCCATTTTGAACTCTAACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATCTGGTAGATGGTGTCTaGTGCCAGTTGGGGCCGGTA +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNLVDGV*CQLGPV
Trigger: TACCGGCCCCAACTGGCATCAGACACCATCTACCAG...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGCCAGCAGCTGTACATaGTCTGGTAGATGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESASSCT*SGRWCL
Trigger: CAGACACCATCTACCAGATCATGTACAGCTGCTGGC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGCAGACAGGAGTTGCTaGAATGTGGGGCGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESADRSC*NVGRFS
Trigger: AGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATAGTGCATCCTGGGGCTaGTTTGCAGCTCTGCTGGCA +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNSASWG*FAALLA
Trigger: TGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACT...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGGTGGCGGAGCCGTGTaGTCATGCCTGCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHGGGAV*SCLLNY
Trigger: ATAATTCAGCAGGCATGATCACACGGCTCCGCCACC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTTCTCGATGTATGAACTaGTGGCTCTCCAAGAAGGCC +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESSRCMN*WLSKKA
Trigger: GGCCTTCTTGGAGAGCCATCAGTTCATACATCGAGA...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTCTGGAGCTGACCACTTaGCTGGAAACTTGGTTCCTA +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESLELTT*LETWFL
Trigger: TAGGAACCAAGTTTCCAGTCAAGTGGTCAGCTCCAG...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CTTGCAAACAGGCAGATAGAGCAGGATGCTGAGAGCTCTCATCCTTTATTTTTCGCTCTCTTCATTCGATaGATAGACATAAAGAAGCCC +
Preference number: 4 (lower is better)
Translates to: LANRQIEQDAESSHPLFFALFIR*IDIKKP
Trigger: GGGCTTCTTTATGTCTATGCATCGAATGAAGAGAGC...GAAAAATAAAGGATGAGAGCTCTCAGCATCCTGCTCTATCTGCCTGTTTGCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATATCCTGGGGCTGCTTTaGAGCTCTGCTGGCAACACA +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNILGLL*SSAGNT
Trigger: TGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGAT...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACATGCTTCCCAGAGAGTaGATCCTGGGGCTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHMLPRE*ILGLLC
Trigger: GCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCAT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp GGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGAATTTCTCATCACTGATTaGGATGTGCAGATCAGCATA +
Preference number: 4 (lower is better)
Translates to: GVLKHQATFSASESSHLEFLITD*DVQISI
Trigger: TATGCTGATCTGCACATCGCAATCAGTGATGAGAAA...TTCAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACCTCCAAACTGGCCATTaGCCAGCTCCTTCAGCAAGG +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHLQTGH*PAPSAR
Trigger: CCTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAG...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGGCTTTATTTGGCTTATAGTTCCAGAAAGTTAGAGTTCAAAATGGCAGGGCAAGCTTTGCAGCTCTGCTaGCAACACAGGAACTTTCCA +
Preference number: 4 (lower is better)
Translates to: RLYLAYSSRKLEFKMAGQALQLC*QHRNFP
Trigger: TGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGC...TTGCCCTGCCATTTTGAACTCTAACTTTCTGGAACTATAAGCCAAATAAAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTAGGGCAGTCTTCCCTTaGAATATAGCGTATGTTGCT +
Preference number: 4 (lower is better)
Translates to: NLPQTVPQRTNIQMPETFRAVFP*NIAYVA
Trigger: AGCAACATACGCTATATTCCAAGGGAAGACTGCCCT...AAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACACACCGGGACCTTGTTaGCCTTGGTTGACACTGGGT +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHTPGPC*PWLTLG
Trigger: ACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACTGGACCACTCCAAACTaGCCATTGCCCAGCTCCTTC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHWTTPN*PLPSSF
Trigger: GAAGGAGCTGGGCAATGGCCAGTTTGGAGTGGTCCA...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTATGGTCTGGGCCTCCTaGAAGAATTCATCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESMVWAS*KNSSSD
Trigger: GTCAGAAGATGAATTCTTTCAGGAGGCCCAGACCAT...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACTGGAGCTGACCACTTaGCTGGAAACTTGGTTCCTA +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKLELTT*LETWFL
Trigger: TAGGAACCAAGTTTCCAGTCAAGTGGTCAGCTCCAG...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp AGGCTTTATTTGGCTTATAGTTCCAGAAAGTTAGAGTTCAAAATGGCAGGGCAAGAATATAGCGTATGTTaGTGGTTGGCTGGGAACCAC +
Preference number: 4 (lower is better)
Translates to: RLYLAYSSRKLEFKMAGQEYSVC*WLAGNH
Trigger: GTGGTTCCCAGCCAACCAGCAACATACGCTATATTC...TTGCCCTGCCATTTTGAACTCTAACTTTCTGGAACTATAAGCCAAATAAAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAGCTTTGCAGCTCTGCTaGCAACACAGGAACTTTCCA +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKALQLC*QHRNFP
Trigger: TGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGC...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGCGTATGTTGCTGGTTaGCTGGGAACCACAACTTTT +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESAYVAG*LGTTTF
Trigger: AAAAGTTGTGGTTCCCAGCCAACCAGCAACATACGC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGCTCAGATTGTGACCTaGAGATATTCCCAGCAAACC +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESAQIVT*RYSQQT
Trigger: GGTTTGCTGGGAATATCTCCAGGTCACAATCTGAGC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACCCGAAGTGGTTCTATaGCAGACAGGAGTTGCTGAA +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKPEVVL*QTGVAE
Trigger: TTCAGCAACTCCTGTCTGCCATAGAACCACTTCGGG...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAAGCGCTTTTAACCACTaGCATCGGCTCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKSAFNH*HRLSSF
Trigger: GAATGAAGAGAGCCGATGTCAGTGGTTAAAAGCGCT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTCGTCATTCCAAAGTCTaGGACTTTCACAGAGAGATC +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESRHSKV*DFHREI
Trigger: GATCTCTCTGTGAAAGTCTCAGACTTTGGAATGACG...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAAAACACCTCTGGAGCTaGCCACTTGACTGGAAACTT +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKKHLWS*PLDWKL
Trigger: AAGTTTCCAGTCAAGTGGTCAGCTCCAGAGGTGTTT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGCTGCTTTGCAGCTCTaGTGGCAACACAGGAACTTT +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNAALQL*WQHRNF
Trigger: AAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGC...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGTGTACATTCCCATCTaGCTGGAATTCCGAACCATA +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESVYIPI*LEFRTI
Trigger: TATGGTTCGGAATTCCAGCCAGATGGGAATGTACAC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGGAGTTGCTGAAATGTaGGGCGCTTTTCTGGAAGCT +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHGVAEM*GAFLEA
Trigger: AGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACAGCGCTTTTAACCACTaGCATCGGCTCTCTTCATTC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHSAFNH*HRLSSF
Trigger: GAATGAAGAGAGCCGATGTCAGTGGTTAAAAGCGCT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACATGATGCATCCATTTTaGGAACGGGAACTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHMMHPF*ERELPL
Trigger: CAAGGGCAGTTCCCGTTCTCAAAATGGATGCATCAT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACACATGGCACCCTCCTTaGTCATCTTTACAGCCACAT +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHTWHPP*SSLQPH
Trigger: ATGTGGCTGTAAAGATGATCAAGGAGGGTGCCATGT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATACATGGCACCCTCCTTaGTCATCTTTACAGCCACAT +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNTWHPP*SSLQPH
Trigger: ATGTGGCTGTAAAGATGATCAAGGAGGGTGCCATGT...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTAAAGAATTCATCTTCTaGCATGGCACCCTCCTTGAT +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESKEFIF*HGTLLD
Trigger: ATCAAGGAGGGTGCCATGTCAGAAGATGAATTCTTT...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTCTCATACAGAAGACTTGCTGCTGTATTTaGAGTAGTGAAACACCTCTG +
Preference number: 4 (lower is better)
Translates to: TVPQRTNIQMPETFLIQKTCCCI*SSETPL
Trigger: CAGAGGTGTTTCACTACTTCAAATACAGCAGCAAGT...CTTCTGTATGAGAAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGCTCTCTTCATTCGATaGATAGACATAAAGAAGCCC +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESALFIR*IDIKKP
Trigger: GGGCTTCTTTATGTCTATGCATCGAATGAAGAGAGC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGAATATAGCGTATGTTaGTGGTTGGCTGGGAACCAC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHEYSVC*WLAGNH
Trigger: GTGGTTCCCAGCCAACCAGCAACATACGCTATATTC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTCAGTTGGTTACTGCATaGAATGTCTTCCTCGCTTTT +
Preference number: 4 (lower is better)
Translates to: RTSYIALSLSTSLTNNESQLVTA*NVFLAF
Trigger: AAAAGCGAGGAAGACATTGCATGCAGTAACCAACTG...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAATACACAATCTGAAATaGGTACTGTCTCTCCACCGG +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKIHNLK*VLSLHR
Trigger: CCGGTGGAGAGACAGTACCCATTTCAGATTGTGTAT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACTTCACCAGCTTGGGATaGCTGAGTTTCATCATGGTC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHFTSLG*LSFIMV
Trigger: GACCATGATGAAACTCAGCCATCCCAAGCTGGTGAA...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACCGTCATTCCAAAGTCTaGGACTTTCACAGAGAGATC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHRHSKV*DFHREI
Trigger: GATCTCTCTGTGAAAGTCTCAGACTTTGGAATGACG...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAAAACTTGGTTCCTACTaGGCTGACATACTGATCATC +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKKLGSY*ADILII
Trigger: GATGATCAGTATGTCAGCTCAGTAGGAACCAAGTTT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAATGACATCTTTGAGGTaGTGTGAGAGGCGATATTTC +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKMTSLR*CERRYF
Trigger: GAAATATCGCCTCTCACAGCACCTCAAAGATGTCAT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATTCTCCAAGAAGGCCATaGCTTCACAGACATCATAAC +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNSPRRP*LHRHHN
Trigger: GTTATGATGTCTGTGAAGGCATGGCCTTCTTGGAGA...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACTTTTCTGGAAGCTCATaGCAGCAGCTGTACATGATC +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHFSGSS*QQLYMI
Trigger: GATCATGTACAGCTGCTGGCATGAGCTTCCAGAAAA...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACATACACAATCTGAAATaGGTACTGTCTCTCCACCGG +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHIHNLK*VLSLHR
Trigger: CCGGTGGAGAGACAGTACCCATTTCAGATTGTGTAT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATAGGGCAGTCTTCCCTTaGAATATAGCGTATGTTGCT +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNRAVFP*NIAYVA
Trigger: AGCAACATACGCTATATTCCAAGGGAAGACTGCCCT...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAACCACAACTTTTCTTTaGATAGCTGTCATATTGGGG +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKTTTFL*IAVILG
Trigger: CCCCAATATGACAGCTATTCAAAGAAAAGTTGTGGT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGATGGGGTATTTCTTTaGGCATACTCCGTAGAACTT +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHDGVFL*AYSVEL
Trigger: AAGTTCTACGGAGTATGCTCAAAGAAATACCCCATC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATACTTGCTGCTGTATTTaGAGTAGTGAAACACCTCTG +
Preference number: 4 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNTCCCI*SSETPL
Trigger: CAGAGGTGTTTCACTACTTCAAATACAGCAGCAAGT...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR GCA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAATTTCTCATCACTGATTaGGATGTGCAGATCAGCATA +
Preference number: 4 (lower is better)
Translates to: TIVKNELHCIESFYFPYKFLITD*DVQISI
Trigger: TATGCTGATCTGCACATCGCAATCAGTGATGAGAAA...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR TCA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGTTGGTGATAGTGAATaGGCTTTGGAATGGAATCAA +
Preference number: 4 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHVGDSE*ALEWNQ
Trigger: TTGATTCCATTCCAAAGCTCATTCACTATCACCAAC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACAGCCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCCTTGTTGGCCTTGGTaGACACTGGGTGGCGGAGCC +
Preference number: 5 (lower is better)
Translates to: TAGVLKHQATFSASESSHPCWPW*TLGGGA
Trigger: GGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGG...ATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS GCA 90 bp GCAGATCAGCATATGCTTCCCAGAGAGTGCATCCTGGGGCTGCTTTaGAGCTCTGCTGGCAACACAGGAACTTTCCATCCACAAAGAAGC +
Preference number: 5 (lower is better)
Translates to: ADQHMLPRECILGLL*SSAGNTGTFHPQRS
Trigger: GCTTCTTTGTGGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 90 bp GATTGCGATGTGCAGATCAGCATATGCTTCCCAGAGAGTGCATCCTaGGGCTGCTTTGCAGCTCTGCTGGCAACACAGGAACTTTCCATC +
Preference number: 5 (lower is better)
Translates to: DCDVQISICFPESAS*GCFAALLATQELSI
Trigger: GATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGATCTGCACATCGCAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp GTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAGACAGACACCGGGACCTaGTTGGCCTTGGTTGACACT +
Preference number: 5 (lower is better)
Translates to: VSVPHVSMVSMKAKRRHQTDTGT*LALVDT
Trigger: AGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGT...CTGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS GCA 90 bp GATGTGCAGATCAGCATATGCTTCCCAGAGAGTGCATCCTGGGGCTaGTTTGCAGCTCTGCTGGCAACACAGGAACTTTCCATCCACAAA +
Preference number: 5 (lower is better)
Translates to: DVQISICFPESASWG*FAALLATQELSIHK
Trigger: TTTGTGGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGATCTGCACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 90 bp ACATCATATTGCCCCTTCCACTGGCCCAGCTGGACCACTCCAAACTaGCCATTGCCCAGCTCCTTCAGCAAGGTAATCTCTTCTCTTTTC +
Preference number: 5 (lower is better)
Translates to: TSYCPFHWPSWTTPN*PLPSSFSKVISSLF
Trigger: GAAAAGAGAAGAGATTACCTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAGTGGTCCAGCTGGGCCAGTGGAAGGGGCAATATGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CATGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATTACAGCCACATCATATaGCCCCTTCCACTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: HVSVPHVSMVSMKAKRRHYSHII*PLPLAQ
Trigger: CTGGGCCAGTGGAAGGGGCAATATGATGTGGCTGTA...ATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS TCA 90 bp GGTTTATCTTGTTCCCGAAGTGGTTCTATGGCAGACAGGAGTTGCTaGAATGTGGGGCGCTTTTCTGGAAGCTCATGCCAGCAGCTGTAC +
Preference number: 5 (lower is better)
Translates to: GLSCSRSGSMADRSC*NVGRFSGSSCQQLY
Trigger: GTACAGCTGCTGGCATGAGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATAGAACCACTTCGGGAACAAGATAAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCGGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGATCCCCATGACATCTTaGAGGTGCTGTGAGAGGCGA +
Preference number: 5 (lower is better)
Translates to: PVFLSTKPPFQLLRAHILIPMTS*RCCERR
Trigger: TCGCCTCTCACAGCACCTCAAAGATGTCATGGGGAT...CAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS TCA 90 bp TCAGTAGCCTCTCTGGGAAAGTGGGAGCTCTGTGTTTCTCATCACTaGTTGCGATGTGCAGATCAGCATATGCTTCCCAGAGAGTGCATC +
Preference number: 5 (lower is better)
Translates to: SVASLGKWELCVSHH*LRCADQHMLPRECI
Trigger: GATGCACTCTCTGGGAAGCATATGCTGATCTGCACATCGCAATCAGTGATGAGAAACACAGAGCTCCCACTTTCCCAGAGAGGCTACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp AACCTCCCCCAAACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTCATCCTGGGGCTGCTTaGCAGCTCTGCTGGCAACAC +
Preference number: 5 (lower is better)
Translates to: NLPQTVPQRTNIQMPETFHPGAA*QLCWQH
Trigger: GTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATG...AAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGTTTGGGGGAGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CATGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAGGGCAGTCTTCCCTaGGAATATAGCGTATGTTGC +
Preference number: 5 (lower is better)
Translates to: HVSVPHVSMVSMKAKRRHQGSLP*EYSVCC
Trigger: GCAACATACGCTATATTCCAAGGGAAGACTGCCCTG...ATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp GTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAGTTTCAGTTTTCTTACTaGCCACCAGTCAGGGCAGTC +
Preference number: 5 (lower is better)
Translates to: VSVPHVSMVSMKAKRRHQFQFSY*PPVRAV
Trigger: GACTGCCCTGACTGGTGGCAAGTAAGAAAACTGAAA...CTGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CATGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATGACATGGCACCCTCCTaGATCATCTTTACAGCCACA +
Preference number: 5 (lower is better)
Translates to: HVSVPHVSMVSMKAKRRHDMAPS*IIFTAT
Trigger: TGTGGCTGTAAAGATGATCAAGGAGGGTGCCATGTC...ATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TGTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCATCTGGAGCTGACCACTaGACTGGAAACTTGGTTCCT +
Preference number: 5 (lower is better)
Translates to: CQCTTRVHGVHEGQKTSSSGADH*TGNLVP
Trigger: AGGAACCAAGTTTCCAGTCAAGTGGTCAGCTCCAGA...TGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS TCA 90 bp GGCAACACAGGAACTTTCCATCCACAAAGAAGCCACTGTGATACTTaGTCAACAGGTGAGGGTTGCCCCGTATCTCTTTTTGCAGCGCTT +
Preference number: 5 (lower is better)
Translates to: GNTGTFHPQRSHCDT*STGEGCPVSLFAAL
Trigger: AAGCGCTGCAAAAAGAGATACGGGGCAACCCTCACCTGTTGATCAAGTATCACAGTGGCTTCTTTGTGGATGGAAAGTTCCTGTGTTGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TCCATCAAGCCCATACCTCCTAAACCTCCCCCAAACAGTGCCACAGAGAACAAAGTCTGCTCCTCAAGGTaGACTTTTTCCACACATCTG +
Preference number: 5 (lower is better)
Translates to: SIKPIPPKPPPNSATENKVCSSR*TFSTHL
Trigger: CAGATGTGTGGAAAAAGTCAACCTTGAGGAGCAGAC...TTTGTTCTCTGTGGCACTGTTTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS TCA 90 bp TGTCATATTGGGGTAGAATGGCACCTGAAGATGATGCATCCATTTTaGGAACGGGAACTGCCCTTGGAATCTTCAGTAGCCTCTCTGGGA +
Preference number: 5 (lower is better)
Translates to: CHIGVEWHLKMMHPF*ERELPLESSVASLG
Trigger: TCCCAGAGAGGCTACTGAAGATTCCAAGGGCAGTTCCCGTTCTCAAAATGGATGCATCATCTTCAGGTGCCATTCTACCCCAATATGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 90 bp CTTGCCACCAGTCAGGGCAGTCTTCCCTTGGAATATAGCGTATGTTaGTGGTTGGCTGGGAACCACAACTTTTCTTTGAATAGCTGTCAT +
Preference number: 5 (lower is better)
Translates to: LATSQGSLPLEYSVC*WLAGNHNFSLNSCH
Trigger: ATGACAGCTATTCAAAGAAAAGTTGTGGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACCTTGTTGGCCTTGGTaGACACTGGGTGGCGGAGCC +
Preference number: 5 (lower is better)
Translates to: TIVKNELHCIESFYFPYKPCWPW*TLGGGA
Trigger: GGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGG...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CGCTCCATTGACATCATTCCTCCATCAAGCCCATACCTCCTAAACCTCCCCCAAAGATGGGGTATTTCTTaGAGCATACTCCGTAGAACT +
Preference number: 5 (lower is better)
Translates to: RSIDIIPPSSPYLLNLPQRWGIS*SILRRT
Trigger: AGTTCTACGGAGTATGCTCAAAGAAATACCCCATCT...TTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGAGGAATGATGTCAATGGAGCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS CCA 90 bp GCCACCAGTCAGGGCAGTCTTCCCTTGGAATATAGCGTATGTTGCTaGTTGGCTGGGAACCACAACTTTTCTTTGAATAGCTGTCATATT +
Preference number: 5 (lower is better)
Translates to: ATSQGSLPLEYSVCC*LAGNHNFSLNSCHI
Trigger: AATATGACAGCTATTCAAAGAAAAGTTGTGGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 90 bp GCTTTTCAGTTTTCTTACTTGCCACCAGTCAGGGCAGTCTTCCCTTaGAATATAGCGTATGTTGCTGGTTGGCTGGGAACCACAACTTTT +
Preference number: 5 (lower is better)
Translates to: AFQFSYLPPVRAVFP*NIAYVAGWLGTTTF
Trigger: AAAAGTTGTGGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAGTAAGAAAACTGAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGGGACCTTGTTGGCCTaGGTTGACACTGGGTGGCGG +
Preference number: 5 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNGTLLA*VDTGWR
Trigger: CCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCC...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGGGACCTTGTTGGCCTaGGTTGACACTGGGTGGCGG +
Preference number: 5 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHGTLLA*VDTGWR
Trigger: CCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp GGTGTTCTTAAGCACCAAGCCACCTTTTCAGCTTCTGAGAGCTCACATCTTGAACACTTGACTGGAAACTaGGTTCCTACTGAGCTGACA +
Preference number: 5 (lower is better)
Translates to: GVLKHQATFSASESSHLEHLTGN*VPTELT
Trigger: TGTCAGCTCAGTAGGAACCAAGTTTCCAGTCAAGTG...TTCAAGATGTGAGCTCTCAGAAGCTGAAAAGGTGGCTTGGTGCTTAAGAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS TCA 90 bp GATGAACTTGACTCAGGGAATCCCCATGACATCTTTGAGGTGCTGTaGGAGGCGATATTTCTTTCCAGTTGGTTACTGCATGCAATGTCT +
Preference number: 5 (lower is better)
Translates to: DELDSGNPHDIFEVL*EAIFLSSWLLHAMS
Trigger: AGACATTGCATGCAGTAACCAACTGGAAAGAAATATCGCCTCTCACAGCACCTCAAAGATGTCATGGGGATTCCCTGAGTCAAGTTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACCATCCTGGGGCTGCTTaGCAGCTCTGCTGGCAACAC +
Preference number: 5 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHHPGAA*QLCWQH
Trigger: GTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATG...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp GTCAGTGTACCACACGTGTCCATGGTGTCCATGAAGGCCAAAAGACGTCATCAGAACCACAACTTTTCTTaGAATAGCTGTCATATTGGG +
Preference number: 5 (lower is better)
Translates to: VSVPHVSMVSMKAKRRHQNHNFS*NSCHIG
Trigger: CCCAATATGACAGCTATTCAAAGAAAAGTTGTGGTT...CTGATGACGTCTTTTGGCCTTCATGGACACCATGGACACGTGTGGTACACTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TCCATCAAGCCCATACCTCCTAAACCTCCCCCAAACAGTGCCACAGAGAACAAAGATATTTCTTTCCAGTaGGTTACTGCATGCAATGTC +
Preference number: 5 (lower is better)
Translates to: SIKPIPPKPPPNSATENKDISFQ*VTACNV
Trigger: GACATTGCATGCAGTAACCAACTGGAAAGAAATATC...TTTGTTCTCTGTGGCACTGTTTGGGGGAGGTTTAGGAGGTATGGGCTTGATGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTACTCCAAACTGGCCATaGCCCAGCTCCTTCAGCAAG +
Preference number: 5 (lower is better)
Translates to: RTSYIALSLSTSLTNNESTPNWP*PSSFSK
Trigger: CTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAGT...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAACAGACACCGGGACCTaGTTGGCCTTGGTTGACACT +
Preference number: 5 (lower is better)
Translates to: TIVKNELHCIESFYFPYKTDTGT*LALVDT
Trigger: AGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACAGTGCCACAGAGAACAAATATTCAAATGCCTGAGACATTTCTCATACAGAAGTATGGCAGACAGGAGTaGCTGAAATGTGGGGCGCTT +
Preference number: 5 (lower is better)
Translates to: TVPQRTNIQMPETFLIQKYGRQE*LKCGAL
Trigger: AAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATA...CTTCTGTATGAGAAATGTCTCAGGCATTTGAATATTTGTTCTCTGTGGCACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTCAGGGCAGTCTTCCCTaGGAATATAGCGTATGTTGC +
Preference number: 5 (lower is better)
Translates to: RTSYIALSLSTSLTNNESQGSLP*EYSVCC
Trigger: GCAACATACGCTATATTCCAAGGGAAGACTGCCCTG...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAATCCCCATGACATCTTaGAGGTGCTGTGAGAGGCGA +
Preference number: 5 (lower is better)
Translates to: TIVKNELHCIESFYFPYKIPMTS*RCCERR
Trigger: TCGCCTCTCACAGCACCTCAAAGATGTCATGGGGAT...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATACTCCAAACTGGCCATaGCCCAGCTCCTTCAGCAAG +
Preference number: 5 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNTPNWP*PSSFSK
Trigger: CTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAGT...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACTACAGCCACATCATATaGCCCCTTCCACTGGCCCAG +
Preference number: 5 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHYSHII*PLPLAQ
Trigger: CTGGGCCAGTGGAAGGGGCAATATGATGTGGCTGTA...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGACATGGCACCCTCCTaGATCATCTTTACAGCCACA +
Preference number: 5 (lower is better)
Translates to: RTSYIALSLSTSLTNNESDMAPS*IIFTAT
Trigger: TGTGGCTGTAAAGATGATCAAGGAGGGTGCCATGTC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp AGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATGAGAGTGTCTGCTCCTCAAGGTaGACTTTTTCCACACATCTG +
Preference number: 5 (lower is better)
Translates to: RTSYIALSLSTSLTNNESVCSSR*TFSTHL
Trigger: CAGATGTGTGGAAAAAGTCAACCTTGAGGAGCAGAC...ACTCTCATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAATCTGGAGCTGACCACTaGACTGGAAACTTGGTTCCT +
Preference number: 5 (lower is better)
Translates to: TIVKNELHCIESFYFPYKSGADH*TGNLVP
Trigger: AGGAACCAAGTTTCCAGTCAAGTGGTCAGCTCCAGA...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATTATGGCAGACAGGAGTaGCTGAAATGTGGGGCGCTT +
Preference number: 5 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNYGRQE*LKCGAL
Trigger: AAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATA...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp ACCATTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAAGATGATGCATCCATTTaGAGAACGGGAACTGCCCTT +
Preference number: 5 (lower is better)
Translates to: TIVKNELHCIESFYFPYKDDASI*RTGTAL
Trigger: AAGGGCAGTTCCCGTTCTCAAAATGGATGCATCATC...TTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAATGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATTTTCAGTTTTCTTACTaGCCACCAGTCAGGGCAGTC +
Preference number: 5 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNFQFSY*PPVRAV
Trigger: GACTGCCCTGACTGGTGGCAAGTAAGAAAACTGAAA...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp TTGTTAAGAACGAGCTACATTGCATTGAGTCTTTCTACTTCCCTTACAAACAATCACTTGACTGGAAACTaGGTTCCTACTGAGCTGACA +
Preference number: 5 (lower is better)
Translates to: LLRTSYIALSLSTSLTNNHLTGN*VPTELT
Trigger: TGTCAGCTCAGTAGGAACCAAGTTTCCAGTCAAGTG...ATTGTTTGTAAGGGAAGTAGAAAGACTCAATGCAATGTAGCTCGTTCTTAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 90 bp ACCATTTGTTATATACTCAGTTACTATATAGATGGGGTATTTCTTTaGGCATACTCCGTAGAACTTCACCAGCTTGGGATGGCTGAGTTT +
Preference number: 5 (lower is better)
Translates to: TICYILSYYIDGVFL*AYSVELHQLGMAEF
Trigger: AAACTCAGCCATCCCAAGCTGGTGAAGTTCTACGGAGTATGCTCAAAGAAATACCCCATCTATATAGTAACTGAGTATATAACAAATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACAGATGGGGTATTTCTTaGAGCATACTCCGTAGAACT +
Preference number: 5 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHRWGIS*SILRRT
Trigger: AGTTCTACGGAGTATGCTCAAAGAAATACCCCATCT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACGATATTTCTTTCCAGTaGGTTACTGCATGCAATGTC +
Preference number: 5 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHDISFQ*VTACNV
Trigger: GACATTGCATGCAGTAACCAACTGGAAAGAAATATC...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS-3UTR CAA 90 bp CCCTTACAAACAATGAGAGTGTTAGTTAATATTGACATTTGTTCTCATCACCACAACCACAACTTTTCTTaGAATAGCTGTCATATTGGG +
Preference number: 5 (lower is better)
Translates to: PLQTMRVLVNIDICSHHHNHNFS*NSCHIG
Trigger: CCCAATATGACAGCTATTCAAAGAAAAGTTGTGGTT...GTGGTGATGAGAACAAATGTCAATATTAACTAACACTCTCATTGTTTGTAAGGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp CAGAGCCACAGACACCGGGACCTTGTTGGCCTTGGTTaGCACTGGGTGGCGGAGCCGTGTGATCATGCCTGC +
Preference number: 6 (lower is better)
Translates to: QSHRHRDLVGLG*HWVAEPCDHAC
Trigger: GCAGGCATGATCACACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 72 bp CTTCCCAGAGCCACAGACACCGGGACCTTGTTGGCCTaGGTTGACACTGGGTGGCGGAGCCGTGTGATCATG +
Preference number: 6 (lower is better)
Translates to: LPRATDTGTLLA*VDTGWRSRVIM
Trigger: CATGATCACACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTGGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 72 bp CAAATTCCACTTCCCAGAGCCACAGACACCGGGACCTaGTTGGCCTTGGTTGACACTGGGTGGCGGAGCCGT +
Preference number: 6 (lower is better)
Translates to: QIPLPRATDTGT*LALVDTGWRSR
Trigger: ACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTGGGAAGTGGAATTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp CAAATTCCACTTCCCAGAGCCACAGACACCGGGACCTTGTTGGCCTaGGTTGACACTGGGTGGCGGAGCCGTGTGATCATGCCTGCTGAA +
Preference number: 6 (lower is better)
Translates to: QIPLPRATDTGTLLA*VDTGWRSRVIMPAE
Trigger: TTCAGCAGGCATGATCACACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTGGGAAGTGGAATTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp AGTTCCCAAATTCCACTTCCCAGAGCCACAGACACCGGGACCTTGTaGGCCTTGGTTGACACTGGGTGGCGGAGCCGTGTGATCATGCCT +
Preference number: 6 (lower is better)
Translates to: SSQIPLPRATDTGTL*ALVDTGWRSRVIMP
Trigger: AGGCATGATCACACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTGGGAAGTGGAATTTGGGAACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp TTCAGTTCCCAAATTCCACTTCCCAGAGCCACAGACACCGGGACCTaGTTGGCCTTGGTTGACACTGGGTGGCGGAGCCGTGTGATCATG +
Preference number: 6 (lower is better)
Translates to: FSSQIPLPRATDTGT*LALVDTGWRSRVIM
Trigger: CATGATCACACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTCTGTGGCTCTGGGAAGTGGAATTTGGGAACTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 72 bp GACACCGGGACCTTGTTGGCCTTGGTTGACACTGGGTaGCGGAGCCGTGTGATCATGCCTGCTGAATTATGT +
Preference number: 6 (lower is better)
Translates to: DTGTLLALVDTG*RSRVIMPAELC
Trigger: ACATAATTCAGCAGGCATGATCACACGGCTCCGCCACCCAGTGTCAACCAAGGCCAACAAGGTCCCGGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 72 bp GCATATGCTTCCCAGAGAGTGCATCCTGGGGCTGCTTaGCAGCTCTGCTGGCAACACAGGAACTTTCCATCC +
Preference number: 6 (lower is better)
Translates to: AYASQRVHPGAA*QLCWQHRNFPS
Trigger: GGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp TCCCAGAGAGTGCATCCTGGGGCTGCTTTGCAGCTCTaGTGGCAACACAGGAACTTTCCATCCACAAAGAAG +
Preference number: 6 (lower is better)
Translates to: SQRVHPGAALQL*WQHRNFPSTKK
Trigger: CTTCTTTGTGGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp CATATGCTTCCCAGAGAGTGCATCCTGGGGCTGCTTTaGAGCTCTGCTGGCAACACAGGAACTTTCCATCCA +
Preference number: 6 (lower is better)
Translates to: HMLPRECILGLL*SSAGNTGTFHP
Trigger: TGGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp ATCAGCATATGCTTCCCAGAGAGTGCATCCTGGGGCTaGTTTGCAGCTCTGCTGGCAACACAGGAACTTTCC +
Preference number: 6 (lower is better)
Translates to: ISICFPESASWG*FAALLATQELS
Trigger: GGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 72 bp CAGAGAGTGCATCCTGGGGCTGCTTTGCAGCTCTGCTaGCAACACAGGAACTTTCCATCCACAAAGAAGCCA +
Preference number: 6 (lower is better)
Translates to: QRVHPGAALQLC*QHRNFPSTKKP
Trigger: TGGCTTCTTTGTGGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 72 bp ATCATCTTTACAGCCACATCATATTGCCCCTTCCACTaGCCCAGCTGGACCACTCCAAACTGGCCATTGCCC +
Preference number: 6 (lower is better)
Translates to: IIFTATSYCPFH*PSWTTPNWPLP
Trigger: GGGCAATGGCCAGTTTGGAGTGGTCCAGCTGGGCCAGTGGAAGGGGCAATATGATGTGGCTGTAAAGATGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp TATTGCCCCTTCCACTGGCCCAGCTGGACCACTCCAAACTGGCCATaGCCCAGCTCCTTCAGCAAGGTAATCTCTTCTCTTTTCAGTTCC +
Preference number: 6 (lower is better)
Translates to: YCPFHWPSWTTPNWP*PSSFSKVISSLFSS
Trigger: GGAACTGAAAAGAGAAGAGATTACCTTGCTGAAGGAGCTGGGCAATGGCCAGTTTGGAGTGGTCCAGCTGGGCCAGTGGAAGGGGCAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp TGTTCCCGAAGTGGTTCTATGGCAGACAGGAGTTGCTaGAATGTGGGGCGCTTTTCTGGAAGCTCATGCCAG +
Preference number: 6 (lower is better)
Translates to: CSRSGSMADRSC*NVGRFSGSSCQ
Trigger: CTGGCATGAGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATAGAACCACTTCGGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp TGCAGATCAGCATATGCTTCCCAGAGAGTGCATCCTGGGGCTGCTTaGCAGCTCTGCTGGCAACACAGGAACTTTCCATCCACAAAGAAG +
Preference number: 6 (lower is better)
Translates to: CRSAYASQRVHPGAA*QLCWQHRNFPSTKK
Trigger: CTTCTTTGTGGATGGAAAGTTCCTGTGTTGCCAGCAGAGCTGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGATCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp CCACCAAACAGTTCCGAGCAGCCAAATCTCGATGTATaGACTGATGGCTCTCCAAGAAGGCCATGCCTTCAC +
Preference number: 6 (lower is better)
Translates to: PPNSSEQPNLDV*TDGSPRRPCLH
Trigger: GTGAAGGCATGGCCTTCTTGGAGAGCCATCAGTTCATACATCGAGATTTGGCTGCTCGGAACTGTTTGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp TCATGGTTTATCTTGTTCCCGAAGTGGTTCTATGGCAGACAGGAGTaGCTGAAATGTGGGGCGCTTTTCTGGAAGCTCATGCCAGCAGCT +
Preference number: 6 (lower is better)
Translates to: SWFILFPKWFYGRQE*LKCGALFWKLMPAA
Trigger: AGCTGCTGGCATGAGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATAGAACCACTTCGGGAACAAGATAAACCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp GGGGTAGAATGGCACCTGAAGATGATGCATCCATTTTaGGAACGGGAACTGCCCTTGGAATCTTCAGTAGCC +
Preference number: 6 (lower is better)
Translates to: GVEWHLKMMHPF*ERELPLESSVA
Trigger: GGCTACTGAAGATTCCAAGGGCAGTTCCCGTTCTCAAAATGGATGCATCATCTTCAGGTGCCATTCTACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp TTTCTCATCACTGATTGCGATGTGCAGATCAGCATATaGTTCCCAGAGAGTGCATCCTGGGGCTGCTTTGCA +
Preference number: 6 (lower is better)
Translates to: FLITDCDVQISI*FPESASWGCFA
Trigger: TGCAAAGCAGCCCCAGGATGCACTCTCTGGGAAGCATATGCTGATCTGCACATCGCAATCAGTGATGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp GTGGGAGCTCTGTGTTTCTCATCACTGATTGCGATGTaGAGATCAGCATATGCTTCCCAGAGAGTGCATCCT +
Preference number: 6 (lower is better)
Translates to: VGALCFSSLIAM*RSAYASQRVHP
Trigger: AGGATGCACTCTCTGGGAAGCATATGCTGATCTGCACATCGCAATCAGTGATGAGAAACACAGAGCTCCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 72 bp TTTTCTTACTTGCCACCAGTCAGGGCAGTCTTCCCTTaGAATATAGCGTATGTTGCTGGTTGGCTGGGAACC +
Preference number: 6 (lower is better)
Translates to: FSYLPPVRAVFP*NIAYVAGWLGT
Trigger: GGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAGTAAGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 72 bp GTTTTCTTACTTGCCACCAGTCAGGGCAGTCTTCCCTaGGAATATAGCGTATGTTGCTGGTTGGCTGGGAAC +
Preference number: 6 (lower is better)
Translates to: VFLLATSQGSLP*EYSVCCWLAGN
Trigger: GTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAGTAAGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 72 bp ATCTTGTTCCCGAAGTGGTTCTATGGCAGACAGGAGTaGCTGAAATGTGGGGCGCTTTTCTGGAAGCTCATG +
Preference number: 6 (lower is better)
Translates to: ILFPKWFYGRQE*LKCGALFWKLM
Trigger: CATGAGCTTCCAGAAAAGCGCCCCACATTTCAGCAACTCCTGTCTGCCATAGAACCACTTCGGGAACAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp TCTCTGGGAAAGTGGGAGCTCTGTGTTTCTCATCACTaGTTGCGATGTGCAGATCAGCATATGCTTCCCAGA +
Preference number: 6 (lower is better)
Translates to: SLGKWELCVSHH*LRCADQHMLPR
Trigger: TCTGGGAAGCATATGCTGATCTGCACATCGCAATCAGTGATGAGAAACACAGAGCTCCCACTTTCCCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp AAACAGTTCCGAGCAGCCAAATCTCGATGTATGAACTaGTGGCTCTCCAAGAAGGCCATGCCTTCACAGACA +
Preference number: 6 (lower is better)
Translates to: KQFRAAKSRCMN*WLSKKAMPSQT
Trigger: TGTCTGTGAAGGCATGGCCTTCTTGGAGAGCCATCAGTTCATACATCGAGATTTGGCTGCTCGGAACTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp TGGGAAAGTGGGAGCTCTGTGTTTCTCATCACTGATTaGGATGTGCAGATCAGCATATGCTTCCCAGAGAGT +
Preference number: 6 (lower is better)
Translates to: WESGSSVFLITD*DVQISICFPES
Trigger: ACTCTCTGGGAAGCATATGCTGATCTGCACATCGCAATCAGTGATGAGAAACACAGAGCTCCCACTTTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp CGCTTTTCAGTTTTCTTACTTGCCACCAGTCAGGGCAGTCTTCCCTaGGAATATAGCGTATGTTGCTGGTTGGCTGGGAACCACAACTTT +
Preference number: 6 (lower is better)
Translates to: RFSVFLLATSQGSLP*EYSVCCWLAGNHNF
Trigger: AAAGTTGTGGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAGTAAGAAAACTGAAAAGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CCA 72 bp CAGGGCAGTCTTCCCTTGGAATATAGCGTATGTTGCTaGTTGGCTGGGAACCACAACTTTTCTTTGAATAGC +
Preference number: 6 (lower is better)
Translates to: QGSLPLEYSVCC*LAGNHNFSLNS
Trigger: GCTATTCAAAGAAAAGTTGTGGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp CAAACCAGTCATAAGCATGCAGATTTTCCTCTTCTTCTGATGAACTaGACTCAGGGAATCCCCATGACATCTTTGAGGTGCTGTGAGAGG +
Preference number: 6 (lower is better)
Translates to: QTSHKHADFPLLLMN*TQGIPMTSLRCCER
Trigger: CCTCTCACAGCACCTCAAAGATGTCATGGGGATTCCCTGAGTCAAGTTCATCAGAAGAAGAGGAAAATCTGCATGCTTATGACTGGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp AGTCAGGGCAGTCTTCCCTTGGAATATAGCGTATGTTaGTGGTTGGCTGGGAACCACAACTTTTCTTTGAAT +
Preference number: 6 (lower is better)
Translates to: SQGSLPLEYSVC*WLAGNHNFSLN
Trigger: ATTCAAAGAAAAGTTGTGGTTCCCAGCCAACCAGCAACATACGCTATATTCCAAGGGAAGACTGCCCTGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 72 bp CTGATGAACTTGACTCAGGGAATCCCCATGACATCTTaGAGGTGCTGTGAGAGGCGATATTTCTTTCCAGTT +
Preference number: 6 (lower is better)
Translates to: LMNLTQGIPMTS*RCCERRYFFPV
Trigger: AACTGGAAAGAAATATCGCCTCTCACAGCACCTCAAAGATGTCATGGGGATTCCCTGAGTCAAGTTCATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS CAA 90 bp TTGGTTACTGCATGCAATGTCTTCCTCGCTTTTCAGTTTTCTTACTaGCCACCAGTCAGGGCAGTCTTCCCTTGGAATATAGCGTATGTT +
Preference number: 6 (lower is better)
Translates to: LVTACNVFLAFQFSY*PPVRAVFPWNIAYV
Trigger: AACATACGCTATATTCCAAGGGAAGACTGCCCTGACTGGTGGCAAGTAAGAAAACTGAAAAGCGAGGAAGACATTGCATGCAGTAACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp CTGATCATCAAGGACATATCTCGTCATTCCAAAGTCTaGGACTTTCACAGAGAGATCACTGTCCACCAAACA +
Preference number: 6 (lower is better)
Translates to: LIIKDISRHSKV*DFHREITVHQT
Trigger: TGTTTGGTGGACAGTGATCTCTCTGTGAAAGTCTCAGACTTTGGAATGACGAGATATGTCCTTGATGATCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS GCA 72 bp TGCTGTGAGAGGCGATATTTCTTTCCAGTTGGTTACTaGATGCAATGTCTTCCTCGCTTTTCAGTTTTCTTA +
Preference number: 6 (lower is better)
Translates to: CCERRYFFPVGY*MQCLPRFSVFL
Trigger: TAAGAAAACTGAAAAGCGAGGAAGACATTGCATGCAGTAACCAACTGGAAAGAAATATCGCCTCTCACAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9
CDS TCA 72 bp TATATACTCAGTTACTATATAGATGGGGTATTTCTTTaGGCATACTCCGTAGAACTTCACCAGCTTGGGATG +
Preference number: 6 (lower is better)
Translates to: YILSYYIDGVFL*AYSVELHQLGM
Trigger: CATCCCAAGCTGGTGAAGTTCTACGGAGTATGCTCAAAGAAATACCCCATCTATATAGTAACTGAGTATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112263.2
ENSMUST00000112265.9