Pregenerated sensors for BMP8A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032726Ensembl transcript IDs: ENSMUST00000040496.6, ENSMUST00000102641.10
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTTCAGTGCTGACCCCAGACCTCTCAGTTAGCATAGCTCTGGGATaGTGTGTGCATTCAGTCTATGCTTGGGGTAGGAGGATGGAGAGG | + |
|
Preference number: 1 (lower is better) Translates to: PSVLTPDLSVSIALG*CVHSVYAWGRRMER Trigger: CCTCTCCATCCTCCTACCCCAAGCATAGACTGAATGCACACAGCATCCCAGAGCTATGCTAACTGAGAGGTCTGGGGTCAGCACTGAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR TCA 90 bp | AATTCCAGGGCCTTCTTAGACCATCCAGAATTTGCCATTGTGGGCTaGGGATGGCCAAGGATCAGTCTTCCTCATGTGGGCCTTCAGTGC | + |
|
Preference number: 1 (lower is better) Translates to: NSRAFLDHPEFAIVG*GWPRISLPHVGLQC Trigger: GCACTGAAGGCCCACATGAGGAAGACTGATCCTTGGCCATCCTCAGCCCACAATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR GCA 90 bp | TCATCTAGTTTAGAATTCCAGGGCCTTCTTAGACCATCCAGAATTTaGCATTGTGGGCTGAGGATGGCCAAGGATCAGTCTTCCTCATGT | + |
|
Preference number: 1 (lower is better) Translates to: SSSLEFQGLLRPSRI*HCGLRMAKDQSSSC Trigger: ACATGAGGAAGACTGATCCTTGGCCATCCTCAGCCCACAATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTCTAAACTAGATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR TCA 90 bp | TTTTCTAACAAGCTAGCTCTGATTTCAAGGAGTACAGCGATGCATTaGTCTAAGTGTATGTGTCTGTTATACCTAAAAATGTCCCAACTG | + |
|
Preference number: 1 (lower is better) Translates to: FSNKLALISRSTAMH*SKCMCLLYLKMSQL Trigger: CAGTTGGGACATTTTTAGGTATAACAGACACATACACTTAGATCAATGCATCGCTGTACTCCTTGAAATCAGAGCTAGCTTGTTAGAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCCAGTGGCCAGGGGAAGTaGAGGGCCTCCCATTGCCCC | + |
|
Preference number: 2 (lower is better) Translates to: PAPETGSFYVALNSQRFSSGQGK*RASHCP Trigger: GGGGCAATGGGAGGCCCTTCACTTCCCCTGGCCACT...GGAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | TCATGTGGGCCTTCAGTGCTGACCCCAGACCTCTCAGTTAGCATAGCTCTGGGACTTGGGGTAGGAGGATaGAGAGGGCGGGGTGATAGC | + |
|
Preference number: 2 (lower is better) Translates to: SCGPSVLTPDLSVSIALGLGVGG*RGRGDS Trigger: GCTATCACCCCGCCCTCTCCATCCTCCTACCCCAAG...TCCCAGAGCTATGCTAACTGAGAGGTCTGGGGTCAGCACTGAAGGCCCACATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | TCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCAGGGTTTCCTGCCTCTaGAGAGGGGCCCGGCCAGAT | + |
|
Preference number: 2 (lower is better) Translates to: SCSRDRLFLCGLELTEILRVSCL*RGARPD Trigger: ATCTGGCCGGGCCCCTCTCCAGAGGCAGGAAACCCT...GAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | TGGTGCAGAGAGCCCAGATCATCTAGTTTAGAATTCCAGGGCCTTCTTAGACCAAGTGGCCAGGGGAAGTaGAGGGCCTCCCATTGCCCC | + |
|
Preference number: 2 (lower is better) Translates to: WCREPRSSSLEFQGLLRPSGQGK*RASHCP Trigger: GGGGCAATGGGAGGCCCTTCACTTCCCCTGGCCACT...TGGTCTAAGAAGGCCCTGGAATTCTAAACTAGATGATCTGGGCTCTCTGCACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCCAGCCCGCAAACCCCATaGAGGACAGAGGAACTGGGA | + |
|
Preference number: 2 (lower is better) Translates to: PAPETGSFYVALNSQRFSSPQTP*RTEELG Trigger: TCCCAGTTCCTCTGTCCTTCATGGGGTTTGCGGGCT...GGAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | TCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCGTGGGCCTTCAGTGCTaGCCCCAGACCTCTCAGTTA | + |
|
Preference number: 2 (lower is better) Translates to: SCSRDRLFLCGLELTEILVGLQC*PQTSQL Trigger: TAACTGAGAGGTCTGGGGTCAGCACTGAAGGCCCAC...GAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR GCA 90 bp | GAATTCCAGGGCCTTCTTAGACCATCCAGAATTTGCCATTGTGGGCTGAGGATGCATAGAAGGGTTTCCTaGCTCTGGAGAGGGGCCCGG | + |
|
Preference number: 2 (lower is better) Translates to: EFQGLLRPSRICHCGLRMHRRVS*LWRGAR Trigger: CCGGGCCCCTCTCCAGAGGCAGGAAACCCTTCTATG...CATCCTCAGCCCACAATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | CCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCCTTTGCCATTGTGGGCTaGGGATGGCCAAGGATCAGT | + |
|
Preference number: 2 (lower is better) Translates to: PAPETGSFYVALNSQRFSFAIVG*GWPRIS Trigger: ACTGATCCTTGGCCATCCTCAGCCCACAATGGCAAA...GGAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | TGGTGCAGAGAGCCCAGATCATCTAGTTTAGAATTCCAGGGCCTTCTTAGACCACTTGGGGTAGGAGGATaGAGAGGGCGGGGTGATAGC | + |
|
Preference number: 2 (lower is better) Translates to: WCREPRSSSLEFQGLLRPLGVGG*RGRGDS Trigger: GCTATCACCCCGCCCTCTCCATCCTCCTACCCCAAG...TGGTCTAAGAAGGCCCTGGAATTCTAAACTAGATGATCTGGGCTCTCTGCACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | TCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCCTGTCTTTTGCCATTGTGGGCTaGGGATGGCCAAGGATCAGT | + |
|
Preference number: 2 (lower is better) Translates to: SRDRLFLCGLELTEILLSFAIVG*GWPRIS Trigger: ACTGATCCTTGGCCATCCTCAGCCCACAATGGCAAA...AGACAGGAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | AGATCATCTAGTTTAGAATTCCAGGGCCTTCTTAGACCATCCAGAATTTGCCATAGGGTTTCCTGCCTCTaGAGAGGGGCCCGGCCAGAT | + |
|
Preference number: 2 (lower is better) Translates to: RSSSLEFQGLLRPSRICHRVSCL*RGARPD Trigger: ATCTGGCCGGGCCCCTCTCCAGAGGCAGGAAACCCT...ATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTCTAAACTAGATGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | GACCTCTCAGTTAGCATAGCTCTGGGATGCTGTGTGCATTCAGTCTATGCTTGGAATTTTAGCAGGAAGTaGCCAGGGGAAGTGAAGGGC | + |
|
Preference number: 2 (lower is better) Translates to: DLSVSIALGCCVHSVYAWNFSRK*PGEVKG Trigger: GCCCTTCACTTCCCCTGGCCACTTCCTGCTAAAATT...CCAAGCATAGACTGAATGCACACAGCATCCCAGAGCTATGCTAACTGAGAGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | TCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCCTGTCTCATTCAGTCTATGCTTaGGGTAGGAGGATGGAGAGG | + |
|
Preference number: 2 (lower is better) Translates to: SRDRLFLCGLELTEILLSHSVYA*GRRMER Trigger: CCTCTCCATCCTCCTACCCCAAGCATAGACTGAATG...AGACAGGAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR TCA 90 bp | ACATGCACCGCTATACCTGGCTCTGATTCTTTTTCTAACAAGCTAGCTCTGATTAGCCCGCAAACCCCATaGAGGACAGAGGAACTGGGA | + |
|
Preference number: 2 (lower is better) Translates to: TCTAIPGSDSFSNKLALISPQTP*RTEELG Trigger: TCCCAGTTCCTCTGTCCTTCATGGGGTTTGCGGGCT...AATCAGAGCTAGCTTGTTAGAAAAAGAATCAGAGCCAGGTATAGCGGTGCATGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | TGTCCCAACTGCCACAATGAATGGTGCAGAGAGCCCAGATCATCTAGTTTAGAAAATTTTAGCAGGAAGTaGCCAGGGGAAGTGAAGGGC | + |
|
Preference number: 2 (lower is better) Translates to: CPNCHNEWCREPRSSSLENFSRK*PGEVKG Trigger: GCCCTTCACTTCCCCTGGCCACTTCCTGCTAAAATT...TTCTAAACTAGATGATCTGGGCTCTCTGCACCATTCATTGTGGCAGTTGGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR CCA 90 bp | GAATTCCAGGGCCTTCTTAGACCATCCAGAATTTGCCATTGTGGGCTGAGGATGGAAGGACAGAGGAACTaGGAAAGGACCAGAATTTTA | + |
|
Preference number: 2 (lower is better) Translates to: EFQGLLRPSRICHCGLRMEGQRN*ERTRIL Trigger: TAAAATTCTGGTCCTTTCCCAGTTCCTCTGTCCTTC...CATCCTCAGCCCACAATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR-3UTR GCA 90 bp | AGATCATCTAGTTTAGAATTCCAGGGCCTTCTTAGACCATCCAGAATTTGCCATAGCATAGCTCTGGGATaGTGTGTGCATTCAGTCTAT | + |
|
Preference number: 2 (lower is better) Translates to: RSSSLEFQGLLRPSRICHSIALG*CVHSVY Trigger: ATAGACTGAATGCACACAGCATCCCAGAGCTATGCT...ATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTCTAAACTAGATGATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR TCA 72 bp | TTCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTaGACTCACAGAGATTCTCCTGTCTCTGTCTCTTTA | + |
|
Preference number: 3 (lower is better) Translates to: FLLPRQALSMWP*THRDSPVSVSL Trigger: TAAAGAGACAGAGACAGGAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR GCA 72 bp | TTAGAATTCCAGGGCCTTCTTAGACCATCCAGAATTTaGCATTGTGGGCTGAGGATGGCCAAGGATCAGTCT | + |
|
Preference number: 3 (lower is better) Translates to: LEFQGLLRPSRI*HCGLRMAKDQS Trigger: AGACTGATCCTTGGCCATCCTCAGCCCACAATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| 3UTR TCA 72 bp | AAGCTAGCTCTGATTTCAAGGAGTACAGCGATGCATTaGTCTAAGTGTATGTGTCTGTTATACCTAAAAATG | + |
|
Preference number: 3 (lower is better) Translates to: KLALISRSTAMH*SKCMCLLYLKM Trigger: CATTTTTAGGTATAACAGACACATACACTTAGATCAATGCATCGCTGTACTCCTTGAAATCAGAGCTAGCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR TCA 90 bp | AGAAGGGTTTCCTGCCTCTGGAGAGGGGCCCGGCCAGATGGTAAGGTAGTAGAAGGCAGCCACAGGCCTTaGCCACCATGTTACGGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: RRVSCLWRGARPDGKVVEGSHRP*PPCYGV Trigger: AACACCGTAACATGGTGGTCAAGGCCTGTGGCTGCC...TTCTACTACCTTACCATCTGGCCGGGCCCCTCTCCAGAGGCAGGAAACCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR TCA 90 bp | AGGGCCTCCCATTGCCCCTGTCTGTGCTATGATAACATAGAAGGGTTTCCTGCCGGCAGCCACAGGCCTTaGCCACCATGTTACGGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: RASHCPCLCYDNIEGFPAGSHRP*PPCYGV Trigger: AACACCGTAACATGGTGGTCAAGGCCTGTGGCTGCC...GGCAGGAAACCCTTCTATGTTATCATAGCACAGACAGGGGCAATGGGAGGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR GCA 90 bp | GATGCTGTGTGCATTCAGTCTATGCTTGGGGTAGGAGGATGGAGAGGGCGGGGTTTCGTTTTCTTTGGCTaGCTCCTCTTCAGTGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: DAVCIQSMLGVGGWRGRGFVFFG*LLFSGL Trigger: GAGACCACTGAAGAGGAGGCAGCCAAAGAAAACGAA...ACCCCGCCCTCTCCATCCTCCTACCCCAAGCATAGACTGAATGCACACAGCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR GCA 90 bp | GACCTCTCAGTTAGCATAGCTCTGGGATGCTGTGTGCATTCAGTCTATGCTTGGGGTGGGTGCACAGCATaGCTTGGGGACAACATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: DLSVSIALGCCVHSVYAWGGCTA*LGDNIW Trigger: CCAGATGTTGTCCCCAAGGCATGCTGTGCACCCACC...CCAAGCATAGACTGAATGCACACAGCATCCCAGAGCTATGCTAACTGAGAGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR GCA 90 bp | TCCCATTGCCCCTGTCTGTGCTATGATAACATAGAAGGGTTTCCTGCCTCTGGAGGTGGGTGCACAGCATaGCTTGGGGACAACATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SHCPCLCYDNIEGFPASGGGCTA*LGDNIW Trigger: CCAGATGTTGTCCCCAAGGCATGCTGTGCACCCACC...TCCAGAGGCAGGAAACCCTTCTATGTTATCATAGCACAGACAGGGGCAATGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR GCA 90 bp | TCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCAGGTGCACCAGAGACTaGAAGATGGCATGGTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SCSRDRLFLCGLELTEILRCTRD*KMAWLV Trigger: CACCAACCATGCCATCTTGCAGTCTCTGGTGCACCT...GAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102641.10 |
||
| CDS-3UTR GCA 90 bp | TCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCTTCGTTTTCTTTGGCTaGCTCCTCTTCAGTGGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SCSRDRLFLCGLELTEILFVFFG*LLFSGL Trigger: GAGACCACTGAAGAGGAGGCAGCCAAAGAAAACGAA...GAGAATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CCA 90 bp | TTTTCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTCTCGTTCGTTTTCTTTaGCTGCCTCCTCTTCAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: FSCSRDRLFLCGLELTEILVRFL*LPPLQW Trigger: CCACTGAAGAGGAGGCAGCCAAAGAAAACGAACGAG...AATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CCA 90 bp | GGATTAATGACATGCACCGCTATACCTGGCTCTGATTCTTTTTCTAACAAGCTACTCGTTCGTTTTCTTTaGCTGCCTCCTCTTCAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GLMTCTAIPGSDSFSNKLLVRFL*LPPLQW Trigger: CCACTGAAGAGGAGGCAGCCAAAGAAAACGAACGAG...TAGCTTGTTAGAAAAAGAATCAGAGCCAGGTATAGCGGTGCATGTCATTAATCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CAA 90 bp | GATGCTGTGTGCATTCAGTCTATGCTTGGGGTAGGAGGATGGAGAGGGCGGGGTATGTGGAGGGTTGTGTaGAGCGGGTGGGTGCTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: DAVCIQSMLGVGGWRGRGMWRVV*SGWVLG Trigger: ACCCAGCACCCACCCGCTCAACACAACCCTCCACAT...ACCCCGCCCTCTCCATCCTCCTACCCCAAGCATAGACTGAATGCACACAGCATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CAA 90 bp | GATGCTGTGTGCATTCAGTCTATGCTTGGGGTAGGAGGATGGAGAGGGCGGGGTTCGCGTTCCACCATGTaGACGAAGCTCATGACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: DAVCIQSMLGVGGWRGRGSRSTM*TKLMTR Trigger: CCTGGTCATGAGCTTCGTCAACATGGTGGAACGCGA...ACCCCGCCCTCTCCATCCTCCTACCCCAAGCATAGACTGAATGCACACAGCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CAA 90 bp | GACCTCTCAGTTAGCATAGCTCTGGGATGCTGTGTGCATTCAGTCTATGCTTGGATGTGGAGGGTTGTGTaGAGCGGGTGGGTGCTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: DLSVSIALGCCVHSVYAWMWRVV*SGWVLG Trigger: ACCCAGCACCCACCCGCTCAACACAACCCTCCACAT...CCAAGCATAGACTGAATGCACACAGCATCCCAGAGCTATGCTAACTGAGAGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CAA 90 bp | TTTTCCTGCTCCCGAGACAGGCTCTTTCTATGTGGCCTTGAACTCACAGAGATTTCGCGTTCCACCATGTaGACGAAGCTCATGACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: FSCSRDRLFLCGLELTEISRSTM*TKLMTR Trigger: CCTGGTCATGAGCTTCGTCAACATGGTGGAACGCGA...AATCTCTGTGAGTTCAAGGCCACATAGAAAGAGCCTGTCTCGGGAGCAGGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS-3UTR CAA 90 bp | AGATCATCTAGTTTAGAATTCCAGGGCCTTCTTAGACCATCCAGAATTTGCCATGCTCGTTCGTTTTCTTaGGCTGCCTCCTCTTCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: RSSSLEFQGLLRPSRICHARSFS*AASSSV Trigger: CACTGAAGAGGAGGCAGCCAAAGAAAACGAACGAGC...ATGGCAAATTCTGGATGGTCTAAGAAGGCCCTGGAATTCTAAACTAGATGATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS GCA 72 bp | CGTTTTCTTTGGCTGCCTCCTCTTCAGTGGTCTCGCTaGCCGAGGGGCCCGCACAGGACTCTGGCTGGCCCT | + |
|
Preference number: 6 (lower is better) Translates to: RFLWLPPLQWSR*PRGPHRTLAGP Trigger: AGGGCCAGCCAGAGTCCTGTGCGGGCCCCTCGGGCAGCGAGACCACTGAAGAGGAGGCAGCCAAAGAAAACG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS CCA 72 bp | TGTGGTGGCCCGCCGTCGTCGTCATCGGTCATGGCGTaGTATAGGTCCAACATGAAGAGGGGCGCGGACGCT | + |
|
Preference number: 6 (lower is better) Translates to: CGGPPSSSSVMA*YRSNMKRGADA Trigger: AGCGTCCGCGCCCCTCTTCATGTTGGACCTATACCACGCCATGACCGATGACGACGACGGCGGGCCACCACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS CCA 72 bp | GAGTTTGTTGGGGTGCGGAAGCTCGTTCGTTTTCTTTaGCTGCCTCCTCTTCAGTGGTCTCGCTGCCCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: EFVGVRKLVRFL*LPPLQWSRCPR Trigger: CCTCGGGCAGCGAGACCACTGAAGAGGAGGCAGCCAAAGAAAACGAACGAGCTTCCGCACCCCAACAAACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||
| CDS CAA 72 bp | GGAGTTTGTTGGGGTGCGGAAGCTCGTTCGTTTTCTTaGGCTGCCTCCTCTTCAGTGGTCTCGCTGCCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: GVCWGAEARSFS*AASSSVVSLPE Trigger: CTCGGGCAGCGAGACCACTGAAGAGGAGGCAGCCAAAGAAAACGAACGAGCTTCCGCACCCCAACAAACTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040496.6 ENSMUST00000102641.10 |
||