RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BMP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032179

Ensembl transcript IDs: ENSMUST00000012281.8

Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTTCCAGCACATTTTATGCATGAAATGACTCTTGTCTGTAGGGAATaGAATGGAGTACATGTGATTATTTCCTTACTTTGGGTTAAGTTT +
Preference number: 1 (lower is better)
Translates to: VPAHFMHEMTLVCRE*NGVHVIISLLWVKF
Trigger: AAACTTAACCCAAAGTAAGGAAATAATCACATGTACTCCATTCCATTCCCTACAGACAAGAGTCATTTCATGCATAAAATGTGCTGGAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR TCA 90 bp CGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCGGAATGGAGTACATGTaGTTATTTCCTTACTTTGGG +
Preference number: 2 (lower is better)
Translates to: RTTLHTTPEPSLPYLLMLGMEYM*LFPYFG
Trigger: CCCAAAGTAAGGAAATAATCACATGTACTCCATTCC...GAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR CCA 90 bp CGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCCTTGTCTGTAGGGAATaGAATGGAGTACATGTGATT +
Preference number: 2 (lower is better)
Translates to: RTTLHTTPEPSLPYLLMLLVCRE*NGVHVI
Trigger: AATCACATGTACTCCATTCCATTCCCTACAGACAAG...GAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR TCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCATAGAGAGATGAAATaGCCCAGGTTGATTTTAGGA +
Preference number: 2 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHHREMK*PRLILG
Trigger: TCCTAAAATCAACCTGGGTCATTTCATCTCTCTATG...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR GCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACTACCCTACTTACTCATaGTCAGAGGAAGTTTTCCAA +
Preference number: 2 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHYPTYS*SEEVFQ
Trigger: TTGGAAAACTTCCTCTGAGCATGAGTAAGTAGGGTA...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR CCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTGCTGTTTTAAAATGGTaGTTCTGTCAAAGCAACTCT +
Preference number: 2 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPAVLKW*FCQSNS
Trigger: AGAGTTGCTTTGACAGAACCACCATTTTAAAACAGC...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR CCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACTTAGCTGTTTTAAAATaGTGGTTCTGTCAAAGCAAC +
Preference number: 2 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHLAVLK*WFCQSN
Trigger: GTTGCTTTGACAGAACCACCATTTTAAAACAGCTAA...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR-3UTR CCA 90 bp AACCTTCCCTACCCTACTTACTCATGCTCAGAGGAAGTTTTCCAAAATCCCTTTGTTCTAGATAATGGCTaGGCTGATTTATTTGAGGTA +
Preference number: 2 (lower is better)
Translates to: NLPYPTYSCSEEVFQNPFVLDNG*ADLFEV
Trigger: TACCTCAAATAAATCAGCCCAGCCATTATCTAGAAC...AAAGGGATTTTGGAAAACTTCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR CCA 72 bp ATTGCTACAAGCCTCACCACGGAGCTCACAAAAAGTTaGAAGACTAGAGCCCCACTCCTCAGAAAGTCAGCG +
Preference number: 3 (lower is better)
Translates to: IATSLTTELTKS*KTRAPLLRKSA
Trigger: CGCTGACTTTCTGAGGAGTGGGGCTCTAGTCTTCCAACTTTTTGTGAGCTCCGTGGTGAGGCTTGTAGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR TCA 72 bp CGACGTGATGGGTTCCAGCACATTTTATGCATGAAATaGCTCTTGTCTGTAGGGAATGGAATGGAGTACATG +
Preference number: 3 (lower is better)
Translates to: RRDGFQHILCMK*LLSVGNGMEYM
Trigger: CATGTACTCCATTCCATTCCCTACAGACAAGAGTCATTTCATGCATAAAATGTGCTGGAACCCATCACGTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR TCA 72 bp GTGTATATACATGATATCATACATAGAGAGATGAAATaGCCCAGGTTGATTTTAGGAAATTCCCCATTCCCC +
Preference number: 3 (lower is better)
Translates to: VYIHDIIHREMK*PRLILGNSPFP
Trigger: GGGGAATGGGGAATTTCCTAAAATCAACCTGGGTCATTTCATCTCTCTATGTATGATATCATGTATATACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR TCA 72 bp AATTACAAAGTCTTCCAGCTTCTGTGTCTTGCCTACTaGTCACTAACTCAAATCCAGTTCCACATTTTACTT +
Preference number: 3 (lower is better)
Translates to: NYKVFQLLCLAY*SLTQIQFHILL
Trigger: AAGTAAAATGTGGAACTGGATTTGAGTTAGTGATCAGTAGGCAAGACACAGAAGCTGGAAGACTTTGTAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR CCA 72 bp CATTTTATGCATGAAATGACTCTTGTCTGTAGGGAATaGAATGGAGTACATGTGATTATTTCCTTACTTTGG +
Preference number: 3 (lower is better)
Translates to: HFMHEMTLVCRE*NGVHVIISLLW
Trigger: CCAAAGTAAGGAAATAATCACATGTACTCCATTCCATTCCCTACAGACAAGAGTCATTTCATGCATAAAATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGCAGATTTTACATTaGTGCTGCGGCCATCCCCCG +
Preference number: 4 (lower is better)
Translates to: THHTSHHPRTFPTLLTHAQQILH*CCGHPP
Trigger: CGGGGGATGGCCGCAGCATCAATGTAAAATCTGCTG...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCTGGTGAAAAGGGCCTaGGTCTGTGAGGCAAACCCA +
Preference number: 4 (lower is better)
Translates to: THHTSHHPRTFPTLLTHALVKRA*VCEANP
Trigger: TGGGTTTGCCTCACAGACCCAGGCCCTTTTCACCAG...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGACAGCACTGGGCATCCTaGAGGGGTCCTGATGAGAGT +
Preference number: 4 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRQHWAS*RGPDES
Trigger: ACTCTCATCAGGACCCCTCCAGGATGCCCAGTGCTG...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACAAGGGCCTGGGTCTGTaGGGCAAACCCAAAATAGAC +
Preference number: 4 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHKGLGL*GKPKID
Trigger: GTCTATTTTGGGTTTGCCTCACAGACCCAGGCCCTT...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCCCATTGGGAGAGGCTaGGTATCCCTTTCTTGTCTC +
Preference number: 4 (lower is better)
Translates to: THHTSHHPRTFPTLLTHAPIGRG*VSLSCL
Trigger: GAGACAAGAAAGGGATACCCAGCCTCTCCCAATGGG...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGCAAGAGGTGGGCTCTaGGTAGTCAGAGGAGTCCTT +
Preference number: 4 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRARGGL*VVRGVL
Trigger: AAGGACTCCTCTGACTACCCAGAGCCCACCTCTTGC...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTTATAATCTCCAGCACTaGGCATCCTGGAGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: THHTSHHPRTFPTLLTHAYNLQH*ASWRGP
Trigger: AGGACCCCTCCAGGATGCCCAGTGCTGGAGATTATA...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTCCTTTCTTGTCTCTTTaGCCTCTCCAGCCAGGGACA +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPPFLSL*PLQPGT
Trigger: TGTCCCTGGCTGGAGAGGCCAAAGAGACAAGAAAGG...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTAGGTGTACCAGGGTCTaGACTATGGCATGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPRCTRV*TMAWLV
Trigger: CACCAACCATGCCATAGTCCAGACCCTGGTACACCT...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTAATGGCTGTTTTGACTaGGGCCCATGTCTTCCCACA +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPNGCFD*GPCLPT
Trigger: TGTGGGAAGACATGGGCCTCAGTCAAAACAGCCATT...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTCATGAATGGCTGTTTTaGCTGAGGCCCATGTCTTCC +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPHEWLF*LRPMSS
Trigger: GGAAGACATGGGCCTCAGTCAAAACAGCCATTCATG...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACAATCCGGAATTCTGCTaGTGTCACTGCTTCTCCATG +
Preference number: 4 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHNPEFC*CHCFSM
Trigger: CATGGAGAAGCAGTGACAGCAGCAGAATTCCGGATT...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGATTTCCGTTTGCTGGCTaGTCTCACGGATCGAAGAAG +
Preference number: 4 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRFPFAG*SHGSKK
Trigger: CTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAA...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp CGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCTTTGATTTTTCCGTTTaGTGGCTGCTCTCACGGATC +
Preference number: 4 (lower is better)
Translates to: RTTLHTTPEPSLPYLLMLFDFSV*WLLSRI
Trigger: GATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAA...GAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp ACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGAAGCATACCCTTCTGGTaGTATGATCCAGTCCTGCCA +
Preference number: 4 (lower is better)
Translates to: TLHTTPEPSLPYLLMLRGSIPFW*YDPVLP
Trigger: TGGCAGGACTGGATCATAGCACCAGAAGGGTATGCT...TCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCCGTCACAATAAAATaGAGCATACCCTTCTGGTGC +
Preference number: 4 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHPVTIK*SIPFWC
Trigger: GCACCAGAAGGGTATGCTGCATTTTATTGTGACGGG...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTGATTTTTCCGTTTGCTaGCTGCTCTCACGGATCGAA +
Preference number: 4 (lower is better)
Translates to: THHTSHHPRTFPTLLTHADFSVC*LLSRIE
Trigger: TTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATC...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp ACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGATTCTGCTGCTGTCACTaGTTCTCCATGTGGAATCTG +
Preference number: 4 (lower is better)
Translates to: TLHTTPEPSLPYLLMLRGFCCCH*FSMWNL
Trigger: CAGATTCCACATGGAGAAGCAGTGACAGCAGCAGAA...TCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp CCCACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACATAAATCCGGAATTCTaGTGCTGTCACTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PTPQKVSVGWRKTLVTSHINPEF*CCHCFS
Trigger: GGAGAAGCAGTGACAGCAGCAGAATTCCGGATTTAT...GTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTAAGAAGTACCTCGCTTaGCTTGAAGAAGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPKKYLA*LEEGHH
Trigger: ATGGTGGCCTTCTTCAAGGCAAGCGAGGTACTTCTT...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp CGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGTTCGTGCTTCTTaGAGGCTTGTTTTTGTTCAC +
Preference number: 4 (lower is better)
Translates to: RTTLHTTPEPSLPYLLMLRVRAS*RLVFVH
Trigger: GTGAACAAAAACAAGCCTGCAAGAAGCACGAACTCT...GAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGAGGACTATGGCATGGTTaGTGGCATTCATATGGGCAT +
Preference number: 4 (lower is better)
Translates to: TLHTTPEPSLPYLLMLRGGLWHG*WHSYGH
Trigger: ATGCCCATATGAATGCCACCAACCATGCCATAGTCC...TCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGACAAGGCTTGGGAACATaGTCTGGAAACATCAGGTGT +
Preference number: 4 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRQGLGT*SGNIRC
Trigger: ACACCTGATGTTTCCAGACCATGTTCCCAAGCCTTG...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGATCTCCATGTGGAATCTaGGTCAGATCAAACCGAAAC +
Preference number: 4 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRSPCGI*VRSNRN
Trigger: GTTTCGGTTTGATCTGACCCAGATTCCACATGGAGA...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTCACTGCTTCTCCATGTaGAATCTGGGTCAGATCAAA +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPHCFSM*NLGQIK
Trigger: TTTGATCTGACCCAGATTCCACATGGAGAAGCAGTG...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTGGATTAATCACCCAGTaGTTGCTGGTCACAGTGATA +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPGLITQ*LLVTVI
Trigger: TATCACTGTGACCAGCAACCACTGGGTGATTAATCC...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCATATGGGCATTAAGTaGAAAAGAACATTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: THHTSHHPRTFPTLLTHAHMGIK*KRTFPV
Trigger: GACGGGGAATGTTCTTTTCCACTTAATGCCCATATG...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR CAA 72 bp GGGGAGTTGGGAATGGCGCTCCATGAATATTTTCAGTaGATTGCTACAAGCCTCACCACGGAGCTCACAAAA +
Preference number: 4 (lower is better)
Translates to: GELGMALHEYFQ*IATSLTTELTK
Trigger: TTTTGTGAGCTCCGTGGTGAGGCTTGTAGCAATCAACTGAAAATATTCATGGAGCGCCATTCCCAACTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp AACCTTCCCTACCCTACTTACTCATGCTCAGAGGAAGTTTTCCAAAATCCCTTTACCCTTCTGGTGCTATaGTCCAGTCCTGCCATCCCA +
Preference number: 4 (lower is better)
Translates to: NLPYPTYSCSEEVFQNPFTLLVL*SSPAIP
Trigger: TGGGATGGCAGGACTGGATCATAGCACCAGAAGGGT...AAAGGGATTTTGGAAAACTTCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp TATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCTGCTTGTTTCCCTGGTaGAAAGGGCCTGGGTCTGTG +
Preference number: 4 (lower is better)
Translates to: YISLGKNVSIVLNWTHHTCLFPW*KGPGSV
Trigger: CACAGACCCAGGCCCTTTTCACCAGGGAAACAAGCA...GGTGTGGTGGGTCCAGTTTAACACTATGCTAACATTTTTCCCAAGGCTAATATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR TCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTGATTTATTGCGGTTTTaGTTTTTCCGTTTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPDLLRF*FFRLLA
Trigger: AGCCAGCAAACGGAAAAATCAAAACCGCAATAAATC...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTTTGGTGGCATTCATATaGGCATTAAGTGGAAAAGAA +
Preference number: 4 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPLVAFI*ALSGKE
Trigger: TTCTTTTCCACTTAATGCCCATATGAATGCCACCAA...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
3UTR CAA 72 bp AAGCCACAATGTCTGAAAGTTAGTAAGGATGGATTCTaGCTTGAAAGCTACAAGCGGGGAGTTGGGAATGGC +
Preference number: 4 (lower is better)
Translates to: KPQCLKVSKDGF*LESYKRGVGNG
Trigger: GCCATTCCCAACTCCCCGCTTGTAGCTTTCAAGCAAGAATCCATCCTTACTAACTTTCAGACATTGTGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR GCA 90 bp TATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCGCTATGATCCAGTCCTaGCATCCCAGATCTCGGAAA +
Preference number: 4 (lower is better)
Translates to: YISLGKNVSIVLNWTHHTAMIQS*HPRSRK
Trigger: TTTCCGAGATCTGGGATGGCAGGACTGGATCATAGC...GGTGTGGTGGGTCCAGTTTAACACTATGCTAACATTTTTCCCAAGGCTAATATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp AACTGGACCCACCACACCCCAACAAAAGTTAGAATAGGAATCTATTATATAATAGATGCGCATACCCATTaGGAGAGGCTGGGTATCCCT +
Preference number: 4 (lower is better)
Translates to: NWTHHTPTKVRIGIYYIIDAHTH*ERLGIP
Trigger: AGGGATACCCAGCCTCTCCCAATGGGTATGCGCATC...TATTATATAATAGATTCCTATTCTAACTTTTGTTGGGGTGTGGTGGGTCCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp AACTGGACCCACCACACCCCAACAAAAGTTAGAATAGGAATCTATTATATAATATGGTATCATGTAGGCTaGCAAGAGGTGGGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: NWTHHTPTKVRIGIYYIIWYHVG*QEVGSG
Trigger: CCCAGAGCCCACCTCTTGCCAGCCTACATGATACCA...TATTATATAATAGATTCCTATTCTAACTTTTGTTGGGGTGTGGTGGGTCCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp AACCTTCCCTACCCTACTTACTCATGCTCAGAGGAAGTTTTCCAAAATCCCTTTGCCCAAATTGTTCTGTaGATTAATCACCCAGTGGTT +
Preference number: 4 (lower is better)
Translates to: NLPYPTYSCSEEVFQNPFAQIVL*INHPVV
Trigger: AACCACTGGGTGATTAATCCACAGAACAATTTGGGC...AAAGGGATTTTGGAAAACTTCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp TATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCCATCATTCAGAAAGTTaGTATCATGTAGGCTGGCAA +
Preference number: 4 (lower is better)
Translates to: YISLGKNVSIVLNWTHHTHHSES*YHVGWQ
Trigger: TTGCCAGCCTACATGATACCAACTTTCTGAATGATG...GGTGTGGTGGGTCCAGTTTAACACTATGCTAACATTTTTCCCAAGGCTAATATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp TATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCCTTGTTTTTGTTCACTaGTATTATAATCTCCAGCAC +
Preference number: 4 (lower is better)
Translates to: YISLGKNVSIVLNWTHHTLVFVH*YYNLQH
Trigger: GTGCTGGAGATTATAATACCAGTGAACAAAAACAAG...GGTGTGGTGGGTCCAGTTTAACACTATGCTAACATTTTTCCCAAGGCTAATATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CCA 90 bp AACTGGACCCACCACACCCCAACAAAAGTTAGAATAGGAATCTATTATATAATAAATACAGGACCGAGATaGCATTTAGTTTGGTTGGAG +
Preference number: 4 (lower is better)
Translates to: NWTHHTPTKVRIGIYYIINTGPR*HLVWLE
Trigger: CTCCAACCAAACTAAATGCCATCTCGGTCCTGTATT...TATTATATAATAGATTCCTATTCTAACTTTTGTTGGGGTGTGGTGGGTCCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 90 bp GCAAGAGGTGGGCTCTGGGTAGTCAGAGGAGTCCTTGGTGGTAAGTaGAGACGATGCGCATACCCATTGGGAGAGGCTGGGTATCCCTTT +
Preference number: 5 (lower is better)
Translates to: ARGGLWVVRGVLGGK*RRCAYPLGEAGYPF
Trigger: AAAGGGATACCCAGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGACTACCCAGAGCCCACCTCTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 90 bp GCGCATACCCATTGGGAGAGGCTGGGTATCCCTTTCTTGTCTCTTTaGCCTCTCCAGCCAGGGACACCCTCACCAAATACTCCGACTCCT +
Preference number: 5 (lower is better)
Translates to: AHTHWERLGIPFLSL*PLQPGTPSPNTPTP
Trigger: AGGAGTCGGAGTATTTGGTGAGGGTGTCCCTGGCTGGAGAGGCCAAAGAGACAAGAAAGGGATACCCAGCCTCTCCCAATGGGTATGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 90 bp GGGCTCTGGGTAGTCAGAGGAGTCCTTGGTGGTAAGTGCAGACGATaGGCATACCCATTGGGAGAGGCTGGGTATCCCTTTCTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: GLWVVRGVLGGKCRR*AYPLGEAGYPFLVS
Trigger: AGAGACAAGAAAGGGATACCCAGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGACTACCCAGAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp ACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGACGATGCGCATACCCATaGGGAGAGGCTGGGTATCCC +
Preference number: 5 (lower is better)
Translates to: TLHTTPEPSLPYLLMLRGRCAYP*GEAGYP
Trigger: GGGATACCCAGCCTCTCCCAATGGGTATGCGCATCG...TCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 90 bp TCAGAGGAGTCCTTGGTGGTAAGTGCAGACGATGCGCATACCCATTaGGAGAGGCTGGGTATCCCTTTCTTGTCTCTTTGGCCTCTCCAG +
Preference number: 5 (lower is better)
Translates to: SEESLVVSADDAHTH*ERLGIPFLSLWPLQ
Trigger: CTGGAGAGGCCAAAGAGACAAGAAAGGGATACCCAGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp ACGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCTCCCAAGCCTCCTTTaGCATAACCCACTTGAACCC +
Preference number: 5 (lower is better)
Translates to: THHTSHHPRTFPTLLTHALPSLL*HNPLEP
Trigger: GGGTTCAAGTGGGTTATGCAAAAGGAGGCTTGGGAG...AGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp ACTCCTCAGAAAGTCAGCGTGGGCTGGAGAAAGACCTTAGTAACCAGTCACCCTCCAGCAGATTTTACATaGATGCTGCGGCCATCCCCC +
Preference number: 5 (lower is better)
Translates to: TPQKVSVGWRKTLVTSHPPADFT*MLRPSP
Trigger: GGGGGATGGCCGCAGCATCAATGTAAAATCTGCTGG...AGGGTGACTGGTTACTAAGGTCTTTCTCCAGCCCACGCTGACTTTCTGAGGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 90 bp TCATTCAGAAAGTTGGTATCATGTAGGCTGGCAAGAGGTGGGCTCTaGGTAGTCAGAGGAGTCCTTGGTGGTAAGTGCAGACGATGCGCA +
Preference number: 5 (lower is better)
Translates to: SFRKLVSCRLARGGL*VVRGVLGGKCRRCA
Trigger: TGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGACTACCCAGAGCCCACCTCTTGCCAGCCTACATGATACCAACTTTCTGAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp CGCACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCGCATCATTCAGAAAGTaGGTATCATGTAGGCTGGCA +
Preference number: 5 (lower is better)
Translates to: RTTLHTTPEPSLPYLLMLASFRK*VSCRLA
Trigger: TGCCAGCCTACATGATACCAACTTTCTGAATGATGC...GAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 90 bp ATAAATAAAACTGGAGTGAACGTGATTGTCTCCCAAGCCTCCTTTTaGATAACCCACTTGAACCCAGCCGCTCCAGAGGAAGCCCACAAT +
Preference number: 5 (lower is better)
Translates to: INKTGVNVIVSQASF*ITHLNPAAPEEAHN
Trigger: ATTGTGGGCTTCCTCTGGAGCGGCTGGGTTCAAGTGGGTTATGCAAAAGGAGGCTTGGGAGACAATCACGTTCACTCCAGTTTTATTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp TATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCCCCTTTCTTGTCTCTTaGGCCTCTCCAGCCAGGGAC +
Preference number: 5 (lower is better)
Translates to: YISLGKNVSIVLNWTHHTPFLVS*ASPARD
Trigger: GTCCCTGGCTGGAGAGGCCAAAGAGACAAGAAAGGG...GGTGTGGTGGGTCCAGTTTAACACTATGCTAACATTTTTCCCAAGGCTAATATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp ACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGAAGCTGTAAGCCCAAATaGTTCTGTGGATTAATCACC +
Preference number: 5 (lower is better)
Translates to: TLHTTPEPSLPYLLMLRGSCKPK*FCGLIT
Trigger: GGTGATTAATCCACAGAACAATTTGGGCTTACAGCT...TCCTCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGAGGATTTATTGCGGTTTaGATTTTTCCGTTTGCTGGC +
Preference number: 5 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRGFIAV*IFPFAG
Trigger: GCCAGCAAACGGAAAAATCAAAACCGCAATAAATCC...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 90 bp ATGAGAGTTGGATTTATTGCGGTTTTGATTTTTCCGTTTGCTGGCTaGTCTCACGGATCGAAGAAGTACCTCGCTTGCCTTGAAGAAGGC +
Preference number: 5 (lower is better)
Translates to: MRVGFIAVLIFPFAG*SHGSKKYLACLEEG
Trigger: GCCTTCTTCAAGGCAAGCGAGGTACTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAAACCGCAATAAATCCAACTCTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 90 bp AACTCACATAGAGTTCGTGCTTCTTGCAGGCTTGTTTTTGTTCACTaGTATTATAATCTCCAGCACTGGGCATCCTGGAGGGGTCCTGAT +
Preference number: 5 (lower is better)
Translates to: NSHRVRASCRLVFVH*YYNLQHWASWRGPD
Trigger: ATCAGGACCCCTCCAGGATGCCCAGTGCTGGAGATTATAATACCAGTGAACAAAAACAAGCCTGCAAGAAGCACGAACTCTATGTGAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp ACCACACTTCACACCACCCCAGAACCTTCCCTACCCTACTTACTCATGCTCAGATCTCTTTCAACTAAGTaGACAAAGCTCATGACCATG +
Preference number: 5 (lower is better)
Translates to: TTLHTTPEPSLPYLLMLRSLSTK*TKLMTM
Trigger: CATGGTCATGAGCTTTGTCAACTTAGTTGAAAGAGA...TCTGAGCATGAGTAAGTAGGGTAGGGAAGGTTCTGGGGTGGTGTGAAGTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp AACTGGACCCACCACACCCCAACAAAAGTTAGAATAGGAATCTATTATATAATATTAATCACCCAGTGGTaGCTGGTCACAGTGATATCA +
Preference number: 5 (lower is better)
Translates to: NWTHHTPTKVRIGIYYIILITQW*LVTVIS
Trigger: TGATATCACTGTGACCAGCAACCACTGGGTGATTAA...TATTATATAATAGATTCCTATTCTAACTTTTGTTGGGGTGTGGTGGGTCCAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS-3UTR CAA 90 bp TATATTAGCCTTGGGAAAAATGTTAGCATAGTGTTAAACTGGACCCACCACACCCTTGCAGGCTTGTTTTaGTTCACTGGTATTATAATC +
Preference number: 5 (lower is better)
Translates to: YISLGKNVSIVLNWTHHTLAGLF*FTGIII
Trigger: GATTATAATACCAGTGAACAAAAACAAGCCTGCAAG...GGTGTGGTGGGTCCAGTTTAACACTATGCTAACATTTTTCCCAAGGCTAATATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 72 bp GGGCTCTGGGTAGTCAGAGGAGTCCTTGGTGGTAAGTaGAGACGATGCGCATACCCATTGGGAGAGGCTGGG +
Preference number: 6 (lower is better)
Translates to: GLWVVRGVLGGK*RRCAYPLGEAG
Trigger: CCCAGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGACTACCCAGAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CAA 90 bp TGCGCATACCCATTGGGAGAGGCTGGGTATCCCTTTCTTGTCTCTTaGGCCTCTCCAGCCAGGGACACCCTCACCAAATACTCCGACTCC +
Preference number: 6 (lower is better)
Translates to: CAYPLGEAGYPFLVS*ASPARDTLTKYSDS
Trigger: GGAGTCGGAGTATTTGGTGAGGGTGTCCCTGGCTGGAGAGGCCAAAGAGACAAGAAAGGGATACCCAGCCTCTCCCAATGGGTATGCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CAA 90 bp GTCAGAGGAGTCCTTGGTGGTAAGTGCAGACGATGCGCATACCCATaGGGAGAGGCTGGGTATCCCTTTCTTGTCTCTTTGGCCTCTCCA +
Preference number: 6 (lower is better)
Translates to: VRGVLGGKCRRCAYP*GEAGYPFLVSLASP
Trigger: TGGAGAGGCCAAAGAGACAAGAAAGGGATACCCAGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 72 bp GTAGTCAGAGGAGTCCTTGGTGGTAAGTGCAGACGATaGGCATACCCATTGGGAGAGGCTGGGTATCCCTTT +
Preference number: 6 (lower is better)
Translates to: VVRGVLGGKCRR*AYPLGEAGYPF
Trigger: AAAGGGATACCCAGCCTCTCCCAATGGGTATGCGCATCGTCTGCACTTACCACCAAGGACTCCTCTGACTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp TTTGGTTGGAGCGCAGCAAGGCTTGGGAACATGGTCTaGAAACATCAGGTGTACCAGGGTCTGGACTATGGC +
Preference number: 6 (lower is better)
Translates to: FGWSAARLGNMV*KHQVYQGLDYG
Trigger: GCCATAGTCCAGACCCTGGTACACCTGATGTTTCCAGACCATGTTCCCAAGCCTTGCTGCGCTCCAACCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CAA 72 bp GTGATTGTCTCCCAAGCCTCCTTTTGCATAACCCACTaGAACCCAGCCGCTCCAGAGGAAGCCCACAATACC +
Preference number: 6 (lower is better)
Translates to: VIVSQASFCITH*NPAAPEEAHNT
Trigger: GGTATTGTGGGCTTCCTCTGGAGCGGCTGGGTTCAAGTGGGTTATGCAAAAGGAGGCTTGGGAGACAATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp AAGTTGGTATCATGTAGGCTGGCAAGAGGTGGGCTCTaGGTAGTCAGAGGAGTCCTTGGTGGTAAGTGCAGA +
Preference number: 6 (lower is better)
Translates to: KLVSCRLARGGL*VVRGVLGGKCR
Trigger: TCTGCACTTACCACCAAGGACTCCTCTGACTACCCAGAGCCCACCTCTTGCCAGCCTACATGATACCAACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp TTTAGTTTGGTTGGAGCGCAGCAAGGCTTGGGAACATaGTCTGGAAACATCAGGTGTACCAGGGTCTGGACT +
Preference number: 6 (lower is better)
Translates to: FSLVGAQQGLGT*SGNIRCTRVWT
Trigger: AGTCCAGACCCTGGTACACCTGATGTTTCCAGACCATGTTCCCAAGCCTTGCTGCGCTCCAACCAAACTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CAA 90 bp GGGCATCCTGGAGGGGTCCTGATGAGAGTTGGATTTATTGCGGTTTaGATTTTTCCGTTTGCTGGCTGCTCTCACGGATCGAAGAAGTAC +
Preference number: 6 (lower is better)
Translates to: GHPGGVLMRVGFIAV*IFPFAGCSHGSKKY
Trigger: GTACTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAAACCGCAATAAATCCAACTCTCATCAGGACCCCTCCAGGATGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS TCA 72 bp GATGCTTGTTTCCCTGGTGAAAAGGGCCTGGGTCTGTaGGGCAAACCCAAAATAGACAGAATTTCCCTCTGT +
Preference number: 6 (lower is better)
Translates to: DACFPGEKGLGL*GKPKIDRISLC
Trigger: ACAGAGGGAAATTCTGTCTATTTTGGGTTTGCCTCACAGACCCAGGCCCTTTTCACCAGGGAAACAAGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 72 bp GGATTTATTGCGGTTTTGATTTTTCCGTTTGCTGGCTaGTCTCACGGATCGAAGAAGTACCTCGCTTGCCTT +
Preference number: 6 (lower is better)
Translates to: GFIAVLIFPFAG*SHGSKKYLACL
Trigger: AAGGCAAGCGAGGTACTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAAACCGCAATAAATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS GCA 72 bp GAGAGTTGGATTTATTGCGGTTTTGATTTTTCCGTTTaGTGGCTGCTCTCACGGATCGAAGAAGTACCTCGC +
Preference number: 6 (lower is better)
Translates to: ESWIYCGFDFSV*WLLSRIEEVPR
Trigger: GCGAGGTACTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAAACCGCAATAAATCCAACTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp AGAGTTCGTGCTTCTTGCAGGCTTGTTTTTGTTCACTaGTATTATAATCTCCAGCACTGGGCATCCTGGAGG +
Preference number: 6 (lower is better)
Translates to: RVRASCRLVFVH*YYNLQHWASWR
Trigger: CCTCCAGGATGCCCAGTGCTGGAGATTATAATACCAGTGAACAAAAACAAGCCTGCAAGAAGCACGAACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp AGTTGGATTTATTGCGGTTTTGATTTTTCCGTTTGCTaGCTGCTCTCACGGATCGAAGAAGTACCTCGCTTG +
Preference number: 6 (lower is better)
Translates to: SWIYCGFDFSVC*LLSRIEEVPRL
Trigger: CAAGCGAGGTACTTCTTCGATCCGTGAGAGCAGCCAGCAAACGGAAAAATCAAAACCGCAATAAATCCAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp CTTGTTTTTGTTCACTGGTATTATAATCTCCAGCACTaGGCATCCTGGAGGGGTCCTGATGAGAGTTGGATT +
Preference number: 6 (lower is better)
Translates to: LVFVHWYYNLQH*ASWRGPDESWI
Trigger: AATCCAACTCTCATCAGGACCCCTCCAGGATGCCCAGTGCTGGAGATTATAATACCAGTGAACAAAAACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CCA 72 bp TGTAAGCCCAAATTGTTCTGTGGATTAATCACCCAGTaGTTGCTGGTCACAGTGATATCAAAGACAAGCCAG +
Preference number: 6 (lower is better)
Translates to: CKPKLFCGLITQ*LLVTVISKTSQ
Trigger: CTGGCTTGTCTTTGATATCACTGTGACCAGCAACCACTGGGTGATTAATCCACAGAACAATTTGGGCTTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8
CDS CAA 72 bp ACTCACATAGAGTTCGTGCTTCTTGCAGGCTTGTTTTaGTTCACTGGTATTATAATCTCCAGCACTGGGCAT +
Preference number: 6 (lower is better)
Translates to: THIEFVLLAGLF*FTGIIISSTGH
Trigger: ATGCCCAGTGCTGGAGATTATAATACCAGTGAACAAAAACAAGCCTGCAAGAAGCACGAACTCTATGTGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000012281.8