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Pregenerated sensors for BMP2K (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034663

Ensembl transcript IDs: ENSMUST00000035635.10, ENSMUST00000112974.6

Found 293 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAGGCTGGAGGTGTGGCTCAGCCCTAAAGCGCTTGCCTAGCGTGTaGGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACA +
Preference number: 1 (lower is better)
Translates to: PGWRCGSALKRLPSV*EALGSVPSTAKERT
Trigger: TGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCACACGCTAGGCAAGCGCTTTAGGGCTGAGCCACACCTCCAGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 90 bp AACAGGGTAGCACTGACTGCAAAGTGCACACATCTGAGAGCCAAGTaGTTTCCTAACTGCCCAGGACACACAGCCCAGGGGAGGAGCACT +
Preference number: 1 (lower is better)
Translates to: NRVALTAKCTHLRAK*FPNCPGHTAQGRST
Trigger: AGTGCTCCTCCCCTGGGCTGTGTGTCCTGGGCAGTTAGGAAATCACTTGGCTCTCAGATGTGTGCACTTTGCAGTCAGTGCTACCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR GCA 90 bp TTTCTGTCACCACTCAGTGAAGGACACAACAAGCCATCACCATCGTaGAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACC +
Preference number: 1 (lower is better)
Translates to: FLSPLSEGHNKPSPS*SPRFLWACSRVSQT
Trigger: GGTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGGCTTGTTGTGTCCTTCACTGAGTGGTGACAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR TCA 90 bp TCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTaGGTTTGCAGAGGAGGAGACAAGAAATATAAAAGGACCATGCCT +
Preference number: 1 (lower is better)
Translates to: SAWHGVACSCPHYPH*VCRGGDKKYKRTMP
Trigger: AGGCATGGTCCTTTTATATTTCTTGTCTCCTCCTCTGCAAACTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR GCA 90 bp GCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTaGTGTGCTGTACTAGATCCATTTCTTCAATGCCCTAAAAGATTC +
Preference number: 1 (lower is better)
Translates to: AWSRPFLQLHTEQPL*CAVLDPFLQCPKRF
Trigger: GAATCTTTTAGGGCATTGAAGAAATGGATCTAGTACAGCACAGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 90 bp AGTAGCAAAAGCCCTTGGAACTTTCGATTTAGGCCTCCTCCTGCTTaGAGAAGGCATCCACTTACTACCCTGTACAAACAATTCCATTTG +
Preference number: 1 (lower is better)
Translates to: SSKSPWNFRFRPPPA*RRHPLTTLYKQFHL
Trigger: CAAATGGAATTGTTTGTACAGGGTAGTAAGTGGATGCCTTCTTCAAGCAGGAGGAGGCCTAAATCGAAAGTTCCAAGGGCTTTTGCTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 90 bp GAGTGTGCAGGAAAGAGCTACAGAGCCATTAGTAAGGCAAGAGACTaGCAGTGTCTTCCCTACTTGAGCATTAACCTTCCATGTTTTGAA +
Preference number: 1 (lower is better)
Translates to: ECAGKSYRAISKARD*QCLPYLSINLPCFE
Trigger: TTCAAAACATGGAAGGTTAATGCTCAAGTAGGGAAGACACTGTCAGTCTCTTGCCTTACTAATGGCTCTGTAGCTCTTTCCTGCACACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR GCA 90 bp CAAAAACATGGAAGTGTAATCAAAGAAAGTGCACTTAAAGCTGTTTaGCAGCAATTAAAAGGGATCTTCCAGGCTGGAGGTGTGGCTCAG +
Preference number: 1 (lower is better)
Translates to: QKHGSVIKESALKAV*QQLKGIFQAGGVAQ
Trigger: CTGAGCCACACCTCCAGCCTGGAAGATCCCTTTTAATTGCTGGCAAACAGCTTTAAGTGCACTTTCTTTGATTACACTTCCATGTTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 90 bp CGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATaGCCTTTCAGTCACAAAAAGAACATAGTAAGGAAATCAGTTCTC +
Preference number: 1 (lower is better)
Translates to: RKRKNKWLLLLLLIG*PFSHKKNIVRKSVL
Trigger: GAGAACTGATTTCCTTACTATGTTCTTTTTGTGACTGAAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CCA 90 bp TTGTCAGTGAATCACCTTAAAATATTCAGTGCATTGAAAGGCAAGTaGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTT +
Preference number: 1 (lower is better)
Translates to: LSVNHLKIFSALKGK*NSDFIFTTQKTTSV
Trigger: AACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGCCTTTCAATGCACTGAATATTTTAAGGTGATTCACTGACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACACTGTCGGAGCACCCTaGAGGAACTGCAGCCCAGGA +
Preference number: 2 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHTVGAP*RNCSPG
Trigger: TCCTGGGCTGCAGTTCCTTCAGGGTGCTCCGACAGT...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CAA 90 bp AAAAGGGATCTTCCAGGCTGGAGGTGTGGCTCAGCCCTAAAGCGCTaGCCTAGCGTGTGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCA +
Preference number: 2 (lower is better)
Translates to: KRDLPGWRCGSALKR*PSVCEALGSVPSTA
Trigger: TGCGGTGCTGGGAACTGAACCCAGGGCCTCGCACACGCTAGGCAAGCGCTTTAGGGCTGAGCCACACCTCCAGCCTGGAAGATCCCTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACCAGCCCGGTTCTGCGTaGCATGGTGTGGCCTGCTCC +
Preference number: 2 (lower is better)
Translates to: CEALGSVPSTAKERTSGYQPGSA*HGVACS
Trigger: GGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACGTACCCAGGCCTGGATaGCCGAATGGAGAGGAGCCA +
Preference number: 2 (lower is better)
Translates to: CEALGSVPSTAKERTSGYVPRPG*PNGEEP
Trigger: TGGCTCCTCTCCATTCGGCCATCCAGGCCTGGGTAC...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp AGGTGCAAACATAGTCTCTGCCTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGCCACACTACCCCCACTaGGTTTGCAGAGGAGGAGAC +
Preference number: 2 (lower is better)
Translates to: RCKHSLCLWHRTVSGAARPHYPH*VCRGGD
Trigger: GTCTCCTCCTCTGCAAACTCAGTGGGGGTAGTGTGG...CCGGGCTGCACCACTTACTGTCCTGTGCCAAAGGCAGAGACTATGTTTGCACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGAAGGACTCCCCAGTGCTaGATGAGGGTGGGGCTGGCA +
Preference number: 2 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRRTPQC*MRVGLA
Trigger: TGCCAGCCCCACCCTCATCCAGCACTGGGGAGTCCT...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGCTGCGTGGCATGGTGTaGCCTGCTCCTGTCCACACT +
Preference number: 2 (lower is better)
Translates to: MERSQSGHHLSIFHQEDELRGMV*PAPVHT
Trigger: AGTGTGGACAGGAGCAGGCCACACCATGCCACGCAG...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACATCATATACATGTTTTaGGCCATACACCATAGAAGG +
Preference number: 2 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHIIYMF*AIHHRR
Trigger: CCTTCTATGGTGTATGGCTCAAAACATGTATATGAT...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGGGGCCAGCTGTTGAGTaGGTGTTGGGTGCTGGTAAG +
Preference number: 2 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEGPAVE*VLGAGK
Trigger: CTTACCAGCACCCAACACTCACTCAACAGCTGGCCC...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CAA 90 bp GGGCACACCCAAATGACATTCTTTAAGCCAGAACTGGGCCAGCTGTaGAGTGAGTGTTGGGTGCTGGTAAGTGGGGGAGCCAAGTTCTTG +
Preference number: 2 (lower is better)
Translates to: GHTQMTFFKPELGQL*SECWVLVSGGAKFL
Trigger: CAAGAACTTGGCTCCCCCACTTACCAGCACCCAACACTCACTCAACAGCTGGCCCAGTTCTGGCTTAAAGAATGTCATTTGGGTGTGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp CCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGAGGTGACATGTGATATCTaGAGTGATAAGCTTTCTTGT +
Preference number: 2 (lower is better)
Translates to: PVLRGMVWPAPVHTTPTEVTCDI*SDKLSC
Trigger: ACAAGAAAGCTTATCACTTCAGATATCACATGTCAC...CTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACAAAAGGACCATGCCTTaGTTATGTATTTTGCTTCTT +
Preference number: 2 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHKRTMP*LCILLL
Trigger: AAGAAGCAAAATACATAACCAAGGCATGGTCCTTTT...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACTCTGGGTTCCTCACGTaGCTTCCCTTTGATGTTCAA +
Preference number: 2 (lower is better)
Translates to: CEALGSVPSTAKERTSGYSGFLT*LPFDVQ
Trigger: TTGAACATCAAAGGGAAGTCACGTGAGGAACCCAGA...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGGGAGTCTCCTCAGCTTaGGAAAATGCCTCTAACAGC +
Preference number: 2 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEGVSSA*ENASNS
Trigger: GCTGTTAGAGGCATTTTCTCAAGCTGAGGAGACTCC...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTGGTAAAGCTTCTAGCTaGCAACTCTGGGTTCCTCAC +
Preference number: 2 (lower is better)
Translates to: TLLGADLFSSYILSNLCAGKASS*QLWVPH
Trigger: GTGAGGAACCCAGAGTTGTCAGCTAGAAGCTTTACC...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGGCTGTTTCCTCATGGTaGAAGCATTCATTCAGCCCC +
Preference number: 2 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEAVSSW*KHSFSP
Trigger: GGGGCTGAATGAATGCTTCCACCATGAGGAAACAGC...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp GCTCAAGGGTGTCTCAGACCCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCAGTGTCTTCCCTACTTaGGCATTAACCTTCCATGTT +
Preference number: 2 (lower is better)
Translates to: AQGCLRPTLSRTECAGKSSVFPT*ALTFHV
Trigger: AACATGGAAGGTTAATGCTCAAGTAGGGAAGACACT...GCTCTTTCCTGCACACTCAGTACGAGATAGTGTGGGTCTGAGACACCCTTGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR-3UTR TCA 90 bp AACAAAGCAGCCCCTTTCTGTCACCACTCAGTGAAGGACACAACAAGCCATCACAGTAAGGCAAGAGACTaGCAGTGTCTTCCCTACTTG +
Preference number: 2 (lower is better)
Translates to: NKAAPFCHHSVKDTTSHHSKARD*QCLPYL
Trigger: CAAGTAGGGAAGACACTGTCAGTCTCTTGCCTTACT...GTGATGGCTTGTTGTGTCCTTCACTGAGTGGTGACAGAAAGGGGCTGCTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR-3UTR CCA 90 bp ATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACGTATATGAAAGAAAGTaGCCTGTATTTTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: ITIVQPTLSLGMLKGVSDVYERK*PVFFPQ
Trigger: TTGAGGGAAAAATACAGGCCACTTTCTTTCATATAC...GTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR-3UTR TCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGAGGCAAGTGGAACTCTaGTTTCATATTCACAACTCA +
Preference number: 2 (lower is better)
Translates to: MERSQSGHHLSIFHQEDERQVEL*FHIHNS
Trigger: TGAGTTGTGAATATGAAATCAGAGTTCCACTTGCCT...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTGCCTGGATGGCCGAATaGAGAGGAGCCAGAGTGGGC +
Preference number: 2 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFAWMAE*RGARVG
Trigger: GCCCACTCTGGCTCCTCTCCATTCGGCCATCCAGGC...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CAA 90 bp CAGCTTGAGAAAATGCCTCTAACAGCAATGCAAAGGAGCTACCCATaGGACCTCCAATTAAATCATCTGTCCAATGAGCGGGTTCCAAGA +
Preference number: 2 (lower is better)
Translates to: QLEKMPLTAMQRSYP*DLQLNHLSNERVPR
Trigger: TCTTGGAACCCGCTCATTGGACAGATGATTTAATTGGAGGTCCAATGGGTAGCTCCTTTGCATTGCTGTTAGAGGCATTTTCTCAAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp GGTGTCTCAGACCCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCTACAGAGCAGCTTAACAGTATATaGAAGAAAGTGGCCTGTATT +
Preference number: 2 (lower is better)
Translates to: GVSDPHYLVLSVQERATEQLNSI*KKVACI
Trigger: AATACAGGCCACTTTCTTTCATATACTGTTAAGCTG...CTCTGTAGCTCTTTCCTGCACACTCAGTACGAGATAGTGTGGGTCTGAGACACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR-3UTR GCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTTGGCATGGTGTGGCCTaGTCCTGTCCACACTACCCC +
Preference number: 2 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFWHGVA*SCPHYP
Trigger: GGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCA...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCATCCACTGAGGGTCTaGCTGTCCATGCAGAGTCTG +
Preference number: 2 (lower is better)
Translates to: PQKKEQVATTPSINRMTFHPLRV*LSMQSL
Trigger: CAGACTCTGCATGGACAGCCAGACCCTCAGTGGATG...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGCACGTGACTTCCCTTTaGTGTTCAAGTCTAACGGGT +
Preference number: 2 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRHVTSL*CSSLTG
Trigger: ACCCGTTAGACTTGAACATCAAAGGGAAGTCACGTG...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTAGCCCACGCTTTCTCTaGGCATGCTCAAGGGTGTCT +
Preference number: 2 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICSPRFL*ACSRVS
Trigger: AGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCT...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR-3UTR GCA 90 bp CAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCAGACTGAGCAACCTCTGTaGTGTGCTGTACTAGATCCA +
Preference number: 2 (lower is better)
Translates to: QKKEQVATTPSINRMTFQTEQPL*CAVLDP
Trigger: TGGATCTAGTACAGCACAGCACAGAGGTTGCTCAGT...CTGAAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CAA 90 bp CTGGAGGGGTTGTTGTCAGTGAATCACCTTAAAATATTCAGTGCATaGAAAGGCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAG +
Preference number: 2 (lower is better)
Translates to: LEGLLSVNHLKIFSA*KGKWNSDFIFTTQK
Trigger: CTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGCCTTTCAATGCACTGAATATTTTAAGGTGATTCACTGACAACAACCCCTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR GCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTGATCCATTTCTTCAATaGCCTAAAAGATTCTCTGGC +
Preference number: 2 (lower is better)
Translates to: PQKKEQVATTPSINRMTFDPFLQ*PKRFSG
Trigger: GCCAGAGAATCTTTTAGGGCATTGAAGAAATGGATC...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGAAACATTTTAAGCTGTaGCAGAGTTGTTTCCTAAGA +
Preference number: 2 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRKHFKL*QSCFLR
Trigger: TCTTAGGAAACAACTCTGCCACAGCTTAAAATGTTT...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR GCA 90 bp CAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCAGTTCCCAACAGTCATTTaGTATTCTCTCAGTAGATAC +
Preference number: 2 (lower is better)
Translates to: QKKEQVATTPSINRMTFQFPTVI*YSLSRY
Trigger: GTATCTACTGAGAGAATAGCAAATGACTGTTGGGAA...CTGAAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR TCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTAATAGCAATAGCTGTTaGCCTAGAAACTTCAAATGC +
Preference number: 2 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFNSNSC*PRNFKC
Trigger: GCATTTGAAGTTTCTAGGTCAACAGCTATTGCTATT...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CCA 72 bp AGGACAGTAAGTGGTGCAGCCCGGTTCTGCGTGGCATaGTGTGGCCTGCTCCTGTCCACACTACCCCCACTG +
Preference number: 3 (lower is better)
Translates to: RTVSGAARFCVA*CGLLLSTLPPL
Trigger: CAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTGCACCACTTACTGTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 72 bp GCTGTCCATGCAGAGTCTGTCACTGTCGGAGCACCCTaGAGGAACTGCAGCCCAGGACTCCCCAGTGCTGGA +
Preference number: 3 (lower is better)
Translates to: AVHAESVTVGAP*RNCSPGLPSAG
Trigger: TCCAGCACTGGGGAGTCCTGGGCTGCAGTTCCTTCAGGGTGCTCCGACAGTGACAGACTCTGCATGGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR GCA 72 bp AGCACCCTGAAGGAACTGCAGCCCAGGACTCCCCAGTaGTGGATGAGGGTGGGGCTGGCAGAAAGTAGGTCA +
Preference number: 3 (lower is better)
Translates to: STLKELQPRTPQ*WMRVGLAESRS
Trigger: TGACCTACTTTCTGCCAGCCCCACCCTCATCCAGCACTGGGGAGTCCTGGGCTGCAGTTCCTTCAGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR GCA 72 bp CTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGTTCTaGGTGGCATGGTGTGGCCTGCTCCTGTCCACACTA +
Preference number: 3 (lower is better)
Translates to: LWHRTVSGAARF*VAWCGLLLSTL
Trigger: TAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTGCACCACTTACTGTCCTGTGCCAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CCA 72 bp AGTAAGTGGTGCAGCCCGGTTCTGCGTGGCATGGTGTaGCCTGCTCCTGTCCACACTACCCCCACTGAGTTT +
Preference number: 3 (lower is better)
Translates to: SKWCSPVLRGMV*PAPVHTTPTEF
Trigger: AAACTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTGCACCACTTACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR GCA 72 bp CCATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATaGTCAAGGGTGTCTCAGACCCACACTATCTCGTAC +
Preference number: 3 (lower is better)
Translates to: PSPSCSPRFLWA*SRVSQTHTISY
Trigger: GTACGAGATAGTGTGGGTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR GCA 72 bp CCACTCAGTGAAGGACACAACAAGCCATCACCATCGTaGAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTG +
Preference number: 3 (lower is better)
Translates to: PLSEGHNKPSPS*SPRFLWACSRV
Trigger: CACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGGCTTGTTGTGTCCTTCACTGAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR TCA 72 bp AAGCTCCTAGTCCCACCACCCAGTTCTTCCATCCACTaGGGGTCTGGCTGTCCATGCAGAGTCTGTCACTGT +
Preference number: 3 (lower is better)
Translates to: KLLVPPPSSSIH*GSGCPCRVCHC
Trigger: ACAGTGACAGACTCTGCATGGACAGCCAGACCCTCAGTGGATGGAAGAACTGGGTGGTGGGACTAGGAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CCA 72 bp AACAAGCCATCACCATCGTGCAGCCCACGCTTTCTCTaGGCATGCTCAAGGGTGTCTCAGACCCACACTATC +
Preference number: 3 (lower is better)
Translates to: NKPSPSCSPRFL*ACSRVSQTHTI
Trigger: GATAGTGTGGGTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGGCTTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR CCA 72 bp AGCTGTTTGCCAGCAATTAAAAGGGATCTTCCAGGCTaGAGGTGTGGCTCAGCCCTAAAGCGCTTGCCTAGC +
Preference number: 3 (lower is better)
Translates to: SCLPAIKRDLPG*RCGSALKRLPS
Trigger: GCTAGGCAAGCGCTTTAGGGCTGAGCCACACCTCCAGCCTGGAAGATCCCTTTTAATTGCTGGCAAACAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CAA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGACTACCCCCACTGAGTTaGCAGAGGAGGAGACAAGAA +
Preference number: 3 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRLPPLS*QRRRQE
Trigger: TTCTTGTCTCCTCCTCTGCAAACTCAGTGGGGGTAG...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 72 bp CATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTaGGTTTGCAGAGGAGGAGACAAGAAATATAAAAGG +
Preference number: 3 (lower is better)
Translates to: HGVACSCPHYPH*VCRGGDKKYKR
Trigger: CCTTTTATATTTCTTGTCTCCTCCTCTGCAAACTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CAA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTAAGCTGGAGGGGTTGTaGTCAGTGAATCACCTTAAA +
Preference number: 3 (lower is better)
Translates to: TLLGADLFSSYILSNLCAKLEGL*SVNHLK
Trigger: TTTAAGGTGATTCACTGACAACAACCCCTCCAGCTT...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR GCA 72 bp GAGGAGTCAGTTCCTGTTAAACAGGGTAGCACTGACTaGAAAGTGCACACATCTGAGAGCCAAGTGATTTCC +
Preference number: 3 (lower is better)
Translates to: EESVPVKQGSTD*KVHTSESQVIS
Trigger: GGAAATCACTTGGCTCTCAGATGTGTGCACTTTGCAGTCAGTGCTACCCTGTTTAACAGGAACTGACTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CAA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACAAAATATTCAGTGCATaGAAAGGCAAGTGGAACTCT +
Preference number: 3 (lower is better)
Translates to: CEALGSVPSTAKERTSGYKIFSA*KGKWNS
Trigger: AGAGTTCCACTTGCCTTTCAATGCACTGAATATTTT...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 72 bp AGCCCTTGGAACTTTCGATTTAGGCCTCCTCCTGCTTaGAGAAGGCATCCACTTACTACCCTGTACAAACAA +
Preference number: 3 (lower is better)
Translates to: SPWNFRFRPPPA*RRHPLTTLYKQ
Trigger: TTGTTTGTACAGGGTAGTAAGTGGATGCCTTCTTCAAGCAGGAGGAGGCCTAAATCGAAAGTTCCAAGGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 72 bp GAGGGAATTCGCTACCTAAGGCTCAGCTGTACAGAGTaGCAGTGGCAGCTGACACTGAAATTTAAATGGAGT +
Preference number: 3 (lower is better)
Translates to: EGIRYLRLSCTE*QWQLTLKFKWS
Trigger: ACTCCATTTAAATTTCAGTGTCAGCTGCCACTGTCACTCTGTACAGCTGAGCCTTAGGTAGCGAATTCCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 72 bp GGAAAGAGCTACAGAGCCATTAGTAAGGCAAGAGACTaGCAGTGTCTTCCCTACTTGAGCATTAACCTTCCA +
Preference number: 3 (lower is better)
Translates to: GKSYRAISKARD*QCLPYLSINLP
Trigger: TGGAAGGTTAATGCTCAAGTAGGGAAGACACTGTCAGTCTCTTGCCTTACTAATGGCTCTGTAGCTCTTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR GCA 72 bp AGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTaGTGTGCTGTACTAGATCCATTTCTTCAATGCCCT +
Preference number: 3 (lower is better)
Translates to: RPFLQLHTEQPL*CAVLDPFLQCP
Trigger: AGGGCATTGAAGAAATGGATCTAGTACAGCACAGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR-3UTR CAA 90 bp GCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTTCGCACAAAAAGAATTTTaGACACCACCTCTAACAGTC +
Preference number: 3 (lower is better)
Translates to: ALILQTSSNLHSSKRDHFAQKEF*TPPLTV
Trigger: GACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGC...GAAATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR TCA 72 bp CTTCTAATGTGCAACACAACACAGCTTAACAGTATATaGAAGAAAGTGGCCTGTATTTTTCCCTCAAGTGCA +
Preference number: 3 (lower is better)
Translates to: LLMCNTTQLNSI*KKVACIFPSSA
Trigger: TGCACTTGAGGGAAAAATACAGGCCACTTTCTTTCATATACTGTTAAGCTGTGTTGTGTTGCACATTAGAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR GCA 72 bp TTTGCAGAGGAGGAGACAAGAAATATAAAAGGACCATaGCTTGGTTATGTATTTTGCTTCTTTCCAAGTTCT +
Preference number: 3 (lower is better)
Translates to: FAEEETRNIKGP*LGYVFCFFPSS
Trigger: AGAACTTGGAAAGAAGCAAAATACATAACCAAGGCATGGTCCTTTTATATTTCTTGTCTCCTCCTCTGCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CCA 72 bp AATCACCTTAAAATATTCAGTGCATTGAAAGGCAAGTaGAACTCTGATTTCATATTCACAACTCAGAAGACC +
Preference number: 3 (lower is better)
Translates to: NHLKIFSALKGK*NSDFIFTTQKT
Trigger: GGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGCCTTTCAATGCACTGAATATTTTAAGGTGATT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR TCA 72 bp AAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATaGCCTTTCAGTCACAAAAAGAACATAGTAAGGAAA +
Preference number: 3 (lower is better)
Translates to: KNKWLLLLLLIG*PFSHKKNIVRK
Trigger: TTTCCTTACTATGTTCTTTTTGTGACTGAAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
3UTR CAA 72 bp CTTCCAGGCTGGAGGTGTGGCTCAGCCCTAAAGCGCTaGCCTAGCGTGTGCGAGGCCCTGGGTTCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: LPGWRCGSALKR*PSVCEALGSVP
Trigger: GGGAACTGAACCCAGGGCCTCGCACACGCTAGGCAAGCGCTTTAGGGCTGAGCCACACCTCCAGCCTGGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGGGTTTGTGGTTGCTaGACTCCCCAGGAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHWVCGC*TPQEQG
Trigger: TCCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCA...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGTGCTGTGCTGGCTGCTaGTGGCGAGCTAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSECCAGC*WRASIC
Trigger: GCAGATGCTAGCTCGCCATCAGCAGCCAGCACAGCA...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGGACTCTATGCTGCTGTaGGGGTTGCTGAGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSEDSMLL*GLLRGS
Trigger: GGACCCCCTCAGCAACCCCCACAGCAGCATAGAGTC...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp CCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGAGTGCTCTGGGAGTCTCTaGGGCCCACCTTCTTGTGTC +
Preference number: 4 (lower is better)
Translates to: PVLRGMVWPAPVHTTPTECSGSL*GPPSCV
Trigger: GACACAAGAAGGTGGGCCGCAGAGACTCCCAGAGCA...CTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGAGAACTCATTGCTGCTCTaGGAGTCTCTGCGGCCCACC +
Preference number: 4 (lower is better)
Translates to: PVLRGMVWPAPVHTTPTENSLLL*ESLRPT
Trigger: GGTGGGCCGCAGAGACTCCCAGAGCAGCAATGAGTT...CTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACGGGACTGTTGTGGAGTaGCACTTTGCACCACGAGTT +
Preference number: 4 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHGTVVE*HFAPRV
Trigger: AACTCGTGGTGCAAAGTGTCACTCCACAACAGTCCC...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACCCACCTTCTTGTGTCTaGGGGCCCTCTCGGGCGTGC +
Preference number: 4 (lower is better)
Translates to: CEALGSVPSTAKERTSGYPPSCV*GPSRAC
Trigger: GCACGCCCGAGAGGGCCCGCAGACACAAGAAGGTGG...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGTTTGACAGGCGTTGCTaGACTCTGAATGGTCAGCAC +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSEFDRRC*TLNGQH
Trigger: GTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAA...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACATGCTGCTGGTGCATTaGATGCTGATACTGCTGCAA +
Preference number: 4 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHMLLVH*MLILLQ
Trigger: TTGCAGCAGTATCAGCATGCAATGCACCAGCAGCAT...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACTACACTTCTGGGCCGTaGAGGCAGAGGCCGGGCATC +
Preference number: 4 (lower is better)
Translates to: CEALGSVPSTAKERTSGYYTSGP*RQRPGI
Trigger: GATGCCCGGCCTCTGCCTGCACGGCCCAGAAGTGTA...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGAGGTAGCGAGAATTGTCTaGGATGGTGAAGCTGCCATC +
Preference number: 4 (lower is better)
Translates to: PVLRGMVWPAPVHTTPTEVARIV*DGEAAI
Trigger: GATGGCAGCTTCACCATCCCAGACAATTCTCGCTAC...CTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTTGCTGAACTCTGAATaGTCAGCACACTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHLLNSE*SAHWKW
Trigger: CCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAA...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGCTTTCACTTTTACTaGCTGACACGGAGAAGGGCT +
Preference number: 4 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHCFHFY*LTRRRA
Trigger: AGCCCTTCTCCGTGTCAGCCAGTAAAAGTGAAAGCA...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTACAGGAGGGCTGTGTCTaGGGCCACGCCAGGTTTGTC +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLQEGCV*GHARFV
Trigger: GACAAACCTGGCGTGGCCCCAGACACAGCCCTCCTG...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGAGGGCTGGAAGGGAGTaGAGCCAAATATATCTACAC +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSERAGRE*SQIYLH
Trigger: GTGTAGATATATTTGGCTCCACTCCCTTCCAGCCCT...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGTCACAGATAGCAACCTaGCTCTCACCAAAAGGAAGA +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSESQIAT*LSPKGR
Trigger: TCTTCCTTTTGGTGAGAGTCAGGTTGCTATCTGTGA...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACCCACACTATCTCGTATGGGTTTGTGGTTGCTaGACTCCCCAGGAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: PTLSLGMLKGVSDPHYLVWVCGC*TPQEQG
Trigger: TCCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCA...TACGAGATAGTGTGGGTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGCTTTTCAGGAGAACCTaGGTGAGAAATGAAAGGGAC +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSELFRRT*VRNERD
Trigger: GTCCCTTTCATTTCTCACTCAGGTTCTCCTGAAAAG...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp ATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACCTCCAGTCTCCCTGCTaGAACTGCTGGAGGACTCTA +
Preference number: 4 (lower is better)
Translates to: ITIVQPTLSLGMLKGVSDLQSPC*NCWRTL
Trigger: TAGAGTCCTCCAGCAGTTGCAGCAGGGAGACTGGAG...GTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGACTGTGCTGCAGGCTCTaGGGAGCAGGCGCTGCAAAG +
Preference number: 4 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRLCCRL*GAGAAK
Trigger: CTTTGCAGCGCCTGCTCCGCAGAGCCTGCAGCACAG...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp AGGTGCAAACATAGTCTCTGCCTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGCGCTGCCCTCCGACTTaGGCATCCGAGAGAACTTCT +
Preference number: 4 (lower is better)
Translates to: RCKHSLCLWHRTVSGAARRCPPT*ASERTS
Trigger: AGAAGTTCTCTCGGATGCCCAAGTCGGAGGGCAGCG...CCGGGCTGCACCACTTACTGTCCTGTGCCAAAGGCAGAGACTATGTTTGCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTACAGTCAGCGCGACGCTaGTGTTCTCCTTGGAATCGG +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLQSARR*CSPWNR
Trigger: CCGATTCCAAGGAGAACATCAGCGTCGCGCTGACTG...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACGACACGGAGAAGGGCTaGAAGGGAGTGGAGCCAAAT +
Preference number: 4 (lower is better)
Translates to: CEALGSVPSTAKERTSGYDTEKG*KGVEPN
Trigger: ATTTGGCTCCACTCCCTTCCAGCCCTTCTCCGTGTC...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACCAGATGGCAGGACACTaGCCCTGTCTTTGCCATCAG +
Preference number: 4 (lower is better)
Translates to: CEALGSVPSTAKERTSGYQMAGH*PCLCHQ
Trigger: CTGATGGCAAAGACAGGGCCAGTGTCCTGCCATCTG...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTACAGACTCTCGTCAGATaGCAGGACACTGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLQTLVR*QDTGPV
Trigger: GACAGGGCCAGTGTCCTGCCATCTGACGAGAGTCTG...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGCACATTGTCACTAATTaGATTGACAGCACAGTCCAA +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSEHIVTN*IDSTVQ
Trigger: TTGGACTGTGCTGTCAATTCAATTAGTGACAATGTG...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp AGGTGCAAACATAGTCTCTGCCTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGACGTCGAAGTCCTCCTaGTCTGGAAAAGCATGCTGG +
Preference number: 4 (lower is better)
Translates to: RCKHSLCLWHRTVSGAARTSKSS*SGKACW
Trigger: CCAGCATGCTTTTCCAGAGCAGGAGGACTTCGACGT...CCGGGCTGCACCACTTACTGTCCTGTGCCAAAGGCAGAGACTATGTTTGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp GGTGTCTCAGACCCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCTACAGAGCGCTGCCCTCCGACTTaGGCATCCGAGAGAACTTCT +
Preference number: 4 (lower is better)
Translates to: GVSDPHYLVLSVQERATERCPPT*ASERTS
Trigger: AGAAGTTCTCTCGGATGCCCAAGTCGGAGGGCAGCG...CTCTGTAGCTCTTTCCTGCACACTCAGTACGAGATAGTGTGGGTCTGAGACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGAAGGTTGATCATTTCTaGTGCTCTATACGACAGAGT +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSEKVDHF*CSIRQS
Trigger: ACTCTGTCGTATAGAGCACCAGAAATGATCAACCTT...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp GTCCCTCAGCGGCTACACAGCAGCTTTCCCAGGGAGCCCACGGGAACCTCTGAGTGGTATCTGTTATTCTaGCTTTCATCTGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: VPQRLHSSFPREPTGTSEWYLLF*LSSGFS
Trigger: GGAAAAGCCAGATGAAAGCCAGAATAACAGATACCA...CTCAGAGGTTCCCGTGGGCTCCCTGGGAAAGCTGCTGTGTAGCCGCTGAGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp AGGTGCAAACATAGTCTCTGCCTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGGCTCCTTTGGGTTTGTaGTTGCTGAACTCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: RCKHSLCLWHRTVSGAARAPLGL*LLNSPG
Trigger: TCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGC...CCGGGCTGCACCACTTACTGTCCTGTGCCAAAGGCAGAGACTATGTTTGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACGGTCGGGTGTGTTATTaGCATACATTCGCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: ITIVQPTLSLGMLKGVSDGRVCY*HTFASV
Trigger: CACTGAAGCGAATGTATGTCAATAACACACCCGACC...GTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp CCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCTACAGAGCCATTAGTAAGGTGCTGTGCTGGCTGCTaGTGGCGAGCTAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: PHYLVLSVQERATEPLVRCCAGC*WRASIC
Trigger: GCAGATGCTAGCTCGCCATCAGCAGCCAGCACAGCA...CCTTACTAATGGCTCTGTAGCTCTTTCCTGCACACTCAGTACGAGATAGTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTAGCTGGTGAGAACTCTTaGGGGGAGGTAAGATACTCG +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLAGENS*GEVRYS
Trigger: CGAGTATCTTACCTCCCCGCAAGAGTTCTCACCAGC...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTAGCACCAGGAAAACAGTaGAGAATCCACCTTCGGCCA +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLAPGKQ*RIHLRP
Trigger: TGGCCGAAGGTGGATTCTCCACTGTTTTCCTGGTGC...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGACCCTGCTGCAACTGCTaGAGGACTCTATGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRPCCNC*RTLCCC
Trigger: ACAGCAGCATAGAGTCCTCCAGCAGTTGCAGCAGGG...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp AGGTGCAAACATAGTCTCTGCCTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGAATGTCTCTGCGCTGTaGAAGGACCCGTGTACTGAA +
Preference number: 4 (lower is better)
Translates to: RCKHSLCLWHRTVSGAARNVSAL*KDPCTE
Trigger: TTCAGTACACGGGTCCTTCCACAGCGCAGAGACATT...CCGGGCTGCACCACTTACTGTCCTGTGCCAAAGGCAGAGACTATGTTTGCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACTCACAGATAGCAACCTaGCTCTCACCAAAAGGAAGA +
Preference number: 4 (lower is better)
Translates to: ITIVQPTLSLGMLKGVSDSQIAT*LSPKGR
Trigger: TCTTCCTTTTGGTGAGAGTCAGGTTGCTATCTGTGA...GTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTAATCTCCAGTCTCCCTaGTGCAACTGCTGGAGGACT +
Preference number: 4 (lower is better)
Translates to: TLLGADLFSSYILSNLCANLQSP*CNCWRT
Trigger: AGTCCTCCAGCAGTTGCAGCAGGGAGACTGGAGATT...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GGTGTCTCAGACCCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCTACAGAGAATCTCCAGTCTCCCTaGTGCAACTGCTGGAGGACT +
Preference number: 4 (lower is better)
Translates to: GVSDPHYLVLSVQERATENLQSP*CNCWRT
Trigger: AGTCCTCCAGCAGTTGCAGCAGGGAGACTGGAGATT...CTCTGTAGCTCTTTCCTGCACACTCAGTACGAGATAGTGTGGGTCTGAGACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp AACAAAGCAGCCCCTTTCTGTCACCACTCAGTGAAGGACACAACAAGCCATCACTGGCGAGCTAGCATCTaGTGCTGCAAGAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: NKAAPFCHHSVKDTTSHHWRASI*CCKKAC
Trigger: GCAGGCTTTCTTGCAGCAGCAGATGCTAGCTCGCCA...GTGATGGCTTGTTGTGTCCTTCACTGAGTGGTGACAGAAAGGGGCTGCTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGCCCGTGTTCTCCCTGTaGGTCTTCATCCTCTTGTTC +
Preference number: 4 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEPVFSL*VFILLF
Trigger: GAACAAGAGGATGAAGACGCACAGGGAGAACACGGG...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTAGAATGGTCAGCACACTaGAAGTGGCAGCAGTGGAAT +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLEWSAH*KWQQWN
Trigger: ATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTC...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp ATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACAAGAAGAGTCCACTATaGTTCCAACCTGAGCTGGAA +
Preference number: 4 (lower is better)
Translates to: ITIVQPTLSLGMLKGVSDKKSPL*FQPELE
Trigger: TTCCAGCTCAGGTTGGAACCATAGTGGACTCTTCTT...GTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACTCCCAGGCAAAATGGTaGTGTGATCAACGCAGATGT +
Preference number: 4 (lower is better)
Translates to: CEALGSVPSTAKERTSGYSQAKW*CDQRRC
Trigger: ACATCTGCGTTGATCACACCACCATTTTGCCTGGGA...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGAGGCAAAATGGTGGTGTaGTCAACGCAGATGTCGCTT +
Preference number: 4 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRGKMVV*STQMSL
Trigger: AAGCGACATCTGCGTTGATCACACCACCATTTTGCC...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ACAAGCCATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCACATTGTCACTAATTaGATTGACAGCACAGTCCAA +
Preference number: 4 (lower is better)
Translates to: TSHHHRAAHAFSGHAQGCHIVTN*IDSTVQ
Trigger: TTGGACTGTGCTGTCAATTCAATTAGTGACAATGTG...ACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGGCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTTATCAGCCTTGGTGGTaGTCGGTTTCCCTCCATAAA +
Preference number: 4 (lower is better)
Translates to: TLLGADLFSSYILSNLCAYQPWW*SVSLHK
Trigger: TTTATGGAGGGAAACCGATCACCACCAAGGCTGATA...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp AGGTGCAAACATAGTCTCTGCCTTTGGCACAGGACAGTAAGTGGTGCAGCCCGGTTGTCTTGGTGCAATTaGGGTTTCTGTTGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: RCKHSLCLWHRTVSGAARLSWCN*GFCWSN
Trigger: ATTGGACCAACAGAAACCTCAATTGCACCAAGACAA...CCGGGCTGCACCACTTACTGTCCTGTGCCAAAGGCAGAGACTATGTTTGCACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp AACAAAGCAGCCCCTTTCTGTCACCACTCAGTGAAGGACACAACAAGCCATCACTTTGACAGGCGTTGCTaGACTCTGAATGGTCAGCAC +
Preference number: 4 (lower is better)
Translates to: NKAAPFCHHSVKDTTSHHFDRRC*TLNGQH
Trigger: GTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAA...GTGATGGCTTGTTGTGTCCTTCACTGAGTGGTGACAGAAAGGGGCTGCTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTAAACCTGAGTGAGAAATaGAAGGGACGGAAGCAAAAG +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLNLSEK*KGRKQK
Trigger: CTTTTGCTTCCGTCCCTTTCATTTCTCACTCAGGTT...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGATCAGCAGAGGCCTGTaGCCCAGGTTCTCCGGCTCA +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRISRGL*PRFSGS
Trigger: TGAGCCGGAGAACCTGGGTCACAGGCCTCTGCTGAT...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCCGCCAGGTTTGTCCCTaGGCAGGGAGCTCGTGTCTC +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIRQVCP*AGSSCL
Trigger: GAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCG...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTTGGAAGTGGCAGCAGTaGAATTGGCCTTTGGTCTTT +
Preference number: 4 (lower is better)
Translates to: TLLGADLFSSYILSNLCAWKWQQ*NWPLVF
Trigger: AAAGACCAAAGGCCAATTCCACTGCTGCCACTTCCA...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGTCGTGTCTCCTCTCTTaGTCTTTGCCTGTTCACACT +
Preference number: 4 (lower is better)
Translates to: MERSQSGHHLSIFHQEDESCLLS*SLPVHT
Trigger: AGTGTGAACAGGCAAAGACCAAGAGAGGAGACACGA...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp AACAAAGCAGCCCCTTTCTGTCACCACTCAGTGAAGGACACAACAAGCCATCACATACATTCGCTTCAGTaGACATCGGATCCCACTGTG +
Preference number: 4 (lower is better)
Translates to: NKAAPFCHHSVKDTTSHHIHSLQ*TSDPTV
Trigger: CACAGTGGGATCCGATGTGCACTGAAGCGAATGTAT...GTGATGGCTTGTTGTGTCCTTCACTGAGTGGTGACAGAAAGGGGCTGCTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCTGCGGAGCAGGCGCTaGAAAGAAGGGAACAGCGCC +
Preference number: 4 (lower is better)
Translates to: PQKKEQVATTPSINRMTFLRSRR*KEGNSA
Trigger: GGCGCTGTTCCCTTCTTTGCAGCGCCTGCTCCGCAG...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGAAGAAGAGTCCACTATaGTTCCAACCTGAGCTGGAA +
Preference number: 4 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEKKSPL*FQPELE
Trigger: TTCCAGCTCAGGTTGGAACCATAGTGGACTCTTCTT...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CTCAAGTGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCACTATGGTTCCAACCTaGGCTGGAAGTGACGAGGCG +
Preference number: 4 (lower is better)
Translates to: LKCTKRIFDTTSNSLWPCTMVPT*AGSDEA
Trigger: CGCCTCGTCACTTCCAGCTCAGGTTGGAACCATAGT...GCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCACTTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp CTCAAGTGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCTCCCTGCTGCAACTaGTGGAGGACTCTATGCTGC +
Preference number: 4 (lower is better)
Translates to: LKCTKRIFDTTSNSLWPCSPCCN*WRTLCC
Trigger: GCAGCATAGAGTCCTCCAGCAGTTGCAGCAGGGAGA...GCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCACTTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGCTCCAGTCTCCCTGCTaGAACTGCTGGAGGACTCTA +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRLQSPC*NCWRTL
Trigger: TAGAGTCCTCCAGCAGTTGCAGCAGGGAGACTGGAG...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGTGGCGAGCTAGCATCTaGTGCTGCAAGAAAGCCTGC +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRWRASI*CCKKAC
Trigger: GCAGGCTTTCTTGCAGCAGCAGATGCTAGCTCGCCA...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACTTTCTGTTGGTCCAATaGTATCTGTTATTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: CEALGSVPSTAKERTSGYFLLVQ*YLLFWL
Trigger: AAGCCAGAATAACAGATACCATTGGACCAACAGAAA...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CTCAAGTGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCGGCGTTGCTGAACTCTaGATGGTCAGCACACTGGAA +
Preference number: 4 (lower is better)
Translates to: LKCTKRIFDTTSNSLWPCGVAEL*MVSTLE
Trigger: TTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCC...GCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCACTTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCCAGGAGCAGGGACTTTaGCAGGCGTTGCTGAACTCT +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIQEQGL*QALLNS
Trigger: AGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTG...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCACTATGGTTCCAACCTaGGCTGGAAGTGACGAGGCG +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFITMVPT*AGSDEA
Trigger: CGCCTCGTCACTTCCAGCTCAGGTTGGAACCATAGT...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp CCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCTACAGAGCCATTAGTAAGGTCGGTAAAGCCTGTCTaGAGCTTCTTATTCATCTGG +
Preference number: 4 (lower is better)
Translates to: PHYLVLSVQERATEPLVRSVKPV*SFLFIW
Trigger: CCAGATGAATAAGAAGCTGCAGACAGGCTTTACCGA...CCTTACTAATGGCTCTGTAGCTCTTTCCTGCACACTCAGTACGAGATAGTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTACTGATTTGTAAAATTTaGAACTGCCTCTTTCTCAGC +
Preference number: 4 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLLICKI*NCLFLS
Trigger: GCTGAGAAAGAGGCAGTTGCAAATTTTACAAATCAG...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp CAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCAGTTCCCATCCCCTCTGTaGTGCAGGCTCTGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: QKKEQVATTPSINRMTFQFPSPL*CRLCGA
Trigger: TGCTCCGCAGAGCCTGCAGCACAGAGGGGATGGGAA...CTGAAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGCAAAAACATCCTCCTTaGTTTCACTTTTACTGGCTG +
Preference number: 4 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEQKHPP*FHFYWL
Trigger: CAGCCAGTAAAAGTGAAAGCAAGGAGGATGTTTTTG...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTGACTCTATGCTGCTGTaGGGGTTGCTGAGGGGGTCC +
Preference number: 4 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICDSMLL*GLLRGS
Trigger: GGACCCCCTCAGCAACCCCCACAGCAGCATAGAGTC...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCGGCGTTGCTGAACTCTaGATGGTCAGCACACTGGAA +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIGVAEL*MVSTLE
Trigger: TTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCC...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTTCCTCTTTCTCAGCAACTaGCCTGTTGGCACCGTAAGA +
Preference number: 4 (lower is better)
Translates to: ALILQTSSNLHSSKRDHFLFLSN*PVGTVR
Trigger: TCTTACGGTGCCAACAGGTCAGTTGCTGAGAAAGAG...GAAATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR GCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTTCTCCCTGCTGCAACTaGTGGAGGACTCTATGCTGC +
Preference number: 4 (lower is better)
Translates to: PQKKEQVATTPSINRMTFSPCCN*WRTLCC
Trigger: GCAGCATAGAGTCCTCCAGCAGTTGCAGCAGGGAGA...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCTTCTGCAAGCTGCGCTaGTTGACTTTCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIFCKLR*LTFCCC
Trigger: GCAGCAGCAGAAAGTCAAGCAGCGCAGCTTGCAGAA...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCCATTCTCAATGTCTCTaGGCTGTGGAAGGACCCGTG +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIHSQCL*AVEGPV
Trigger: CACGGGTCCTTCCACAGCGCAGAGACATTGAGAATG...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp GCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCAACTAGCACCAGGAAAACAGTaGAGAATCCACCTTCGGCCA +
Preference number: 4 (lower is better)
Translates to: AQKEFLTPPLTVFGLAQLAPGKQ*RIHLRP
Trigger: TGGCCGAAGGTGGATTCTCCACTGTTTTCCTGGTGC...TAGTTGAGCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp CTCAAGTGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCGTAGCGAGAATTGTCTaGGATGGTGAAGCTGCCATC +
Preference number: 4 (lower is better)
Translates to: LKCTKRIFDTTSNSLWPCVARIV*DGEAAI
Trigger: GATGGCAGCTTCACCATCCCAGACAATTCTCGCTAC...GCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCACTTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp GCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTTCGAATGGTCAGCACACTaGAAGTGGCAGCAGTGGAAT +
Preference number: 4 (lower is better)
Translates to: ALILQTSSNLHSSKRDHFEWSAH*KWQQWN
Trigger: ATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTC...GAAATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp GCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCAACTAGCTCCTTTGGGTTTGTaGTTGCTGAACTCCCCAGGA +
Preference number: 4 (lower is better)
Translates to: AQKEFLTPPLTVFGLAQLAPLGL*LLNSPG
Trigger: TCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGC...TAGTTGAGCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCGAAGTCCTCCTGCTCTaGAAAAGCATGCTGGGACAG +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIEVLLL*KSMLGQ
Trigger: CTGTCCCAGCATGCTTTTCCAGAGCAGGAGGACTTC...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCTGGTGCCACAAGTCTaGAGGATGAAAGGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: PQKKEQVATTPSINRMTFLVPQV*RMKGLG
Trigger: GCCAAGCCCTTTCATCCTCCAGACTTGTGGCACCAG...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGGTCGGGTGTGTTATTaGCATACATTCGCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRGRVCY*HTFASV
Trigger: CACTGAAGCGAATGTATGTCAATAACACACCCGACC...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTCAGGAGCAGGGACTTTaGCAGGCGTTGCTGAACTCT +
Preference number: 4 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICQEQGL*QALLNS
Trigger: AGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTG...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGTGCCTGTTCACACTCTaGATCAGAGCTGTGTTTGTC +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRCLFTL*IRAVFV
Trigger: GACAAACACAGCTCTGATTCAGAGTGTGAACAGGCA...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp CTTCCCTACTTGAGCATTAACCTTCCATGTTTTGAAGATGTAATGAATTGCACACCCTGCTGCAACTGCTaGAGGACTCTATGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: LPYLSINLPCFEDVMNCTPCCNC*RTLCCC
Trigger: ACAGCAGCATAGAGTCCTCCAGCAGTTGCAGCAGGG...TGTGCAATTCATTACATCTTCAAAACATGGAAGGTTAATGCTCAAGTAGGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
3UTR CAA 72 bp AAAATGCCTCTAACAGCAATGCAAAGGAGCTACCCATaGGACCTCCAATTAAATCATCTGTCCAATGAGCGG +
Preference number: 4 (lower is better)
Translates to: KMPLTAMQRSYP*DLQLNHLSNER
Trigger: CCGCTCATTGGACAGATGATTTAATTGGAGGTCCAATGGGTAGCTCCTTTGCATTGCTGTTAGAGGCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTAAAAGGATTCCAGCCTaGCATGTCAGGAGGGTGACT +
Preference number: 4 (lower is better)
Translates to: PQKKEQVATTPSINRMTFKRIPA*HVRRVT
Trigger: AGTCACCCTCCTGACATGTCAGGCTGGAATCCTTTT...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGTCGGTAAAGCCTGTCTaGAGCTTCTTATTCATCTGG +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRSVKPV*SFLFIW
Trigger: CCAGATGAATAAGAAGCTGCAGACAGGCTTTACCGA...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTGCTGGTGAGAACTCTTaGGGGGAGGTAAGATACTCG +
Preference number: 4 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICAGENS*GEVRYS
Trigger: CGAGTATCTTACCTCCCCGCAAGAGTTCTCACCAGC...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp GCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCAACTATGGAAGTGGCAGCAGTaGAATTGGCCTTTGGTCTTT +
Preference number: 4 (lower is better)
Translates to: AQKEFLTPPLTVFGLAQLWKWQQ*NWPLVF
Trigger: AAAGACCAAAGGCCAATTCCACTGCTGCCACTTCCA...TAGTTGAGCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp CTCAAGTGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCCGGCTCGGGAAGAGTTaGTGGAAGAAAAGAATTATT +
Preference number: 4 (lower is better)
Translates to: LKCTKRIFDTTSNSLWPCRLGKS*WKKRII
Trigger: AATAATTCTTTTCTTCCATCAACTCTTCCCGAGCCG...GCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCACTTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GATGTCAAACATGAGTGCCTTACAGGAATTCTTTACATAAATGTAAGCCATCTGTGCAAGAAAGCCTGCTaGTACTGCTGCATCATGGCA +
Preference number: 4 (lower is better)
Translates to: DVKHECLTGILYINVSHLCKKAC*YCCIMA
Trigger: TGCCATGATGCAGCAGTATCAGCAGGCTTTCTTGCA...CAGATGGCTTACATTTATGTAAAGAATTCCTGTAAGGCACTCATGTTTGACATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GATGTCAAACATGAGTGCCTTACAGGAATTCTTTACATAAATGTAAGCCATCTGAAAAGGATTCCAGCCTaGCATGTCAGGAGGGTGACT +
Preference number: 4 (lower is better)
Translates to: DVKHECLTGILYINVSHLKRIPA*HVRRVT
Trigger: AGTCACCCTCCTGACATGTCAGGCTGGAATCCTTTT...CAGATGGCTTACATTTATGTAAAGAATTCCTGTAAGGCACTCATGTTTGACATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTTCAGGAGAACCTGAGTaGGAAATGAAAGGGACGGAA +
Preference number: 4 (lower is better)
Translates to: PQKKEQVATTPSINRMTFSGEPE*EMKGTE
Trigger: TTCCGTCCCTTTCATTTCTCACTCAGGTTCTCCTGA...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCACCTTCAGATCCCGGTaGATTATGGGAGTCTTACAT +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFITFRSR*IMGVLH
Trigger: ATGTAAGACTCCCATAATCCACCGGGATCTGAAGGT...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTATATATCTACACTTCTaGGCCGTGCAGGCAGAGGCC +
Preference number: 4 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFIYLHF*AVQAEA
Trigger: GGCCTCTGCCTGCACGGCCCAGAAGTGTAGATATAT...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTTGCAAGAAAGCCTGCTaGTACTGCTGCATCATGGCA +
Preference number: 4 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFCKKAC*YCCIMA
Trigger: TGCCATGATGCAGCAGTATCAGCAGGCTTTCTTGCA...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTCTCTTTCTCAGCAACTaGCCTGTTGGCACCGTAAGA +
Preference number: 4 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFLFLSN*PVGTVR
Trigger: TCTTACGGTGCCAACAGGTCAGTTGCTGAGAAAGAG...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCATTTCCAGGTCTCAATaGTCCTTTGGGTTTGTGGTT +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIISRSQ*SFGFVV
Trigger: AACCACAAACCCAAAGGAGCATTGAGACCTGGAAAT...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTATGCTGCTGGTGCATTaGATGCTGATACTGCTGCAA +
Preference number: 4 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICMLLVH*MLILLQ
Trigger: TTGCAGCAGTATCAGCATGCAATGCACCAGCAGCAT...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp CTTGCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTGGTATCTGTTATTCTaGCTTTCATCTGGCTTTTCC +
Preference number: 4 (lower is better)
Translates to: LALILQTSSNLHSSKRDHWYLLF*LSSGFS
Trigger: GGAAAAGCCAGATGAAAGCCAGAATAACAGATACCA...ATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTTTGCTGAACTCTGAATaGTCAGCACACTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICLLNSE*SAHWKW
Trigger: CCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAA...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTTCTGGAAAAGCATGCTaGGACAGGTTCTTCCCATCC +
Preference number: 4 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFSGKAC*DRFFPS
Trigger: GGATGGGAAGAACCTGTCCCAGCATGCTTTTCCAGA...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGAAGAAAAGAATTATTaGTGTTGGAGACCGGACAAT +
Preference number: 4 (lower is better)
Translates to: VQGKQLNSISNVSQLHLREEKNY*CWRPDN
Trigger: ATTGTCCGGTCTCCAACATCAATAATTCTTTTCTTC...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp GCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTTCGAAGAAAAGAATTATTaGTGTTGGAGACCGGACAAT +
Preference number: 4 (lower is better)
Translates to: ALILQTSSNLHSSKRDHFEEKNY*CWRPDN
Trigger: ATTGTCCGGTCTCCAACATCAATAATTCTTTTCTTC...GAAATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCGCAGTGATAGATTTTTaGTTTGGAGAATGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIAVIDF*FGECSV
Trigger: GACGGAACATTCTCCAAATCAAAAATCTATCACTGC...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTATACATTCGCTTCAGTaGACATCGGATCCCACTGTG +
Preference number: 4 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFIHSLQ*TSDPTV
Trigger: CACAGTGGGATCCGATGTGCACTGAAGCGAATGTAT...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CCA 90 bp TGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCAACTAAGGTTGATCATTTCTaGTGCTCTATACGACAGAGT +
Preference number: 4 (lower is better)
Translates to: CTKRIFDTTSNSLWPCSTKVDHF*CSIRQS
Trigger: ACTCTGTCGTATAGAGCACCAGAAATGATCAACCTT...AGTTGAGCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp GCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTTCTTTCTGTTGGTCCAATaGTATCTGTTATTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: ALILQTSSNLHSSKRDHFFLLVQ*YLLFWL
Trigger: AAGCCAGAATAACAGATACCATTGGACCAACAGAAA...GAAATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR TCA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTTTGTCTTGGTGCAATTaGGGTTTCTGTTGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICLSWCN*GFCWSN
Trigger: ATTGGACCAACAGAAACCTCAATTGCACCAAGACAA...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CCA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTCCTTGGAATCGGAAATaGTTAAAAACTCATTGCTGC +
Preference number: 4 (lower is better)
Translates to: PQKKEQVATTPSINRMTFPWNRK*LKTHCC
Trigger: GCAGCAATGAGTTTTTAACCATTTCCGATTCCAAGG...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR TCA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTCGGCTCGGGAAGAGTTaGTGGAAGAAAAGAATTATT +
Preference number: 4 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFRLGKS*WKKRII
Trigger: AATAATTCTTTTCTTCCATCAACTCTTCCCGAGCCG...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR GCA 90 bp GATGTCAAACATGAGTGCCTTACAGGAATTCTTTACATAAATGTAAGCCATCTGCTGATTTGTAAAATTTaGAACTGCCTCTTTCTCAGC +
Preference number: 4 (lower is better)
Translates to: DVKHECLTGILYINVSHLLICKI*NCLFLS
Trigger: GCTGAGAAAGAGGCAGTTGCAAATTTTACAAATCAG...CAGATGGCTTACATTTATGTAAAGAATTCCTGTAAGGCACTCATGTTTGACATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS GCA 90 bp CTGGTAGCGGCCGACGGCGAACACCCGGACCCCCATGGACGAGCTTaGGAAGCCGCCGCCGAGCCCGCCGCCCGCGGCCCCGCCAGCCGC +
Preference number: 5 (lower is better)
Translates to: LVAADGEHPDPHGRA*EAAAEPAARGPASR
Trigger: GCGGCTGGCGGGGCCGCGGGCGGCGGGCTCGGCGGCGGCTTCGCAAGCTCGTCCATGGGGGTCCGGGTGTTCGCCGTCGGCCGCTACCAG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 90 bp CAGCGCATCAGCAGGCGAGCGGGCCGGGGTCAGGAGGGCTGTGTCTaGGGCCACGCCAGGTTTGTCCCTGCGCAGGGAGCTCGTGTCTCC +
Preference number: 5 (lower is better)
Translates to: QRISRRAGRGQEGCV*GHARFVPAQGARVS
Trigger: GGAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCCAGACACAGCCCTCCTGACCCCGGCCCGCTCGCCTGCTGATGCGCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 90 bp GGAAAACAGTGGAGAATCCACCTTCGGCCAGCGACTCCTCCAGGGTaGCCTGGTAGCGGCCGACGGCGAACACCCGGACCCCCATGGACG +
Preference number: 5 (lower is better)
Translates to: GKQWRIHLRPATPPG*PGSGRRRTPGPPWT
Trigger: CGTCCATGGGGGTCCGGGTGTTCGCCGTCGGCCGCTACCAGGTCACCCTGGAGGAGTCGCTGGCCGAAGGTGGATTCTCCACTGTTTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS GCA 90 bp CCGGGGTCAGGAGGGCTGTGTCTGGGGCCACGCCAGGTTTGTCCCTaGGCAGGGAGCTCGTGTCTCCTCTCTTGGTCTTTGCCTGTTCAC +
Preference number: 5 (lower is better)
Translates to: PGSGGLCLGPRQVCP*AGSSCLLSWSLPVH
Trigger: GTGAACAGGCAAAGACCAAGAGAGGAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCCAGACACAGCCCTCCTGACCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 90 bp GGCCCTGATGGGGCTGGTGCCACAAGTCTGGAGGATGAAAGGGCTTaGCACCGAATGGGTCCAGCAGACTCTCGTCAGATGGCAGGACAC +
Preference number: 5 (lower is better)
Translates to: GPDGAGATSLEDERA*HRMGPADSRQMAGH
Trigger: GTGTCCTGCCATCTGACGAGAGTCTGCTGGACCCATTCGGTGCCAAGCCCTTTCATCCTCCAGACTTGTGGCACCAGCCCCATCAGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 90 bp TGCTCTGGAAAAGCATGCTGGGACAGGTTCTTCCCATCCCCTCTGTaGTGCAGGCTCTGCGGAGCAGGCGCTGCAAAGAAGGGAACAGCG +
Preference number: 5 (lower is better)
Translates to: CSGKACWDRFFPSPL*CRLCGAGAAKKGTA
Trigger: CGCTGTTCCCTTCTTTGCAGCGCCTGCTCCGCAGAGCCTGCAGCACAGAGGGGATGGGAAGAACCTGTCCCAGCATGCTTTTCCAGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACGGTCTCAATGCTCCTTaGGGTTTGTGGTTGCTGAAC +
Preference number: 5 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHGLNAP*GLWLLN
Trigger: GTTCAGCAACCACAAACCCAAAGGAGCATTGAGACC...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 90 bp AAATATATCTACACTTCTGGGCCGTGCAGGCAGAGGCCGGGCATCTaGCCCCACCGCGGGCCAGTCCTGTACGCTGACCTTCTTGTTGAA +
Preference number: 5 (lower is better)
Translates to: KYIYTSGPCRQRPGI*PHRGPVLYADLLVE
Trigger: TTCAACAAGAAGGTCAGCGTACAGGACTGGCCCGCGGTGGGGCCAGATGCCCGGCCTCTGCCTGCACGGCCCAGAAGTGTAGATATATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 90 bp CCCCACCGCGGGCCAGTCCTGTACGCTGACCTTCTTGTTGAAGGGTaGCTTTGTGAACACGTCGAAGTCCTCCTGCTCTGGAAAAGCATG +
Preference number: 5 (lower is better)
Translates to: PHRGPVLYADLLVEG*LCEHVEVLLLWKSM
Trigger: CATGCTTTTCCAGAGCAGGAGGACTTCGACGTGTTCACAAAGGCACCCTTCAACAAGAAGGTCAGCGTACAGGACTGGCCCGCGGTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 90 bp TGGAATCGGAAATGGTTAAAAACTCATTGCTGCTCTGGGAGTCTCTaGGGCCCACCTTCTTGTGTCTGCGGGCCCTCTCGGGCGTGCGGT +
Preference number: 5 (lower is better)
Translates to: WNRKWLKTHCCSGSL*GPPSCVCGPSRACG
Trigger: ACCGCACGCCCGAGAGGGCCCGCAGACACAAGAAGGTGGGCCGCAGAGACTCCCAGAGCAGCAATGAGTTTTTAACCATTTCCGATTCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGCCGCTGCCCTCCGACTaGGGCATCCGAGAGAACTTC +
Preference number: 5 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEPLPSD*GIRENF
Trigger: GAAGTTCTCTCGGATGCCCAAGTCGGAGGGCAGCGG...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACCCAGGAGCAGGGACTTaGACAGGCGTTGCTGAACTC +
Preference number: 5 (lower is better)
Translates to: CEALGSVPSTAKERTSGYPGAGT*TGVAEL
Trigger: GAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGG...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp ACAAGCCATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCCTTTGGGTTTGTGGTaGCTGAACTCCCCAGGAGCA +
Preference number: 5 (lower is better)
Translates to: TSHHHRAAHAFSGHAQGCPLGLW*LNSPGA
Trigger: TGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGG...ACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGGCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS CCA 90 bp CCACGCCAGGTTTGTCCCTGCGCAGGGAGCTCGTGTCTCCTCTCTTaGTCTTTGCCTGTTCACACTCTGAATCAGAGCTGTGTTTGTCGT +
Preference number: 5 (lower is better)
Translates to: PRQVCPCAGSSCLLS*SLPVHTLNQSCVCR
Trigger: ACGACAAACACAGCTCTGATTCAGAGTGTGAACAGGCAAAGACCAAGAGAGGAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 90 bp AAGGGCACGGCACCAAAGTCATCCATTCTCAATGTCTCTGCGCTGTaGAAGGACCCGTGTACTGAATTCTGTCGCGGCCTCCCAGGCAAA +
Preference number: 5 (lower is better)
Translates to: KGTAPKSSILNVSAL*KDPCTEFCRGLPGK
Trigger: TTTGCCTGGGAGGCCGCGACAGAATTCAGTACACGGGTCCTTCCACAGCGCAGAGACATTGAGAATGGATGACTTTGGTGCCGTGCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 90 bp CTGAACTCCCCAGGAGCAGGGACTTTGACAGGCGTTGCTGAACTCTaGATGGTCAGCACACTGGAAGTGGCAGCAGTGGAATTGGCCTTT +
Preference number: 5 (lower is better)
Translates to: LNSPGAGTLTGVAEL*MVSTLEVAAVELAF
Trigger: AAAGGCCAATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGGGGAGTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS TCA 90 bp GTGGTTGCTGAACTCCCCAGGAGCAGGGACTTTGACAGGCGTTGCTaGACTCTGAATGGTCAGCACACTGGAAGTGGCAGCAGTGGAATT +
Preference number: 5 (lower is better)
Translates to: VVAELPRSRDFDRRC*TLNGQHTGSGSSGI
Trigger: AATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGGGGAGTTCAGCAACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACGGTCTCAATGCTCCTTaGGGTTTGTGGTTGCTGAAC +
Preference number: 5 (lower is better)
Translates to: ITIVQPTLSLGMLKGVSDGLNAP*GLWLLN
Trigger: GTTCAGCAACCACAAACCCAAAGGAGCATTGAGACC...GTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp CAGCCCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGCAGTGATAGATTTTaGATTTGGAGAATGTTCCGT +
Preference number: 5 (lower is better)
Translates to: QPGSAWHGVACSCPHYPHCSDRF*IWRMFR
Trigger: ACGGAACATTCTCCAAATCAAAAATCTATCACTGCA...GTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGGGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CCGGTTCTGCGTGGCATGGTGTGGCCTGCTCCTGTCCACACTACCCCCACTGAGATCATCATGTCCCTTTaGTACTTGACCCCTAATTAC +
Preference number: 5 (lower is better)
Translates to: PVLRGMVWPAPVHTTPTEIIMSL*YLTPNY
Trigger: GTAATTAGGGGTCAAGTACAAAAGGGACATGATGAT...CTCAGTGGGGGTAGTGTGGACAGGAGCAGGCCACACCATGCCACGCAGAACCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGAGCCCAGATATCAGCCTaGGTGGTGATCGGTTTCCCT +
Preference number: 5 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRAQISA*VVIGFP
Trigger: AGGGAAACCGATCACCACCAAGGCTGATATCTGGGC...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp ATGGAGAGGAGCCAGAGTGGGCACCACCTTAGTATCTTCCATCAGGAAGATGAGCCTTTGGGTTTGTGGTaGCTGAACTCCCCAGGAGCA +
Preference number: 5 (lower is better)
Translates to: MERSQSGHHLSIFHQEDEPLGLW*LNSPGA
Trigger: TGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGG...CTCATCTTCCTGATGGAAGATACTAAGGTGGTGCCCACTCTGGCTCCTCTCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCGGGGCCACGCCAGGTTaGTCCCTGCGCAGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIGATPG*SLRREL
Trigger: GAGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCC...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 90 bp GTGTTATTGACATACATTCGCTTCAGTGCACATCGGATCCCACTGTaGGTCCGCACCAGGAAAACAGTGGAGAATCCACCTTCGGCCAGC +
Preference number: 5 (lower is better)
Translates to: VLLTYIRFSAHRIPL*VRTRKTVENPPSAS
Trigger: GCTGGCCGAAGGTGGATTCTCCACTGTTTTCCTGGTGCGGACTCACAGTGGGATCCGATGTGCACTGAAGCGAATGTATGTCAATAACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 90 bp AAGACTTCAGACCCATTTCCAGGTCTCAATGCTCCTTTGGGTTTGTaGTTGCTGAACTCCCCAGGAGCAGGGACTTTGACAGGCGTTGCT +
Preference number: 5 (lower is better)
Translates to: KTSDPFPGLNAPLGL*LLNSPGAGTLTGVA
Trigger: AGCAACGCCTGTCAAAGTCCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGCATTGAGACCTGGAAATGGGTCTGAAGTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp CCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACCCACACTATCTCGTACAGTGGAATTGGCCTTaGGTCTTTGTCTTGGTGCAA +
Preference number: 5 (lower is better)
Translates to: PTLSLGMLKGVSDPHYLVQWNWP*VFVLVQ
Trigger: TTGCACCAAGACAAAGACCAAAGGCCAATTCCACTG...TACGAGATAGTGTGGGTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACTCGCCCCGAGCCTGTTaGATCTTAGAAGGTCAAATT +
Preference number: 5 (lower is better)
Translates to: CEALGSVPSTAKERTSGYSPRAC*ILEGQI
Trigger: AATTTGACCTTCTAAGATCAAACAGGCTCGGGGCGA...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTATGTACGCTGACCTTCTaGTTGAAGGGTGCCTTTGTG +
Preference number: 5 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLCTLTF*LKGAFV
Trigger: CACAAAGGCACCCTTCAACAAGAAGGTCAGCGTACA...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 90 bp CTTTCTCAGCAACTGACCTGTTGGCACCGTAAGAAGAGTCCACTATaGTTCCAACCTGAGCTGGAAGTGACGAGGCGTAGGAAACTAAGG +
Preference number: 5 (lower is better)
Translates to: LSQQLTCWHRKKSPL*FQPELEVTRRRKLR
Trigger: CCTTAGTTTCCTACGCCTCGTCACTTCCAGCTCAGGTTGGAACCATAGTGGACTCTTCTTACGGTGCCAACAGGTCAGTTGCTGAGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp CCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCTACAGAGCCATTAGTAAGGGCCCAGATATCAGCCTaGGTGGTGATCGGTTTCCCT +
Preference number: 5 (lower is better)
Translates to: PHYLVLSVQERATEPLVRAQISA*VVIGFP
Trigger: AGGGAAACCGATCACCACCAAGGCTGATATCTGGGC...CCTTACTAATGGCTCTGTAGCTCTTTCCTGCACACTCAGTACGAGATAGTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACAAGCCATCACCATCGTGCAGCCCACGCTTTCTCTGGGCATGCTCAAGGGTGTTCGGCTCGGGAAGAGTaGATGGAAGAAAAGAATTAT +
Preference number: 5 (lower is better)
Translates to: TSHHHRAAHAFSGHAQGCSAREE*MEEKNY
Trigger: ATAATTCTTTTCTTCCATCAACTCTTCCCGAGCCGA...ACACCCTTGAGCATGCCCAGAGAAAGCGTGGGCTGCACGATGGTGATGGCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS CCA 90 bp GAACCTAATCAAGCAATGCACGTTGTGGGAGTAGCGAGAATTGTCTaGGATGGTGAAGCTGCCATCACAGATAGCAACCTGACTCTCACC +
Preference number: 5 (lower is better)
Translates to: EPNQAMHVVGVARIV*DGEAAITDSNLTLT
Trigger: GGTGAGAGTCAGGTTGCTATCTGTGATGGCAGCTTCACCATCCCAGACAATTCTCGCTACTCCCACAACGTGCATTGCTTGATTAGGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 90 bp GCGTTGCTGAACTCTGAATGGTCAGCACACTGGAAGTGGCAGCAGTaGAATTGGCCTTTGGTCTTTGTCTTGGTGCAATTGAGGTTTCTG +
Preference number: 5 (lower is better)
Translates to: ALLNSEWSAHWKWQQ*NWPLVFVLVQLRFL
Trigger: CAGAAACCTCAATTGCACCAAGACAAAGACCAAAGGCCAATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGATATGGGAGTCTTACATaGATGCAATCGTGCGACAGC +
Preference number: 5 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRYGSLT*MQSCDS
Trigger: GCTGTCGCACGATTGCATCAATGTAAGACTCCCATA...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CCCACGCTTTCTCTGGGCATGCTCAAGGGTGTCTCAGACCCACACTATCTCGTACGCAAAGTAGGATACTaGAAATATGTCAGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: PTLSLGMLKGVSDPHYLVRKVGY*KYVRSA
Trigger: TGCAGACCTGACATATTTCAAGTATCCTACTTTGCG...TACGAGATAGTGTGGGTCTGAGACACCCTTGAGCATGCCCAGAGAAAGCGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp TGCGAGGCCCTGGGTTCAGTTCCCAGCACCGCAAAAGAAAGAACAAGTGGCTACTCGGCTCGGGAAGAGTaGATGGAAGAAAAGAATTAT +
Preference number: 5 (lower is better)
Translates to: CEALGSVPSTAKERTSGYSAREE*MEEKNY
Trigger: ATAATTCTTTTCTTCCATCAACTCTTCCCGAGCCGA...GTAGCCACTTGTTCTTTCTTTTGCGGTGCTGGGAACTGAACCCAGGGCCTCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 90 bp ACAAATGTTGAGGTCGGGTGTGTTATTGACATACATTCGCTTCAGTaGACATCGGATCCCACTGTGAGTCCGCACCAGGAAAACAGTGGA +
Preference number: 5 (lower is better)
Translates to: TNVEVGCVIDIHSLQ*TSDPTVSPHQENSG
Trigger: TCCACTGTTTTCCTGGTGCGGACTCACAGTGGGATCCGATGTGCACTGAAGCGAATGTATGTCAATAACACACCCGACCTCAACATTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACACGTGCACCTTCTAACAATGCTTTAGTGAAGTACCCAGGCCTGGATGGCCGAAGGTCGGGTGTGTTATaGACATACATTCGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: TRAPSNNALVKYPGLDGRRSGVL*TYIRFS
Trigger: ACTGAAGCGAATGTATGTCAATAACACACCCGACCT...TCGGCCATCCAGGCCTGGGTACTTCACTAAAGCATTGTTAGAAGGTGCACGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp TCATGGTGGAAGCATTCATTCAGCCCCAAACGCTGCATCTGGGGTGTGCACCTATTTGTCTTGGTGCAATaGAGGTTTCTGTTGGTCCAA +
Preference number: 5 (lower is better)
Translates to: SWWKHSFSPKRCIWGVHLFVLVQ*RFLLVQ
Trigger: TTGGACCAACAGAAACCTCAATTGCACCAAGACAAA...TAGGTGCACACCCCAGATGCAGCGTTTGGGGCTGAATGAATGCTTCCACCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CTTCCCTACTTGAGCATTAACCTTCCATGTTTTGAAGATGTAATGAATTGCACACCGCTGCCCTCCGACTaGGGCATCCGAGAGAACTTC +
Preference number: 5 (lower is better)
Translates to: LPYLSINLPCFEDVMNCTPLPSD*GIRENF
Trigger: GAAGTTCTCTCGGATGCCCAAGTCGGAGGGCAGCGG...TGTGCAATTCATTACATCTTCAAAACATGGAAGGTTAATGCTCAAGTAGGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp AACAAAGCAGCCCCTTTCTGTCACCACTCAGTGAAGGACACAACAAGCCATCACAGGTCGGGTGTGTTATaGACATACATTCGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: NKAAPFCHHSVKDTTSHHRSGVL*TYIRFS
Trigger: ACTGAAGCGAATGTATGTCAATAACACACCCGACCT...GTGATGGCTTGTTGTGTCCTTCACTGAGTGGTGACAGAAAGGGGCTGCTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTTCCCTTTTACAAATGTaGAGGTCGGGTGTGTTATTG +
Preference number: 5 (lower is better)
Translates to: TLLGADLFSSYILSNLCASLLQM*RSGVLL
Trigger: CAATAACACACCCGACCTCAACATTTGTAAAAGGGA...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp GCTCAAGGGTGTCTCAGACCCACACTATCTCGTACTGAGTGTGCAGGAAAGAGCGGAAGAAAAGAATTATaGATGTTGGAGACCGGACAA +
Preference number: 5 (lower is better)
Translates to: AQGCLRPTLSRTECAGKSGRKEL*MLETGQ
Trigger: TTGTCCGGTCTCCAACATCAATAATTCTTTTCTTCC...GCTCTTTCCTGCACACTCAGTACGAGATAGTGTGGGTCTGAGACACCCTTGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS CCA 90 bp CGCAAAGTAGGATACTTGAAATATGTCAGGTCTGCACTCGGGGTCTaGTTCAAGCATGAACCTAATCAAGCAATGCACGTTGTGGGAGTA +
Preference number: 5 (lower is better)
Translates to: RKVGYLKYVRSALGV*FKHEPNQAMHVVGV
Trigger: TACTCCCACAACGTGCATTGCTTGATTAGGTTCATGCTTGAACCAGACCCCGAGTGCAGACCTGACATATTTCAAGTATCCTACTTTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACCCTGCTTGGAGCAGACCTTTTCTCCAGCTACATACTGAGCAACCTCTGTGCTCAATTGAGGTTTCTGTaGGTCCAATGGTATCTGTTA +
Preference number: 5 (lower is better)
Translates to: TLLGADLFSSYILSNLCAQLRFL*VQWYLL
Trigger: TAACAGATACCATTGGACCAACAGAAACCTCAATTG...AGCACAGAGGTTGCTCAGTATGTAGCTGGAGAAAAGGTCTGCTCCAAGCAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGCTCGTGTCTCCTCTCTaGGTCTTTGCCTGTTCACAC +
Preference number: 5 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRLVSPL*VFACSH
Trigger: GTGTGAACAGGCAAAGACCAAGAGAGGAGACACGAG...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp GATGTCAAACATGAGTGCCTTACAGGAATTCTTTACATAAATGTAAGCCATCTGCCAGGAGCAGGGACTTaGACAGGCGTTGCTGAACTC +
Preference number: 5 (lower is better)
Translates to: DVKHECLTGILYINVSHLPGAGT*TGVAEL
Trigger: GAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGG...CAGATGGCTTACATTTATGTAAAGAATTCCTGTAAGGCACTCATGTTTGACATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTACACTGGCCCTGTCTTaGCCATCAGTCAGCGCGACG +
Preference number: 5 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFTLALS*PSVSAT
Trigger: CGTCGCGCTGACTGATGGCAAAGACAGGGCCAGTGT...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp GTACAGGGGAAGCAACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGCAGTGGAATTGGCCTTaGGTCTTTGTCTTGGTGCAA +
Preference number: 5 (lower is better)
Translates to: VQGKQLNSISNVSQLHLRQWNWP*VFVLVQ
Trigger: TTGCACCAAGACAAAGACCAAAGGCCAATTCCACTG...CCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGTTGCTTCCCCTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp TGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCAACTGTGGCAGCAGTGGAATaGGCCTTTGGTCTTTGTCTT +
Preference number: 5 (lower is better)
Translates to: CTKRIFDTTSNSLWPCSTVAAVE*AFGLCL
Trigger: AAGACAAAGACCAAAGGCCAATTCCACTGCTGCCAC...AGTTGAGCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTACGCTGACCTTCTTGTaGAAGGGTGCCTTTGTGAAC +
Preference number: 5 (lower is better)
Translates to: PQKKEQVATTPSINRMTFTLTFL*KGAFVN
Trigger: GTTCACAAAGGCACCCTTCAACAAGAAGGTCAGCGT...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp GCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTTCACCGGACAATCCTTTTaGGCGAATTTAAACGCAAAG +
Preference number: 5 (lower is better)
Translates to: ALILQTSSNLHSSKRDHFTGQSF*ANLNAK
Trigger: CTTTGCGTTTAAATTCGCCAAAAAGGATTGTCCGGT...GAAATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCATGGTTAAAAACTCATaGCTGCTCTGGGAGTCTCTG +
Preference number: 5 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIMVKNS*LLWESL
Trigger: CAGAGACTCCCAGAGCAGCAATGAGTTTTTAACCAT...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CTTCCCTACTTGAGCATTAACCTTCCATGTTTTGAAGATGTAATGAATTGCACATATGGGAGTCTTACATaGATGCAATCGTGCGACAGC +
Preference number: 5 (lower is better)
Translates to: LPYLSINLPCFEDVMNCTYGSLT*MQSCDS
Trigger: GCTGTCGCACGATTGCATCAATGTAAGACTCCCATA...TGTGCAATTCATTACATCTTCAAAACATGGAAGGTTAATGCTCAAGTAGGGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCACCGGACAATCCTTTTaGGCGAATTTAAACGCAAAG +
Preference number: 5 (lower is better)
Translates to: ASGTLISYSQLRRPHQFITGQSF*ANLNAK
Trigger: CTTTGCGTTTAAATTCGCCAAAAAGGATTGTCCGGT...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp TGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCTCAACTTTTGTCTTGGTGCAATaGAGGTTTCTGTTGGTCCAA +
Preference number: 5 (lower is better)
Translates to: CTKRIFDTTSNSLWPCSTFVLVQ*RFLLVQ
Trigger: TTGGACCAACAGAAACCTCAATTGCACCAAGACAAA...AGTTGAGCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTGTGGCAGCAGTGGAATaGGCCTTTGGTCTTTGTCTT +
Preference number: 5 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFVAAVE*AFGLCL
Trigger: AAGACAAAGACCAAAGGCCAATTCCACTGCTGCCAC...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CTCAAGTGCACAAAAAGAATTTTTGACACCACCTCTAACAGTCTTTGGCCTTGCAAAGAATTATTGATGTaGGAGACCGGACAATCCTTT +
Preference number: 5 (lower is better)
Translates to: LKCTKRIFDTTSNSLWPCKELLM*ETGQSF
Trigger: AAAGGATTGTCCGGTCTCCAACATCAATAATTCTTT...GCAAGGCCAAAGACTGTTAGAGGTGGTGTCAAAAATTCTTTTTGTGCACTTGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp CTTGCCCTAATTCTGCAAACCTCCTCAAACCTACACTCTTCCAAAAGAGATCATTCAAGTGTCCCTTACTaGATCTTAGAAGGTCAAATT +
Preference number: 5 (lower is better)
Translates to: LALILQTSSNLHSSKRDHSSVPY*ILEGQI
Trigger: AATTTGACCTTCTAAGATCAAGTAAGGGACACTTGA...ATGATCTCTTTTGGAAGAGTGTAGGTTTGAGGAGGTTTGCAGAATTAGGGCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp GCAAGTGGAACTCTGATTTCATATTCACAACTCAGAAGACCACATCAGTTCATCAAAGAATTATTGATGTaGGAGACCGGACAATCCTTT +
Preference number: 5 (lower is better)
Translates to: ASGTLISYSQLRRPHQFIKELLM*ETGQSF
Trigger: AAAGGATTGTCCGGTCTCCAACATCAATAATTCTTT...GATGAACTGATGTGGTCTTCTGAGTTGTGAATATGAAATCAGAGTTCCACTTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CCGCAAAAGAAAGAACAAGTGGCTACTACTCCTTCTATTAATAGGATGACCTTTGGAAGAAAAGAATTATaGATGTTGGAGACCGGACAA +
Preference number: 5 (lower is better)
Translates to: PQKKEQVATTPSINRMTFGRKEL*MLETGQ
Trigger: TTGTCCGGTCTCCAACATCAATAATTCTTTTCTTCC...AAAGGTCATCCTATTAATAGAAGGAGTAGTAGCCACTTGTTCTTTCTTTTGCGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTCGCAAAGTAGGATACTaGAAATATGTCAGGTCTGCA +
Preference number: 5 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFRKVGY*KYVRSA
Trigger: TGCAGACCTGACATATTTCAAGTATCCTACTTTGCG...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS-3UTR CAA 90 bp CATTTCTTAGGCCCTTCTCTTTATATGCAAAACAGAGATGCTCAGTGTATATGTCAATTGAGGTTTCTGTaGGTCCAATGGTATCTGTTA +
Preference number: 5 (lower is better)
Translates to: HFLGPSLYMQNRDAQCICQLRFL*VQWYLL
Trigger: TAACAGATACCATTGGACCAACAGAAACCTCAATTG...ACATATACACTGAGCATCTCTGTTTTGCATATAAAGAGAAGGGCCTAAGAAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112974.6
CDS-3UTR CAA 90 bp ACTGAATTCTATTTCAAATGTCTCCCAGCTACATTTGAGGGCTTAAGTTACTTTCTTGAGCCTCCATTTTaGGTAAGGTTTGCAGTGATA +
Preference number: 5 (lower is better)
Translates to: TEFYFKCLPATFEGLSYFLEPPF*VRFAVI
Trigger: TATCACTGCAAACCTTACCAAAAATGGAGGCTCAAG...AAAGTAACTTAAGCCCTCAAATGTAGCTGGGAGACATTTGAAATAGAATTCAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CAA 90 bp CCTGGTAGCGGCCGACGGCGAACACCCGGACCCCCATGGACGAGCTaGCGAAGCCGCCGCCGAGCCCGCCGCCCGCGGCCCCGCCAGCCG +
Preference number: 6 (lower is better)
Translates to: PGSGRRRTPGPPWTS*RSRRRARRPRPRQP
Trigger: CGGCTGGCGGGGCCGCGGGCGGCGGGCTCGGCGGCGGCTTCGCAAGCTCGTCCATGGGGGTCCGGGTGTTCGCCGTCGGCCGCTACCAGG
80% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS GCA 72 bp CGCCCGCGGCCCCGCCAGCCGCCGCCCCGCCGCCGCTaGCCTCCGACTTGGGCATCCGAGAGAACTTCTTCA +
Preference number: 6 (lower is better)
Translates to: RPRPRQPPPRRR*PPTWASERTSS
Trigger: TGAAGAAGTTCTCTCGGATGCCCAAGTCGGAGGGCAGCGGCGGCGGGGCGGCGGCTGGCGGGGCCGCGGGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 72 bp CCTGGTAGCGGCCGACGGCGAACACCCGGACCCCCATaGACGAGCTTGCGAAGCCGCCGCCGAGCCCGCCGC +
Preference number: 6 (lower is better)
Translates to: PGSGRRRTPGPP*TSLRSRRRARR
Trigger: GCGGCGGGCTCGGCGGCGGCTTCGCAAGCTCGTCCATGGGGGTCCGGGTGTTCGCCGTCGGCCGCTACCAGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 72 bp AGCAGGCGAGCGGGCCGGGGTCAGGAGGGCTGTGTCTaGGGCCACGCCAGGTTTGTCCCTGCGCAGGGAGCT +
Preference number: 6 (lower is better)
Translates to: SRRAGRGQEGCV*GHARFVPAQGA
Trigger: AGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCCAGACACAGCCCTCCTGACCCCGGCCCGCTCGCCTGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CAA 90 bp GAGCGGGCCGGGGTCAGGAGGGCTGTGTCTGGGGCCACGCCAGGTTaGTCCCTGCGCAGGGAGCTCGTGTCTCCTCTCTTGGTCTTTGCC +
Preference number: 6 (lower is better)
Translates to: ERAGVRRAVSGATPG*SLRRELVSPLLVFA
Trigger: GGCAAAGACCAAGAGAGGAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCCAGACACAGCCCTCCTGACCCCGGCCCGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 72 bp TGGAGAATCCACCTTCGGCCAGCGACTCCTCCAGGGTaGCCTGGTAGCGGCCGACGGCGAACACCCGGACCC +
Preference number: 6 (lower is better)
Translates to: WRIHLRPATPPG*PGSGRRRTPGP
Trigger: GGGTCCGGGTGTTCGCCGTCGGCCGCTACCAGGTCACCCTGGAGGAGTCGCTGGCCGAAGGTGGATTCTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp GGGGTCAGGAGGGCTGTGTCTGGGGCCACGCCAGGTTaGTCCCTGCGCAGGGAGCTCGTGTCTCCTCTCTTG +
Preference number: 6 (lower is better)
Translates to: GVRRAVSGATPG*SLRRELVSPLL
Trigger: CAAGAGAGGAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCCAGACACAGCCCTCCTGACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 72 bp GCATGCTGGGACAGGTTCTTCCCATCCCCTCTGTGCTaGAGGCTCTGCGGAGCAGGCGCTGCAAAGAAGGGA +
Preference number: 6 (lower is better)
Translates to: ACWDRFFPSPLC*RLCGAGAAKKG
Trigger: TCCCTTCTTTGCAGCGCCTGCTCCGCAGAGCCTGCAGCACAGAGGGGATGGGAAGAACCTGTCCCAGCATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 72 bp AAAGCATGCTGGGACAGGTTCTTCCCATCCCCTCTGTaGTGCAGGCTCTGCGGAGCAGGCGCTGCAAAGAAG +
Preference number: 6 (lower is better)
Translates to: KACWDRFFPSPL*CRLCGAGAAKK
Trigger: CTTCTTTGCAGCGCCTGCTCCGCAGAGCCTGCAGCACAGAGGGGATGGGAAGAACCTGTCCCAGCATGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 72 bp GGGGCTGGTGCCACAAGTCTGGAGGATGAAAGGGCTTaGCACCGAATGGGTCCAGCAGACTCTCGTCAGATG +
Preference number: 6 (lower is better)
Translates to: GAGATSLEDERA*HRMGPADSRQM
Trigger: CATCTGACGAGAGTCTGCTGGACCCATTCGGTGCCAAGCCCTTTCATCCTCCAGACTTGTGGCACCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 72 bp CTTGGCACCGAATGGGTCCAGCAGACTCTCGTCAGATaGCAGGACACTGGCCCTGTCTTTGCCATCAGTCAG +
Preference number: 6 (lower is better)
Translates to: LGTEWVQQTLVR*QDTGPVFAISQ
Trigger: CTGACTGATGGCAAAGACAGGGCCAGTGTCCTGCCATCTGACGAGAGTCTGCTGGACCCATTCGGTGCCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 72 bp GAACTCCCCAGGAGCAGGGACTTTGACAGGCGTTGCTaGACTCTGAATGGTCAGCACACTGGAAGTGGCAGC +
Preference number: 6 (lower is better)
Translates to: ELPRSRDFDRRC*TLNGQHTGSGS
Trigger: GCTGCCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGGGGAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS GCA 72 bp GTGAACACGTCGAAGTCCTCCTGCTCTGGAAAAGCATaGTGGGACAGGTTCTTCCCATCCCCTCTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: VNTSKSSCSGKA*WDRFFPSPLCC
Trigger: GCAGCACAGAGGGGATGGGAAGAACCTGTCCCAGCATGCTTTTCCAGAGCAGGAGGACTTCGACGTGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS GCA 72 bp GGGCCAGTCCTGTACGCTGACCTTCTTGTTGAAGGGTaGCTTTGTGAACACGTCGAAGTCCTCCTGCTCTGG +
Preference number: 6 (lower is better)
Translates to: GPVLYADLLVEG*LCEHVEVLLLW
Trigger: CCAGAGCAGGAGGACTTCGACGTGTTCACAAAGGCACCCTTCAACAAGAAGGTCAGCGTACAGGACTGGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 72 bp CCAGGAGCAGGGACTTTGACAGGCGTTGCTGAACTCTaGATGGTCAGCACACTGGAAGTGGCAGCAGTGGAA +
Preference number: 6 (lower is better)
Translates to: PGAGTLTGVAEL*MVSTLEVAAVE
Trigger: TTCCACTGCTGCCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS TCA 72 bp GTAAGATACTCGGGTGATACCTGCTGTGCTGGCTGCTaGTGGCGAGCTAGCATCTGCTGCTGCAAGAAAGCC +
Preference number: 6 (lower is better)
Translates to: VRYSGDTCCAGC*WRASICCCKKA
Trigger: GGCTTTCTTGCAGCAGCAGATGCTAGCTCGCCATCAGCAGCCAGCACAGCAGGTATCACCCGAGTATCTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS TCA 72 bp TGGCGAGCTAGCATCTGCTGCTGCAAGAAAGCCTGCTaGTACTGCTGCATCATGGCAGGATACTGGGATGCA +
Preference number: 6 (lower is better)
Translates to: WRASICCCKKAC*YCCIMAGYWDA
Trigger: TGCATCCCAGTATCCTGCCATGATGCAGCAGTATCAGCAGGCTTTCTTGCAGCAGCAGATGCTAGCTCGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 72 bp CAACTGACCTGTTGGCACCGTAAGAAGAGTCCACTATaGTTCCAACCTGAGCTGGAAGTGACGAGGCGTAGG +
Preference number: 6 (lower is better)
Translates to: QLTCWHRKKSPL*FQPELEVTRRR
Trigger: CCTACGCCTCGTCACTTCCAGCTCAGGTTGGAACCATAGTGGACTCTTCTTACGGTGCCAACAGGTCAGTTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp CCATTTCCAGGTCTCAATGCTCCTTTGGGTTTGTGGTaGCTGAACTCCCCAGGAGCAGGGACTTTGACAGGC +
Preference number: 6 (lower is better)
Translates to: PFPGLNAPLGLW*LNSPGAGTLTG
Trigger: GCCTGTCAAAGTCCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGCATTGAGACCTGGAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS GCA 72 bp GAGGTCGGGTGTGTTATTGACATACATTCGCTTCAGTaGACATCGGATCCCACTGTGAGTCCGCACCAGGAA +
Preference number: 6 (lower is better)
Translates to: EVGCVIDIHSLQ*TSDPTVSPHQE
Trigger: TTCCTGGTGCGGACTCACAGTGGGATCCGATGTGCACTGAAGCGAATGTATGTCAATAACACACCCGACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS GCA 72 bp TTGAAGGGTGCCTTTGTGAACACGTCGAAGTCCTCCTaGTCTGGAAAAGCATGCTGGGACAGGTTCTTCCCA +
Preference number: 6 (lower is better)
Translates to: LKGAFVNTSKSS*SGKACWDRFFP
Trigger: TGGGAAGAACCTGTCCCAGCATGCTTTTCCAGAGCAGGAGGACTTCGACGTGTTCACAAAGGCACCCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 72 bp GACCCATTTCCAGGTCTCAATGCTCCTTTGGGTTTGTaGTTGCTGAACTCCCCAGGAGCAGGGACTTTGACA +
Preference number: 6 (lower is better)
Translates to: DPFPGLNAPLGL*LLNSPGAGTLT
Trigger: TGTCAAAGTCCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGCATTGAGACCTGGAAATGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp AAGACTTCAGACCCATTTCCAGGTCTCAATGCTCCTTaGGGTTTGTGGTTGCTGAACTCCCCAGGAGCAGGG +
Preference number: 6 (lower is better)
Translates to: KTSDPFPGLNAP*GLWLLNSPGAG
Trigger: CCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGCATTGAGACCTGGAAATGGGTCTGAAGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp ACTTCAGACCCATTTCCAGGTCTCAATGCTCCTTTGGGTTTGTGGTaGCTGAACTCCCCAGGAGCAGGGACTTTGACAGGCGTTGCTGAA +
Preference number: 6 (lower is better)
Translates to: TSDPFPGLNAPLGLW*LNSPGAGTLTGVAE
Trigger: TTCAGCAACGCCTGTCAAAGTCCCTGCTCCTGGGGAGTTCAGCAACCACAAACCCAAAGGAGCATTGAGACCTGGAAATGGGTCTGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp CTGGCCCTGTCTTTGCCATCAGTCAGCGCGACGCTGATGTTCTCCTaGGAATCGGAAATGGTTAAAAACTCATTGCTGCTCTGGGAGTCT +
Preference number: 6 (lower is better)
Translates to: LALSLPSVSATLMFS*ESEMVKNSLLLWES
Trigger: AGACTCCCAGAGCAGCAATGAGTTTTTAACCATTTCCGATTCCAAGGAGAACATCAGCGTCGCGCTGACTGATGGCAAAGACAGGGCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 72 bp ACATACATTCGCTTCAGTGCACATCGGATCCCACTGTaGGTCCGCACCAGGAAAACAGTGGAGAATCCACCT +
Preference number: 6 (lower is better)
Translates to: TYIRFSAHRIPL*VRTRKTVENPP
Trigger: AGGTGGATTCTCCACTGTTTTCCTGGTGCGGACTCACAGTGGGATCCGATGTGCACTGAAGCGAATGTATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 72 bp TTGGAATCGGAAATGGTTAAAAACTCATTGCTGCTCTaGGAGTCTCTGCGGCCCACCTTCTTGTGTCTGCGG +
Preference number: 6 (lower is better)
Translates to: LESEMVKNSLLL*ESLRPTFLCLR
Trigger: CCGCAGACACAAGAAGGTGGGCCGCAGAGACTCCCAGAGCAGCAATGAGTTTTTAACCATTTCCGATTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CCA 72 bp AACTCTGAATGGTCAGCACACTGGAAGTGGCAGCAGTaGAATTGGCCTTTGGTCTTTGTCTTGGTGCAATTG +
Preference number: 6 (lower is better)
Translates to: NSEWSAHWKWQQ*NWPLVFVLVQL
Trigger: CAATTGCACCAAGACAAAGACCAAAGGCCAATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTCAGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp GCACACTGGAAGTGGCAGCAGTGGAATTGGCCTTTGGTCTTTGTCTaGGTGCAATTGAGGTTTCTGTTGGTCCAATGGTATCTGTTATTC +
Preference number: 6 (lower is better)
Translates to: AHWKWQQWNWPLVFV*VQLRFLLVQWYLLF
Trigger: GAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAAGACCAAAGGCCAATTCCACTGCTGCCACTTCCAGTGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp TCTTTGCCATCAGTCAGCGCGACGCTGATGTTCTCCTaGGAATCGGAAATGGTTAAAAACTCATTGCTGCTC +
Preference number: 6 (lower is better)
Translates to: SLPSVSATLMFS*ESEMVKNSLLL
Trigger: GAGCAGCAATGAGTTTTTAACCATTTCCGATTCCAAGGAGAACATCAGCGTCGCGCTGACTGATGGCAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS TCA 72 bp TCTGGGATGGTGAAGCTGCCATCACAGATAGCAACCTaGCTCTCACCAAAAGGAAGAGTGAAGAAACAAAGT +
Preference number: 6 (lower is better)
Translates to: SGMVKLPSQIAT*LSPKGRVKKQS
Trigger: ACTTTGTTTCTTCACTCTTCCTTTTGGTGAGAGTCAGGTTGCTATCTGTGATGGCAGCTTCACCATCCCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS TCA 72 bp ATTACGGGATTCTCGGAGGTTTTCTTTCCGGCTCGCTaGTCTTTACATAGTGGACTTGAGCCTCCATTTTTG +
Preference number: 6 (lower is better)
Translates to: ITGFSEVFFPAR*SLHSGLEPPFL
Trigger: CAAAAATGGAGGCTCAAGTCCACTATGTAAAGATCAGCGAGCCGGAAAGAAAACCTCCGAGAATCCCGTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035635.10
CDS CAA 90 bp GACCGGACAATCCTTTTTGGCGAATTTAAACGCAAAGTAGGATACTaGAAATATGTCAGGTCTGCACTCGGGGTCTGGTTCAAGCATGAA +
Preference number: 6 (lower is better)
Translates to: DRTILFGEFKRKVGY*KYVRSALGVWFKHE
Trigger: TTCATGCTTGAACCAGACCCCGAGTGCAGACCTGACATATTTCAAGTATCCTACTTTGCGTTTAAATTCGCCAAAAAGGATTGTCCGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp AAGTGGCAGCAGTGGAATTGGCCTTTGGTCTTTGTCTTGGTGCAATaGAGGTTTCTGTTGGTCCAATGGTATCTGTTATTCTGGCTTTCA +
Preference number: 6 (lower is better)
Translates to: KWQQWNWPLVFVLVQ*RFLLVQWYLLFWLS
Trigger: TGAAAGCCAGAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAAGACCAAAGGCCAATTCCACTGCTGCCACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp TGGAATTGGCCTTTGGTCTTTGTCTTGGTGCAATTGAGGTTTCTGTaGGTCCAATGGTATCTGTTATTCTGGCTTTCATCTGGCTTTTCC +
Preference number: 6 (lower is better)
Translates to: WNWPLVFVLVQLRFL*VQWYLLFWLSSGFS
Trigger: GGAAAAGCCAGATGAAAGCCAGAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAAGACCAAAGGCCAATTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS TCA 72 bp ATTTGTAAAATTTGCAACTGCCTCTTTCTCAGCAACTaGCCTGTTGGCACCGTAAGAAGAGTCCACTATGGT +
Preference number: 6 (lower is better)
Translates to: ICKICNCLFLSN*PVGTVRRVHYG
Trigger: ACCATAGTGGACTCTTCTTACGGTGCCAACAGGTCAGTTGCTGAGAAAGAGGCAGTTGCAAATTTTACAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS TCA 72 bp CTTGGAAAAATTGTCTTCTCCAAAAGGATTCCAGCCTaGCATGTCAGGAGGGTGACTAATGGTCTTCTGATT +
Preference number: 6 (lower is better)
Translates to: LGKIVFSKRIPA*HVRRVTNGLLI
Trigger: AATCAGAAGACCATTAGTCACCCTCCTGACATGTCAGGCTGGAATCCTTTTGGAGAAGACAATTTTTCCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp ATTTCCCTTTTACAAATGTTGAGGTCGGGTGTGTTATaGACATACATTCGCTTCAGTGCACATCGGATCCCA +
Preference number: 6 (lower is better)
Translates to: ISLLQMLRSGVL*TYIRFSAHRIP
Trigger: TGGGATCCGATGTGCACTGAAGCGAATGTATGTCAATAACACACCCGACCTCAACATTTGTAAAAGGGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp ATCCTTTTTGGCGAATTTAAACGCAAAGTAGGATACTaGAAATATGTCAGGTCTGCACTCGGGGTCTGGTTC +
Preference number: 6 (lower is better)
Translates to: ILFGEFKRKVGY*KYVRSALGVWF
Trigger: GAACCAGACCCCGAGTGCAGACCTGACATATTTCAAGTATCCTACTTTGCGTTTAAATTCGCCAAAAAGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp CAGTGGAATTGGCCTTTGGTCTTTGTCTTGGTGCAATaGAGGTTTCTGTTGGTCCAATGGTATCTGTTATTC +
Preference number: 6 (lower is better)
Translates to: QWNWPLVFVLVQ*RFLLVQWYLLF
Trigger: GAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAAGACCAAAGGCCAATTCCACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp CTGAGTGCATTAGAAACTGTTGCTGAAGTATATGCTGCTGGTGCATaGCATGCTGATACTGCTGCAAGTAAGCATTTTGAAGTAGTTGCT +
Preference number: 6 (lower is better)
Translates to: LSALETVAEVYAAGA*HADTAASKHFEVVA
Trigger: AGCAACTACTTCAAAATGCTTACTTGCAGCAGTATCAGCATGCAATGCACCAGCAGCATATACTTCAGCAACAGTTTCTAATGCACTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CCA 72 bp TTTGTCTTGGTGCAATTGAGGTTTCTGTTGGTCCAATaGTATCTGTTATTCTGGCTTTCATCTGGCTTTTCC +
Preference number: 6 (lower is better)
Translates to: FVLVQLRFLLVQ*YLLFWLSSGFS
Trigger: GGAAAAGCCAGATGAAAGCCAGAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp CCTTTGGTCTTTGTCTTGGTGCAATTGAGGTTTCTGTaGGTCCAATGGTATCTGTTATTCTGGCTTTCATCT +
Preference number: 6 (lower is better)
Translates to: PLVFVLVQLRFL*VQWYLLFWLSS
Trigger: AGATGAAAGCCAGAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAAGACCAAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 90 bp TGGCCAGATAACTCTTTCATAATCGTGATTTCCCTTTTACAAATGTaGAGGTCGGGTGTGTTATTGACATACATTCGCTTCAGTGCACAT +
Preference number: 6 (lower is better)
Translates to: WPDNSFIIVISLLQM*RSGVLLTYIRFSAH
Trigger: ATGTGCACTGAAGCGAATGTATGTCAATAACACACCCGACCTCAACATTTGTAAAAGGGAAATCACGATTATGAAAGAGTTATCTGGCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp TTAGAAACTGTTGCTGAAGTATATGCTGCTGGTGCATaGCATGCTGATACTGCTGCAAGTAAGCATTTTGAA +
Preference number: 6 (lower is better)
Translates to: LETVAEVYAAGA*HADTAASKHFE
Trigger: TTCAAAATGCTTACTTGCAGCAGTATCAGCATGCAATGCACCAGCAGCATATACTTCAGCAACAGTTTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp TCGGGAAGAGTTGATGGAAGAAAAGAATTATTGATGTaGGAGACCGGACAATCCTTTTTGGCGAATTTAAAC +
Preference number: 6 (lower is better)
Translates to: SGRVDGRKELLM*ETGQSFLANLN
Trigger: GTTTAAATTCGCCAAAAAGGATTGTCCGGTCTCCAACATCAATAATTCTTTTCTTCCATCAACTCTTCCCGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6
CDS CAA 72 bp AACTCTTTCATAATCGTGATTTCCCTTTTACAAATGTaGAGGTCGGGTGTGTTATTGACATACATTCGCTTC +
Preference number: 6 (lower is better)
Translates to: NSFIIVISLLQM*RSGVLLTYIRF
Trigger: GAAGCGAATGTATGTCAATAACACACCCGACCTCAACATTTGTAAAAGGGAAATCACGATTATGAAAGAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035635.10
ENSMUST00000112974.6