Pregenerated sensors for BLVRA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001999Ensembl transcript IDs: ENSMUST00000002064.15, ENSMUST00000110389.10, ENSMUST00000135529.8, ENSMUST00000142737.3
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AGACACACAGGAAGTAGAAGGGAGGGTCATTCAGTTTaGAGGAGCTTTTTGGTGATGGGGATTCATTCTGGG | + |
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Preference number: 3 (lower is better) Translates to: RHTGSRREGHSV*RSFLVMGIHSG Trigger: CCCAGAATGAATCCCCATCACCAAAAAGCTCCTTCAAACTGAATGACCCTCCCTTCTACTTCCTGTGTGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR GCA 90 bp | GCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGAAGCTAGCTCCCACAGCTCCTaGGCTGCCGCAAATGACAAT | + |
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Preference number: 4 (lower is better) Translates to: AKVLIRPNPGPVSEVSEASSHSS*AAANDN Trigger: ATTGTCATTTGCGGCAGCGCAGGAGCTGTGGGAGCT...AGCTTCAGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | GTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGACTCTCCCTTTCTGTaGAGCCAGCTCCCACAGCTC | + |
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Preference number: 4 (lower is better) Translates to: VRAKVLIRPNPGPVSEVSDSPFL*SQLPQL Trigger: GAGCTGTGGGAGCTGGCTGCACAGAAAGGGAGAGTC...AGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | AAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGAAGCTTCCCCAGGCAATGCAGGATaGGCTTCTTCTCAGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: KVLIRPNPGPVSEVSEASPGNAG*ASSQQP Trigger: TGGCTGCTGAGAAGAAGCGCATCCTGCATTGCCTGG...GGAAGCTTCAGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | AGAGACACACAGGAAGTAGAAGGGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGCCACGAGGACATGCTTaGCAGCCTGAAGAAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: RDTQEVEGRVIQFEGAFWPRGHA*QPEETA Trigger: GGCAGTTTCTTCAGGCTGGCAAGCATGTCCTCGTGG...CCAAAAAGCTCCTTCAAACTGAATGACCCTCCCTTCTACTTCCTGTGTGTCTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR GCA 90 bp | GGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGTGATGGGGATTCATTCTGGGATAGCTCCCACAGCTCCTaGGCTGCCGCAAATGACAAT | + |
|
Preference number: 4 (lower is better) Translates to: GGSFSLKELFGDGDSFWDSSHSS*AAANDN Trigger: ATTGTCATTTGCGGCAGCGCAGGAGCTGTGGGAGCT...ATCCCAGAATGAATCCCCATCACCAAAAAGCTCCTTCAAACTGAATGACCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR CCA 90 bp | GGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGTGATGGGGATTCATTCTGGGATGCGACATCAACCTCTTaGCTGCGGAGAGCATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: GGSFSLKELFGDGDSFWDATSTS*LRRASS Trigger: GGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGC...ATCCCAGAATGAATCCCCATCACCAAAAAGCTCCTTCAAACTGAATGACCCTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR CCA 90 bp | GCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGAAGCTTCCTCTGCAGAGACCTaGCCCAAGAGCTTCTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: AKVLIRPNPGPVSEVSEASSAET*PKSFWI Trigger: TATCCAGAAGCTCTTGGGCCAGGTCTCTGCAGAGGA...AGCTTCAGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR TCA 90 bp | AGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGAAGGCGAGAAATGCCACTaGACGCAGGGAAGCCAAATT | + |
|
Preference number: 4 (lower is better) Translates to: RAKVLIRPNPGPVSEVSEGEKCH*TQGSQI Trigger: AATTTGGCTTCCCTGCGTTCAGTGGCATTTCTCGCC...TTCAGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | AAGGGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGTGATGGGGATTCATTCTGGTCACAGAGCCAGCTCTaGCAACACCAACCACTACCA | + |
|
Preference number: 4 (lower is better) Translates to: KGGSFSLKELFGDGDSFWSQSQL*QHQPLP Trigger: TGGTAGTGGTTGGTGTTGGCAGAGCTGGCTCTGTGA...CCAGAATGAATCCCCATCACCAAAAAGCTCCTTCAAACTGAATGACCCTCCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR GCA 90 bp | GGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGTGATGGGGATTCATTCTGGGATGGAACGACAGCTGGGTaGTTCCTCTACTTCTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: GGSFSLKELFGDGDSFWDGTTAG*FLYFSE Trigger: CTCAGAGAAGTAGAGGAAGCACCCAGCTGTCGTTCC...ATCCCAGAATGAATCCCCATCACCAAAAAGCTCCTTCAAACTGAATGACCCTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR GCA 90 bp | ATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCACAGAGCCAGCTCTaGCAACACCAACCACTACCA | + |
|
Preference number: 4 (lower is better) Translates to: IVRAKVLIRPNPGPVSEVSQSQL*QHQPLP Trigger: TGGTAGTGGTTGGTGTTGGCAGAGCTGGCTCTGTGA...TACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | AGAGACACACAGGAAGTAGAAGGGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGCATCAACCTCTTGGCTaGGGAGAGCATCTTCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: RDTQEVEGRVIQFEGAFWHQPLG*GEHLPK Trigger: CTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATG...CCAAAAAGCTCCTTCAAACTGAATGACCCTCCCTTCTACTTCCTGTGTGTCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR GCA 90 bp | TTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGCCACGAGGACATGCTTaGCAGCCTGAAGAAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: FIVRAKVLIRPNPGPVSEPRGHA*QPEETA Trigger: GGCAGTTTCTTCAGGCTGGCAAGCATGTCCTCGTGG...CTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | GCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGAAGCTATCAAGAGTTCGATGTaGTCCTCATGCAGGACTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AKVLIRPNPGPVSEVSEAIKSSM*SSCRTL Trigger: GAGAGTCCTGCATGAGGAGCACATCGAACTCTTGAT...AGCTTCAGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | ATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTACATCAACCTCTTGGCTaGGGAGAGCATCTTCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: IVRAKVLIRPNPGPVSEVHQPLG*GEHLPK Trigger: CTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATG...TACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CCA 90 bp | GAGTATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTGCGACATCAACCTCTTaGCTGCGGAGAGCATCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: EYFIVRAKVLIRPNPGPVATSTS*LRRASS Trigger: GGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGC...AACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR TCA 90 bp | GTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTCCAAGGACCCAGATTTaGAGTGGATGCTTATATGTC | + |
|
Preference number: 4 (lower is better) Translates to: VRAKVLIRPNPGPVSEVSPRTQI*SGCLYV Trigger: GACATATAAGCATCCACTTCAAATCTGGGTCCTTGG...AGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR TCA 90 bp | AGAGACACACAGGAAGTAGAAGGGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGCTTCCTCTACTTCTCTaGGCTAGAAGGTTTTCAACC | + |
|
Preference number: 4 (lower is better) Translates to: RDTQEVEGRVIQFEGAFWLPLLL*ARRFST Trigger: GGTTGAAAACCTTCTAGCTCAGAGAAGTAGAGGAAG...CCAAAAAGCTCCTTCAAACTGAATGACCCTCCCTTCTACTTCCTGTGTGTCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR GCA 90 bp | GTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGGCTGGAACTCTCAGTaGAAATATAGGCGACATCAA | + |
|
Preference number: 4 (lower is better) Translates to: VRAKVLIRPNPGPVSEVSGWNSQ*KYRRHQ Trigger: TTGATGTCGCCTATATTTGCACTGAGAGTTCCAGCC...AGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | TATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGCCAGCTCCAGGCAATaGAGGATGCGCTTCTTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: YFIVRAKVLIRPNPGPVSASSRQ*RMRFFS Trigger: TGAGAAGAAGCGCATCCTGCATTGCCTGGAGCTGGC...TGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CCA 90 bp | CCAGAGTATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCAATGGACTTTTGTTCTaGGTCTCGAGCTGCACGGTC | + |
|
Preference number: 4 (lower is better) Translates to: PEYFIVRAKVLIRPNPGPNGLLF*VSSCTV Trigger: GACCGTGCAGCTCGAGACCCAGAACAAAAGTCCATT...GGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATACTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CCA 90 bp | GGAGGGTCATTCAGTTTGAAGGAGCTTTTTGGTGATGGGGATTCATTCTGGGATTATAGTCTTCGTGGCTaGAACTCTCAGTGCAAATAT | + |
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Preference number: 4 (lower is better) Translates to: GGSFSLKELFGDGDSFWDYSLRG*NSQCKY Trigger: ATATTTGCACTGAGAGTTCCAGCCACGAAGACTATA...ATCCCAGAATGAATCCCCATCACCAAAAAGCTCCTTCAAACTGAATGACCCTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS-3UTR CCA 90 bp | AGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTATCTGAAGACCCAGATTTGAAGTaGATGCTTATATGTCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: RAKVLIRPNPGPVSEVSEDPDLK*MLICLF Trigger: GAACAGACATATAAGCATCCACTTCAAATCTGGGTC...TTCAGATACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR GCA 90 bp | TATCCAGAGTATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCTCGATGTGCTCCTCATaGAGGACTCTCCCTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: YPEYFIVRAKVLIRPNPGSMCSS*RTLPFC Trigger: ACAGAAAGGGAGAGTCCTGCATGAGGAGCACATCGA...GCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATACTCTGGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CCA 90 bp | CCAGAGTATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCTATAGTCTTCGTGGCTaGAACTCTCAGTGCAAATAT | + |
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Preference number: 4 (lower is better) Translates to: PEYFIVRAKVLIRPNPGPYSLRG*NSQCKY Trigger: ATATTTGCACTGAGAGTTCCAGCCACGAAGACTATA...GGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATACTCTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CCA 90 bp | TATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCACAAATGACAATGCCATaGGGTATTCCACGAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: YFIVRAKVLIRPNPGPVSQMTMP*GIPRGH Trigger: ATGTCCTCGTGGAATACCCCATGGCATTGTCATTTG...TGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| 3UTR CAA 72 bp | GTTTATCCAGAGTATTTTATTGTAAGAGCTAAAGTGTaGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: VYPEYFIVRAKV*IRPNPGPVSEV Trigger: TACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATACTCTGGATAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS GCA 90 bp | TTCCGGTGGCACAGCCTCTGGATGTCGCTGGCCAGCTCCAGGCAATaGAGGATGCGCTTCTTCTCAGCAGCCAGGTCCTCTGCAGAGACC | + |
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Preference number: 5 (lower is better) Translates to: FRWHSLWMSLASSRQ*RMRFFSAARSSAET Trigger: GGTCTCTGCAGAGGACCTGGCTGCTGAGAAGAAGCGCATCCTGCATTGCCTGGAGCTGGCCAGCGACATCCAGAGGCTGTGCCACCGGAA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS GCA 90 bp | GGCAGCAGGCACAGCAGCAGGCAGTGGGCACAGCAGCAGGCACCATaGACAGCAGCAGGTATGGTGGTAGTCTTTCTGTGCAGCCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: GSRHSSRQWAQQQAP*TAAGMVVVFLCSQL Trigger: GAGCTGGCTGCACAGAAAGACTACCACCATACCTGCTGCTGTGCATGGTGCCTGCTGCTGTGCCCACTGCCTGCTGCTGTGCCTGCTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135529.8 |
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| CDS CCA 90 bp | CAGCCAGCTCCCACAGCTCCTGCGCTGCCGCAAATGACAATGCCATaGGGTATTCCACGAGGACATGCTTGCCAGCCTGAAGAAACTGCC | + |
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Preference number: 5 (lower is better) Translates to: QPAPTAPALPQMTMP*GIPRGHACQPEETA Trigger: GGCAGTTTCTTCAGGCTGGCAAGCATGTCCTCGTGGAATACCCCATGGCATTGTCATTTGCGGCAGCGCAGGAGCTGTGGGAGCTGGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 90 bp | CTGCCGCAAATGACAATGCCATGGGGTATTCCACGAGGACATGCTTaGCAGCCTGAAGAAACTGCCTTATATAGTCTTCGTGGCTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: LPQMTMPWGIPRGHA*QPEETALYSLRGWN Trigger: GTTCCAGCCACGAAGACTATATAAGGCAGTTTCTTCAGGCTGGCAAGCATGTCCTCGTGGAATACCCCATGGCATTGTCATTTGCGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 90 bp | AAGAGTGTGGATCCTTCAAGTCCCTTATCCTCACAGAGCCAGCTCTaGCAACACCAACCACTACCACACCAAATTTCCTCTTTGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: KSVDPSSPLSSQSQL*QHQPLPHQISSLAQ Trigger: CTGAGCCAAAGAGGAAATTTGGTGTGGTAGTGGTTGGTGTTGGCAGAGCTGGCTCTGTGAGGATAAGGGACTTGAAGGATCCACACTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 90 bp | ACTTCTCTTTTCAGGAATTCGAACTCTTCCATCAAGAGTTCGATGTaGTCCTCATGCAGGACTCTCCCTTTCTGTGCAGCCAGCTCCCAC | + |
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Preference number: 5 (lower is better) Translates to: TSLFRNSNSSIKSSM*SSCRTLPFCAASSH Trigger: GTGGGAGCTGGCTGCACAGAAAGGGAGAGTCCTGCATGAGGAGCACATCGAACTCTTGATGGAAGAGTTCGAATTCCTGAAAAGAGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002064.15 ENSMUST00000142737.3 |
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| CDS GCA 90 bp | GCGACATCAACCTCTTGGCTGCGGAGAGCATCTTCCAAAGAAATCTaGCGTACATTATCAAGGCTCCCAAGTTCTCGTCTGGACACATAT | + |
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Preference number: 5 (lower is better) Translates to: ATSTSWLRRASSKEI*RTLSRLPSSRLDTY Trigger: ATATGTGTCCAGACGAGAACTTGGGAGCCTTGATAATGTACGGCAGATTTCTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 90 bp | GGCTGGAACTCTCAGTGCAAATATAGGCGACATCAACCTCTTGGCTaGGGAGAGCATCTTCCAAAGAAATCTGCCGTACATTATCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: GWNSQCKYRRHQPLG*GEHLPKKSAVHYQG Trigger: GCCTTGATAATGTACGGCAGATTTCTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGAGTTCCAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS CCA 90 bp | CATGCTTGCCAGCCTGAAGAAACTGCCTTATATAGTCTTCGTGGCTaGAACTCTCAGTGCAAATATAGGCGACATCAACCTCTTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: HACQPEETALYSLRG*NSQCKYRRHQPLGC Trigger: GCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGAGTTCCAGCCACGAAGACTATATAAGGCAGTTTCTTCAGGCTGGCAAGCATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 90 bp | CCTGAAGAAACTGCCTTATATAGTCTTCGTGGCTGGAACTCTCAGTaGAAATATAGGCGACATCAACCTCTTGGCTGCGGAGAGCATCTT | + |
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Preference number: 5 (lower is better) Translates to: PEETALYSLRGWNSQ*KYRRHQPLGCGEHL Trigger: AAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGAGTTCCAGCCACGAAGACTATATAAGGCAGTTTCTTCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS TCA 90 bp | TCCTCTGCAGAGACCTGGCCCAAGAGCTTCTGGATAAATATATCCTaGTCTTTCAGGAAAATGTTCTTATTGACTCCTACATTTGGCACT | + |
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Preference number: 5 (lower is better) Translates to: SSAETWPKSFWINIS*SFRKMFLLTPTFGT Trigger: AGTGCCAAATGTAGGAGTCAATAAGAACATTTTCCTGAAAGATCAGGATATATTTATCCAGAAGCTCTTGGGCCAGGTCTCTGCAGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CAA 90 bp | GAGTATTTTATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCCAAGGACCCAGATTaGAAGTGGATGCTTATATGT | + |
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Preference number: 5 (lower is better) Translates to: EYFIVRAKVLIRPNPGPVSKDPD*KWMLIC Trigger: ACATATAAGCATCCACTTCAAATCTGGGTCCTTGGA...AACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAATAAAATACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS-3UTR CAA 90 bp | ATTGTAAGAGCTAAAGTGTTGATAAGACCAAACCCTGGCCCCGTTTCAGAGGTAAGGAAAATGTTCTTATaGACTCCTACATTTGGCACT | + |
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Preference number: 5 (lower is better) Translates to: IVRAKVLIRPNPGPVSEVRKMFL*TPTFGT Trigger: AGTGCCAAATGTAGGAGTCAATAAGAACATTTTCCT...TACCTCTGAAACGGGGCCAGGGTTTGGTCTTATCAACACTTTAGCTCTTACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS CCA 90 bp | TATATCCTGATCTTTCAGGAAAATGTTCTTATTGACTCCTACATTTaGCACTTCCTCCAAGGACCCAGATTTGAAGTGGATGCTTATATG | + |
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Preference number: 5 (lower is better) Translates to: YILIFQENVLIDSYI*HFLQGPRFEVDAYM Trigger: CATATAAGCATCCACTTCAAATCTGGGTCCTTGGAGGAAGTGCCAAATGTAGGAGTCAATAAGAACATTTTCCTGAAAGATCAGGATATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS GCA 72 bp | TTCGATGTGCTCCTCATGCAGGACTCTCCCTTTCTGTaGAGCCAGCTCCCACAGCTCCTGCGCTGCCGCAAA | + |
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Preference number: 6 (lower is better) Translates to: FDVLLMQDSPFL*SQLPQLLRCRK Trigger: TTTGCGGCAGCGCAGGAGCTGTGGGAGCTGGCTGCACAGAAAGGGAGAGTCCTGCATGAGGAGCACATCGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002064.15 ENSMUST00000142737.3 |
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| CDS GCA 72 bp | TCTGGATGTCGCTGGCCAGCTCCAGGCAATGCAGGATaGGCTTCTTCTCAGCAGCCAGGTCCTCTGCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: SGCRWPAPGNAG*ASSQQPGPLQR Trigger: TCTCTGCAGAGGACCTGGCTGCTGAGAAGAAGCGCATCCTGCATTGCCTGGAGCTGGCCAGCGACATCCAGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS GCA 72 bp | CACAGCAGCAGGCAGTGGGCACAGCAGCAGGCACCATaGACAGCAGCAGGTATGGTGGTAGTCTTTCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: HSSRQWAQQQAP*TAAGMVVVFLC Trigger: GCACAGAAAGACTACCACCATACCTGCTGCTGTGCATGGTGCCTGCTGCTGTGCCCACTGCCTGCTGCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135529.8 |
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| CDS CCA 72 bp | CCCACAGCTCCTGCGCTGCCGCAAATGACAATGCCATaGGGTATTCCACGAGGACATGCTTGCCAGCCTGAA | + |
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Preference number: 6 (lower is better) Translates to: PTAPALPQMTMP*GIPRGHACQPE Trigger: TTCAGGCTGGCAAGCATGTCCTCGTGGAATACCCCATGGCATTGTCATTTGCGGCAGCGCAGGAGCTGTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS TCA 72 bp | GGAAGCCAAATTTCTCTTCTTCCAGGGGGCTGGCTGTaGAGCGAAGAGATCCTTTTAGCAGCTCCTTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: GSQISLLPGGWL*SEEILLAAPSR Trigger: CCGGGAAGGAGCTGCTAAAAGGATCTCTTCGCTTCACAGCCAGCCCCCTGGAAGAAGAGAAATTTGGCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS TCA 72 bp | AGAAGGAACGACAGCTGGGTGCTTCCTCTACTTCTCTaGGCTAGAAGGTTTTCAACCCAGCCCCTGGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RRNDSWVLPLLL*ARRFSTQPLAF Trigger: GAAAGCCAGGGGCTGGGTTGAAAACCTTCTAGCTCAGAGAAGTAGAGGAAGCACCCAGCTGTCGTTCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110389.10 |
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| CDS GCA 72 bp | GATCCTTCAAGTCCCTTATCCTCACAGAGCCAGCTCTaGCAACACCAACCACTACCACACCAAATTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: DPSSPLSSQSQL*QHQPLPHQISS Trigger: AGAGGAAATTTGGTGTGGTAGTGGTTGGTGTTGGCAGAGCTGGCTCTGTGAGGATAAGGGACTTGAAGGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 72 bp | ACCTCTTGGCTGCGGAGAGCATCTTCCAAAGAAATCTaGCGTACATTATCAAGGCTCCCAAGTTCTCGTCTG | + |
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Preference number: 6 (lower is better) Translates to: TSWLRRASSKEI*RTLSRLPSSRL Trigger: CAGACGAGAACTTGGGAGCCTTGATAATGTACGGCAGATTTCTTTGGAAGATGCTCTCCGCAGCCAAGAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS CAA 72 bp | GGAACTCTCAGTGCAAATATAGGCGACATCAACCTCTaGGCTGCGGAGAGCATCTTCCAAAGAAATCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: GTLSANIGDINL*AAESIFQRNLP Trigger: CGGCAGATTTCTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGAGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 72 bp | ACTGCCTTATATAGTCTTCGTGGCTGGAACTCTCAGTaGAAATATAGGCGACATCAACCTCTTGGCTGCGGA | + |
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Preference number: 6 (lower is better) Translates to: TALYSLRGWNSQ*KYRRHQPLGCG Trigger: TCCGCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGAGTTCCAGCCACGAAGACTATATAAGGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS CAA 90 bp | TTCGTGGCTGGAACTCTCAGTGCAAATATAGGCGACATCAACCTCTaGGCTGCGGAGAGCATCTTCCAAAGAAATCTGCCGTACATTATC | + |
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Preference number: 6 (lower is better) Translates to: FVAGTLSANIGDINL*AAESIFQRNLPYII Trigger: GATAATGTACGGCAGATTTCTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGAGTTCCAGCCACGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 72 bp | TCTCAGTGCAAATATAGGCGACATCAACCTCTTGGCTaGGGAGAGCATCTTCCAAAGAAATCTGCCGTACAT | + |
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Preference number: 6 (lower is better) Translates to: SQCKYRRHQPLG*GEHLPKKSAVH Trigger: ATGTACGGCAGATTTCTTTGGAAGATGCTCTCCGCAGCCAAGAGGTTGATGTCGCCTATATTTGCACTGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS GCA 72 bp | ATGACAATGCCATGGGGTATTCCACGAGGACATGCTTaGCAGCCTGAAGAAACTGCCTTATATAGTCTTCGT | + |
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Preference number: 6 (lower is better) Translates to: MTMPWGIPRGHA*QPEETALYSLR Trigger: ACGAAGACTATATAAGGCAGTTTCTTCAGGCTGGCAAGCATGTCCTCGTGGAATACCCCATGGCATTGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS CCA 72 bp | TCTGCCGTACATTATCAAGGCTCCCAAGTTCTCGTCTaGACACATATCCAATCAGGTTTAGGAATGCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: SAVHYQGSQVLV*THIQSGLGMLK Trigger: CTTCAGCATTCCTAAACCTGATTGGATATGTGTCCAGACGAGAACTTGGGAGCCTTGATAATGTACGGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000002064.15 ENSMUST00000110389.10 ENSMUST00000135529.8 ENSMUST00000142737.3 |
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| CDS CAA 72 bp | CCAGGCCCTTTCTCTTCAATCCATGATAATGGACTTTaGTTCTGGGTCTCGAGCTGCACGGTCATTTTCATA | + |
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Preference number: 6 (lower is better) Translates to: PGPFSSIHDNGL*FWVSSCTVIFI Trigger: TATGAAAATGACCGTGCAGCTCGAGACCCAGAACAAAAGTCCATTATCATGGATTGAAGAGAAAGGGCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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| CDS CAA 90 bp | TTCTTATTGACTCCTACATTTGGCACTTCCTCCAAGGACCCAGATTaGAAGTGGATGCTTATATGTCTGTTCCTTTTTAAGCCAGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: FLLTPTFGTSSKDPD*KWMLICLFLFKPGP Trigger: AGGGCCTGGCTTAAAAAGGAACAGACATATAAGCATCCACTTCAAATCTGGGTCCTTGGAGGAAGTGCCAAATGTAGGAGTCAATAAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002064.15 |
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