Pregenerated sensors for BLOC1S6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005804Ensembl transcript IDs: ENSMUST00000005954.9
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGGACTGGATCCCCTGGAACTGGAGGTACAGATGGCTGTGAGCTaGCAAGTGGGAGGTAGGAATAGAATCCTGGTCCTCTGCAAAGGC | + |
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Preference number: 1 (lower is better) Translates to: RGLDPLELEVQMAVS*QVGGRNRILVLCKG Trigger: GCCTTTGCAGAGGACCAGGATTCTATTCCTACCTCCCACTTGGCAGCTCACAGCCATCTGTACCTCCAGTTCCAGGGGATCCAGTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CCA 90 bp | TGCACTTTCTTAAGTTCCCAGGTGAAAAGGACATGCAGTTTAGTGTaGGAAACCCTGCCAGTGGCAGCCAGACCCAGAAGTGCCTCATCC | + |
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Preference number: 1 (lower is better) Translates to: CTFLSSQVKRTCSLV*ETLPVAARPRSASS Trigger: GGATGAGGCACTTCTGGGTCTGGCTGCCACTGGCAGGGTTTCCCACACTAAACTGCATGTCCTTTTCACCTGGGAACTTAAGAAAGTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 90 bp | AGGTGGATTGTTAAGTTTGAGGCCAACCTGGTCCCCACAGGTTCTTaGGGACAGCCAGGGCTTTATAGAGAGCCTGCTGTCTCTAGAAAG | + |
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Preference number: 1 (lower is better) Translates to: RWIVKFEANLVPTGS*GQPGLYREPAVSRK Trigger: CTTTCTAGAGACAGCAGGCTCTCTATAAAGCCCTGGCTGTCCTCAAGAACCTGTGGGGACCAGGTTGGCCTCAAACTTAACAATCCACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR GCA 90 bp | TGGGGAGGGAGGGAGGAAGTACAGAAACATTGTTACATTGTAGCATaGACACACACACACACACACACACACACAGAGAGAGAGAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: WGGREEVQKHCYIVA*THTHTHTHTERERE Trigger: CTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCTACAATGTAACAATGTTTCTGTACTTCCTCCCTCCCTCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CCA 90 bp | GGAAAAATCTGTCTGCCATCAACTCCCAGCCTGCATCTAAGGTCCTaGTGTTTCCAGTGTGCACACACTGCCTATGGTCTTCATAAAAGC | + |
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Preference number: 1 (lower is better) Translates to: GKICLPSTPSLHLRS*CFQCAHTAYGLHKS Trigger: GCTTTTATGAAGACCATAGGCAGTGTGTGCACACTGGAAACACCAGGACCTTAGATGCAGGCTGGGAGTTGATGGCAGACAGATTTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR GCA 90 bp | ACCACAATTCACTGTGGACACATCTCCATTCAATGTCTGCACATTTaGCTGACACTCATGACAAATCAGCTGAAAATGAGCACCCCGCAT | + |
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Preference number: 1 (lower is better) Translates to: TTIHCGHISIQCLHI*LTLMTNQLKMSTPH Trigger: ATGCGGGGTGCTCATTTTCAGCTGATTTGTCATGAGTGTCAGGCAAATGTGCAGACATTGAATGGAGATGTGTCCACAGTGAATTGTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 90 bp | ATAGAATCCTGGTCCTCTGCAAAGGCATTAAGTGCTCTTAACTGCTaGACAAGCTCTCCAGCCCATCTTTCTGATATGTTAAAAAGTCTT | + |
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Preference number: 1 (lower is better) Translates to: IESWSSAKALSALNC*TSSPAHLSDMLKSL Trigger: AAGACTTTTTAACATATCAGAAAGATGGGCTGGAGAGCTTGTTCAGCAGTTAAGAGCACTTAATGCCTTTGCAGAGGACCAGGATTCTAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 90 bp | ATGATGTATACTTCTTTTTGTAGATTTATTTCTCTATTATGTGGGTaGGTGTCTCATCTACGTGTGAGTAGGTGCACCATCTATGTGGCC | + |
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Preference number: 1 (lower is better) Translates to: MMYTSFCRFISLLCG*VSHLRVSRCTIYVA Trigger: GGCCACATAGATGGTGCACCTACTCACACGTAGATGAGACACTCACCCACATAATAGAGAAATAAATCTACAAAAAGAAGTATACATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 90 bp | AACAGTAAAGGCATCATGCCCTCTCTTCTGTACACTATTTACATATaGTGTGAGCAGCAGCAGATTTTGTTCTACTTAAAAACCAGAACA | + |
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Preference number: 1 (lower is better) Translates to: NSKGIMPSLLYTIYI*CEQQQILFYLKTRT Trigger: TGTTCTGGTTTTTAAGTAGAACAAAATCTGCTGCTGCTCACATCATATGTAAATAGTGTACAGAAGAGAGGGCATGATGCCTTTACTGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | ATGGCTGTGAGCTGCCAAGTGGGAGGTAGGAATAGAATCCTGGTCCTCTGCAAAGGGAAACCCTGCCAGTaGCAGCCAGACCCAGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: MAVSCQVGGRNRILVLCKGKPCQ*QPDPEV Trigger: CACTTCTGGGTCTGGCTGCCACTGGCAGGGTTTCCC...TTTGCAGAGGACCAGGATTCTATTCCTACCTCCCACTTGGCAGCTCACAGCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | CATTTGCCTGACACTCATGACAAATCAGCTGAAAATGAGCACCCCGCATGTCAGACATGCAGTTTAGTGTaGGAAACCCTGCCAGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: HLPDTHDKSAENEHPACQTCSLV*ETLPVA Trigger: TGCCACTGGCAGGGTTTCCCACACTAAACTGCATGT...CTGACATGCGGGGTGCTCATTTTCAGCTGATTTGTCATGAGTGTCAGGCAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 90 bp | GAGAGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGATGCCTTaGAGGATCTGGCAGGTCCACCATTGTTGCACAGCATTAGGAATG | + |
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Preference number: 2 (lower is better) Translates to: EREREREREREREMP*RIWQVHHCCTALGM Trigger: CATTCCTAATGCTGTGCAACAATGGTGGACCTGCCAGATCCTCAAAGGCATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 90 bp | CACCACAATTCACTGTGGACACATCTCCATTCAATGTCTGCACATTaGCCTGACACTCATGACAAATCAGCTGAAAATGAGCACCCCGCA | + |
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Preference number: 2 (lower is better) Translates to: HHNSLWTHLHSMSAH*PDTHDKSAENEHPA Trigger: TGCGGGGTGCTCATTTTCAGCTGATTTGTCATGAGTGTCAGGCAAATGTGCAGACATTGAATGGAGATGTGTCCACAGTGAATTGTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | AAATCAATTCTCAAGGAGCTCAGACCTTCTGCTCATTTTGAACCCAGACTCTGGCTCTGTGTACAGCAATaGGGATCCAGGAAGCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: KSILKELRPSAHFEPRLWLCVQQ*GSRKQD Trigger: ATCCTGCTTCCTGGATCCCCATTGCTGTACACAGAG...CCAGAGTCTGGGTTCAAAATGAGCAGAAGGTCTGAGCTCCTTGAGAATTGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR GCA 90 bp | GTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCACCACCACTGGTCTACTTTGTAGCTTGTGCTaGTCACACACAATAGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: VFQKCPGTALETITTTGLLCSLC*SHTIGS Trigger: AGACCCTATTGTGTGTGAGCAGCACAAGCTACAAAG...TAGACCAGTGGTGGTGATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAACTGCATCTAAGGTCCTaGTGTTTCCAGTGTGCACAC | + |
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Preference number: 2 (lower is better) Translates to: INICGITIHSLGRSGLLQLHLRS*CFQCAH Trigger: GTGTGCACACTGGAAACACCAGGACCTTAGATGCAG...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGAAAATGAGCACCCCGCATGTCAGCACCATACATATCTGATATTATTTCAAAGTTTGAGGCCAACCTaGTCCCCACAGGTTCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: AENEHPACQHHTYLILFQSLRPT*SPQVLE Trigger: CTCAAGAACCTGTGGGGACCAGGTTGGCCTCAAACT...TTGAAATAATATCAGATATGTATGGTGCTGACATGCGGGGTGCTCATTTTCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGACTGAGGAAGTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCGCAACAGGGGAAAACTaGGGAGAAGGGCTGGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: FKTEEVFQKCPGTALETIATGEN*GEGLEK Trigger: TTTTTCCAGCCCTTCTCCTCAGTTTTCCCCTGTTGC...GATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAACTTCCTCAGTCTTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR GCA 90 bp | TTTAAGACTGAGGAAGTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCCTGGAAAAATCTGTCTaGCATCAACTCCCAGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: FKTEEVFQKCPGTALETILEKSV*HQLPAC Trigger: GCAGGCTGGGAGTTGATGGCAGACAGATTTTTCCAG...GATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAACTTCCTCAGTCTTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR GCA 90 bp | GTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCACCACCACTGGTCTATGTTACATTGTAGCATaGACACACACACACACACAC | + |
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Preference number: 2 (lower is better) Translates to: VFQKCPGTALETITTTGLCYIVA*THTHTH Trigger: GTGTGTGTGTGTGTGTGTGCATGCTACAATGTAACA...TAGACCAGTGGTGGTGATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAATGCCAAAAATCAGTGTaGCCATACAGGAAAGGCCTG | + |
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Preference number: 2 (lower is better) Translates to: INICGITIHSLGRSGLLQCQKSV*PYRKGL Trigger: CAGGCCTTTCCTGTATGGCCACACTGATTTTTGGCA...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 90 bp | GAATCGCCAGCCTTCGTCAGCTATCAGGCATTTTATTGTAACATTTaGCAAGGTAATGACATTGTCCTGCAGGTCCTATTGACTTGTGCT | + |
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Preference number: 2 (lower is better) Translates to: ESPAFVSYQAFYCNI*QGNDIVLQVLLTCA Trigger: AGCACAAGTCAATAGGACCTGCAGGACAATGTCATTACCTTGCAAAATGTTACAATAAAATGCCTGATAGCTGACGAAGGCTGGCGATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR TCA 90 bp | GCTGAAAATGAGCACCCCGCATGTCAGCACCATACATATCTGATATTATTTCAAACCTTCTGCTCATTTTaGACCCAGACTCTGGAACAG | + |
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Preference number: 2 (lower is better) Translates to: AENEHPACQHHTYLILFQTFCSF*TQTLEQ Trigger: CTGTTCCAGAGTCTGGGTTCAAAATGAGCAGAAGGT...TTGAAATAATATCAGATATGTATGGTGCTGACATGCGGGGTGCTCATTTTCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CCA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAAGGAATAAGAGGCAGGTaGATTGTTAAGTTTGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: INICGITIHSLGRSGLLQGIRGR*IVKFEA Trigger: GGCCTCAAACTTAACAATCCACCTGCCTCTTATTCC...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR TCA 90 bp | TTTAAGACTGAGGAAGTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCAAGTTAAGCAAGAGTTaGAAGACACAGCAACCCTGG | + |
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Preference number: 2 (lower is better) Translates to: FKTEEVFQKCPGTALETIKLSKS*KTQQPW Trigger: CCAGGGTTGCTGTGTCTTTCAACTCTTGCTTAACTT...GATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAACTTCCTCAGTCTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR GCA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAAGAATGGATAGAATCCTaGCCTGAACCCAAAATCTAC | + |
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Preference number: 2 (lower is better) Translates to: INICGITIHSLGRSGLLQEWIES*PEPKIY Trigger: GTAGATTTTGGGTTCAGGGCAGGATTCTATCCATTC...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 90 bp | CCAAATGATTTAAGATCAAATAATAATTGTAAAGTTAAGCAAGAGTaGAAAGACACAGCAACCCTGGAAACATTTCAGGACATGCCACGG | + |
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Preference number: 2 (lower is better) Translates to: PNDLRSNNNCKVKQE*KDTATLETFQDMPR Trigger: CCGTGGCATGTCCTGAAATGTTTCCAGGGTTGCTGTGTCTTTCAACTCTTGCTTAACTTTACAATTATTATTTGATCTTAAATCATTTGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 90 bp | CAAGTGACTAAGGGTTACAGCCTTTCAAATAGACTCATTATATTCTaGAACAGAAGTCAAGATCAATATCTGTGGGATCACAATTCATTC | + |
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Preference number: 2 (lower is better) Translates to: QVTKGYSLSNRLIIF*NRSQDQYLWDHNSF Trigger: GAATGAATTGTGATCCCACAGATATTGATCTTGACTTCTGTTCAAGAATATAATGAGTCTATTTGAAAGGCTGTAACCCTTAGTCACTTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | GACTGGATCCCCTGGAACTGGAGGTACAGATGGCTGTaGGCTGCCAAGTGGGAGGTAGGAATAGAATCCTGG | + |
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Preference number: 3 (lower is better) Translates to: DWIPWNWRYRWL*AAKWEVGIESW Trigger: CCAGGATTCTATTCCTACCTCCCACTTGGCAGCTCACAGCCATCTGTACCTCCAGTTCCAGGGGATCCAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | ATGGCTGTGAGCTGCCAAGTGGGAGGTAGGAATAGAATCCTGGTCCTCTGCAAACAGAGGCAGGTGGATTaGAGTTTGAGGCCAGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: MAVSCQVGGRNRILVLCKQRQVD*SLRPAW Trigger: CCAGGCTGGCCTCAAACTCAAATCCACCTGCCTCTG...TTTGCAGAGGACCAGGATTCTATTCCTACCTCCCACTTGGCAGCTCACAGCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | CATCTACGTGTGAGTAGGTGCACCATCTATGTGGCCTaGTGCTACAGAAGCCAGATGAGGGGACTGGATCCC | + |
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Preference number: 3 (lower is better) Translates to: HLRVSRCTIYVA*CYRSQMRGLDP Trigger: GGGATCCAGTCCCCTCATCTGGCTTCTGTAGCATCAGGCCACATAGATGGTGCACCTACTCACACGTAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CCA 72 bp | TGTCTGCCATCAACTCCCAGCCTGCATCTAAGGTCCTaGTGTTTCCAGTGTGCACACACTGCCTATGGTCTT | + |
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Preference number: 3 (lower is better) Translates to: CLPSTPSLHLRS*CFQCAHTAYGL Trigger: AAGACCATAGGCAGTGTGTGCACACTGGAAACACCAGGACCTTAGATGCAGGCTGGGAGTTGATGGCAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | ATGGCTGTGAGCTGCCAAGTGGGAGGTAGGAATAGAATCCTGGTCCTCTGCAAAGGTGGATTGTTAAGTTaGAGGCCAACCTGGTCCCCA | + |
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Preference number: 3 (lower is better) Translates to: MAVSCQVGGRNRILVLCKGGLLS*RPTWSP Trigger: TGGGGACCAGGTTGGCCTCAAACTTAACAATCCACC...TTTGCAGAGGACCAGGATTCTATTCCTACCTCCCACTTGGCAGCTCACAGCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | ATGGCTGTGAGCTGCCAAGTGGGAGGTAGGAATAGAATCCTGGTCCTCTGCAAACTGGCAGGTCCACCATaGTTGCACAGCATTAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: MAVSCQVGGRNRILVLCKLAGPP*LHSIRN Trigger: ATTCCTAATGCTGTGCAACAATGGTGGACCTGCCAG...TTTGCAGAGGACCAGGATTCTATTCCTACCTCCCACTTGGCAGCTCACAGCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CCA 72 bp | TTAAGTTCCCAGGTGAAAAGGACATGCAGTTTAGTGTaGGAAACCCTGCCAGTGGCAGCCAGACCCAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: LSSQVKRTCSLV*ETLPVAARPRS Trigger: ACTTCTGGGTCTGGCTGCCACTGGCAGGGTTTCCCACACTAAACTGCATGTCCTTTTCACCTGGGAACTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAAGGTCCCCACAGGTTCTaGAGGACAGCCAGGGCTTTA | + |
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Preference number: 3 (lower is better) Translates to: INICGITIHSLGRSGLLQGPHRF*RTARAL Trigger: TAAAGCCCTGGCTGTCCTCAAGAACCTGTGGGGACC...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | GCTGAAAATGAGCACCCCGCATGTCAGCACCATACATATCTGATATTATTTCAAGAGAGAGAGATGCCTTaGAGGATCTGGCAGGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: AENEHPACQHHTYLILFQEREMP*RIWQVH Trigger: GTGGACCTGCCAGATCCTCAAAGGCATCTCTCTCTC...TTGAAATAATATCAGATATGTATGGTGCTGACATGCGGGGTGCTCATTTTCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | TGTTGCACAGCATTAGGAATGGATAGAATCCTGCCCTaGACCCAAAATCTACAGCAGCAGCAACAGGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: CCTALGMDRILP*TQNLQQQQQGK Trigger: TTTCCCCTGTTGCTGCTGCTGTAGATTTTGGGTTCAGGGCAGGATTCTATCCATTCCTAATGCTGTGCAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | CTTGAAACAATCACCACCACTGGTCTAAAGTCAGCATaGAAAGAATCGCCAGCCTTCGTCAGCTATCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: LETITTTGLKSA*KESPAFVSYQA Trigger: TGCCTGATAGCTGACGAAGGCTGGCGATTCTTTTCATGCTGACTTTAGACCAGTGGTGGTGATTGTTTCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | CATTTGCCTGACACTCATGACAAATCAGCTGAAAATGAGCACCCCGCATGTCAGAAAGTTAAGCAAGAGTaGAAAGACACAGCAACCCTG | + |
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Preference number: 3 (lower is better) Translates to: HLPDTHDKSAENEHPACQKVKQE*KDTATL Trigger: CAGGGTTGCTGTGTCTTTCAACTCTTGCTTAACTTT...CTGACATGCGGGGTGCTCATTTTCAGCTGATTTGTCATGAGTGTCAGGCAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | TTTCTCTATTATGTGGGTGAGTGTCTCATCTACGTGTaGGTAGGTGCACCATCTATGTGGCCTGATGCTACA | + |
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Preference number: 3 (lower is better) Translates to: FLYYVGECLIYV*VGAPSMWPDAT Trigger: TGTAGCATCAGGCCACATAGATGGTGCACCTACTCACACGTAGATGAGACACTCACCCACATAATAGAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CCA 72 bp | GGTACTGGTGAACTGAATCCACACCACAATTCACTGTaGACACATCTCCATTCAATGTCTGCACATTTGCCT | + |
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Preference number: 3 (lower is better) Translates to: GTGELNPHHNSL*THLHSMSAHLP Trigger: AGGCAAATGTGCAGACATTGAATGGAGATGTGTCCACAGTGAATTGTGGTGTGGATTCAGTTCACCAGTACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | TGGTCCTCTGCAAAGGCATTAAGTGCTCTTAACTGCTaGACAAGCTCTCCAGCCCATCTTTCTGATATGTTA | + |
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Preference number: 3 (lower is better) Translates to: WSSAKALSALNC*TSSPAHLSDML Trigger: TAACATATCAGAAAGATGGGCTGGAGAGCTTGTTCAGCAGTTAAGAGCACTTAATGCCTTTGCAGAGGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR GCA 72 bp | AGGGAGGAAGTACAGAAACATTGTTACATTGTAGCATaGACACACACACACACACACACACACACAGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: REEVQKHCYIVA*THTHTHTHTER Trigger: TCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCTACAATGTAACAATGTTTCTGTACTTCCTCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAAGGAAGTACAGAAACATaGTTACATTGTAGCATGCAC | + |
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Preference number: 3 (lower is better) Translates to: INICGITIHSLGRSGLLQGSTET*LHCSMH Trigger: GTGCATGCTACAATGTAACAATGTTTCTGTACTTCC...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | ATTAGGAAGGAGCGGGCTCCTTCAAAGAAAGTTATGCCTTTCTTTAAGCTACAGAACAATAAAAAGCAATaGCCAAAAATCAGTGTGGCC | + |
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Preference number: 3 (lower is better) Translates to: IRKERAPSKKVMPFFKLQNNKKQ*PKISVA Trigger: GGCCACACTGATTTTTGGCAATTGCTTTTTATTGTT...CTGTAGCTTAAAGAAAGGCATAACTTTCTTTGAAGGAGCCCGCTCCTTCCTAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR-3UTR CAA 90 bp | TTTAAGACTGAGGAAGTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCGAGCAGCAGCAGATTTaGTTCTACTTAAAAACCAGA | + |
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Preference number: 3 (lower is better) Translates to: FKTEEVFQKCPGTALETIEQQQI*FYLKTR Trigger: TCTGGTTTTTAAGTAGAACAAAATCTGCTGCTGCTC...GATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAACTTCCTCAGTCTTAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | TCAAACAAAGGTGTTTCAGCATATAATTGGTACTGGTaGACTGAATCCACACCACAATTCACTGTGGACACA | + |
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Preference number: 3 (lower is better) Translates to: SNKGVSAYNWYW*TESTPQFTVDT Trigger: TGTGTCCACAGTGAATTGTGGTGTGGATTCAGTTCACCAGTACCAATTATATGCTGAAACACCTTTGTTTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | CATGCCCTCTCTTCTGTACACTATTTACATATGATGTaGGCAGCAGCAGATTTTGTTCTACTTAAAAACCAG | + |
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Preference number: 3 (lower is better) Translates to: HALSSVHYLHMM*AAADFVLLKNQ Trigger: CTGGTTTTTAAGTAGAACAAAATCTGCTGCTGCTCACATCATATGTAAATAGTGTACAGAAGAGAGGGCATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | GGCATCATGCCCTCTCTTCTGTACACTATTTACATATaGTGTGAGCAGCAGCAGATTTTGTTCTACTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: GIMPSLLYTIYI*CEQQQILFYLK Trigger: TTTTAAGTAGAACAAAATCTGCTGCTGCTCACATCATATGTAAATAGTGTACAGAAGAGAGGGCATGATGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | CATAAAAGCTCAGCAGCTCTCTTGCTGGGAGATTCGTaGTCAGACAATTGGTATTTCTCTTTAAACAATAAA | + |
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Preference number: 3 (lower is better) Translates to: HKSSAALLLGDS*SDNWYFSLNNK Trigger: TTTATTGTTTAAAGAGAAATACCAATTGTCTGATCACGAATCTCCCAGCAAGAGAGCTGCTGAGCTTTTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CCA 72 bp | ATTATATTCTTGAACAGAAGTCAAGATCAATATCTGTaGGATCACAATTCATTCATTAGGAAGGAGCGGGCT | + |
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Preference number: 3 (lower is better) Translates to: IIFLNRSQDQYL*DHNSFIRKERA Trigger: AGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGATCTTGACTTCTGTTCAAGAATATAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR TCA 72 bp | AGGGTTACAGCCTTTCAAATAGACTCATTATATTCTTaGACAGAAGTCAAGATCAATATCTGTGGGATCACA | + |
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Preference number: 3 (lower is better) Translates to: RVTAFQIDSLYS*TEVKINICGIT Trigger: TGTGATCCCACAGATATTGATCTTGACTTCTGTTCAAGAATATAATGAGTCTATTTGAAAGGCTGTAACCCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CCA 90 bp | GAGGAAGTACAGAAACATTGTTACATTGTAGCATGCACACACACACACACACACCGCTTAAGCCCGGCGTaGGCTCGCCGGCCTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: EEVQKHCYIVACTHTHTHRLSPA*ARRPPG Trigger: GCCTGGAGGCCGGCGAGCCCACGCCGGGCTTAAGCG...GTGTGTGTGTGTGTGTGTGCATGCTACAATGTAACAATGTTTCTGTACTTCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR GCA 90 bp | AAGGAGCTCAGACCTTCTGCTCATTTTGAACCCAGACTCTGGAACAGCCAAAGTTCCAGCTCTTCTCTCTaGCGCTTCTGCTGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: KELRPSAHFEPRLWNSQSSSSSL*RFCCSF Trigger: GAAGCTGCAGCAGAAGCGGCAGAGAGAAGAGCTGGA...ACTTTGGCTGTTCCAGAGTCTGGGTTCAAAATGAGCAGAAGGTCTGAGCTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CCA 90 bp | AAGGAGCTCAGACCTTCTGCTCATTTTGAACCCAGACTCTGGAACAGCCAAAGTTCCTCTTGGCTGGCTTaGCTGTCAGCTGCTTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KELRPSAHFEPRLWNSQSSSWLA*LSAAFL Trigger: GAGAAAAGCAGCTGACAGCCAAGCCAGCCAAGAGGA...ACTTTGGCTGTTCCAGAGTCTGGGTTCAAAATGAGCAGAAGGTCTGAGCTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 72 bp | AGTGTAAGCCACTGGACGGTCTATCCCACCAGTTCCTaGCATCAGAATCTGGAGCACTCCAACTCTTCTATG | + |
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Preference number: 4 (lower is better) Translates to: SVSHWTVYPTSS*HQNLEHSNSSM Trigger: CATAGAAGAGTTGGAGTGCTCCAGATTCTGATGCAAGGAACTGGTGGGATAGACCGTCCAGTGGCTTACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR GCA 90 bp | GTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCACCACCACTGGTCTATCTCTCTGCCGCTTCTaGTGCAGCTTCAGTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: VFQKCPGTALETITTTGLSLCRF*CSFSAL Trigger: AAGAGCACTGAAGCTGCAGCAGAAGCGGCAGAGAGA...TAGACCAGTGGTGGTGATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 72 bp | AGAGAAAGAGAAAGAGAGAGAGAGAGAGAGATGCCTTaGAGGATCTGGCAGGTCCACCATTGTTGCACAGCA | + |
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Preference number: 4 (lower is better) Translates to: REREREREREMP*RIWQVHHCCTA Trigger: TGCTGTGCAACAATGGTGGACCTGCCAGATCCTCAAAGGCATCTCTCTCTCTCTCTCTCTTTCTCTTTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR GCA 90 bp | GTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCACCACCACTGGTCTACTCTGCCGCTTCTGCTaGAGCTTCAGTGCTCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: VFQKCPGTALETITTTGLLCRFC*SFSALF Trigger: AAAAAGAGCACTGAAGCTGCAGCAGAAGCGGCAGAG...TAGACCAGTGGTGGTGATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR TCA 90 bp | ATTAGGAAGGAGCGGGCTCCTTCAAAGAAAGTTATGCCTTTCTTTAAGCTACAGCAACTTGGTTCTGTGTaGGTTCCTGGAGTGCTCGCT | + |
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Preference number: 4 (lower is better) Translates to: IRKERAPSKKVMPFFKLQQLGSV*VPGVLA Trigger: AGCGAGCACTCCAGGAACTCACACAGAACCAAGTTG...CTGTAGCTTAAAGAAAGGCATAACTTTCTTTGAAGGAGCCCGCTCCTTCCTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CCA 90 bp | TTTAAGACTGAGGAAGTTTTCCAGAAGTGTCCAGGAACAGCACTTGAAACAATCCCTGGAGTGCTCGCTTaGACCTCTGCAGATCTGGTA | + |
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Preference number: 4 (lower is better) Translates to: FKTEEVFQKCPGTALETIPGVLA*TSADLV Trigger: TACCAGATCTGCAGAGGTCCAAGCGAGCACTCCAGG...GATTGTTTCAAGTGCTGTTCCTGGACACTTCTGGAAAACTTCCTCAGTCTTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR GCA 90 bp | GCTGAAAATGAGCACCCCGCATGTCAGCACCATACATATCTGATATTATTTCAATCCTTTTCGCGTTGCTaGTCCCTCTCCAGCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: AENEHPACQHHTYLILFQSFSRC*SLSSSS Trigger: AGAAGAGCTGGAGAGGGAGCAGCAACGCGAAAAGGA...TTGAAATAATATCAGATATGTATGGTGCTGACATGCGGGGTGCTCATTTTCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR GCA 90 bp | ATTAGGAAGGAGCGGGCTCCTTCAAAGAAAGTTATGCCTTTCTTTAAGCTACAGAATTCCTTTTCGCGTTaGTGCTCCCTCTCCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: IRKERAPSKKVMPFFKLQNSFSR*CSLSSS Trigger: AGAGCTGGAGAGGGAGCAGCAACGCGAAAAGGAATT...CTGTAGCTTAAAGAAAGGCATAACTTTCTTTGAAGGAGCCCGCTCCTTCCTAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CCA 90 bp | AAGGAGCTCAGACCTTCTGCTCATTTTGAACCCAGACTCTGGAACAGCCAAAGTTCTAGTAACACAACTTaGTTCTGTGTGAGTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KELRPSAHFEPRLWNSQSSSNTT*FCVSSW Trigger: CCAGGAACTCACACAGAACCAAGTTGTGTTACTAGA...ACTTTGGCTGTTCCAGAGTCTGGGTTCAAAATGAGCAGAAGGTCTGAGCTCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CCA 90 bp | ATCAATATCTGTGGGATCACAATTCATTCATTAGGAAGGAGCGGGCTCCTTCAATTGGACGTTTTCTCATaGAGCAGCAGCATCTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: INICGITIHSLGRSGLLQLDVFS*SSSISF Trigger: GAAGGAGATGCTGCTGCTCCATGAGAAAACGTCCAA...TTGAAGGAGCCCGCTCCTTCCTAATGAATGAATTGTGATCCCACAGATATTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 72 bp | TCACTGTGGACACATCTCCATTCAATGTCTGCACATTaGCCTGACACTCATGACAAATCAGCTGAAAATGAG | + |
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Preference number: 4 (lower is better) Translates to: SLWTHLHSMSAH*PDTHDKSAENE Trigger: CTCATTTTCAGCTGATTTGTCATGAGTGTCAGGCAAATGTGCAGACATTGAATGGAGATGTGTCCACAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| 3UTR CAA 72 bp | GCCTTCGTCAGCTATCAGGCATTTTATTGTAACATTTaGCAAGGTAATGACATTGTCCTGCAGGTCCTATTG | + |
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Preference number: 4 (lower is better) Translates to: AFVSYQAFYCNI*QGNDIVLQVLL Trigger: CAATAGGACCTGCAGGACAATGTCATTACCTTGCAAAATGTTACAATAAAATGCCTGATAGCTGACGAAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CAA 90 bp | TGGTGTTTCCAGTGTGCACACACTGCCTATGGTCTTCATAAAAGCTCAGCAGCTTCCTGGAGTGCTCGCTaGGACCTCTGCAGATCTGGT | + |
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Preference number: 5 (lower is better) Translates to: WCFQCAHTAYGLHKSSAASWSAR*DLCRSG Trigger: ACCAGATCTGCAGAGGTCCAAGCGAGCACTCCAGGA...AGCTGCTGAGCTTTTATGAAGACCATAGGCAGTGTGTGCACACTGGAAACACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CAA 90 bp | GAGGAAGTACAGAAACATTGTTACATTGTAGCATGCACACACACACACACACACGTCCTCTTGGCTGGCTaGGCTGTCAGCTGCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: EEVQKHCYIVACTHTHTHVLLAG*AVSCFS Trigger: AGAAAAGCAGCTGACAGCCAAGCCAGCCAAGAGGAC...GTGTGTGTGTGTGTGTGTGCATGCTACAATGTAACAATGTTTCTGTACTTCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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| CDS-3UTR CAA 90 bp | TGGTGTTTCCAGTGTGCACACACTGCCTATGGTCTTCATAAAAGCTCAGCAGCTTCTGTGAACAAAGCATaGATGTCCAACATGGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: WCFQCAHTAYGLHKSSAASVNKA*MSNMEW Trigger: CCACTCCATGTTGGACATCAATGCTTTGTTCACAGA...AGCTGCTGAGCTTTTATGAAGACCATAGGCAGTGTGTGCACACTGGAAACACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005954.9 |
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