Pregenerated sensors for BLOC1S4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060708Ensembl transcript IDs: ENSMUST00000071949.5
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGTCAAATACAACTTCAGGACTCCCTGCAACAAAACGCCCAGTTTaGTATCTTAAGAAACTGTCTTCTTTCCTTTGGCTTACAGTCTAC | + |
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Preference number: 1 (lower is better) Translates to: LSNTTSGLPATKRPV*YLKKLSSFLWLTVY Trigger: GTAGACTGTAAGCCAAAGGAAAGAAGACAGTTTCTTAAGATAGCAAACTGGGCGTTTTGTTGCAGGGAGTCCTGAAGTTGTATTTGACAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| 3UTR-3UTR CAA 90 bp | AAACTGTCAAATACAACTTCAGGACTCCCTGCAACAAAACGCCCAGTTTGCTATACTGTCTTCTTTCCTTaGGCTTACAGTCTACACCAT | + |
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Preference number: 3 (lower is better) Translates to: KLSNTTSGLPATKRPVCYTVFFP*AYSLHH Trigger: ATGGTGTAGACTGTAAGCCAAAGGAAAGAAGACAGT...ATAGCAAACTGGGCGTTTTGTTGCAGGGAGTCCTGAAGTTGTATTTGACAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| 3UTR GCA 72 bp | GTAATAAAGGCCATAAAAATAACAGCTCTGCCGTATTaGACCGATAAATTAATTCAGTTGGCTTCCCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: VIKAIKITALPY*TDKLIQLASPG Trigger: ACCTGGGGAAGCCAACTGAATTAATTTATCGGTGCAATACGGCAGAGCTGTTATTTTTATGGCCTTTATTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | CAGTTGGCTTCCCCAGGTCCCCACCAAAGAGCTTTCGAATCCGAACTGGAAGACGCCTCGGTCCCGCGCTaGGCAGCAGGCTGGAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: QLASPGPHQRAFESELEDASVPR*AAGWRR Trigger: ACGCCTCCAGCCTGCTGCCCAGCGCGGGACCGAGGC...GTCTTCCAGTTCGGATTCGAAAGCTCTTTGGTGGGGACCTGGGGAAGCCAACTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | TCACAGGATTTCTTAACACTTGGGACAAGAGTCTCGCTGGAGTCCTCATGCGGTTCGGCCGCCTTAGCGTaGATCCGGGGCACGCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SQDFLTLGTRVSLESSCGSAALA*IRGTPS Trigger: CGAGGGCGTGCCCCGGATCCACGCTAAGGCGGCCGA...ACCGCATGAGGACTCCAGCGAGACTCTTGTCCCAAGTGTTAAGAAATCCTGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | CAGTTGGCTTCCCCAGGTCCCCACCAAAGAGCTTTCGAATCCGAACTGGAAGACCCGCAGCCAGGGAAGTaGTCCTCGGTCCGAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: QLASPGPHQRAFESELEDPQPGK*SSVRNR Trigger: CCTGTTTCGGACCGAGGACCACTTCCCTGGCTGCGG...GTCTTCCAGTTCGGATTCGAAAGCTCTTTGGTGGGGACCTGGGGAAGCCAACTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR GCA 90 bp | GCTTCCCCAGGTCCCCACCAAAGAGCTTTCGAATCCGAACTGGAAGACATAGAGCCATCCTGGCCACGCTaGTCCCGATCATCCGCACGA | + |
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Preference number: 4 (lower is better) Translates to: ASPGPHQRAFESELEDIEPSWPR*SRSSAR Trigger: TCGTGCGGATGATCGGGAGCAGCGTGGCCAGGATGG...CTCTATGTCTTCCAGTTCGGATTCGAAAGCTCTTTGGTGGGGACCTGGGGAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | TCACAGGATTTCTTAACACTTGGGACAAGAGTCTCGCTGGAGTCCTCATGCGGTTGGCTCTGCGAGACGTaGCCGCTGTCCCCGCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: SQDFLTLGTRVSLESSCGWLCET*PLSPLH Trigger: GTGGAGCGGGGACAGCGGCCACGTCTCGCAGAGCCA...ACCGCATGAGGACTCCAGCGAGACTCTTGTCCCAAGTGTTAAGAAATCCTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | GTCAAACTGTCAAATACAACTTCAGGACTCCCTGCAACAAAACGCCCAGTTTGCCAGCGCCTCCACCTCTaGCCTCGGTCCCGCGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: VKLSNTTSGLPATKRPVCQRLHL*PRSRAG Trigger: CCCAGCGCGGGACCGAGGCCAGAGGTGGAGGCGCTG...GCAAACTGGGCGTTTTGTTGCAGGGAGTCCTGAAGTTGTATTTGACAGTTTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR GCA 90 bp | TATTGCACCGATAAATTAATTCAGTTGGCTTCCCCAGGTCCCCACCAAAGAGCTGCGCTGCTGTGGCTCTaGGAGACGTGGCCGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: YCTDKLIQLASPGPHQRAALLWL*ETWPLS Trigger: GGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGC...AGCTCTTTGGTGGGGACCTGGGGAAGCCAACTGAATTAATTTATCGGTGCAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR GCA 90 bp | GCTTCCCCAGGTCCCCACCAAAGAGCTTTCGAATCCGAACTGGAAGACATAGAGGGATCATGTCCAGCATaGCCACGAACTCGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: ASPGPHQRAFESELEDIEGSCPA*PRTRPP Trigger: AGGTGGACGAGTTCGTGGGCATGCTGGACATGATCC...CTCTATGTCTTCCAGTTCGGATTCGAAAGCTCTTTGGTGGGGACCTGGGGAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR GCA 90 bp | GTCAAACTGTCAAATACAACTTCAGGACTCCCTGCAACAAAACGCCCAGTTTGCTCGGCCTTGGCGACCTaGTCCTCCATCCTGGCCACG | + |
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Preference number: 4 (lower is better) Translates to: VKLSNTTSGLPATKRPVCSALAT*SSILAT Trigger: CGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGA...GCAAACTGGGCGTTTTGTTGCAGGGAGTCCTGAAGTTGTATTTGACAGTTTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | ACTGTTCACTGTAATAAAGGCCATAAAAATAACAGCTCTGCCGTATTGCACCGACGCTGGGCAGCAGGCTaGAGGCGTAGCCCGAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: TVHCNKGHKNNSSAVLHRRWAAG*RRSPRR Trigger: CCGCCTCGGGCTACGCCTCCAGCCTGCTGCCCAGCG...TCGGTGCAATACGGCAGAGCTGTTATTTTTATGGCCTTTATTACAGTGAACAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CCA 90 bp | AAACTGTCAAATACAACTTCAGGACTCCCTGCAACAAAACGCCCAGTTTGCTATGCTCGGCTTCGGCCTTaGCGACCTGCTCCTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: KLSNTTSGLPATKRPVCYARLRP*RPAPPS Trigger: GGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGC...ATAGCAAACTGGGCGTTTTGTTGCAGGGAGTCCTGAAGTTGTATTTGACAGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| 3UTR CAA 72 bp | ACAGCTCTGCCGTATTGCACCGATAAATTAATTCAGTaGGCTTCCCCAGGTCCCCACCAAAGAGCTTTCGAA | + |
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Preference number: 4 (lower is better) Translates to: TALPYCTDKLIQ*ASPGPHQRAFE Trigger: TTCGAAAGCTCTTTGGTGGGGACCTGGGGAAGCCAACTGAATTAATTTATCGGTGCAATACGGCAGAGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | CCAGCGCCTCCACCTCTGGCCTCGGTCCCGCGCTGGGCAGCAGGCTaGAGGCGTAGCCCGAGGCGGCGCGGCGCAGCAGCGGCAGGTCGC | + |
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Preference number: 5 (lower is better) Translates to: PAPPPLASVPRWAAG*RRSPRRRGAAAAGR Trigger: GCGACCTGCCGCTGCTGCGCCGCGCCGCCTCGGGCTACGCCTCCAGCCTGCTGCCCAGCGCGGGACCGAGGCCAGAGGTGGAGGCGCTGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 90 bp | CCGGCGCGTCCTCGGGGCCGTCATCGTCCCACGGCCCGGACGCGCTaGTGTGGCTCTGCGAGACGTGGCCGCTGTCCCCGCTCCACGCGG | + |
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Preference number: 5 (lower is better) Translates to: PARPRGRHRPTARTR*CGSARRGRCPRSTR Trigger: CCGCGTGGAGCGGGGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGCGTCCGGGCCGTGGGACGATGACGGCCCCGAGGACGCGCCGG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | GCGTCCTCGGGGCCGTCATCGTCCCACGGCCCGGACGCGCTGCTGTaGCTCTGCGAGACGTGGCCGCTGTCCCCGCTCCACGCGGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: ASSGPSSSHGPDALL*LCETWPLSPLHAAP Trigger: GGGCGCCGCGTGGAGCGGGGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGCGTCCGGGCCGTGGGACGATGACGGCCCCGAGGACGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | TCATCGTCCCACGGCCCGGACGCGCTGCTGTGGCTCTGCGAGACGTaGCCGCTGTCCCCGCTCCACGCGGCGCCCAACGGCTCGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: SSSHGPDALLWLCET*PLSPLHAAPNGSAS Trigger: GGAGGCCGAGCCGTTGGGCGCCGCGTGGAGCGGGGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGCGTCCGGGCCGTGGGACGATGA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 90 bp | GGCCCGCTGGGCGCCGACCTGAAGAGAGCGGGGACGCTGATGGTATaGAGCAGCCTCCGGAAGGCCCGCGGGAAGGTCCCCAGCTCGGCT | + |
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Preference number: 5 (lower is better) Translates to: GPLGADLKRAGTLMV*SSLRKARGKVPSSA Trigger: AGCCGAGCTGGGGACCTTCCCGCGGGCCTTCCGGAGGCTGCTGCATACCATCAGCGTCCCCGCTCTCTTCAGGTCGGCGCCCAGCGGGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | TGGTCCTCGGTCCGAAACAGGACTGGCGGCTCGTACGCCGCGCGCTaGGGCCCGCTGGGCGCCGACCTGAAGAGAGCGGGGACGCTGATG | + |
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Preference number: 5 (lower is better) Translates to: WSSVRNRTGGSYAAR*GPLGADLKRAGTLM Trigger: CATCAGCGTCCCCGCTCTCTTCAGGTCGGCGCCCAGCGGGCCCCAGCGCGCGGCGTACGAGCCGCCAGTCCTGTTTCGGACCGAGGACCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | TCTGTCACCGCAGCCAGGGAAGTGGTCCTCGGTCCGAAACAGGACTaGCGGCTCGTACGCCGCGCGCTGGGGCCCGCTGGGCGCCGACCT | + |
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Preference number: 5 (lower is better) Translates to: SVTAAREVVLGPKQD*RLVRRALGPAGRRP Trigger: AGGTCGGCGCCCAGCGGGCCCCAGCGCGCGGCGTACGAGCCGCCAGTCCTGTTTCGGACCGAGGACCACTTCCCTGGCTGCGGTGACAGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | GCCTCCGGAAGGCCCGCGGGAAGGTCCCCAGCTCGGCTTCGGCCTTaGCGACCTGCTCCTCCATCCTGGCCACGCTGCTCCCGATCATCC | + |
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Preference number: 5 (lower is better) Translates to: ASGRPAGRSPARLRP*RPAPPSWPRCSRSS Trigger: GGATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCTTCCCGCGGGCCTTCCGGAGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 90 bp | TCGGCCGCCTTAGCGTGGATCCGGGGCACGCCCTCGCCCACCACATaGGACGAGTCCCCGCGGATCATGTCCAGCATGCCCACGAACTCG | + |
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Preference number: 5 (lower is better) Translates to: SAALAWIRGTPSPTT*DESPRIMSSMPTNS Trigger: CGAGTTCGTGGGCATGCTGGACATGATCCGCGGGGACTCGTCGCATGTGGTGGGCGAGGGCGTGCCCCGGATCCACGCTAAGGCGGCCGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 90 bp | AAGGCCCGCGGGAAGGTCCCCAGCTCGGCTTCGGCCTTGGCGACCTaGTCCTCCATCCTGGCCACGCTGCTCCCGATCATCCGCACGAAG | + |
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Preference number: 5 (lower is better) Translates to: KARGKVPSSASALAT*SSILATLLPIIRTK Trigger: CTTCGTGCGGATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCTTCCCGCGGGCCTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 90 bp | GCTCGGCTTCGGCCTTGGCGACCTGCTCCTCCATCCTGGCCACGCTaGTCCCGATCATCCGCACGAAGGCCTCCAGCTTGTCGATCCGGC | + |
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Preference number: 5 (lower is better) Translates to: ARLRPWRPAPPSWPR*SRSSARRPPACRSG Trigger: GCCGGATCGACAAGCTGGAGGCCTTCGTGCGGATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 90 bp | AGGTCCCCAGCTCGGCTTCGGCCTTGGCGACCTGCTCCTCCATCCTaGCCACGCTGCTCCCGATCATCCGCACGAAGGCCTCCAGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: RSPARLRPWRPAPPS*PRCSRSSARRPPAC Trigger: ACAAGCTGGAGGCCTTCGTGCGGATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS-3UTR CAA 90 bp | AAGGCCATAAAAATAACAGCTCTGCCGTATTGCACCGATAAATTAATTCAGTTGAGCTCGGCTTCGGCCTaGGCGACCTGCTCCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: KAIKITALPYCTDKLIQLSSASA*ATCSSI Trigger: GATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCT...CAACTGAATTAATTTATCGGTGCAATACGGCAGAGCTGTTATTTTTATGGCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 72 bp | CCACCTCTGGCCTCGGTCCCGCGCTGGGCAGCAGGCTaGAGGCGTAGCCCGAGGCGGCGCGGCGCAGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: PPLASVPRWAAG*RRSPRRRGAAA Trigger: CGCTGCTGCGCCGCGCCGCCTCGGGCTACGCCTCCAGCCTGCTGCCCAGCGCGGGACCGAGGCCAGAGGTGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 72 bp | CACGGCCCGGACGCGCTGCTGTGGCTCTGCGAGACGTaGCCGCTGTCCCCGCTCCACGCGGCGCCCAACGGC | + |
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Preference number: 6 (lower is better) Translates to: HGPDALLWLCET*PLSPLHAAPNG Trigger: GCCGTTGGGCGCCGCGTGGAGCGGGGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGCGTCCGGGCCGTG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 72 bp | CCTCGGGGCCGTCATCGTCCCACGGCCCGGACGCGCTaGTGTGGCTCTGCGAGACGTGGCCGCTGTCCCCGC | + |
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Preference number: 6 (lower is better) Translates to: PRGRHRPTARTR*CGSARRGRCPR Trigger: GCGGGGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGCGTCCGGGCCGTGGGACGATGACGGCCCCGAGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 72 bp | GGGCCGTCATCGTCCCACGGCCCGGACGCGCTGCTGTaGCTCTGCGAGACGTGGCCGCTGTCCCCGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: GPSSSHGPDALL*LCETWPLSPLH Trigger: GTGGAGCGGGGACAGCGGCCACGTCTCGCAGAGCCACAGCAGCGCGTCCGGGCCGTGGGACGATGACGGCCC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 72 bp | GTCCGAAACAGGACTGGCGGCTCGTACGCCGCGCGCTaGGGCCCGCTGGGCGCCGACCTGAAGAGAGCGGGG | + |
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Preference number: 6 (lower is better) Translates to: VRNRTGGSYAAR*GPLGADLKRAG Trigger: CCCCGCTCTCTTCAGGTCGGCGCCCAGCGGGCCCCAGCGCGCGGCGTACGAGCCGCCAGTCCTGTTTCGGAC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 72 bp | GCAGCCAGGGAAGTGGTCCTCGGTCCGAAACAGGACTaGCGGCTCGTACGCCGCGCGCTGGGGCCCGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: AAREVVLGPKQD*RLVRRALGPAG Trigger: CCCAGCGGGCCCCAGCGCGCGGCGTACGAGCCGCCAGTCCTGTTTCGGACCGAGGACCACTTCCCTGGCTGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CCA 72 bp | AGGCCCGCGGGAAGGTCCCCAGCTCGGCTTCGGCCTTaGCGACCTGCTCCTCCATCCTGGCCACGCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: RPAGRSPARLRP*RPAPPSWPRCS Trigger: GGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCTTCCCGCGGGCCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CAA 72 bp | AAGGCCCGCGGGAAGGTCCCCAGCTCGGCTTCGGCCTaGGCGACCTGCTCCTCCATCCTGGCCACGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: KARGKVPSSASA*ATCSSILATLL Trigger: GAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCTTCCCGCGGGCCTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS CAA 90 bp | AGCCTCCGGAAGGCCCGCGGGAAGGTCCCCAGCTCGGCTTCGGCCTaGGCGACCTGCTCCTCCATCCTGGCCACGCTGCTCCCGATCATC | + |
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Preference number: 6 (lower is better) Translates to: SLRKARGKVPSSASA*ATCSSILATLLPII Trigger: GATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCTTCCCGCGGGCCTTCCGGAGGCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 72 bp | TTAGCGTGGATCCGGGGCACGCCCTCGCCCACCACATaGGACGAGTCCCCGCGGATCATGTCCAGCATGCCC | + |
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Preference number: 6 (lower is better) Translates to: LAWIRGTPSPTT*DESPRIMSSMP Trigger: GGGCATGCTGGACATGATCCGCGGGGACTCGTCGCATGTGGTGGGCGAGGGCGTGCCCCGGATCCACGCTAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 72 bp | GGGAAGGTCCCCAGCTCGGCTTCGGCCTTGGCGACCTaGTCCTCCATCCTGGCCACGCTGCTCCCGATCATC | + |
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Preference number: 6 (lower is better) Translates to: GKVPSSASALAT*SSILATLLPII Trigger: GATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCGAAGCCGAGCTGGGGACCTTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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| CDS GCA 72 bp | CGGCCTTGGCGACCTGCTCCTCCATCCTGGCCACGCTaGTCCCGATCATCCGCACGAAGGCCTCCAGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: RPWRPAPPSWPR*SRSSARRPPAC Trigger: ACAAGCTGGAGGCCTTCGTGCGGATGATCGGGAGCAGCGTGGCCAGGATGGAGGAGCAGGTCGCCAAGGCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071949.5 |
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