Pregenerated sensors for BLOC1S3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057667Ensembl transcript IDs: ENSMUST00000077408.8
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAATTGAACCCAGGGCCGCCCACACTAAGCGTACACGACACCACTaGGCTACAGTCTCACCCCACCACCCGAGCTCCCTTCCACATAAG | + |
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Preference number: 1 (lower is better) Translates to: GIEPRAAHTKRTRHH*ATVSPHHPSSLPHK Trigger: CTTATGTGGAAGGGAGCTCGGGTGGTGGGGTGAGACTGTAGCTCAGTGGTGTCGTGTACGCTTAGTGTGGGCGGCCCTGGGTTCAATTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 90 bp | CCTCAAGCTCAGATCTGCCTGCCTCTGCCCAGCCAGTGCTGGGACTaGGGTGTGTGCCACCACTGCCTGACATGCACCAGTTACATGTTT | + |
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Preference number: 1 (lower is better) Translates to: PQAQICLPLPSQCWD*GVCHHCLTCTSYMF Trigger: AAACATGTAACTGGTGCATGTCAGGCAGTGGTGGCACACACCTCAGTCCCAGCACTGGCTGGGCAGAGGCAGGCAGATCTGAGCTTGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 90 bp | CCCCTTCTTCTAGGGAACTCAAAGGTCAACAAGTCCTTTCTGTGGTaGCCTTGTGCCAGCGGCACAGCAGAGCTTCGGGAGAGGACAGCC | + |
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Preference number: 1 (lower is better) Translates to: PLLLGNSKVNKSFLW*PCASGTAELRERTA Trigger: GGCTGTCCTCTCCCGAAGCTCTGCTGTGCCGCTGGCACAAGGCCACCACAGAAAGGACTTGTTGACCTTTGAGTTCCCTAGAAGAAGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 90 bp | CTAGCCTTAGCTCAGCCGGGGACCATGGTACCTTTCAAGGTCCCATaGTTTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCT | + |
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Preference number: 1 (lower is better) Translates to: LALAQPGTMVPFKVP*FMEQECGVKSRSSP Trigger: AGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCATGGGACCTTGAAAGGTACCATGGTCCCCGGCTGAGCTAAGGCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 90 bp | TACCCCCTTCTTCTAGGGAACTCAAAGGTCAACAAGTCCTTTCTGTaGTGGCCTTGTGCCAGCGGCACAGCAGAGCTTCGGGAGAGGACA | + |
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Preference number: 1 (lower is better) Translates to: YPLLLGNSKVNKSFL*WPCASGTAELRERT Trigger: TGTCCTCTCCCGAAGCTCTGCTGTGCCGCTGGCACAAGGCCACCACAGAAAGGACTTGTTGACCTTTGAGTTCCCTAGAAGAAGGGGGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 90 bp | GCAGCCCTACTGGAAGGTATGCATGCAGTAGGGATGGCTTGTGTGTaGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTGGTCTGTG | + |
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Preference number: 1 (lower is better) Translates to: AALLEGMHAVGMACV*LCTWSPLSVLSWSV Trigger: CACAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCATCCCTACTGCATGCATACCTTCCAGTAGGGCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 90 bp | GCTTGTGTGTGGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTaGTCTGTGTACATCTACCCAGTCCCTGACACAGGTGGAGTTAGG | + |
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Preference number: 1 (lower is better) Translates to: ACVWLCTWSPLSVLS*SVYIYPVPDTGGVR Trigger: CCTAACTCCACCTGTGTCAGGGACTGGGTAGATGTACACAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 90 bp | GTGTCATGTCTCTATAGCGATCAAAACACCAGGAGGCGCTGCCCCTaGCACAAAGGCCTAAGAATTAGGGTTACTACCCAGGCCCTAGGT | + |
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Preference number: 1 (lower is better) Translates to: VSCLYSDQNTRRRCP*HKGLRIRVTTQALG Trigger: ACCTAGGGCCTGGGTAGTAACCCTAATTCTTAGGCCTTTGTGTCAGGGGCAGCGCCTCCTGGTGTTTTGATCGCTATAGAGACATGACAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 90 bp | CAGAGTTGTAAACAAGTGCTTGTGAAGAGTGGCTGGACCCTCAGGTaGGGTGGCACAGCCTCCTTATACCCCCTTCTTCTAGGGAACTCA | + |
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Preference number: 1 (lower is better) Translates to: QSCKQVLVKSGWTLR*GGTASLYPLLLGNS Trigger: TGAGTTCCCTAGAAGAAGGGGGTATAAGGAGGCTGTGCCACCTCACCTGAGGGTCCAGCCACTCTTCACAAGCACTTGTTTACAACTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 90 bp | GAGAGGACAGCCTTGCACATCACCTGTCACATACAGGCCCTTACATaGACATACACAGCTCCTGACATCTGCAGACAGATCTGCACATCC | + |
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Preference number: 1 (lower is better) Translates to: ERTALHITCHIQALT*TYTAPDICRQICTS Trigger: GGATGTGCAGATCTGTCTGCAGATGTCAGGAGCTGTGTATGTGCATGTAAGGGCCTGTATGTGACAGGTGATGTGCAAGGCTGTCCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 90 bp | CATCCAGGCACACCTGAGCCCACAATACAGTCACACCTGCATGCATaGAGACACACCTGTTTATACACAGGAAGCTCTACACACATGCAA | + |
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Preference number: 1 (lower is better) Translates to: HPGTPEPTIQSHLHA*RHTCLYTGSSTHMQ Trigger: TTGCATGTGTGTAGAGCTTCCTGTGTATAAACAGGTGTGTCTGCATGCATGCAGGTGTGACTGTATTGTGGGCTCAGGTGTGCCTGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCTTGTGTGTGGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTGGTCTGAAGCTCAGATCTGCCTaGCTCTGCCCAGCCAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: WLVCGCVHGAPSLSFLGLKLRSA*LCPASA Trigger: AGCACTGGCTGGGCAGAGGCAGGCAGATCTGAGCTT...CAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | CACAAATCTATGGGGGTGGGGCTGCTGCTAGTGACAGGCCTGGTGCCCTGGAGCGAAGCTCTACACACATaGAAGCACACGTGCTTACAC | + |
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Preference number: 2 (lower is better) Translates to: HKSMGVGLLLVTGLVPWSEALHT*KHTCLH Trigger: GTGTAAGCACGTGTGCTTGCATGTGTGTAGAGCTTC...GCTCCAGGGCACCAGGCCTGTCACTAGCAGCAGCCCCACCCCCATAGATTTGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CAA 90 bp | AGCAGGAGCAGCCCTACTGGAAGGTATGCATGCAGTAGGGATGGCTaGTGTGTGGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: SRSSPTGRYACSRDG*CVAVYMEPPLCPFL Trigger: CAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCATCCCTACTGCATGCATACCTTCCAGTAGGGCTGCTCCTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CCA 90 bp | CACAAATCTATGGGGGTGGGGCTGCTGCTAGTGACAGGCCTGGTGCCCTGGAGCGAAACAGGACCAGAATaGATAGGGGCTAAGCTACTT | + |
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Preference number: 2 (lower is better) Translates to: HKSMGVGLLLVTGLVPWSETGPE*IGAKLL Trigger: AAGTAGCTTAGCCCCTATCCATTCTGGTCCTGTTTC...GCTCCAGGGCACCAGGCCTGTCACTAGCAGCAGCCCCACCCCCATAGATTTGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGAAGAGTGGCTGGACCCTCAGGTGAGGTGGCACAGCCTCCTTATACCCCCTTCCTCGGGTCAGGAGTaGTCATCATTTAGGGATGTA | + |
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Preference number: 2 (lower is better) Translates to: CEEWLDPQVRWHSLLIPPSSGQE*SSFRDV Trigger: TACATCCCTAAATGATGATCACTCCTGACCCGAGGA...AGGGGGTATAAGGAGGCTGTGCCACCTCACCTGAGGGTCCAGCCACTCTTCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCCCTCTCTGTCCTTTCTTGGTCTGTGTACATCTACCCAGTCCCTGACACAGAGTTTGACCGGGCAGTaGTGGCACACGCCTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: APSLSFLGLCTSTQSLTQSLTGQ*WHTPLI Trigger: GATTAAAGGCGTGTGCCACCACTGCCCGGTCAAACT...CTGTGTCAGGGACTGGGTAGATGTACACAGACCAAGAAAGGACAGAGAGGGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTTTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGGTGTGGCTGTGTACATaGAGCCCCCTCTCTGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: CFMEQECGVKSRSSPTGRVWLCT*SPLSVL Trigger: AAGGACAGAGAGGGGGCTCCATGTACACAGCCACAC...CCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR TCA 90 bp | TGGCTTGTGTGTGGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTGGTCTGCACATACACAGCTCCTaGCATCTGCAGACAGATCTG | + |
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Preference number: 2 (lower is better) Translates to: WLVCGCVHGAPSLSFLGLHIHSS*HLQTDL Trigger: CAGATCTGTCTGCAGATGTCAGGAGCTGTGTATGTG...CAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | CTTTCTTGGTCTGTGTACATCTACCCAGTCCCTGACACAGGTGGAGTTAGGGCAGGTGTGTGCCACCACTaGCTGACATGCACCAGTTAC | + |
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Preference number: 2 (lower is better) Translates to: LSWSVYIYPVPDTGGVRAGVCHH*LTCTSY Trigger: GTAACTGGTGCATGTCAGGCAGTGGTGGCACACACC...TGCCCTAACTCCACCTGTGTCAGGGACTGGGTAGATGTACACAGACCAAGAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGGGGAGAGGACAGCCTTaGACATCACCTGTCACATAC | + |
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Preference number: 2 (lower is better) Translates to: CFMEQECGVKSRSSPTGRGRGQP*TSPVTY Trigger: GTATGTGACAGGTGATGTGCAAGGCTGTCCTCTCCC...CCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CAA 90 bp | GCGAGGATTCGGCTTCTGTCGGCATTGATCAAATGCTACCACGCATaGGAGGCCTCGGTGATCCAGGAACAAAAACAGAGTCAGATGCCA | + |
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Preference number: 2 (lower is better) Translates to: ARIRLLSALIKCYHA*EASVIQEQKQSQMP Trigger: TGGCATCTGACTCTGTTTTTGTTCCTGGATCACCGAGGCCTCCAATGCGTGGTAGCATTTGATCAATGCCGACAGAAGCCGAATCCTCGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR TCA 90 bp | TTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGTATGTGTGCCACCACTGCCTaGCATGCACCAGTTACATGT | + |
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Preference number: 2 (lower is better) Translates to: LWSKSVGLRAGAALLEGMCATTA*HAPVTC Trigger: ACATGTAACTGGTGCATGTCAGGCAGTGGTGGCACA...CATACCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGACAGCTCCTGACATCTaGAGACAGATCTGCACATCC | + |
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Preference number: 2 (lower is better) Translates to: CFMEQECGVKSRSSPTGRTAPDI*RQICTS Trigger: GGATGTGCAGATCTGTCTGCAGATGTCAGGAGCTGT...CCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTGGTCTGTGTACATTTAATCCCAGCACTTaGGAGGCAGAAGCAGGTGAA | + |
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Preference number: 2 (lower is better) Translates to: VCGCVHGAPSLSFLGLCTFNPST*EAEAGE Trigger: TTCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAA...TGTACACAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCCCTCTCTGTCCTTTCTTGGTCTGTGTACATCTACCCAGTCCCTGACACAGAAGAAAGCAAACCTCTaGCTTTGCCCAAGAGTAAAG | + |
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Preference number: 2 (lower is better) Translates to: APSLSFLGLCTSTQSLTQKKANL*LCPRVK Trigger: CTTTACTCTTGGGCAAAGCCAGAGGTTTGCTTTCTT...CTGTGTCAGGGACTGGGTAGATGTACACAGACCAAGAAAGGACAGAGAGGGGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR TCA 90 bp | TGCAGACACACCTGTTTATACACAGGAAGCTCTACACACATGCAAGCACACGTGCATTGGAGGCCTCGGTaGTCCAGGAACAAAAACAGA | + |
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Preference number: 2 (lower is better) Translates to: CRHTCLYTGSSTHMQAHVHWRPR*SRNKNR Trigger: TCTGTTTTTGTTCCTGGATCACCGAGGCCTCCAATG...CACGTGTGCTTGCATGTGTGTAGAGCTTCCTGTGTATAAACAGGTGTGTCTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGAAAAACAGAGTCAGATaGCACAGGTGGTACGAATGT | + |
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Preference number: 2 (lower is better) Translates to: CFMEQECGVKSRSSPTGRKNRVR*HRWYEC Trigger: ACATTCGTACCACCTGTGGCATCTGACTCTGTTTTT...CCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | GGTCTGCATTTGGCCACAGCGGTCGGTAAGAGGGATATGTGTAAGAGGAAGGTAGAATATCAAAGAAGATaGGAGGATTCGGCTTCTGTC | + |
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Preference number: 2 (lower is better) Translates to: GLHLATAVGKRDMCKRKVEYQRR*EDSASV Trigger: GACAGAAGCCGAATCCTCGCATCTTCTTTGATATTC...TACCTTCCTCTTACACATATCCCTCTTACCGACCGCTGTGGCCAAATGCAGACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR GCA 90 bp | GTCTGCATTTGGCCACAGCGGTCGGTAAGAGGGATATGTGTAAGAGGAAGGTATGCAAACCTCTGGCTTTaGCCAAGAGTAAAGCTGAAT | + |
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Preference number: 2 (lower is better) Translates to: VCIWPQRSVRGICVRGRYANLWL*PRVKLN Trigger: ATTCAGCTTTACTCTTGGGCAAAGCCAGAGGTTTGC...ATACCTTCCTCTTACACATATCCCTCTTACCGACCGCTGTGGCCAAATGCAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR TCA 90 bp | TGCAGACACACCTGTTTATACACAGGAAGCTCTACACACATGCAAGCACACGTGCTTGTTTGTTTCTTTTaGAGCAGGGTGGTCCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: CRHTCLYTGSSTHMQAHVLVCFF*SRVVLG Trigger: TCCTAGGACCACCCTGCTTCAAAAGAAACAAACAAG...CACGTGTGCTTGCATGTGTGTAGAGCTTCCTGTGTATAAACAGGTGTGTCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CCA 90 bp | TTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGTATGGTAGATTTGTATTTGTaGTGTCATGTCTCTATAGCG | + |
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Preference number: 2 (lower is better) Translates to: LWSKSVGLRAGAALLEGMVDLYL*CHVSIA Trigger: CGCTATAGAGACATGACACCACAAATACAAATCTAC...CATACCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR TCA 90 bp | TGCAGACACACCTGTTTATACACAGGAAGCTCTACACACATGCAAGCACACGTGCAGAAAGAGACACAGTaGGTGGTAGATTTGTATTTG | + |
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Preference number: 2 (lower is better) Translates to: CRHTCLYTGSSTHMQAHVQKETQ*VVDLYL Trigger: CAAATACAAATCTACCACTCACTGTGTCTCTTTCTG...CACGTGTGCTTGCATGTGTGTAGAGCTTCCTGTGTATAAACAGGTGTGTCTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 72 bp | CCAGCGGCACAGCAGAGCTTCGGGAGAGGACAGCCTTaGACATCACCTGTCACATACAGGCCCTTACATGCA | + |
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Preference number: 3 (lower is better) Translates to: PAAQQSFGRGQP*TSPVTYRPLHA Trigger: TGCATGTAAGGGCCTGTATGTGACAGGTGATGTGCAAGGCTGTCCTCTCCCGAAGCTCTGCTGTGCCGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 72 bp | CTCAAAGGTCAACAAGTCCTTTCTGTGGTGGCCTTGTaGCAGCGGCACAGCAGAGCTTCGGGAGAGGACAGC | + |
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Preference number: 3 (lower is better) Translates to: LKGQQVLSVVAL*QRHSRASGEDS Trigger: GCTGTCCTCTCCCGAAGCTCTGCTGTGCCGCTGGCACAAGGCCACCACAGAAAGGACTTGTTGACCTTTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 72 bp | GCTCAGCCGGGGACCATGGTACCTTTCAAGGTCCCATaGTTTATGGAGCAAGAGTGTGGGGTTAAGAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: AQPGTMVPFKVP*FMEQECGVKSR Trigger: CCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCATGGGACCTTGAAAGGTACCATGGTCCCCGGCTGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 72 bp | AGTGCTTGTGAAGAGTGGCTGGACCCTCAGGTGAGGTaGCACAGCCTCCTTATACCCCCTTCTTCTAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: SACEEWLDPQVR*HSLLIPPSSRE Trigger: TTCCCTAGAAGAAGGGGGTATAAGGAGGCTGTGCCACCTCACCTGAGGGTCCAGCCACTCTTCACAAGCACT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 72 bp | CGGGGACCATGGTACCTTTCAAGGTCCCATGCTTTATaGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: RGPWYLSRSHAL*SKSVGLRAGAA Trigger: GGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAAAGCATGGGACCTTGAAAGGTACCATGGTCCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CAA 90 bp | TGTGAAGAGTGGCTGGACCCTCAGGTGAGGTGGCACAGCCTCCTTATACCCCCTTGTGGTTTCTGGGGTTaGAACTCAGGACCTCTACTT | + |
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Preference number: 3 (lower is better) Translates to: CEEWLDPQVRWHSLLIPPCGFWG*NSGPLL Trigger: AAGTAGAGGTCCTGAGTTCAAACCCCAGAAACCACA...AGGGGGTATAAGGAGGCTGTGCCACCTCACCTGAGGGTCCAGCCACTCTTCACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTTGGTCTGTGTACATCTACCCAGTCCCTGACACAGGTGGAGTTAGGGCAACCAAACCCAGGGCCTaGCACTTGCTAGGCAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: LSWSVYIYPVPDTGGVRATKPRA*HLLGKS Trigger: GCTCTTGCCTAGCAAGTGCAAGGCCCTGGGTTTGGT...TGCCCTAACTCCACCTGTGTCAGGGACTGGGTAGATGTACACAGACCAAGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 72 bp | TGGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCTTaGTCTGTGTACATCTACCCAGTCCCTGACACAGGT | + |
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Preference number: 3 (lower is better) Translates to: WLCTWSPLSVLS*SVYIYPVPDTG Trigger: ACCTGTGTCAGGGACTGGGTAGATGTACACAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 72 bp | CATGCAGTAGGGATGGCTTGTGTGTGGCTGTGTACATaGAGCCCCCTCTCTGTCCTTTCTTGGTCTGTGTAC | + |
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Preference number: 3 (lower is better) Translates to: HAVGMACVWLCT*SPLSVLSWSVY Trigger: GTACACAGACCAAGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCATCCCTACTGCATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 72 bp | CTGGAAGGTATGCATGCAGTAGGGATGGCTTGTGTGTaGCTGTGTACATGGAGCCCCCTCTCTGTCCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: LEGMHAVGMACV*LCTWSPLSVLS Trigger: AGAAAGGACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCATCCCTACTGCATGCATACCTTCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR-3UTR CAA 90 bp | TTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGTATGCGGGAGAGGACAGCCTaGCACATCACCTGTCACATA | + |
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Preference number: 3 (lower is better) Translates to: LWSKSVGLRAGAALLEGMRERTA*HITCHI Trigger: TATGTGACAGGTGATGTGCAAGGCTGTCCTCTCCCG...CATACCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 72 bp | GCCAGTGCTGGGACTGAGGTGTGTGCCACCACTGCCTaGCATGCACCAGTTACATGTTTTGTTTTTGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: ASAGTEVCATTA*HAPVTCFVFEE Trigger: CTCCTCAAAAACAAAACATGTAACTGGTGCATGTCAGGCAGTGGTGGCACACACCTCAGTCCCAGCACTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 72 bp | AAACAAGTGCTTGTGAAGAGTGGCTGGACCCTCAGGTaGGGTGGCACAGCCTCCTTATACCCCCTTCTTCTA | + |
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Preference number: 3 (lower is better) Translates to: KQVLVKSGWTLR*GGTASLYPLLL Trigger: TAGAAGAAGGGGGTATAAGGAGGCTGTGCCACCTCACCTGAGGGTCCAGCCACTCTTCACAAGCACTTGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 72 bp | GTTAAGAGCAGGAGCAGCCCTACTGGAAGGTATGCATaGAGTAGGGATGGCTTGTGTGTGGCTGTGTACATG | + |
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Preference number: 3 (lower is better) Translates to: VKSRSSPTGRYA*SRDGLCVAVYM Trigger: CATGTACACAGCCACACACAAGCCATCCCTACTGCATGCATACCTTCCAGTAGGGCTGCTCCTGCTCTTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 72 bp | TCACATACAGGCCCTTACATGCACATACACAGCTCCTaGCATCTGCAGACAGATCTGCACATCCAGGCACAC | + |
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Preference number: 3 (lower is better) Translates to: SHTGPYMHIHSS*HLQTDLHIQAH Trigger: GTGTGCCTGGATGTGCAGATCTGTCTGCAGATGTCAGGAGCTGTGTATGTGCATGTAAGGGCCTGTATGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR GCA 72 bp | GCCTTGCACATCACCTGTCACATACAGGCCCTTACATaGACATACACAGCTCCTGACATCTGCAGACAGATC | + |
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Preference number: 3 (lower is better) Translates to: ALHITCHIQALT*TYTAPDICRQI Trigger: GATCTGTCTGCAGATGTCAGGAGCTGTGTATGTGCATGTAAGGGCCTGTATGTGACAGGTGATGTGCAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CCA 72 bp | CTCAATACAGATGGTTGTGAGCCACCATGTGGTTTCTaGGGTTTGAACTCAGGACCTCTACTTTCCAGCCCC | + |
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Preference number: 3 (lower is better) Translates to: LNTDGCEPPCGF*GLNSGPLLSSP Trigger: GGGGCTGGAAAGTAGAGGTCCTGAGTTCAAACCCCAGAAACCACATGGTGGCTCACAACCATCTGTATTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR TCA 72 bp | AATCCAAGTCCTTTTAGCATCCAGAAAGAGACACAGTaGGTGGTAGATTTGTATTTGTGGTGTCATGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: NPSPFSIQKETQ*VVDLYLWCHVS Trigger: AGAGACATGACACCACAAATACAAATCTACCACTCACTGTGTCTCTTTCTGGATGCTAAAAGGACTTGGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS-3UTR CCA 90 bp | TGTGAAGAGTGGCTGGACCCTCAGGTGAGGTGGCACAGCCTCCTTATACCCCCTCGACCGGCACAACCGTaGGCTCGGGCTCAGGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: CEEWLDPQVRWHSLLIPPRPAQP*ARAQAP Trigger: CGGAGCCTGAGCCCGAGCCCACGGTTGTGCCGGTCG...AGGGGGTATAAGGAGGCTGTGCCACCTCACCTGAGGGTCCAGCCACTCTTCACA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS-3UTR GCA 90 bp | TTATGGAGCAAGAGTGTGGGGTTAAGAGCAGGAGCAGCCCTACTGGAAGGTATGTCAGCCAACCGGAGCTaGAGCAGCGAGCGCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LWSKSVGLRAGAALLEGMSANRS*SSERAG Trigger: GCCTGCGCGCTCGCTGCTGCAGCTCCGGTTGGCTGA...CATACCTTCCAGTAGGGCTGCTCCTGCTCTTAACCCCACACTCTTGCTCCATAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CAA 72 bp | AGCCCTACTGGAAGGTATGCATGCAGTAGGGATGGCTaGTGTGTGGCTGTGTACATGGAGCCCCCTCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SPTGRYACSRDG*CVAVYMEPPLC Trigger: ACAGAGAGGGGGCTCCATGTACACAGCCACACACAAGCCATCCCTACTGCATGCATACCTTCCAGTAGGGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS-3UTR GCA 90 bp | TCCAGGAACAAAAACAGAGTCAGATGCCACAGGTGGTACGAATGTTCACCAAGACAGGGGTCTCCTCCGTaGCCCAAGTCTCCGCCGGAT | + |
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Preference number: 4 (lower is better) Translates to: SRNKNRVRCHRWYECSPRQGSPP*PKSPPD Trigger: ATCCGGCGGAGACTTGGGGCACGGAGGAGACCCCTG...TCTTGGTGAACATTCGTACCACCTGTGGCATCTGACTCTGTTTTTGTTCCTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| 3UTR CAA 72 bp | CAGAAAGGCTCAACAAAAGAAAGCAAACCTCTGGCTTaGCCCAAGAGTAAAGCTGAATTTAGGAAACAGGAC | + |
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Preference number: 4 (lower is better) Translates to: QKGSTKESKPLA*PKSKAEFRKQD Trigger: GTCCTGTTTCCTAAATTCAGCTTTACTCTTGGGCAAAGCCAGAGGTTTGCTTTCTTTTGTTGAGCCTTTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS GCA 90 bp | GCTGCAGCAGCGAGCGCGCAGGCGCCATGGCAGGGGTCTCCTCCGTaGCCCAAGTCTCCGCCGGATCGCGCTGCACCACGAGCGGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: AAAASAQAPWQGSPP*PKSPPDRAAPRAGA Trigger: TGCCCCCGCTCGTGGTGCAGCGCGATCCGGCGGAGACTTGGGGCACGGAGGAGACCCCTGCCATGGCGCCTGCGCGCTCGCTGCTGCAGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 90 bp | GGCTCTCAGCCAACCGGAGCTGCAGCAGCGAGCGCGCAGGCGCCATaGCAGGGGTCTCCTCCGTGCCCCAAGTCTCCGCCGGATCGCGCT | + |
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Preference number: 5 (lower is better) Translates to: GSQPTGAAAASAQAP*QGSPPCPKSPPDRA Trigger: AGCGCGATCCGGCGGAGACTTGGGGCACGGAGGAGACCCCTGCCATGGCGCCTGCGCGCTCGCTGCTGCAGCTCCGGTTGGCTGAGAGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 90 bp | TACACGCCGCTCACCGCAGCCGCTACGTCGTGGTCCAGGCGCGTCTaGCTCTCAGCCAACCGGAGCTGCAGCAGCGAGCGCGCAGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: YTPLTAAATSWSRRV*LSANRSCSSERAGA Trigger: GGCGCCTGCGCGCTCGCTGCTGCAGCTCCGGTTGGCTGAGAGCCAGACGCGCCTGGACCACGACGTAGCGGCTGCGGTGAGCGGCGTGTA 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 90 bp | CGACCCGCACGGCGGTACACGCCGCTCACCGCAGCCGCTACGTCGTaGTCCAGGCGCGTCTGGCTCTCAGCCAACCGGAGCTGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RPARRYTPLTAAATS*SRRVWLSANRSCSS Trigger: GCTGCTGCAGCTCCGGTTGGCTGAGAGCCAGACGCGCCTGGACCACGACGTAGCGGCTGCGGTGAGCGGCGTGTACCGCCGTGCGGGTCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS GCA 90 bp | GCTACGTCGTGGTCCAGGCGCGTCTGGCTCTCAGCCAACCGGAGCTaGAGCAGCGAGCGCGCAGGCGCCATGGCAGGGGTCTCCTCCGTG | + |
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Preference number: 5 (lower is better) Translates to: ATSWSRRVWLSANRS*SSERAGAMAGVSSV Trigger: CACGGAGGAGACCCCTGCCATGGCGCCTGCGCGCTCGCTGCTGCAGCTCCGGTTGGCTGAGAGCCAGACGCGCCTGGACCACGACGTAGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 72 bp | GCACCACGAGCGGGGGCAGGTCGACCGGCACAACCGTaGGCTCGGGCTCAGGCTCCGAGTCGGTCTCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: APRAGAGRPAQP*ARAQAPSRSPP Trigger: CGGCGGAGACCGACTCGGAGCCTGAGCCCGAGCCCACGGTTGTGCCGGTCGACCTGCCCCCGCTCGTGGTGC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS GCA 72 bp | GCGAGCGCGCAGGCGCCATGGCAGGGGTCTCCTCCGTaGCCCAAGTCTCCGCCGGATCGCGCTGCACCACGA | + |
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Preference number: 6 (lower is better) Translates to: ASAQAPWQGSPP*PKSPPDRAAPR Trigger: TCGTGGTGCAGCGCGATCCGGCGGAGACTTGGGGCACGGAGGAGACCCCTGCCATGGCGCCTGCGCGCTCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 72 bp | CCAACCGGAGCTGCAGCAGCGAGCGCGCAGGCGCCATaGCAGGGGTCTCCTCCGTGCCCCAAGTCTCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: PTGAAAASAQAP*QGSPPCPKSPP Trigger: CGGCGGAGACTTGGGGCACGGAGGAGACCCCTGCCATGGCGCCTGCGCGCTCGCTGCTGCAGCTCCGGTTGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS GCA 72 bp | GTCTCCTCCGTGCCCCAAGTCTCCGCCGGATCGCGCTaGACCACGAGCGGGGGCAGGTCGACCGGCACAACC | + |
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Preference number: 6 (lower is better) Translates to: VSSVPQVSAGSR*TTSGGRSTGTT Trigger: GGTTGTGCCGGTCGACCTGCCCCCGCTCGTGGTGCAGCGCGATCCGGCGGAGACTTGGGGCACGGAGGAGAC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 72 bp | CGGCGGTACACGCCGCTCACCGCAGCCGCTACGTCGTaGTCCAGGCGCGTCTGGCTCTCAGCCAACCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RRYTPLTAAATS*SRRVWLSANRS Trigger: GCTCCGGTTGGCTGAGAGCCAGACGCGCCTGGACCACGACGTAGCGGCTGCGGTGAGCGGCGTGTACCGCCG 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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| CDS CCA 72 bp | CTCACCGCAGCCGCTACGTCGTGGTCCAGGCGCGTCTaGCTCTCAGCCAACCGGAGCTGCAGCAGCGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: LTAAATSWSRRV*LSANRSCSSER Trigger: GCGCTCGCTGCTGCAGCTCCGGTTGGCTGAGAGCCAGACGCGCCTGGACCACGACGTAGCGGCTGCGGTGAG 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077408.8 |
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