Pregenerated sensors for BLCAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067787Ensembl transcript IDs: ENSMUST00000088494.3, ENSMUST00000109528.9
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCCTGGTGGGAGGATGATGGCGACTGCTCCCCTGGGTCTTGTCTaGACCACCTTGGAGTCCACTGTGCTGGTCGCTCTGCAATCCCCA | + |
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Preference number: 1 (lower is better) Translates to: APGGRMMATAPLGLV*TTLESTVLVALQSP Trigger: TGGGGATTGCAGAGCGACCAGCACAGTGGACTCCAAGGTGGTTCAGACAAGACCCAGGGGAGCAGTCGCCATCATCCTCCCACCAGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR TCA 90 bp | GTACAGTCTACGTGCGCAGCAATGAGGAAGCTCCTGGTGGGAGGATaGTGGCGACTGCTCCCCTGGGTCTTGTCTGAACCACCTTGGAGT | + |
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Preference number: 1 (lower is better) Translates to: VQSTCAAMRKLLVGG*WRLLPWVLSEPPWS Trigger: ACTCCAAGGTGGTTCAGACAAGACCCAGGGGAGCAGTCGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR TCA 90 bp | GAGAATACTGCACATCTCCCTCCTGAAGAGCATGCACTGGAGACATaGGGTGGCCCCTTTAGGTCAGCTGAGAGAGACAGGAGGAAGAGC | + |
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Preference number: 1 (lower is better) Translates to: ENTAHLPPEEHALET*GGPFRSAERDRRKS Trigger: GCTCTTCCTCCTGTCTCTCTCAGCTGACCTAAAGGGGCCACCTCATGTCTCCAGTGCATGCTCTTCAGGAGGGAGATGTGCAGTATTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR TCA 90 bp | TCTTCCTGTGTTTTCTTCATAGTGTACAGTCTACGTGCGCAGCAATaGGGAAGCTCCTGGTGGGAGGATGATGGCGACTGCTCCCCTGGG | + |
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Preference number: 1 (lower is better) Translates to: SSCVFFIVYSLRAQQ*GSSWWEDDGDCSPG Trigger: CCCAGGGGAGCAGTCGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTACACTATGAAGAAAACACAGGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CCA 90 bp | GGGTCTACGAGAATACTGCACATCTCCCTCCTGAAGAGCATGCACTaGAGACATGAGGTGGCCCCTTTAGGTCAGCTGAGAGAGACAGGA | + |
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Preference number: 1 (lower is better) Translates to: GSTRILHISLLKSMH*RHEVAPLGQLRETG Trigger: TCCTGTCTCTCTCAGCTGACCTAAAGGGGCCACCTCATGTCTCCAGTGCATGCTCTTCAGGAGGGAGATGTGCAGTATTCTCGTAGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR GCA 90 bp | AGGACTGCGGGATTTGAAACTCCAATGCTTTATGACCTATGTCAATaGCTCCCCTCCCGTCTTCTGCTTCCTTGGCAAGCTATCTCGGCA | + |
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Preference number: 1 (lower is better) Translates to: RTAGFETPMLYDLCQ*LPSRLLLPWQAISA Trigger: TGCCGAGATAGCTTGCCAAGGAAGCAGAAGACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR GCA 90 bp | ATTAGGAATGTGGTACCCGCAGGACTGCGGGATTTGAAACTCCAATaGTTTATGACCTATGTCAATGCCTCCCCTCCCGTCTTCTGCTTC | + |
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Preference number: 1 (lower is better) Translates to: IRNVVPAGLRDLKLQ*FMTYVNASPPVFCF Trigger: GAAGCAGAAGACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGTCCTGCGGGTACCACATTCCTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGAACAACCATGCTGATCCCCAGTGGGTAGGGGCCAGGAGAAAGTCTCATGGAGAGAGGCTGGGCTaGAAGGCAGGAGCCCAGATA | + |
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Preference number: 2 (lower is better) Translates to: WKNNHADPQWVGARRKSHGERLG*KAGAQI Trigger: TATCTGGGCTCCTGCCTTCCAGCCCAGCCTCTCTCC...ATGAGACTTTCTCCTGGCCCCTACCCACTGGGGATCAGCATGGTTGTTCTTCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR TCA 90 bp | TGTACAGTCTACGTGCGCAGCAATGAGGAAGCTCCTGGTGGGAGGATGATGGCGAAAGGGAACGAAGGATaGAAAAGCGAGGCTCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: CTVYVRSNEEAPGGRMMAKGNEG*KSEALG Trigger: CCCGAGAGCCTCGCTTTTTCATCCTTCGTTCCCTTT...CGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | TGTACAGTCTACGTGCGCAGCAATGAGGAAGCTCCTGGTGGGAGGATGATGGCGCGTCTTCTGCTTCCTTaGCAAGCTATCTCGGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: CTVYVRSNEEAPGGRMMARLLLP*QAISAD Trigger: GTCTGCCGAGATAGCTTGCCAAGGAAGCAGAAGACG...CGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGAACAACCATGCTGATCCCCAGTGGGTAGGGGCCAGGAGAAAGTCTCATTGGCGACTGCTCCCCTaGGTCTTGTCTGAACCACCT | + |
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Preference number: 2 (lower is better) Translates to: WKNNHADPQWVGARRKSHWRLLP*VLSEPP Trigger: AGGTGGTTCAGACAAGACCCAGGGGAGCAGTCGCCA...ATGAGACTTTCTCCTGGCCCCTACCCACTGGGGATCAGCATGGTTGTTCTTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR GCA 90 bp | TGGGCCAATCCGTCAGCCGGGACCCAGATGGTGACAGAACACACAACCATAAGATCCCCTCCCGTCTTCTaGTTCCTTGGCAAGCTATCT | + |
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Preference number: 2 (lower is better) Translates to: WANPSAGTQMVTEHTTIRSPPVF*FLGKLS Trigger: AGATAGCTTGCCAAGGAAGCAGAAGACGGGAGGGGA...TCTTATGGTTGTGTGTTCTGTCACCATCTGGGTCCCGGCTGACGGATTGGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR GCA 90 bp | TGTACAGTCTACGTGCGCAGCAATGAGGAAGCTCCTGGTGGGAGGATGATGGCGTATGACCTATGTCAATaGCTCCCCTCCCGTCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: CTVYVRSNEEAPGGRMMAYDLCQ*LPSRLL Trigger: CAGAAGACGGGAGGGGAGGCATTGACATAGGTCATA...CGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGAACAACCATGCTGATCCCCAGTGGGTAGGGGCCAGGAGAAAGTCTCATTGGAGTCCACTGTGCTaGTCGCTCTGCAATCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: WKNNHADPQWVGARRKSHWSPLC*SLCNPH Trigger: ATGGGGATTGCAGAGCGACCAGCACAGTGGACTCCA...ATGAGACTTTCTCCTGGCCCCTACCCACTGGGGATCAGCATGGTTGTTCTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR TCA 90 bp | GGAGTCCACTGTGCTGGTCGCTCTGCAATCCCCATGCTAAATAAAAACTGCAGCAAAGGGAACGAAGGATaGAAAAGCGAGGCTCTCGGG | + |
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Preference number: 2 (lower is better) Translates to: GVHCAGRSAIPMLNKNCSKGNEG*KSEALG Trigger: CCCGAGAGCCTCGCTTTTTCATCCTTCGTTCCCTTT...GCTGCAGTTTTTATTTAGCATGGGGATTGCAGAGCGACCAGCACAGTGGACTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CAA 90 bp | CCAAAAGGCTCCATTAGGAATGTGGTACCCGCAGGACTGCGGGATTaGAAACTCCAATGCTTTATGACCTATGTCAATGCCTCCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: PKGSIRNVVPAGLRD*KLQCFMTYVNASPP Trigger: GGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGTCCTGCGGGTACCACATTCCTAATGGAGCCTTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | TGGAAGAACAACCATGCTGATCCCCAGTGGGTAGGGGCCAGGAGAAAGTCTCATAAACAAGCCCTGTCTTaGACAGGTGCTCCCCAAAAA | + |
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Preference number: 2 (lower is better) Translates to: WKNNHADPQWVGARRKSHKQALS*TGAPQK Trigger: TTTTTGGGGAGCACCTGTCCAAGACAGGGCTTGTTT...ATGAGACTTTCTCCTGGCCCCTACCCACTGGGGATCAGCATGGTTGTTCTTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR TCA 90 bp | GGAGTCCACTGTGCTGGTCGCTCTGCAATCCCCATGCTAAATAAAAACTGCAGCAACTCCAATGCTTTATaGCCTATGTCAATGCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: GVHCAGRSAIPMLNKNCSNSNAL*PMSMPP Trigger: GGGAGGCATTGACATAGGTCATAAAGCATTGGAGTT...GCTGCAGTTTTTATTTAGCATGGGGATTGCAGAGCGACCAGCACAGTGGACTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | CCAAACACCTACCAAGGGAATCATGGCTGCTATGAAAAATGTAATACTTTCTCACAAAGGGAGAGAGGCTaGGCTGGAAGGCAGGAGCCC | + |
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Preference number: 2 (lower is better) Translates to: PNTYQGNHGCYEKCNTFSQRERG*AGRQEP Trigger: GGGCTCCTGCCTTCCAGCCCAGCCTCTCTCCCTTTG...TGAGAAAGTATTACATTTTTCATAGCAGCCATGATTCCCTTGGTAGGTGTTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR TCA 90 bp | AACCATAAGACCACCCACGACTACAGGACTCTACAACAGAAGCACCGATCAGTGAACTCCAATGCTTTATaGCCTATGTCAATGCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: NHKTTHDYRTLQQKHRSVNSNAL*PMSMPP Trigger: GGGAGGCATTGACATAGGTCATAAAGCATTGGAGTT...CACTGATCGGTGCTTCTGTTGTAGAGTCCTGTAGTCGTGGGTGGTCTTATGGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR GCA 90 bp | TGTACAGTCTACGTGCGCAGCAATGAGGAAGCTCCTGGTGGGAGGATGATGGCGCAAGGGAATCATGGCTaGTATGAAAAATGTAATACT | + |
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Preference number: 2 (lower is better) Translates to: CTVYVRSNEEAPGGRMMAQGNHG*YEKCNT Trigger: AGTATTACATTTTTCATAGCAGCCATGATTCCCTTG...CGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR TCA 90 bp | CCAAACACCTACCAAGGGAATCATGGCTGCTATGAAAAATGTAATACTTTCTCATGCACATCTCCCTCCTaGAGAGCATGCACTGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: PNTYQGNHGCYEKCNTFSCTSPS*RACTGD Trigger: GTCTCCAGTGCATGCTCTTCAGGAGGGAGATGTGCA...TGAGAAAGTATTACATTTTTCATAGCAGCCATGATTCCCTTGGTAGGTGTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR GCA 90 bp | ATACATACAGGGCACATCAAAAATATCCAAACACCTACCAAGGGAATCATGGCTTCCCCTCCCGTCTTCTaGTTCCTTGGCAAGCTATCT | + |
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Preference number: 2 (lower is better) Translates to: IHTGHIKNIQTPTKGIMASPPVF*FLGKLS Trigger: AGATAGCTTGCCAAGGAAGCAGAAGACGGGAGGGGA...AGCCATGATTCCCTTGGTAGGTGTTTGGATATTTTTGATGTGCCCTGTATGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CCA 90 bp | ATACATACAGGGCACATCAAAAATATCCAAACACCTACCAAGGGAATCATGGCTTCAGCCAGGGACCACTaGGTCTACGAGAATACTGCA | + |
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Preference number: 2 (lower is better) Translates to: IHTGHIKNIQTPTKGIMASARDH*VYENTA Trigger: TGCAGTATTCTCGTAGACCCAGTGGTCCCTGGCTGA...AGCCATGATTCCCTTGGTAGGTGTTTGGATATTTTTGATGTGCCCTGTATGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR GCA 90 bp | CCCAGATACCCAGGCCAAAGAGCAATGTCTCCCCATCGCTTCTTTCTTAAAAATAGAAGCACCGATCAGTaGCATTATTCACATTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: PRYPGQRAMSPHRFFLKNRSTDQ*HYSHCK Trigger: CTTACAATGTGAATAATGGCACTGATCGGTGCTTCT...ATTTTTAAGAAAGAAGCGATGGGGAGACATTGCTCTTTGGCCTGGGTATCTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR GCA 90 bp | GCGAGGCTCTCGGGCATCAGCAATCTCTTCAAATTTGAGATAAGTGCAAAAACAAGAAGCACCGATCAGTaGCATTATTCACATTGTAAG | + |
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Preference number: 2 (lower is better) Translates to: ARLSGISNLFKFEISAKTRSTDQ*HYSHCK Trigger: CTTACAATGTGAATAATGGCACTGATCGGTGCTTCT...TGTTTTTGCACTTATCTCAAATTTGAAGAGATTGCTGATGCCCGAGAGCCTCGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR TCA 72 bp | GGGAGGATGATGGCGACTGCTCCCCTGGGTCTTGTCTaGACCACCTTGGAGTCCACTGTGCTGGTCGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: GRMMATAPLGLV*TTLESTVLVAL Trigger: CAGAGCGACCAGCACAGTGGACTCCAAGGTGGTTCAGACAAGACCCAGGGGAGCAGTCGCCATCATCCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR TCA 72 bp | ACGTGCGCAGCAATGAGGAAGCTCCTGGTGGGAGGATaGTGGCGACTGCTCCCCTGGGTCTTGTCTGAACCA | + |
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Preference number: 3 (lower is better) Translates to: TCAAMRKLLVGG*WRLLPWVLSEP Trigger: TGGTTCAGACAAGACCCAGGGGAGCAGTCGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CCA 72 bp | TGGCGACTGCTCCCCTGGGTCTTGTCTGAACCACCTTaGAGTCCACTGTGCTGGTCGCTCTGCAATCCCCAT | + |
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Preference number: 3 (lower is better) Translates to: WRLLPWVLSEPP*SPLCWSLCNPH Trigger: ATGGGGATTGCAGAGCGACCAGCACAGTGGACTCCAAGGTGGTTCAGACAAGACCCAGGGGAGCAGTCGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CAA 90 bp | GGAAGCTCCTGGTGGGAGGATGATGGCGACTGCTCCCCTGGGTCTTGTCTGAACGCAGGACTGCGGGATTaGAAACTCCAATGCTTTATG | + |
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Preference number: 3 (lower is better) Translates to: GSSWWEDDGDCSPGSCLNAGLRD*KLQCFM Trigger: CATAAAGCATTGGAGTTTCAAATCCCGCAGTCCTGC...GTTCAGACAAGACCCAGGGGAGCAGTCGCCATCATCCTCCCACCAGGAGCTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CAA 90 bp | TGGAAGAACAACCATGCTGATCCCCAGTGGGTAGGGGCCAGGAGAAAGTCTCATCCGTCTTCTGCTTCCTaGGCAAGCTATCTCGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: WKNNHADPQWVGARRKSHPSSAS*ASYLGR Trigger: TCTGCCGAGATAGCTTGCCAAGGAAGCAGAAGACGG...ATGAGACTTTCTCCTGGCCCCTACCCACTGGGGATCAGCATGGTTGTTCTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR GCA 72 bp | GTGGTACCCGCAGGACTGCGGGATTTGAAACTCCAATaGTTTATGACCTATGTCAATGCCTCCCCTCCCGTC | + |
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Preference number: 3 (lower is better) Translates to: VVPAGLRDLKLQ*FMTYVNASPPV Trigger: GACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGTCCTGCGGGTACCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR TCA 72 bp | GTTTTCTTCATAGTGTACAGTCTACGTGCGCAGCAATaGGGAAGCTCCTGGTGGGAGGATGATGGCGACTGC | + |
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Preference number: 3 (lower is better) Translates to: VFFIVYSLRAQQ*GSSWWEDDGDC Trigger: GCAGTCGCCATCATCCTCCCACCAGGAGCTTCCTCATTGCTGCGCACGTAGACTGTACACTATGAAGAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CCA 72 bp | AGAATACTGCACATCTCCCTCCTGAAGAGCATGCACTaGAGACATGAGGTGGCCCCTTTAGGTCAGCTGAGA | + |
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Preference number: 3 (lower is better) Translates to: RILHISLLKSMH*RHEVAPLGQLR Trigger: TCTCAGCTGACCTAAAGGGGCCACCTCATGTCTCCAGTGCATGCTCTTCAGGAGGGAGATGTGCAGTATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CAA 90 bp | AACCATAAGACCACCCACGACTACAGGACTCTACAACAGAAGCACCGATCAGTGCCGTCTTCTGCTTCCTaGGCAAGCTATCTCGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: NHKTTHDYRTLQQKHRSVPSSAS*ASYLGR Trigger: TCTGCCGAGATAGCTTGCCAAGGAAGCAGAAGACGG...CACTGATCGGTGCTTCTGTTGTAGAGTCCTGTAGTCGTGGGTGGTCTTATGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CAA 90 bp | GGAGTCCACTGTGCTGGTCGCTCTGCAATCCCCATGCTAAATAAAAACTGCAGCAAAACAAGCCCTGTCTaGGACAGGTGCTCCCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: GVHCAGRSAIPMLNKNCSKTSPV*DRCSPK Trigger: TTTTGGGGAGCACCTGTCCAAGACAGGGCTTGTTTT...GCTGCAGTTTTTATTTAGCATGGGGATTGCAGAGCGACCAGCACAGTGGACTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR-3UTR CAA 90 bp | GGAGTCCACTGTGCTGGTCGCTCTGCAATCCCCATGCTAAATAAAAACTGCAGCGCAGGACTGCGGGATTaGAAACTCCAATGCTTTATG | + |
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Preference number: 3 (lower is better) Translates to: GVHCAGRSAIPMLNKNCSAGLRD*KLQCFM Trigger: CATAAAGCATTGGAGTTTCAAATCCCGCAGTCCTGC...GCTGCAGTTTTTATTTAGCATGGGGATTGCAGAGCGACCAGCACAGTGGACTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CCA 72 bp | ATTTCCGACTGGAAGAACAACCATGCTGATCCCCAGTaGGTAGGGGCCAGGAGAAAGTCTCATTTGCAAACA | + |
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Preference number: 3 (lower is better) Translates to: ISDWKNNHADPQ*VGARRKSHLQT Trigger: TGTTTGCAAATGAGACTTTCTCCTGGCCCCTACCCACTGGGGATCAGCATGGTTGTTCTTCCAGTCGGAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR GCA 72 bp | GGATTTGAAACTCCAATGCTTTATGACCTATGTCAATaGCTCCCCTCCCGTCTTCTGCTTCCTTGGCAAGCT | + |
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Preference number: 3 (lower is better) Translates to: GFETPMLYDLCQ*LPSRLLLPWQA Trigger: AGCTTGCCAAGGAAGCAGAAGACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR TCA 90 bp | TGGTGGGAGGATGATGGCGACTGCTCCCCTGGGTCTTGTCTGAACCACCTTGGAAGCAGCTATAGCAGATaGGAAAGAGGGCTGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: WWEDDGDCSPGSCLNHLGSSYSR*ERGLPG Trigger: TCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCT...TCCAAGGTGGTTCAGACAAGACCCAGGGGAGCAGTCGCCATCATCCTCCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR CCA 90 bp | GCGGGATTTGAAACTCCAATGCTTTATGACCTATGTCAATGCCTCCCCTCCCGTCCCATGAACATGGAGTaGCTGAACCACAGAGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: AGFETPMLYDLCQCLPSRPMNME*LNHRAG Trigger: CCCCGCTCTGTGGTTCAGCCACTCCATGTTCATGGG...ACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR CCA 90 bp | CCCAGATACCCAGGCCAAAGAGCAATGTCTCCCCATCGCTTCTTTCTTAAAAATCCCATGAACATGGAGTaGCTGAACCACAGAGCGGGG | + |
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Preference number: 4 (lower is better) Translates to: PRYPGQRAMSPHRFFLKNPMNME*LNHRAG Trigger: CCCCGCTCTGTGGTTCAGCCACTCCATGTTCATGGG...ATTTTTAAGAAAGAAGCGATGGGGAGACATTGCTCTTTGGCCTGGGTATCTGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR GCA 90 bp | CTTTATGACCTATGTCAATGCCTCCCCTCCCGTCTTCTGCTTCCTTGGCAAGCTCCAAGGCACATATTGTaGAAGGTTTCCGTTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LYDLCQCLPSRLLLPWQAPRHIL*KVSVPG Trigger: TCCTGGAACGGAAACCTTGCACAATATGTGCCTTGG...AGCTTGCCAAGGAAGCAGAAGACGGGAGGGGAGGCATTGACATAGGTCATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CAA 72 bp | CAGAGGAAATACTGGAGGTCTGCAGACAACGAGCAGTaGAGACATGATTCCGTCTCACCTTCTCAAAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: QRKYWRSADNEQ*RHDSVSPSQKG Trigger: TCCCTTTTGAGAAGGTGAGACGGAATCATGTCTCAACTGCTCGTTGTCTGCAGACCTCCAGTATTTCCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR GCA 90 bp | GCGAGGCTCTCGGGCATCAGCAATCTCTTCAAATTTGAGATAAGTGCAAAAACAGATGAGAAAGAGGGCTaGCAGGAAAACCAAGGCACA | + |
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Preference number: 4 (lower is better) Translates to: ARLSGISNLFKFEISAKTDEKEG*QENQGT Trigger: TGTGCCTTGGTTTTCCTGGCAGCCCTCTTTCTCATC...TGTTTTTGCACTTATCTCAAATTTGAAGAGATTGCTGATGCCCGAGAGCCTCGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| 3UTR CAA 72 bp | TCCATTAGGAATGTGGTACCCGCAGGACTGCGGGATTaGAAACTCCAATGCTTTATGACCTATGTCAATGCC | + |
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Preference number: 4 (lower is better) Translates to: SIRNVVPAGLRD*KLQCFMTYVNA Trigger: GGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGTCCTGCGGGTACCACATTCCTAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR TCA 90 bp | ATACATACAGGGCACATCAAAAATATCCAAACACCTACCAAGGGAATCATGGCTAGCAGCTATAGCAGATaGGAAAGAGGGCTGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IHTGHIKNIQTPTKGIMASSYSR*ERGLPG Trigger: TCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCT...AGCCATGATTCCCTTGGTAGGTGTTTGGATATTTTTGATGTGCCCTGTATGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR CCA 90 bp | TATGAAAAATGTAATACTTTCTCATTCACTCAGCCAGGGACCACTGGGTCTACGGGGGAATCGGAGCAGTaGTACAGGAAACAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: YEKCNTFSFTQPGTTGSTGESEQ*YRKQFP Trigger: GGGAAATTGTTTCCTGTACCACTGCTCCGATTCCCC...CGTAGACCCAGTGGTCCCTGGCTGAGTGAATGAGAAAGTATTACATTTTTCATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR GCA 90 bp | ATACATACAGGGCACATCAAAAATATCCAAACACCTACCAAGGGAATCATGGCTGATGAGAAAGAGGGCTaGCAGGAAAACCAAGGCACA | + |
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Preference number: 4 (lower is better) Translates to: IHTGHIKNIQTPTKGIMADEKEG*QENQGT Trigger: TGTGCCTTGGTTTTCCTGGCAGCCCTCTTTCTCATC...AGCCATGATTCCCTTGGTAGGTGTTTGGATATTTTTGATGTGCCCTGTATGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR GCA 90 bp | ATACATACAGGGCACATCAAAAATATCCAAACACCTACCAAGGGAATCATGGCTCCAAGGCACATATTGTaGAAGGTTTCCGTTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IHTGHIKNIQTPTKGIMAPRHIL*KVSVPG Trigger: TCCTGGAACGGAAACCTTGCACAATATGTGCCTTGG...AGCCATGATTCCCTTGGTAGGTGTTTGGATATTTTTGATGTGCCCTGTATGTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR CCA 90 bp | CCAAACACCTACCAAGGGAATCATGGCTGCTATGAAAAATGTAATACTTTCTCAGGGGAATCGGAGCAGTaGTACAGGAAACAATTTCCC | + |
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Preference number: 4 (lower is better) Translates to: PNTYQGNHGCYEKCNTFSGESEQ*YRKQFP Trigger: GGGAAATTGTTTCCTGTACCACTGCTCCGATTCCCC...TGAGAAAGTATTACATTTTTCATAGCAGCCATGATTCCCTTGGTAGGTGTTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS TCA 90 bp | CGGAGCAGTGGTACAGGAAACAATTTCCCCAGCAGCTATAGCAGATaGGAAAGAGGGCTGCCAGGAAAACCAAGGCACATATTGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: RSSGTGNNFPSSYSR*ERGLPGKPRHILCK Trigger: CTTGCACAATATGTGCCTTGGTTTTCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCTGGGGAAATTGTTTCCTGTACCACTGCTCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS GCA 90 bp | CAGGAAACAATTTCCCCAGCAGCTATAGCAGATGAGAAAGAGGGCTaGCAGGAAAACCAAGGCACATATTGTGCAAGGTTTCCGTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: QETISPAAIADEKEG*QENQGTYCARFPFQ Trigger: CTGGAACGGAAACCTTGCACAATATGTGCCTTGGTTTTCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCTGGGGAAATTGTTTCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS-3UTR CAA 90 bp | GCGGGATTTGAAACTCCAATGCTTTATGACCTATGTCAATGCCTCCCCTCCCGTAAACCAAGGCACATATaGTGCAAGGTTTCCGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: AGFETPMLYDLCQCLPSRKPRHI*CKVSVP Trigger: TGGAACGGAAACCTTGCACAATATGTGCCTTGGTTT...ACGGGAGGGGAGGCATTGACATAGGTCATAAAGCATTGGAGTTTCAAATCCCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS TCA 72 bp | GGTACAGGAAACAATTTCCCCAGCAGCTATAGCAGATaGGAAAGAGGGCTGCCAGGAAAACCAAGGCACATA | + |
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Preference number: 6 (lower is better) Translates to: GTGNNFPSSYSR*ERGLPGKPRHI Trigger: TATGTGCCTTGGTTTTCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCTGGGGAAATTGTTTCCTGTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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| CDS GCA 72 bp | ATTTCCCCAGCAGCTATAGCAGATGAGAAAGAGGGCTaGCAGGAAAACCAAGGCACATATTGTGCAAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: ISPAAIADEKEG*QENQGTYCARF Trigger: AAACCTTGCACAATATGTGCCTTGGTTTTCCTGGCAGCCCTCTTTCTCATCTGCTATAGCTGCTGGGGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088494.3 ENSMUST00000109528.9 |
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