RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BICDL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041609

Ensembl transcript IDs: ENSMUST00000055408.13, ENSMUST00000118576.8, ENSMUST00000121746.8, ENSMUST00000141950.2, ENSMUST00000141976.2, ENSMUST00000148276.3

Found 221 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCACAGGCTGGGCCTCCTGCTGTGCAGGGCTCCAGCAGAGGTGCATaGACACGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTGGTGG +
Preference number: 1 (lower is better)
Translates to: PQAGPPAVQGSSRGA*TRVRGRASPIPGWW
Trigger: CCACCAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCGTGTGCATGCACCTCTGCTGGAGCCCTGCACAGCAGGAGGCCCAGCCTGTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 90 bp ATAGCCACAGGCTGGGCCTCCTGCTGTGCAGGGCTCCAGCAGAGGTaGATGCACACGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTG +
Preference number: 1 (lower is better)
Translates to: IATGWASCCAGLQQR*MHTGEGPCLPYSRL
Trigger: CAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCGTGTGCATGCACCTCTGCTGGAGCCCTGCACAGCAGGAGGCCCAGCCTGTGGCTAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 90 bp GCATGCACACGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTGGTaGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCATGCACA +
Preference number: 1 (lower is better)
Translates to: ACTRVRGRASPIPGW*LRLEWRLRPPEACT
Trigger: TGTGCATGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCGTGTGCATGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 90 bp GTGGCTGAGCCCTGCTCACTAACAGGATCCTGGGAAAGCCCAGGCTaGGGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCCCTT +
Preference number: 1 (lower is better)
Translates to: VAEPCSLTGSWESPG*GLAWAVGTGLFLSL
Trigger: AAGGGACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCCCAGGATCCTGTTAGTGAGCAGGGCTCAGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 90 bp AGCAGAGCCTTTAGGGTGGACTGTGGTCAGCTGGGTCTGAGTGGCTaGGCCCTGCTCACTAACAGGATCCTGGGAAAGCCCAGGCTGAGG +
Preference number: 1 (lower is better)
Translates to: SRAFRVDCGQLGLSG*ALLTNRILGKPRLR
Trigger: CCTCAGCCTGGGCTTTCCCAGGATCCTGTTAGTGAGCAGGGCTCAGCCACTCAGACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 90 bp CACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGCTaGTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCAT +
Preference number: 1 (lower is better)
Translates to: HAAFSVRVGEPGPSG*SCGLNLLGLAKKLH
Trigger: ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 90 bp GCAGCAGCAGGCCGGCTCTGTTCCTTCAGGTGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGCATGTCATCCTCAAAGGCAGGAGGG +
Preference number: 1 (lower is better)
Translates to: AAAGRLCSFRCVSIS*LSMTLCMSSSKAGG
Trigger: CCCTCCTGCCTTTGAGGATGACATGCACAGGGTCATTGACAGGCAGCTGATGGACACGCACCTGAAGGAACAGAGCCGGCCTGCTGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR CCA 90 bp GGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTaGTTCTTAGGCCTCATAGCCACAGGCTGGGCCTCCTGCTGTGCA +
Preference number: 1 (lower is better)
Translates to: GLPWGTGWPQQSLYT*FLGLIATGWASCCA
Trigger: TGCACAGCAGGAGGCCCAGCCTGTGGCTATGAGGCCTAAGAACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 90 bp CAGGCTTCCCTAGGGATAAGGACTGCACTGGAGGAAGCTGAGGAGTaGTGGCAGCCAGAAGATGGCCTTCCCTGGGGTACAGGATGGCCT +
Preference number: 1 (lower is better)
Translates to: QASLGIRTALEEAEE*WQPEDGLPWGTGWP
Trigger: AGGCCATCCTGTACCCCAGGGAAGGCCATCTTCTGGCTGCCACCACTCCTCAGCTTCCTCCAGTGCAGTCCTTATCCCTAGGGAAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 90 bp AAGGAGGCAGCAGAGCCTTTAGGGTGGACTGTGGTCAGCTGGGTCTaGGTGGCTGAGCCCTGCTCACTAACAGGATCCTGGGAAAGCCCA +
Preference number: 1 (lower is better)
Translates to: KEAAEPLGWTVVSWV*VAEPCSLTGSWESP
Trigger: TGGGCTTTCCCAGGATCCTGTTAGTGAGCAGGGCTCAGCCACTCAGACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGCTGCCTCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 90 bp GCTTCCCTAGGGATAAGGACTGCACTGGAGGAAGCTGAGGAGTGGTaGCAGCCAGAAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAA +
Preference number: 1 (lower is better)
Translates to: ASLGIRTALEEAEEW*QPEDGLPWGTGWPQ
Trigger: TTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTCTGGCTGCCACCACTCCTCAGCTTCCTCCAGTGCAGTCCTTATCCCTAGGGAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 90 bp CTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGCTGCTCTTGTaGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATCTGAGGTG +
Preference number: 1 (lower is better)
Translates to: LQCEGGRTRPLRLLL*PQLARVGQEVASEV
Trigger: CACCTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 90 bp TATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTaGGGCATGCACAGGAGGCCCCAATCTCTTCCCCATGTTCAAATT +
Preference number: 1 (lower is better)
Translates to: YSRLVAEARVEAQAS*GMHRRPQSLPHVQI
Trigger: AATTTGAACATGGGGAAGAGATTGGGGCCTCCTGTGCATGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 90 bp CAACTTGCTCGGGTTGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTaGTGTGGAAGACAAGTCCTGTCCCATGACGGGGGAAGTCTGGAG +
Preference number: 1 (lower is better)
Translates to: QLARVGQEVASEVGG*CGRQVLSHDGGSLE
Trigger: CTCCAGACTTCCCCCGTCATGGGACAGGACTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 90 bp GAGGAGTGGTGGCAGCCAGAAGATGGCCTTCCCTGGGGTACAGGATaGCCTCAACAGAGCTTGTACACCTGGTTCTTAGGCCTCATAGCC +
Preference number: 1 (lower is better)
Translates to: EEWWQPEDGLPWGTG*PQQSLYTWFLGLIA
Trigger: GGCTATGAGGCCTAAGAACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTCTGGCTGCCACCACTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 90 bp CTGGAGGAAGCTGAGGAGTGGTGGCAGCCAGAAGATGGCCTTCCCTaGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTGGTTCTTA +
Preference number: 1 (lower is better)
Translates to: LEEAEEWWQPEDGLP*GTGWPQQSLYTWFL
Trigger: TAAGAACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTCTGGCTGCCACCACTCCTCAGCTTCCTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR TCA 90 bp GGCCGTGCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGTGGGAAAGCCCAGGCTaGGGCTTGGCTTGGGCAGTG +
Preference number: 2 (lower is better)
Translates to: GRASPIPGWWLRLEWRLRWESPG*GLAWAV
Trigger: CACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCCCA...CCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGTGGCTGAGGCTCGAGTaGAGGCTCAGGCCTCCTGAG +
Preference number: 2 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRWLRLE*RLRPPE
Trigger: CTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCA...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGCTCATAGCCACAGGCTaGGCCTCCTGCTGTGCAGGG +
Preference number: 2 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRLIATG*ASCCAG
Trigger: CCCTGCACAGCAGGAGGCCCAGCCTGTGGCTATGAG...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR TCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCATGGGAAAGCCCAGGCTaGGGCTTGGCTTGGGCAGTG +
Preference number: 2 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEAWESPG*GLAWAV
Trigger: CACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCCCA...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGAGCCCAGGCTGAGGCTTaGCTTGGGCAGTGGGGACAG +
Preference number: 2 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGAQAEA*LGQWGQ
Trigger: CTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGC...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGACTCATAGCCACAGGCTaGGCCTCCTGCTGTGCAGGG +
Preference number: 2 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGLIATG*ASCCAG
Trigger: CCCTGCACAGCAGGAGGCCCAGCCTGTGGCTATGAG...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR GCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGGGCTCCAGCAGAGGTaGATGCACACGGGTGAGGGG +
Preference number: 2 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSGLQQR*MHTGEG
Trigger: CCCCTCACCCGTGTGCATGCACCTCTGCTGGAGCCC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR GCA 90 bp AAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTGGTGGGCTCCAGCAGAGGTaGATGCACACGGGTGAGGGG +
Preference number: 2 (lower is better)
Translates to: KMAFPGVQDGLNRACTPGGLQQR*MHTGEG
Trigger: CCCCTCACCCGTGTGCATGCACCTCTGCTGGAGCCC...ACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR GCA 90 bp AAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTGGTCTGGGCCTCCTGCTGTaGAGGGCTCCAGCAGAGGTG +
Preference number: 2 (lower is better)
Translates to: KMAFPGVQDGLNRACTPGLGLLL*RAPAEV
Trigger: CACCTCTGCTGGAGCCCTGCACAGCAGGAGGCCCAG...ACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR GCA 90 bp CTCGGGTTGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTGCTGTGGAAGACAAGGGGCAATGGGAATGCTaGCCGGCCCAGGCTTCCCTA +
Preference number: 2 (lower is better)
Translates to: LGLAKKLHLRWEGAVEDKGQWEC*PAQASL
Trigger: TAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGCCC...CTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CAA 90 bp CCAGAAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTaGTACACCTGGTTCTTAGGCCTCATAGCCACAGGCTGGGCCTCC +
Preference number: 2 (lower is better)
Translates to: PEDGLPWGTGWPQQS*YTWFLGLIATGWAS
Trigger: GGAGGCCCAGCCTGTGGCTATGAGGCCTAAGAACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CAA 90 bp TGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGCTGCTCTaGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATCTGAG +
Preference number: 2 (lower is better)
Translates to: CLQCEGGRTRPLRLL*WPQLARVGQEVASE
Trigger: CTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR TCA 90 bp AAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTGGTTGGGAAAGCCCAGGCTaGGGCTTGGCTTGGGCAGTG +
Preference number: 2 (lower is better)
Translates to: KMAFPGVQDGLNRACTPGWESPG*GLAWAV
Trigger: CACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCCCA...ACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCTTGGCTTGGGCAGTaGGGACAGGTTTGTTCCTGT +
Preference number: 2 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTAWLGQ*GQVCSC
Trigger: ACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGC...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGAGAAGATGGCCTTCCCTaGGGTACAGGATGGCCTCAA +
Preference number: 2 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGEDGLP*GTGWPQ
Trigger: TTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTC...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CAA 90 bp TCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTaGCATCTGAGGTGGGAGGGTGCTGTGGAAGACAAGTCCTGTCCC +
Preference number: 2 (lower is better)
Translates to: SGCSCGLNLLGLAKK*HLRWEGAVEDKSCP
Trigger: GGGACAGGACTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATGCTTGGCTTGGGCAGTaGGGACAGGTTTGTTCCTGT +
Preference number: 2 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHAWLGQ*GQVCSC
Trigger: ACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGC...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGCAGAGCCTTTAGGGTaGACTGTGGTCAGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSAEPLG*TVVSWV
Trigger: GACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATCCCTGGGGTACAGGATaGCCTCAACAGAGCTTGTAC +
Preference number: 2 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHPWGTG*PQQSLY
Trigger: GTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGG...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGGTGGGAGGGTGCTGTaGAAGACAAGTCCTGTCCCA +
Preference number: 2 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSGGRVL*KTSPVP
Trigger: TGGGACAGGACTTGTCTTCCACAGCACCCTCCCACC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR GCA 90 bp GGCCAGACTCCTCCCCACCTAAATCTTCCTGAAGAAGGAGAAGAGCCGTTTGCCTGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGC +
Preference number: 2 (lower is better)
Translates to: GQTPPHLNLPEEGEEPFACVSIS*LSMTLC
Trigger: GCACAGGGTCATTGACAGGCAGCTGATGGACACGCA...GGCAAACGGCTCTTCTCCTTCTTCAGGAAGATTTAGGTGGGGAGGAGTCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR-3UTR CCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGCTTGGCTTGGGCAGTaGGGACAGGTTTGTTCCTGT +
Preference number: 2 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSAWLGQ*GQVCSC
Trigger: ACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGAAGATGGCCTTCCCTaGGGTACAGGATGGCCTCAA +
Preference number: 2 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSEDGLP*GTGWPQ
Trigger: TTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR GCA 90 bp AATCTTCCTGAAGAAGGAGAAGAGCCGTTTGCCATCTGCGGTGCTGGGTTCCTGCTCTGTTCCTTCAGGTaGGTGTCCATCAGCTGCCTG +
Preference number: 2 (lower is better)
Translates to: NLPEEGEEPFAICGAGFLLCSFR*VSISCL
Trigger: CAGGCAGCTGATGGACACGCACCTGAAGGAACAGAG...CAGGAACCCAGCACCGCAGATGGCAAACGGCTCTTCTCCTTCTTCAGGAAGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR-3UTR TCA 90 bp CTAAATCTTCCTGAAGAAGGAGAAGAGCCGTTTGCCATCTGCGGTGCTGGGTTCTCAGCTGCCTGTCAATaGCCCTGTGCATGTCATCCT +
Preference number: 2 (lower is better)
Translates to: LNLPEEGEEPFAICGAGFSAACQ*PCACHP
Trigger: AGGATGACATGCACAGGGTCATTGACAGGCAGCTGA...GAACCCAGCACCGCAGATGGCAAACGGCTCTTCTCCTTCTTCAGGAAGATTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR CCA 72 bp TCTGCGGTGCTGGGTTCCTGCCCCCGCCCTACGCCGTaGCCCCTAGGGAAGGCAGCAGCAGCAGGCCGGCTC +
Preference number: 3 (lower is better)
Translates to: SAVLGSCPRPTP*PLGKAAAAGRL
Trigger: GAGCCGGCCTGCTGCTGCTGCCTTCCCTAGGGGCCACGGCGTAGGGCGGGGGCAGGAACCCAGCACCGCAGA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR CCA 72 bp CGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTGGTaGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAG +
Preference number: 3 (lower is better)
Translates to: RVRGRASPIPGW*LRLEWRLRPPE
Trigger: CTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 72 bp GGGCCTCCTGCTGTGCAGGGCTCCAGCAGAGGTGCATaGACACGGGTGAGGGGCCGTGCCTCCCCTATTCCA +
Preference number: 3 (lower is better)
Translates to: GPPAVQGSSRGA*TRVRGRASPIP
Trigger: TGGAATAGGGGAGGCACGGCCCCTCACCCGTGTGCATGCACCTCTGCTGGAGCCCTGCACAGCAGGAGGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 72 bp ACACGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTaGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCT +
Preference number: 3 (lower is better)
Translates to: TRVRGRASPIPG*WLRLEWRLRPP
Trigger: AGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCGTGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 72 bp CCCATCCACCCTGTGGCACCCACGCTGCCTTCAGTGTaGGGGTGGGAGAACCAGGCCCCTCAGGCTGCTCTT +
Preference number: 3 (lower is better)
Translates to: PIHPVAPTLPSV*GWENQAPQAAL
Trigger: AAGAGCAGCCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAGGGTGGATGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CAA 90 bp ACGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGCAGTGGGGACAGGTTaGTTCCTGTCCCTTGGTGAG +
Preference number: 3 (lower is better)
Translates to: TGEGPCLPYSRLVAEARVAVGTG*FLSLGE
Trigger: CTCACCAAGGGACAGGAACAAACCTGTCCCCACTGC...CACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 72 bp CCTGGGAAAGCCCAGGCTGAGGCTTGGCTTGGGCAGTaGGGACAGGTTTGTTCCTGTCCCTTGGTGAGGGGC +
Preference number: 3 (lower is better)
Translates to: PGKAQAEAWLGQ*GQVCSCPLVRG
Trigger: GCCCCTCACCAAGGGACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CAA 90 bp GCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGCAGTGGGGACAGGTTaGTTCCTGTCCCTTGGTGAG +
Preference number: 3 (lower is better)
Translates to: ASPIPGWWLRLEWRLRPPAVGTG*FLSLGE
Trigger: CTCACCAAGGGACAGGAACAAACCTGTCCCCACTGC...AGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CAA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGTCTTGTGGCCTCAACTaGCTCGGGTTGGCCAAGAAG +
Preference number: 3 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRSCGLN*LGLAKK
Trigger: CTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGA...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 72 bp TTGTACACCTGGTTCTTAGGCCTCATAGCCACAGGCTaGGCCTCCTGCTGTGCAGGGCTCCAGCAGAGGTGC +
Preference number: 3 (lower is better)
Translates to: LYTWFLGLIATG*ASCCAGLQQRC
Trigger: GCACCTCTGCTGGAGCCCTGCACAGCAGGAGGCCCAGCCTGTGGCTATGAGGCCTAAGAACCAGGTGTACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 72 bp GAGGGTGGGAGAACCAGGCCCCTCAGGCTGCTCTTGTaGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCA +
Preference number: 3 (lower is better)
Translates to: EGGRTRPLRLLL*PQLARVGQEVA
Trigger: TGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGGGCCTGGTTCTCCCACCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 72 bp CCCTGCTCACTAACAGGATCCTGGGAAAGCCCAGGCTaGGGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTC +
Preference number: 3 (lower is better)
Translates to: PCSLTGSWESPG*GLAWAVGTGLF
Trigger: GAACAAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCCCAGGATCCTGTTAGTGAGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 72 bp GCAGAGCCTTTAGGGTGGACTGTGGTCAGCTGGGTCTaGGTGGCTGAGCCCTGCTCACTAACAGGATCCTGG +
Preference number: 3 (lower is better)
Translates to: AEPLGWTVVSWV*VAEPCSLTGSW
Trigger: CCAGGATCCTGTTAGTGAGCAGGGCTCAGCCACTCAGACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 72 bp GGCTTCCCTAGGGATAAGGACTGCACTGGAGGAAGCTaGGGAGTGGTGGCAGCCAGAAGATGGCCTTCCCTG +
Preference number: 3 (lower is better)
Translates to: GFPRDKDCTGGS*GVVAARRWPSL
Trigger: CAGGGAAGGCCATCTTCTGGCTGCCACCACTCCTCAGCTTCCTCCAGTGCAGTCCTTATCCCTAGGGAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 72 bp CGGGTTGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTaGTGTGGAAGACAAGTCCTGTCCCATGACGGGGGA +
Preference number: 3 (lower is better)
Translates to: RVGQEVASEVGG*CGRQVLSHDGG
Trigger: TCCCCCGTCATGGGACAGGACTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CAA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATAGGCTGAGGCTTGGCTaGGGCAGTGGGGACAGGTTT +
Preference number: 3 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHRLRLG*GSGDRF
Trigger: AAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCT...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR-3UTR CAA 90 bp AAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTGGTAGGCTGAGGCTTGGCTaGGGCAGTGGGGACAGGTTT +
Preference number: 3 (lower is better)
Translates to: KMAFPGVQDGLNRACTPGRLRLG*GSGDRF
Trigger: AAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCT...ACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 72 bp TTTAGGGTGGACTGTGGTCAGCTGGGTCTGAGTGGCTaGGCCCTGCTCACTAACAGGATCCTGGGAAAGCCC +
Preference number: 3 (lower is better)
Translates to: FRVDCGQLGLSG*ALLTNRILGKP
Trigger: GGGCTTTCCCAGGATCCTGTTAGTGAGCAGGGCTCAGCCACTCAGACCCAGCTGACCACAGTCCACCCTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CCA 72 bp CTAGGGATAAGGACTGCACTGGAGGAAGCTGAGGAGTaGTGGCAGCCAGAAGATGGCCTTCCCTGGGGTACA +
Preference number: 3 (lower is better)
Translates to: LGIRTALEEAEE*WQPEDGLPWGT
Trigger: TGTACCCCAGGGAAGGCCATCTTCTGGCTGCCACCACTCCTCAGCTTCCTCCAGTGCAGTCCTTATCCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR GCA 72 bp GGCCGGCTCTGTTCCTTCAGGTGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGCATGTCATCCTCAAAG +
Preference number: 3 (lower is better)
Translates to: GRLCSFRCVSIS*LSMTLCMSSSK
Trigger: CTTTGAGGATGACATGCACAGGGTCATTGACAGGCAGCTGATGGACACGCACCTGAAGGAACAGAGCCGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR CCA 72 bp TGGCAGCCAGAAGATGGCCTTCCCTGGGGTACAGGATaGCCTCAACAGAGCTTGTACACCTGGTTCTTAGGC +
Preference number: 3 (lower is better)
Translates to: WQPEDGLPWGTG*PQQSLYTWFLG
Trigger: GCCTAAGAACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTTCTGGCTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR TCA 72 bp TCTCAATGGCCAGACTCCTCCCCACCTAAATCTTCCTaGAGAAGGAGAAGAGCCGTTTGCCATCTGCGGTGC +
Preference number: 3 (lower is better)
Translates to: SQWPDSSPPKSS*RRRRAVCHLRC
Trigger: GCACCGCAGATGGCAAACGGCTCTTCTCCTTCTTCAGGAAGATTTAGGTGGGGAGGAGTCTGGCCATTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
3UTR GCA 72 bp GTACATATCTATAAGTACATTCTTTCCGCTCAGCCCTaGTGTGCTTTTCCCGTGGAGGGCAGGAGGCTCAGA +
Preference number: 3 (lower is better)
Translates to: VHIYKYILSAQP*CAFPVEGRRLR
Trigger: TCTGAGCCTCCTGCCCTCCACGGGAAAAGCACAGCAGGGCTGAGCGGAAAGAATGTACTTATAGATATGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGCGGCTCGGCGGGTGCTaGAGCTCGGCCGGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRRLGGC*SSAGQA
Trigger: GGCTTGGCCGGCCGAGCTTCAGCACCCGCCGAGCCG...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGCGGTGCTGGGTTCCTaGCCCCGCCCTACGCCGTGG +
Preference number: 4 (lower is better)
Translates to: ASPIPGWWLRLEWRLRPPAVLGS*PRPTPW
Trigger: CCACGGCGTAGGGCGGGGGCAGGAACCCAGCACCGC...AGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAGCGGTGCTGGGTTCCTaGCCCCGCCCTACGCCGTGG +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEAAVLGS*PRPTPW
Trigger: CCACGGCGTAGGGCGGGGGCAGGAACCCAGCACCGC...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp GGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCCCTTGGTGAGGGGCAGGCGGTGCTGGGTTCCTaGCCCCGCCCTACGCCGTGG +
Preference number: 4 (lower is better)
Translates to: GLAWAVGTGLFLSLGEGQAVLGS*PRPTPW
Trigger: CCACGGCGTAGGGCGGGGGCAGGAACCCAGCACCGC...CTGCCCCTCACCAAGGGACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp ACGGGTGAGGGGCCGTGCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGCCTCGTCCCGGTCCCTaGTGGCCTTCTGAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: TGEGPCLPYSRLVAEARVPRPGP*WPSEAA
Trigger: AGCAGCTTCAGAAGGCCATCAGGGACCGGGACGAGG...CACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCCCCTCACCCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp GCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTTGCCATCTGCGGTGCTaGGTTCCTGCCCCCGCCCTA +
Preference number: 4 (lower is better)
Translates to: ASPIPGWWLRLEWRLRPPCHLRC*VPAPAL
Trigger: TAGGGCGGGGGCAGGAACCCAGCACCGCAGATGGCA...AGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp TGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGGGGCAGTGCGCAGGCTaGCGGCAGGCACGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: WAGSVAALLQLRGNLFRLGQCAG*RQARPW
Trigger: CCAAGGACGTGCCTGCCGGCAGCCTGCGCACTGCCC...CAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTAGCAGCTCGGGATCCTaGGTAGGCGGCGGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTSSSGS*VGGGGS
Trigger: GCTGCCGCCGCCGCCTACCCAGGATCCCGAGCTGCT...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGTGCCGGCTCATGTCCTaGTTCCTCTCGAGCAGCGCC +
Preference number: 4 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRCRLMS*FLSSSA
Trigger: GGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCA...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATGACTCCGGCTCCGCCTaGGGATGCTCGCCGGGCTCG +
Preference number: 4 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHDSGSA*GCSPGS
Trigger: CGAGCCCGGCGAGCATCCTCAGGCGGAGCCGGAGTC...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp GGCCGTGCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGGACTCTCCAGCCGGATaGTATGCTGGTTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: GRASPIPGWWLRLEWRLRDSPAG*YAGWWR
Trigger: CCTCCACCAACCAGCATATCATCCGGCTGGAGAGTC...CCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAGAGCCGTTTGCCATCTaGGGTGCTGGGTTCCTGCCC +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEAEPFAI*GAGFLP
Trigger: GGGCAGGAACCCAGCACCGCAGATGGCAAACGGCTC...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR CCA 90 bp GGCCGTGCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGGATGCCCTGCTGAGTTaGTCCAGCAGCCTCTGGTTC +
Preference number: 4 (lower is better)
Translates to: GRASPIPGWWLRLEWRLRDALLS*SSSLWF
Trigger: GAACCAGAGGCTGCTGGACCAACTCAGCAGGGCATC...CCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGCACGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAGACAGCCGCACCTCCTaGAGCTCCAGCTGGCTTTGG +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEADSRTS*SSSWLW
Trigger: CCAAAGCCAGCTGGAGCTCCAGGAGGTGCGGCTGTC...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTTGCCATCTGCGGTGCTaGGTTCCTGCCCCCGCCCTA +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTCHLRC*VPAPAL
Trigger: TAGGGCGGGGGCAGGAACCCAGCACCGCAGATGGCA...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGTGCATCTGCTCGTACTaGCGGCTCATGTCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRCICSY*RLMSWF
Trigger: GAACCAGGACATGAGCCGGCAGTACGAGCAGATGCA...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp TGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGAGCTGCTCTCTCTCCTaGTCCAGCTCCTCGGCCTCC +
Preference number: 4 (lower is better)
Translates to: WAGSVAALLQLRGNLFRLSCSLS*SSSSAS
Trigger: GGAGGCCGAGGAGCTGGAGCAGGAGAGAGAGCAGCT...CAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp GGGTTCCTGCCCCCGCCCTACGCCGTGGCCCCTAGGGAAGGCAGCAGCAGCAGGATGGCATCCAGTAGCTaGCTGTTCAGAGACATCATA +
Preference number: 4 (lower is better)
Translates to: GFLPPPYAVAPREGSSSRMASSS*LFRDII
Trigger: TATGATGTCTCTGAACAGCCAGCTACTGGATGCCAT...CCTGCTGCTGCTGCCTTCCCTAGGGGCCACGGCGTAGGGCGGGGGCAGGAACCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
CDS-3UTR GCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTCAGCGGGCAGCTCCATaGAGCAGGCGCTGTCCGGCT +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSQRAAP*SRRCPA
Trigger: AGCCGGACAGCGCCTGCTGCATGGAGCTGCCCGCTG...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAAGCTCCTTGTGCATCTaGTCGTACTGCCGGCTCATG +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEASSLCI*SYCRLM
Trigger: CATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCT...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGAATCAGCACCCGGTCCTaGAGCTCCTCCACAGTCCCT +
Preference number: 4 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGISTRS*SSSTVP
Trigger: AGGGACTGTGGAGGAGCTGCAGGACCGGGTGCTGAT...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCACTCCCGTTTTCGATCTaGCAGCATCTTGATCTCGGC +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEALPFSI*QHLDLG
Trigger: GCCGAGATCAAGATGCTGTCAGATCGAAAACGGGAG...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATTCTCGAGCAGCGCCTTaGCTAGTCGGGCCGCCAACA +
Preference number: 4 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHSRAAP*LVGPPT
Trigger: TGTTGGCGGCCCGACTAGGCAAGGCGCTGCTCGAGA...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGTTGAGAGCATGGACCTaGATGGAGAGCTGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRLRAWT*MESCLS
Trigger: TGAGAGACAGCTCTCCATGCAGGTCCATGCTCTCAA...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GGAAAGCCCAGGCTGAGGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCTCGGCCTCCATGCTCTaGTCGATCTCTGACAGCAGG +
Preference number: 4 (lower is better)
Translates to: GKPRLRLGLGSGDRFVPVSASML*SISDSR
Trigger: CCTGCTGTCAGAGATCGAGCAGAGCATGGAGGCCGA...GACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp CTGTGGCACCCACGCTGCCTTCAGTGTGAGGGTGGGAGAACCAGGCCCCTCAGGTATCCATCTTGCACTTaGCGAGTTCCAGCTCCACAG +
Preference number: 4 (lower is better)
Translates to: LWHPRCLQCEGGRTRPLRYPSCT*RVPAPQ
Trigger: CTGTGGAGCTGGAACTCGCCAAGTGCAAGATGGATA...CCTGAGGGGCCTGGTTCTCCCACCCTCACACTGAAGGCAGCGTGGGTGCCACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
3UTR CAA 72 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTaGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: PSGCSCGLNLLG*AKKLHLRWEGA
Trigger: AGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CAA 72 bp GAACCAGGCCCCTCAGGCTGCTCTTGTGGCCTCAACTaGCTCGGGTTGGCCAAGAAGTTGCATCTGAGGTGG +
Preference number: 4 (lower is better)
Translates to: EPGPSGCSCGLN*LGLAKKLHLRW
Trigger: CCACCTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGGGCCTGGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
3UTR CAA 72 bp TGTGAGGGTGGGAGAACCAGGCCCCTCAGGCTGCTCTaGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTT +
Preference number: 4 (lower is better)
Translates to: CEGGRTRPLRLL*WPQLARVGQEV
Trigger: AACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGGGCCTGGTTCTCCCACCCTCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTCCTCTGGTTCTGTTCTaGCAGTTCCTGGACAGCTCG +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTPLVLF*QFLDSS
Trigger: CGAGCTGTCCAGGAACTGTCAGAACAGAACCAGAGG...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp GGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTACTTCAGATGCCCTGCTaGGTTGGTCCAGCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: GSVAALLQLRGNLFRLPLLQMPC*VGPAAS
Trigger: AGAGGCTGCTGGACCAACTCAGCAGGGCATCTGAAG...TAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp GGAAAGCCCAGGCTGAGGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCTCCTCCACAGTCCCTTaGAGCAGGTCATTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GKPRLRLGLGSGDRFVPVSSTVP*SRSFSS
Trigger: GGAGGAGAATGACCTGCTTCAAGGGACTGTGGAGGA...GACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGAATCTTGATCTCGGCCTaGAGACTCTCCAGCCGGATG +
Preference number: 4 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGILISA*RLSSRM
Trigger: CATCCGGCTGGAGAGTCTGCAGGCCGAGATCAAGAT...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTCCTTTCCTCCTTCAGTaGGGTCATCTCCACGCTCAG +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTPFLLQ*GHLHAQ
Trigger: CTGAGCGTGGAGATGACCGCACTGAAGGAGGAAAGG...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGAGCCGTTTGCCATCTaGGGTGCTGGGTTCCTGCCC +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSEPFAI*GAGFLP
Trigger: GGGCAGGAACCCAGCACCGCAGATGGCAAACGGCTC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR CCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGAAGATCCTTCTCCTTCTaGCGGATCACCGACAGCAGC +
Preference number: 4 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGRSFSF*RITDSS
Trigger: GCTGCTGTCGGTGATCCGCCAGAAGGAGAAGGATCT...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp CTCGGGTTGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTGCTGTGGAAGACAAGAACTCCTCTCCTCCGTaGGTTCCTCCACCTTGCCCT +
Preference number: 4 (lower is better)
Translates to: LGLAKKLHLRWEGAVEDKNSSPP*VPPPCP
Trigger: AGGGCAAGGTGGAGGAACTCACGGAGGAGAGGAGTT...CTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp TGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTGTCTGTGGATACGGCTaGGTCGGCACTGTCATTCCC +
Preference number: 4 (lower is better)
Translates to: CGCPAPAKGEPFQTATSPVCGYG*VGTVIP
Trigger: GGGAATGACAGTGCCGACTCAGCCGTATCCACAGAC...AGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAAGGTTCAGTTTTTGCTaGATGGCATCCAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEARFSFC*MASSSW
Trigger: CCAGCTACTGGATGCCATTCAGCAAAAACTGAACCT...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp TGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCAAGCCTCCAGCTGCTaGGAGAGGTTCAGTTTTTGC +
Preference number: 4 (lower is better)
Translates to: WAGSVAALLQLRGNLFRLQASSC*ERFSFC
Trigger: GCAAAAACTGAACCTCTCTCAGCAGCTGGAGGCTTG...CAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
ENSMUST00000141976.2
CDS-3UTR TCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTCAAGCCTCCAGCTGCTaGGAGAGGTTCAGTTTTTGC +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTQASSC*ERFSFC
Trigger: GCAAAAACTGAACCTCTCTCAGCAGCTGGAGGCTTG...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
ENSMUST00000141976.2
CDS-3UTR GCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATTCCCGAAGGTGGAGCTaGTGCCTCTCCAACTCATCC +
Preference number: 4 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHSRRWS*CLSNSS
Trigger: GGATGAGTTGGAGAGGCAGCAGCTCCACCTTCGGGA...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp AAGATGGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTTGTACACCTGGTGTGGCGCTGAGCCGATaGTCCAGCTCCCGTTTTCGA +
Preference number: 4 (lower is better)
Translates to: KMAFPGVQDGLNRACTPGVALSR*SSSRFR
Trigger: TCGAAAACGGGAGCTGGAGCATCGGCTCAGCGCCAC...ACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCCTCCCCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTACATCATATCCATCTTaGACTTGGCGAGTTCCAGCT +
Preference number: 4 (lower is better)
Translates to: ASPIPGWWLRLEWRLRPPTSYPS*TWRVPA
Trigger: AGCTGGAACTCGCCAAGTGCAAGATGGATATGATGT...AGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGGGGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTCTGTCAATGACCCTGTaGATGTCATCCTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTLSMTL*MSSCQA
Trigger: GGCTTGGCAGGATGACATGCACAGGGTCATTGACAG...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp GGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTACTCTGTTCCTTCAGGTaGGTGTCCATCAGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: GSVAALLQLRGNLFRLPLLCSFR*VSISCL
Trigger: CAGGCAGCTGATGGACACGCACCTGAAGGAACAGAG...TAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp TTCAAATTCCAAGGAGGCAGCAGAGCCTTTAGGGTGGACTGTGGTCAGCTGGGTGAGCCGTTTGCCATCTaGGGTGCTGGGTTCCTGCCC +
Preference number: 4 (lower is better)
Translates to: FKFQGGSRAFRVDCGQLGEPFAI*GAGFLP
Trigger: GGGCAGGAACCCAGCACCGCAGATGGCAAACGGCTC...ACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGCTGCCTCCTTGGAATTTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR CCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATCCATGGAGGAGTCTGTaGATACGGCTGAGTCGGCAC +
Preference number: 4 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHPWRSL*IRLSRH
Trigger: GTGCCGACTCAGCCGTATCCACAGACTCCTCCATGG...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
3UTR CAA 72 bp GGCCTTCCCTGGGGTACAGGATGGCCTCAACAGAGCTaGTACACCTGGTTCTTAGGCCTCATAGCCACAGGC +
Preference number: 4 (lower is better)
Translates to: GLPWGTGWPQQS*YTWFLGLIATG
Trigger: GCCTGTGGCTATGAGGCCTAAGAACCAGGTGTACAAGCTCTGTTGAGGCCATCCTGTACCCCAGGGAAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCATCCGTCAGCTCCTTGTaGATCTGCTCGTACTGCCGG +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSSVSSL*ICSYCR
Trigger: CCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGA...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCAATGGGAATGCTGCCCGGCCCAGGCTTCCCTAGGGATAAGGACTGCACTGGATCCAGCTGGCTTTGGTaGAGCTGTAGGTCTTTGTCA +
Preference number: 4 (lower is better)
Translates to: AMGMLPGPGFPRDKDCTGSSWLW*SCRSLS
Trigger: TGACAAAGACCTACAGCTGCACCAAAGCCAGCTGGA...TCCAGTGCAGTCCTTATCCCTAGGGAAGCCTGGGCCGGGCAGCATTCCCATTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCACCGAGGACTCGTCCATaGAGGAGTCTGTGGATACGG +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSPRTRP*RSLWIR
Trigger: CCGTATCCACAGACTCCTCCATGGACGAGTCCTCGG...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAATGGCATCCAGTAGCTaGCTGTTCAGAGACATCATA +
Preference number: 4 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEAMASSS*LFRDII
Trigger: TATGATGTCTCTGAACAGCCAGCTACTGGATGCCAT...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp CTCGGGTTGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTGCTGTGGAAGACAAGATTCCCTCGGAGGTGTaGGCAGAGATATCGAACCTG +
Preference number: 4 (lower is better)
Translates to: LGLAKKLHLRWEGAVEDKIPSEV*AEISNL
Trigger: CAGGTTCGATATCTCTGCTCACACCTCCGAGGGAAT...CTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTAGGTTCAGTTTTTGCTaGATGGCATCCAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTRFSFC*MASSSW
Trigger: CCAGCTACTGGATGCCATTCAGCAAAAACTGAACCT...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
ENSMUST00000141976.2
CDS-3UTR TCA 90 bp TGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCAAGCCTCCAGCTGCTaGGAGAGGTTCAGTTTTTGC +
Preference number: 4 (lower is better)
Translates to: CGCPAPAKGEPFQTATSPQASSC*ERFSFC
Trigger: GCAAAAACTGAACCTCTCTCAGCAGCTGGAGGCTTG...AGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
ENSMUST00000141976.2
CDS-3UTR TCA 90 bp CTCGGGTTGGCCAAGAAGTTGCATCTGAGGTGGGAGGGTGCTGTGGAAGACAAGTCAGCTGCCTGTCAATaGCCCTGTGCATGTCATCCT +
Preference number: 4 (lower is better)
Translates to: LGLAKKLHLRWEGAVEDKSAACQ*PCACHP
Trigger: AGGATGACATGCACAGGGTCATTGACAGGCAGCTGA...CTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CCCTCAGGCTGCTCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTTGCATAACTCATCCTGTAGCTaGTTCACGTCCGTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: PSGCSCGLNLLGLAKKLHNSSCS*FTSVSS
Trigger: GCTGGAGACGGACGTGAAGCAGCTACAGGATGAGTT...ATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGAGCAGCCTGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTATCTTTGTCATGGCCCTaGCTTTCTAGGATCAGCACC +
Preference number: 4 (lower is better)
Translates to: GSVAALLQLRGNLFRLPLSLSWP*LSRIST
Trigger: GGTGCTGATCCTAGAAAGGCAGGGCCATGACAAAGA...TAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTTGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGC +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSCVSIS*LSMTLC
Trigger: GCACAGGGTCATTGACAGGCAGCTGATGGACACGCA...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCATGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGC +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSCVSIS*LSMTLC
Trigger: GCACAGGGTCATTGACAGGCAGCTGATGGACACGCA...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCACTCTGTTCCTTCAGGTaGGTGTCCATCAGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSLCSFR*VSISCL
Trigger: CAGGCAGCTGATGGACACGCACCTGAAGGAACAGAG...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTCTCTGTTCCTTCAGGTaGGTGTCCATCAGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSLCSFR*VSISCL
Trigger: CAGGCAGCTGATGGACACGCACCTGAAGGAACAGAG...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR CCA 90 bp TGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTTGGTCCAGCAGCCTCTaGTTCTGTTCTGACAGTTCC +
Preference number: 4 (lower is better)
Translates to: CGCPAPAKGEPFQTATSPWSSSL*FCSDSS
Trigger: GGAACTGTCAGAACAGAACCAGAGGCTGCTGGACCA...AGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp GTGGGCAGGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTTCTTCTTTGAGAGCATaGACCTGCATGGAGAGCTGT +
Preference number: 4 (lower is better)
Translates to: VGRQCGCPAPAKGEPFQTSSLRA*TCMESC
Trigger: ACAGCTCTCCATGCAGGTCCATGCTCTCAAAGAAGA...AGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCCTGCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
3UTR CAA 72 bp TCTTGTGGCCTCAACTTGCTCGGGTTGGCCAAGAAGTaGCATCTGAGGTGGGAGGGTGCTGTGGAAGACAAG +
Preference number: 4 (lower is better)
Translates to: SCGLNLLGLAKK*HLRWEGAVEDK
Trigger: CTTGTCTTCCACAGCACCCTCCCACCTCAGATGCAACTTCTTGGCCAACCCGAGCAAGTTGAGGCCACAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTGATCTGACAGCATCTTaGTCTCGGCCTGCAGACTCT +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSDLTAS*SRPADS
Trigger: AGAGTCTGCAGGCCGAGATCAAGATGCTGTCAGATC...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCATCAGCTGCCTGTCAATaGCCCTGTGCATGTCATCCT +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSSAACQ*PCACHP
Trigger: AGGATGACATGCACAGGGTCATTGACAGGCAGCTGA...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp CCTCCTGAGGCATGCACAGGAGGCCCCAATCTCTTCCCCATGTTCAAATTCCAACGAAGGTGGAGCTGCTaGCTCTCCAACTCATCCTGT +
Preference number: 4 (lower is better)
Translates to: PPEACTGGPNLFPMFKFQRRWSC*LSNSSC
Trigger: ACAGGATGAGTTGGAGAGGCAGCAGCTCCACCTTCG...TTGGAATTTGAACATGGGGAAGAGATTGGGGCCTCCTGTGCATGCCTCAGGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR GCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTCTGTCAATGACCCTGTaGATGTCATCCTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSLSMTL*MSSCQA
Trigger: GGCTTGGCAGGATGACATGCACAGGGTCATTGACAG...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR CCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCAAGCTCCAGCTGGCTTTaGTGCAGCTGTAGGTCTTTG +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSSSSWL*CSCRSL
Trigger: CAAAGACCTACAGCTGCACCAAAGCCAGCTGGAGCT...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp CCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCCTTCTCACTGAAGCTGCTCCTTTaGCTCCTTGTCCTCAGAGGT +
Preference number: 4 (lower is better)
Translates to: PAPAKGEPFQTATSPPFSLKLLL*LLVLRG
Trigger: ACCTCTGAGGACAAGGAGCCAAAGGAGCAGCTTCAG...TGAGAAGGGAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR TCA 90 bp TTCAAATTCCAAGGAGGCAGCAGAGCCTTTAGGGTGGACTGTGGTCAGCTGGGTCAAGCCTCCAGCTGCTaGGAGAGGTTCAGTTTTTGC +
Preference number: 4 (lower is better)
Translates to: FKFQGGSRAFRVDCGQLGQASSC*ERFSFC
Trigger: GCAAAAACTGAACCTCTCTCAGCAGCTGGAGGCTTG...ACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGCTGCCTCCTTGGAATTTGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp CCTCCTGAGGCATGCACAGGAGGCCCCAATCTCTTCCCCATGTTCAAATTCCAATCAGCTGCCTGTCAATaGCCCTGTGCATGTCATCCT +
Preference number: 4 (lower is better)
Translates to: PPEACTGGPNLFPMFKFQSAACQ*PCACHP
Trigger: AGGATGACATGCACAGGGTCATTGACAGGCAGCTGA...TTGGAATTTGAACATGGGGAAGAGATTGGGGCCTCCTGTGCATGCCTCAGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp AGGCATGCACAGGAGGCCCCAATCTCTTCCCCATGTTCAAATTCCAAGGAGGCACTGTCAATGACCCTGTaGATGTCATCCTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: RHAQEAPISSPCSNSKEALSMTL*MSSCQA
Trigger: GGCTTGGCAGGATGACATGCACAGGGTCATTGACAG...TGCCTCCTTGGAATTTGAACATGGGGAAGAGATTGGGGCCTCCTGTGCATGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR GCA 90 bp TTCAAATTCCAAGGAGGCAGCAGAGCCTTTAGGGTGGACTGTGGTCAGCTGGGTTCTCTCAACTTCAGATaGCCTGCTGAGTTGGTCCAG +
Preference number: 4 (lower is better)
Translates to: FKFQGGSRAFRVDCGQLGSLNFR*PAELVQ
Trigger: CTGGACCAACTCAGCAGGGCATCTGAAGTTGAGAGA...ACCCAGCTGACCACAGTCCACCCTAAAGGCTCTGCTGCCTCCTTGGAATTTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CCA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTATGGCATCCAGTAGCTaGCTGTTCAGAGACATCATA +
Preference number: 4 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSMASSS*LFRDII
Trigger: TATGATGTCTCTGAACAGCCAGCTACTGGATGCCAT...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR TCA 90 bp CATCCTCAAAGGCAGGAGGGGTGTACAACTAAAGCTGTTGGCACAGGAACTGAGAGGTTCAGTTTTTGCTaGATGGCATCCAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: HPQRQEGCTTKAVGTGTERFSFC*MASSSW
Trigger: CCAGCTACTGGATGCCATTCAGCAAAAACTGAACCT...CTCAGTTCCTGTGCCAACAGCTTTAGTTGTACACCCCTCCTGCCTTTGAGGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141976.2
CDS TCA 90 bp GGCAGCGGCGGCCCGTGCCCCTCAACCGGAGACTCCGGCTCCGCCTaGGGATGCTCGCCGGGCTCGGACGACCGCTCCCCGGCCGCCAGC +
Preference number: 5 (lower is better)
Translates to: GSGGPCPSTGDSGSA*GCSPGSDDRSPAAS
Trigger: GCTGGCGGCCGGGGAGCGGTCGTCCGAGCCCGGCGAGCATCCTCAGGCGGAGCCGGAGTCTCCGGTTGAGGGGCACGGGCCGCCGCTGCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CAA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCACTCTCGAGCAGCGCCTaGCCTAGTCGGGCCGCCAAC +
Preference number: 5 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEALSSSA*PSRAAN
Trigger: GTTGGCGGCCCGACTAGGCAAGGCGCTGCTCGAGAG...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS TCA 90 bp GGGACGTGCTGGTCGCAGCCGAGCTCTGCAAACTCCTCTCCTCCGTaGGTTCCTCCACCTTGCCCTGCAGCTGCCGGTAGGACAGCCGCA +
Preference number: 5 (lower is better)
Translates to: GTCWSQPSSANSSPP*VPPPCPAAAGRTAA
Trigger: TGCGGCTGTCCTACCGGCAGCTGCAGGGCAAGGTGGAGGAACTCACGGAGGAGAGGAGTTTGCAGAGCTCGGCTGCGACCAGCACGTCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS CCA 90 bp TCCGTCAGCTCCTTGTGCATCTGCTCGTACTGCCGGCTCATGTCCTaGTTCCTCTCGAGCAGCGCCTTGCCTAGTCGGGCCGCCAACACC +
Preference number: 5 (lower is better)
Translates to: SVSSLCICSYCRLMS*FLSSSALPSRAANT
Trigger: GGTGTTGGCGGCCCGACTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CCA 90 bp CGGCAGGCACGTCCTTGGCCGACGAGGTCTCCGAGGACTCGTCCATaGAGGAGTCTGTGGATACGGCTGAGTCGGCACTGTCATTCCCTC +
Preference number: 5 (lower is better)
Translates to: RQARPWPTRSPRTRP*RSLWIRLSRHCHSL
Trigger: GAGGGAATGACAGTGCCGACTCAGCCGTATCCACAGACTCCTCCATGGACGAGTCCTCGGAGACCTCGTCGGCCAAGGACGTGCCTGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS TCA 90 bp TCTCTCCTGCTCCAGCTCCTCGGCCTCCATGCTCTGCTCGATCTCTaGCAGCAGGGACGTGCTGGTCGCAGCCGAGCTCTGCAAACTCCT +
Preference number: 5 (lower is better)
Translates to: SLLLQLLGLHALLDL*QQGRAGRSRALQTP
Trigger: AGGAGTTTGCAGAGCTCGGCTGCGACCAGCACGTCCCTGCTGTCAGAGATCGAGCAGAGCATGGAGGCCGAGGAGCTGGAGCAGGAGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS CCA 90 bp CCTTGGCCGACGAGGTCTCCGAGGACTCGTCCATGGAGGAGTCTGTaGATACGGCTGAGTCGGCACTGTCATTCCCTCGGAGGTGTGAGC +
Preference number: 5 (lower is better)
Translates to: PWPTRSPRTRPWRSL*IRLSRHCHSLGGVS
Trigger: GCTCACACCTCCGAGGGAATGACAGTGCCGACTCAGCCGTATCCACAGACTCCTCCATGGACGAGTCCTCGGAGACCTCGTCGGCCAAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS-3UTR CAA 90 bp CCTATTCCAGGCTGGTGGCTGAGGCTCGAGTGGAGGCTCAGGCCTCCTGAGGCAAAGGAGAAGAGCCGTTaGCCATCTGCGGTGCTGGGT +
Preference number: 5 (lower is better)
Translates to: PIPGWWLRLEWRLRPPEAKEKSR*PSAVLG
Trigger: ACCCAGCACCGCAGATGGCAAACGGCTCTTCTCCTT...TGCCTCAGGAGGCCTGAGCCTCCACTCGAGCCTCAGCCACCAGCCTGGAATAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS GCA 90 bp GCTTCCCGAAGGTGGAGCTGCTGCCTCTCCAACTCATCCTGTAGCTaGTTCACGTCCGTCTCCAGCTCAGACACCCGTCCTTCCCACTCC +
Preference number: 5 (lower is better)
Translates to: ASRRWSCCLSNSSCS*FTSVSSSDTRPSHS
Trigger: GGAGTGGGAAGGACGGGTGTCTGAGCTGGAGACGGACGTGAAGCAGCTACAGGATGAGTTGGAGAGGCAGCAGCTCCACCTTCGGGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 90 bp GCAGCAGCAGGCCGGCTCTGTTCCTTCAGGTGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGCATGTCATCCTGCCAAGCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: AAAGRLCSFRCVSIS*LSMTLCMSSCQASS
Trigger: GCTGGAGGCTTGGCAGGATGACATGCACAGGGTCATTGACAGGCAGCTGATGGACACGCACCTGAAGGAACAGAGCCGGCCTGCTGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS-3UTR CAA 90 bp GGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCCCTTGGTGAGGGGCAGAGATGCCCTGCTGAGTaGGTCCAGCAGCCTCTGGTT +
Preference number: 5 (lower is better)
Translates to: GLAWAVGTGLFLSLGEGQRCPAE*VQQPLV
Trigger: AACCAGAGGCTGCTGGACCAACTCAGCAGGGCATCT...CTGCCCCTCACCAAGGGACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS TCA 90 bp CTTTCTAGGATCAGCACCCGGTCCTGCAGCTCCTCCACAGTCCCTTaGAGCAGGTCATTCTCCTCCAAGGTGGCGCTGAGCCGATGCTCC +
Preference number: 5 (lower is better)
Translates to: LSRISTRSCSSSTVP*SRSFSSKVALSRCS
Trigger: GGAGCATCGGCTCAGCGCCACCTTGGAGGAGAATGACCTGCTTCAAGGGACTGTGGAGGAGCTGCAGGACCGGGTGCTGATCCTAGAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS TCA 90 bp CCAGCTCCACAGCGTTCTTCTTGGCAATGGCCTCGTCCCGGTCCCTaGTGGCCTTCTGAAGCTGCTCCTTTGGCTCCTTGTCCTCAGAGG +
Preference number: 5 (lower is better)
Translates to: PAPQRSSWQWPRPGP*WPSEAAPLAPCPQR
Trigger: CCTCTGAGGACAAGGAGCCAAAGGAGCAGCTTCAGAAGGCCATCAGGGACCGGGACGAGGCCATTGCCAAGAAGAACGCTGTGGAGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS-3UTR CAA 90 bp GTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCAGCCTCTTGAGATCGTaGAGGGCAGTGCGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: VAALLQLRGNLFRLPLVLSLLRS*RAVRRL
Trigger: CAGCCTGCGCACTGCCCTCAACGATCTCAAGAGGCT...GAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS GCA 90 bp AGGTGCTCTAGCTTGTCCGTCAGCTCCTTGTGCATCTGCTCGTACTaGCGGCTCATGTCCTGGTTCCTCTCGAGCAGCGCCTTGCCTAGT +
Preference number: 5 (lower is better)
Translates to: RCSSLSVSSLCICSY*RLMSWFLSSSALPS
Trigger: ACTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CCA 90 bp AATGGCCTCGTCCCGGTCCCTGATGGCCTTCTGAAGCTGCTCCTTTaGCTCCTTGTCCTCAGAGGTCACTCTGAGTCGGTCCCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: NGLVPVPDGLLKLLL*LLVLRGHSESVPFL
Trigger: GAGGAAAGGGACCGACTCAGAGTGACCTCTGAGGACAAGGAGCCAAAGGAGCAGCTTCAGAAGGCCATCAGGGACCGGGACGAGGCCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS-3UTR CAA 90 bp GGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCCCTTGGTGAGGGGCAGTGCAGCTGTAGGTCTTaGTCATGGCCCTGCCTTTCT +
Preference number: 5 (lower is better)
Translates to: GLAWAVGTGLFLSLGEGQCSCRS*SWPCLS
Trigger: AGAAAGGCAGGGCCATGACAAAGACCTACAGCTGCA...CTGCCCCTCACCAAGGGACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CAA 90 bp GTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCAAGGAGAAGAGCCGTTaGCCATCTGCGGTGCTGGGT +
Preference number: 5 (lower is better)
Translates to: VAALLQLRGNLFRLPLVLKEKSR*PSAVLG
Trigger: ACCCAGCACCGCAGATGGCAAACGGCTCTTCTCCTT...GAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS TCA 90 bp CTCCAAGGTGGCGCTGAGCCGATGCTCCAGCTCCCGTTTTCGATCTaGCAGCATCTTGATTTCAAGGACCTGCTCGGCCTGCAGACTCTC +
Preference number: 5 (lower is better)
Translates to: LQGGAEPMLQLPFSI*QHLDFKDLLGLQTL
Trigger: GAGAGTCTGCAGGCCGAGCAGGTCCTTGAAATCAAGATGCTGTCAGATCGAAAACGGGAGCTGGAGCATCGGCTCAGCGCCACCTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS GCA 90 bp TCTTGTTCTAGGTGCTCTAGCTTGTCCGTCAGCTCCTTGTGCATCTaGTCGTACTGCCGGCTCATGTCCTGGTTCCTCTCGAGCAGCGCC +
Preference number: 5 (lower is better)
Translates to: SCSRCSSLSVSSLCI*SYCRLMSWFLSSSA
Trigger: GGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCTAGAACAAGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS-3UTR CAA 90 bp GGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTATTGTCCGTCAGCTCCTaGTGCATCTGCTCGTACTGC +
Preference number: 5 (lower is better)
Translates to: GSVAALLQLRGNLFRLPLLSVSS*CICSYC
Trigger: GCAGTACGAGCAGATGCACAAGGAGCTGACGGACAA...TAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CAA 90 bp GGCAGTGTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTATCTGAAGCTGCTCCTTaGGCTCCTTGTCCTCAGAGG +
Preference number: 5 (lower is better)
Translates to: GSVAALLQLRGNLFRLPLSEAAP*APCPQR
Trigger: CCTCTGAGGACAAGGAGCCAAAGGAGCAGCTTCAGA...TAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCACACTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CAA 90 bp GGAAAGCCCAGGCTGAGGCTTGGCTTGGGCAGTGGGGACAGGTTTGTTCCTGTCGACATCATATCCATCTaGCACTTGGCGAGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: GKPRLRLGLGSGDRFVPVDIISI*HLASSS
Trigger: GCTGGAACTCGCCAAGTGCAAGATGGATATGATGTC...GACAGGAACAAACCTGTCCCCACTGCCCAAGCCAAGCCTCAGCCTGGGCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CAA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTCGATCTGACAGCATCTaGATCTCGGCCTGCAGACTC +
Preference number: 5 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSRSDSI*ISACRL
Trigger: GAGTCTGCAGGCCGAGATCAAGATGCTGTCAGATCG...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS-3UTR CAA 90 bp AGGCATGCACAGGAGGCCCCAATCTCTTCCCCATGTTCAAATTCCAAGGAGGCAAAGGAGAAGAGCCGTTaGCCATCTGCGGTGCTGGGT +
Preference number: 5 (lower is better)
Translates to: RHAQEAPISSPCSNSKEAKEKSR*PSAVLG
Trigger: ACCCAGCACCGCAGATGGCAAACGGCTCTTCTCCTT...TGCCTCCTTGGAATTTGAACATGGGGAAGAGATTGGGGCCTCCTGTGCATGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS GCA 90 bp TGTTTCTCTTGTTCTAGGTGCTCTAGCTTGTCCGTCAGCTCCTTGTaGATCTGCTCGTACTGCCGGCTCATGTCCTGGTTCCTCTCGAGC +
Preference number: 5 (lower is better)
Translates to: CFSCSRCSSLSVSSL*ICSYCRLMSWFLSS
Trigger: GCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCTAGAACAAGAGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 90 bp TCTCCCTCCATGAGCTCCCTCAGGGCTCTTGAGTCCTCACTGGTCTaGCTTATTTGTTCTTCTAAGGAGTCATCGTCCATCCTCCGGGTG +
Preference number: 5 (lower is better)
Translates to: SPSMSSLRALESSLV*LICSSKESSSILRV
Trigger: CACCCGGAGGATGGACGATGACTCCTTAGAAGAACAAATAAGGCAGACCAGTGAGGACTCAAGAGCCCTGAGGGAGCTCATGGAGGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148276.3
CDS-3UTR CAA 90 bp GTGGCTGCCCTGCTCCAGCTAAGGGGGAACCTTTTCAGACTGCCACTAGTCCTCCGGATGATATGCTGGTaGGTGGAGGAATTTTTCTCC +
Preference number: 5 (lower is better)
Translates to: VAALLQLRGNLFRLPLVLRMICW*VEEFFS
Trigger: GGAGAAAAATTCCTCCACCAACCAGCATATCATCCG...GAGGACTAGTGGCAGTCTGAAAAGGTTCCCCCTTAGCTGGAGCAGGGCAGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CCA 90 bp TCAAGGACCTGCTCGGCCTGCAGACTCTCCAGCCGGATGATATGCTaGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCA +
Preference number: 5 (lower is better)
Translates to: SRTCSACRLSSRMIC*LVEEFFSRKSSLRA
Trigger: TGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCAGGTCCTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS-3UTR CAA 90 bp GCAGAAGCAGCAGGCTTAGGGCTTTGTCTCTTAGAGGCCTGGTGGGCAGTATCTATATCCATCTTGCACTaGGCGAGTTCCAGCTCCACA +
Preference number: 5 (lower is better)
Translates to: AEAAGLGLCLLEAWWAVSISILH*ASSSST
Trigger: TGTGGAGCTGGAACTCGCCAAGTGCAAGATGGATAT...AGATACTGCCCACCAGGCCTCTAAGAGACAAAGCCCTAAGCCTGCTGCTTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS GCA 90 bp GTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCATGGACCTaGATGGAGAGCTGTCTCTCAACTTCAGATGCCCTGCTGAGTTGG +
Preference number: 5 (lower is better)
Translates to: VEEFFSRKSSLRAWT*MESCLSTSDALLSW
Trigger: CCAACTCAGCAGGGCATCTGAAGTTGAGAGACAGCTCTCCATGCAGGTCCATGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 90 bp GACAGCATCTTGATCTCGGCCTGCAGACTCTCCAGCCGGATGATATaGTGGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGA +
Preference number: 5 (lower is better)
Translates to: DSILISACRLSSRMI*WLVEEFFSRKSSLR
Trigger: TCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGATCAAGATGCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS GCA 90 bp ATTTCAAGGACCTGCTCGGCCTGCAGACTCTCCAGCCGGATGATATaGTGGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGA +
Preference number: 5 (lower is better)
Translates to: ISRTCSACRLSSRMI*WLVEEFFSRKSSLR
Trigger: TCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCAGGTCCTTGAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS CCA 90 bp TGGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCATaGACCTGCATGGAGAGCTGTCTCTCAACTTCAGATGCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: WLVEEFFSRKSSLRA*TCMESCLSTSDALL
Trigger: CAGCAGGGCATCTGAAGTTGAGAGACAGCTCTCCATGCAGGTCCATGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CCA 90 bp AGCATCTTGATCTCGGCCTGCAGACTCTCCAGCCGGATGATATGCTaGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCA +
Preference number: 5 (lower is better)
Translates to: SILISACRLSSRMIC*LVEEFFSRKSSLRA
Trigger: TGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGATCAAGATGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CCA 90 bp CCTGCCAAGCCTCCAGCTGCTGAGAGAGGTTCAGTTTTTGCTGAATaGCATCCAGTAGCTGGCTGTTCAGAGACATCATATCCATCTTGC +
Preference number: 5 (lower is better)
Translates to: PAKPPAAERGSVFAE*HPVAGCSETSYPSC
Trigger: GCAAGATGGATATGATGTCTCTGAACAGCCAGCTACTGGATGCCATTCAGCAAAAACTGAACCTCTCTCAGCAGCTGGAGGCTTGGCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS GCA 72 bp GGAGACGAGGGCGGCAGCAGTGGCGGGACTCCGGACTaGGTCCCCGGCCCCAGCGGGCAGCTCCATGCAGCA +
Preference number: 6 (lower is better)
Translates to: GDEGGSSGGTPD*VPGPSGQLHAA
Trigger: TGCTGCATGGAGCTGCCCGCTGGGGCCGGGGACGCAGTCCGGAGTCCCGCCACTGCTGCCGCCCTCGTCTCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS TCA 72 bp CTCCATGCAGCAGGCGCTGTCCGGCTCGGCGGGTGCTaGAGCTCGGCCGGCCAAGCCCAGGCAGAAGGCGGA +
Preference number: 6 (lower is better)
Translates to: LHAAGAVRLGGC*SSAGQAQAEGG
Trigger: TCCGCCTTCTGCCTGGGCTTGGCCGGCCGAGCTTCAGCACCCGCCGAGCCGGACAGCGCCTGCTGCATGGAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CAA 72 bp TTGAGGGCAGTGCGCAGGCTGCCGGCAGGCACGTCCTaGGCCGACGAGGTCTCCGAGGACTCGTCCATGGAG +
Preference number: 6 (lower is better)
Translates to: LRAVRRLPAGTS*ADEVSEDSSME
Trigger: CTCCATGGACGAGTCCTCGGAGACCTCGTCGGCCAAGGACGTGCCTGCCGGCAGCCTGCGCACTGCCCTCAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS TCA 72 bp CTCCAGCTCCTCGGCCTCCATGCTCTGCTCGATCTCTaGCAGCAGGGACGTGCTGGTCGCAGCCGAGCTCTG +
Preference number: 6 (lower is better)
Translates to: LQLLGLHALLDL*QQGRAGRSRAL
Trigger: CAGAGCTCGGCTGCGACCAGCACGTCCCTGCTGTCAGAGATCGAGCAGAGCATGGAGGCCGAGGAGCTGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS CAA 90 bp TTGAGATCGTTGAGGGCAGTGCGCAGGCTGCCGGCAGGCACGTCCTaGGCCGACGAGGTCTCCGAGGACTCGTCCATGGAGGAGTCTGTG +
Preference number: 6 (lower is better)
Translates to: LRSLRAVRRLPAGTS*ADEVSEDSSMEESV
Trigger: CACAGACTCCTCCATGGACGAGTCCTCGGAGACCTCGTCGGCCAAGGACGTGCCTGCCGGCAGCCTGCGCACTGCCCTCAACGATCTCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS CAA 90 bp GTCACCGTGGGCTCCACACCGTCCACGATGCTCTGTATCAGCCTCTaGAGATCGTTGAGGGCAGTGCGCAGGCTGCCGGCAGGCACGTCC +
Preference number: 6 (lower is better)
Translates to: VTVGSTPSTMLCISL*RSLRAVRRLPAGTS
Trigger: GGACGTGCCTGCCGGCAGCCTGCGCACTGCCCTCAACGATCTCAAGAGGCTGATACAGAGCATCGTGGACGGTGTGGAGCCCACGGTGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CAA 90 bp GTGCTCGTGGGCTCCACACCGTCCACGATGCTCTGTATCAGCCTCTaGAGATCGTTGAGGGCAGTGCGCAGGCTGCCGGCAGGCACGTCC +
Preference number: 6 (lower is better)
Translates to: VLVGSTPSTMLCISL*RSLRAVRRLPAGTS
Trigger: GGACGTGCCTGCCGGCAGCCTGCGCACTGCCCTCAACGATCTCAAGAGGCTGATACAGAGCATCGTGGACGGTGTGGAGCCCACGAGCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148276.3
CDS GCA 72 bp GCCGGCTCATGTCCTGGTTCCTCTCGAGCAGCGCCTTaGCTAGTCGGGCCGCCAACACCAGATCCTTCTCCT +
Preference number: 6 (lower is better)
Translates to: AGSCPGSSRAAP*LVGPPTPDPSP
Trigger: AGGAGAAGGATCTGGTGTTGGCGGCCCGACTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CAA 72 bp TGCCGGCTCATGTCCTGGTTCCTCTCGAGCAGCGCCTaGCCTAGTCGGGCCGCCAACACCAGATCCTTCTCC +
Preference number: 6 (lower is better)
Translates to: CRLMSWFLSSSA*PSRAANTRSFS
Trigger: GGAGAAGGATCTGGTGTTGGCGGCCCGACTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CAA 72 bp CCGTCCACGATGCTCTGTATCAGCCTCTTGAGATCGTaGAGGGCAGTGCGCAGGCTGCCGGCAGGCACGTCC +
Preference number: 6 (lower is better)
Translates to: PSTMLCISLLRS*RAVRRLPAGTS
Trigger: GGACGTGCCTGCCGGCAGCCTGCGCACTGCCCTCAACGATCTCAAGAGGCTGATACAGAGCATCGTGGACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS CCA 72 bp TCCTTGTGCATCTGCTCGTACTGCCGGCTCATGTCCTaGTTCCTCTCGAGCAGCGCCTTGCCTAGTCGGGCC +
Preference number: 6 (lower is better)
Translates to: SLCICSYCRLMS*FLSSSALPSRA
Trigger: GGCCCGACTAGGCAAGGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CCA 72 bp CCATGCTCTGCTCGATCTCTGACAGCAGGGACGTGCTaGTCGCAGCCGAGCTCTGCAAACTCCTCTCCTCCG +
Preference number: 6 (lower is better)
Translates to: PCSARSLTAGTC*SQPSSANSSPP
Trigger: CGGAGGAGAGGAGTTTGCAGAGCTCGGCTGCGACCAGCACGTCCCTGCTGTCAGAGATCGAGCAGAGCATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS CCA 72 bp CGTCCTTGGCCGACGAGGTCTCCGAGGACTCGTCCATaGAGGAGTCTGTGGATACGGCTGAGTCGGCACTGT +
Preference number: 6 (lower is better)
Translates to: RPWPTRSPRTRP*RSLWIRLSRHC
Trigger: ACAGTGCCGACTCAGCCGTATCCACAGACTCCTCCATGGACGAGTCCTCGGAGACCTCGTCGGCCAAGGACG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS GCA 72 bp AGCTTGTCCGTCAGCTCCTTGTGCATCTGCTCGTACTaGCGGCTCATGTCCTGGTTCCTCTCGAGCAGCGCC +
Preference number: 6 (lower is better)
Translates to: SLSVSSLCICSY*RLMSWFLSSSA
Trigger: GGCGCTGCTCGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 72 bp CCTCCATGCTCTGCTCGATCTCTGACAGCAGGGACGTaGTGGTCGCAGCCGAGCTCTGCAAACTCCTCTCCT +
Preference number: 6 (lower is better)
Translates to: PPCSARSLTAGT*WSQPSSANSSP
Trigger: AGGAGAGGAGTTTGCAGAGCTCGGCTGCGACCAGCACGTCCCTGCTGTCAGAGATCGAGCAGAGCATGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS GCA 72 bp AGGTGGAGCTGCTGCCTCTCCAACTCATCCTGTAGCTaGTTCACGTCCGTCTCCAGCTCAGACACCCGTCCT +
Preference number: 6 (lower is better)
Translates to: RWSCCLSNSSCS*FTSVSSSDTRP
Trigger: AGGACGGGTGTCTGAGCTGGAGACGGACGTGAAGCAGCTACAGGATGAGTTGGAGAGGCAGCAGCTCCACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CCA 72 bp ACGAGGTCTCCGAGGACTCGTCCATGGAGGAGTCTGTaGATACGGCTGAGTCGGCACTGTCATTCCCTCGGA +
Preference number: 6 (lower is better)
Translates to: TRSPRTRPWRSL*IRLSRHCHSLG
Trigger: TCCGAGGGAATGACAGTGCCGACTCAGCCGTATCCACAGACTCCTCCATGGACGAGTCCTCGGAGACCTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS TCA 72 bp CAGCGTTCTTCTTGGCAATGGCCTCGTCCCGGTCCCTaGTGGCCTTCTGAAGCTGCTCCTTTGGCTCCTTGT +
Preference number: 6 (lower is better)
Translates to: QRSSWQWPRPGP*WPSEAAPLAPC
Trigger: ACAAGGAGCCAAAGGAGCAGCTTCAGAAGGCCATCAGGGACCGGGACGAGGCCATTGCCAAGAAGAACGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS TCA 72 bp GGCGCTGAGCCGATGCTCCAGCTCCCGTTTTCGATCTaGCAGCATCTTGATTTCAAGGACCTGCTCGGCCTG +
Preference number: 6 (lower is better)
Translates to: GAEPMLQLPFSI*QHLDFKDLLGL
Trigger: CAGGCCGAGCAGGTCCTTGAAATCAAGATGCTGTCAGATCGAAAACGGGAGCTGGAGCATCGGCTCAGCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS GCA 72 bp AGGTGCTCTAGCTTGTCCGTCAGCTCCTTGTGCATCTaGTCGTACTGCCGGCTCATGTCCTGGTTCCTCTCG +
Preference number: 6 (lower is better)
Translates to: RCSSLSVSSLCI*SYCRLMSWFLS
Trigger: CGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 72 bp TGGCTTTGGTGCAGCTGTAGGTCTTTGTCATGGCCCTaGCTTTCTAGGATCAGCACCCGGTCCTGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: WLWCSCRSLSWP*LSRISTRSCSS
Trigger: GGAGCTGCAGGACCGGGTGCTGATCCTAGAAAGGCAGGGCCATGACAAAGACCTACAGCTGCACCAAAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS GCA 72 bp GGCCGGCTCTGTTCCTTCAGGTGCGTGTCCATCAGCTaGCTGTCAATGACCCTGTGCATGTCATCCTGCCAA +
Preference number: 6 (lower is better)
Translates to: GRLCSFRCVSIS*LSMTLCMSSCQ
Trigger: TTGGCAGGATGACATGCACAGGGTCATTGACAGGCAGCTGATGGACACGCACCTGAAGGAACAGAGCCGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
CDS CCA 72 bp TCCAGCTGGCTTTGGTGCAGCTGTAGGTCTTTGTCATaGCCCTGCCTTTCTAGGATCAGCACCCGGTCCTGC +
Preference number: 6 (lower is better)
Translates to: SSWLWCSCRSLS*PCLSRISTRSC
Trigger: GCAGGACCGGGTGCTGATCCTAGAAAGGCAGGGCCATGACAAAGACCTACAGCTGCACCAAAGCCAGCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS TCA 72 bp CAAGGACCTGCTCGGCCTGCAGACTCTCCAGCCGGATaGTATGCTGGTTGGTGGAGGAATTTTTCTCCCGGA +
Preference number: 6 (lower is better)
Translates to: QGPARPADSPAG*YAGWWRNFSPG
Trigger: TCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCAGGTCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS GCA 72 bp AGCAGGTCATTCTCCTCCAAGGTGGCGCTGAGCCGATaGTCCAGCTCCCGTTTTCGATCTGACAGCATCTTG +
Preference number: 6 (lower is better)
Translates to: SRSFSSKVALSR*SSSRFRSDSIL
Trigger: CAAGATGCTGTCAGATCGAAAACGGGAGCTGGAGCATCGGCTCAGCGCCACCTTGGAGGAGAATGACCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 72 bp TGTTCTAGGTGCTCTAGCTTGTCCGTCAGCTCCTTGTaGATCTGCTCGTACTGCCGGCTCATGTCCTGGTTC +
Preference number: 6 (lower is better)
Translates to: CSRCSSLSVSSL*ICSYCRLMSWF
Trigger: GAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCTAGAACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 72 bp ACCTGCTCGGCCTGCAGACTCTCCAGCCGGATGATATaGTGGTTGGTGGAGGAATTTTTCTCCCGGAAGTCT +
Preference number: 6 (lower is better)
Translates to: TCSACRLSSRMI*WLVEEFFSRKS
Trigger: AGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCAGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS CAA 72 bp TCTTGTTCTAGGTGCTCTAGCTTGTCCGTCAGCTCCTaGTGCATCTGCTCGTACTGCCGGCTCATGTCCTGG +
Preference number: 6 (lower is better)
Translates to: SCSRCSSLSVSS*CICSYCRLMSW
Trigger: CCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCTAGAACAAGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CAA 90 bp AGGACCTGCTCGGCCTGCAGACTCTCCAGCCGGATGATATGCTGGTaGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCATGG +
Preference number: 6 (lower is better)
Translates to: RTCSACRLSSRMICW*VEEFFSRKSSLRAW
Trigger: CCATGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCAGGTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS TCA 72 bp GATGCTCCAGCTCCCGTTTTCGATCTGACAGCATCTTaGTTTCAAGGACCTGCTCGGCCTGCAGACTCTCCA +
Preference number: 6 (lower is better)
Translates to: DAPAPVFDLTAS*FQGPARPADSP
Trigger: TGGAGAGTCTGCAGGCCGAGCAGGTCCTTGAAATCAAGATGCTGTCAGATCGAAAACGGGAGCTGGAGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS GCA 72 bp TCTGACAGCATCTTGATTTCAAGGACCTGCTCGGCCTaGAGACTCTCCAGCCGGATGATATGCTGGTTGGTG +
Preference number: 6 (lower is better)
Translates to: SDSILISRTCSA*RLSSRMICWLV
Trigger: CACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCAGGTCCTTGAAATCAAGATGCTGTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS CCA 72 bp ACTTCAGATGCCCTGCTGAGTTGGTCCAGCAGCCTCTaGTTCTGTTCTGACAGTTCCTGGACAGCTCGTGTT +
Preference number: 6 (lower is better)
Translates to: TSDALLSWSSSL*FCSDSSWTARV
Trigger: AACACGAGCTGTCCAGGAACTGTCAGAACAGAACCAGAGGCTGCTGGACCAACTCAGCAGGGCATCTGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CCA 72 bp TGCTCGGCCTGCAGACTCTCCAGCCGGATGATATGCTaGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCT +
Preference number: 6 (lower is better)
Translates to: CSACRLSSRMIC*LVEEFFSRKSS
Trigger: AGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000141950.2
CDS CAA 90 bp TCATGTTTCTCTTGTTCTAGGTGCTCTAGCTTGTCCGTCAGCTCCTaGTGCATCTGCTCGTACTGCCGGCTCATGTCCTGGTTCCTCTCG +
Preference number: 6 (lower is better)
Translates to: SCFSCSRCSSLSVSS*CICSYCRLMSWFLS
Trigger: CGAGAGGAACCAGGACATGAGCCGGCAGTACGAGCAGATGCACAAGGAGCTGACGGACAAGCTAGAGCACCTAGAACAAGAGAAACATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 72 bp TTGATCTCGGCCTGCAGACTCTCCAGCCGGATGATATaGTGGTTGGTGGAGGAATTTTTCTCCCGGAAGTCT +
Preference number: 6 (lower is better)
Translates to: LISACRLSSRMI*WLVEEFFSRKS
Trigger: AGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGATCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CCA 72 bp ATCTCGGCCTGCAGACTCTCCAGCCGGATGATATGCTaGTTGGTGGAGGAATTTTTCTCCCGGAAGTCTTCT +
Preference number: 6 (lower is better)
Translates to: ISACRLSSRMIC*LVEEFFSRKSS
Trigger: AGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CAA 72 bp TCGGCCTGCAGACTCTCCAGCCGGATGATATGCTGGTaGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTG +
Preference number: 6 (lower is better)
Translates to: SACRLSSRMICW*VEEFFSRKSSL
Trigger: CAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS CAA 90 bp ATCTTGATCTCGGCCTGCAGACTCTCCAGCCGGATGATATGCTGGTaGGTGGAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCATGG +
Preference number: 6 (lower is better)
Translates to: ILISACRLSSRMICW*VEEFFSRKSSLRAW
Trigger: CCATGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTCCACCAACCAGCATATCATCCGGCTGGAGAGTCTGCAGGCCGAGATCAAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055408.13
CDS CAA 72 bp TCCAGTAGCTGGCTGTTCAGAGACATCATATCCATCTaGCACTTGGCGAGTTCCAGCTCCACAGCGTTCTTC +
Preference number: 6 (lower is better)
Translates to: SSSWLFRDIISI*HLASSSSTAFF
Trigger: GAAGAACGCTGTGGAGCTGGAACTCGCCAAGTGCAAGATGGATATGATGTCTCTGAACAGCCAGCTACTGGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000148276.3
CDS GCA 72 bp TTTTTCTCCCGGAAGTCTTCTTTGAGAGCATGGACCTaGATGGAGAGCTGTCTCTCAACTTCAGATGCCCTG +
Preference number: 6 (lower is better)
Translates to: FFSRKSSLRAWT*MESCLSTSDAL
Trigger: CAGGGCATCTGAAGTTGAGAGACAGCTCTCCATGCAGGTCCATGCTCTCAAAGAAGACTTCCGGGAGAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2
CDS GCA 72 bp ATGAGCTCCCTCAGGGCTCTTGAGTCCTCACTGGTCTaGCTTATTTGTTCTTCTAAGGAGTCATCGTCCATC +
Preference number: 6 (lower is better)
Translates to: MSSLRALESSLV*LICSSKESSSI
Trigger: GATGGACGATGACTCCTTAGAAGAACAAATAAGGCAGACCAGTGAGGACTCAAGAGCCCTGAGGGAGCTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148276.3
CDS CCA 72 bp CCTCCAGCTGCTGAGAGAGGTTCAGTTTTTGCTGAATaGCATCCAGTAGCTGGCTGTTCAGAGACATCATAT +
Preference number: 6 (lower is better)
Translates to: PPAAERGSVFAE*HPVAGCSETSY
Trigger: ATATGATGTCTCTGAACAGCCAGCTACTGGATGCCATTCAGCAAAAACTGAACCTCTCTCAGCAGCTGGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000055408.13
ENSMUST00000118576.8
ENSMUST00000121746.8
ENSMUST00000141976.2
ENSMUST00000148276.3
CDS CCA 72 bp GAGGAATTTTTCTCCCGGAAGTCTTCTTTGAGAGCATaGACCTGCATGGAGAGCTGTCTCTCAACTTCAGAT +
Preference number: 6 (lower is better)
Translates to: EEFFSRKSSLRA*TCMESCLSTSD
Trigger: ATCTGAAGTTGAGAGACAGCTCTCCATGCAGGTCCATGCTCTCAAAGAAGACTTCCGGGAGAAAAATTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055408.13
ENSMUST00000141950.2