Pregenerated sensors for BHMT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074768Ensembl transcript IDs: ENSMUST00000099309.6
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGAAGTTACTATGACATTTATGGTGGTTTGTGTCCTACACTCCTaGCTGAAATGGGACTCACACCTAGGTGACTTTCTCTTTGCCGCA | + |
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Preference number: 1 (lower is better) Translates to: PEVTMTFMVVCVLHS*LKWDSHLGDFLFAA Trigger: TGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGAGTGTAGGACACAAACCACCATAAATGTCATAGTAACTTCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR CCA 90 bp | ACTATGACATTTATGGTGGTTTGTGTCCTACACTCCTGCCTGAAATaGGACTCACACCTAGGTGACTTTCTCTTTGCCGCAGTGACTTCT | + |
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Preference number: 1 (lower is better) Translates to: TMTFMVVCVLHSCLK*DSHLGDFLFAAVTS Trigger: AGAAGTCACTGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGAGTGTAGGACACAAACCACCATAAATGTCATAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR TCA 90 bp | GACTCACACCTAGGTGACTTTCTCTTTGCCGCAGTGACTTCTGTATaGCTGTTTGTTACACGGCAGGTACTTAGAAAATTTATTCAGGAT | + |
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Preference number: 1 (lower is better) Translates to: DSHLGDFLFAAVTSV*LFVTRQVLRKFIQD Trigger: ATCCTGAATAAATTTTCTAAGTACCTGCCGTGTAACAAACAGTCATACAGAAGTCACTGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR GCA 90 bp | AAGATCTTAGGATCCACTGCCAGCAGCACCTTAGATAAAGTTGGTTaGTATGTCCTTTATGATATGGTCCCTGAAGTTACTATGACATTT | + |
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Preference number: 1 (lower is better) Translates to: KILGSTASSTLDKVG*YVLYDMVPEVTMTF Trigger: AAATGTCATAGTAACTTCAGGGACCATATCATAAAGGACATAGCAACCAACTTTATCTAAGGTGCTGCTGGCAGTGGATCCTAAGATCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR-3UTR CCA 90 bp | GTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGCTGGTATTAACAATTGAGGCCCAGGCATaGAGGGATTTACCCCAAACT | + |
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Preference number: 2 (lower is better) Translates to: VIPFCLTSTNHRCRLVLTIEAQA*RDLPQT Trigger: AGTTTGGGGTAAATCCCTCCATGCCTGGGCCTCAAT...TGTTAATACCAGCCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR-3UTR TCA 90 bp | CAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATATGTTAAGTTTTACAGGGGCAGTGACTTCTGTATaGCTGTTTGTTACACGGCAG | + |
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Preference number: 2 (lower is better) Translates to: QNSSPLFLLCGYMLSFTGAVTSV*LFVTRQ Trigger: CTGCCGTGTAACAAACAGTCATACAGAAGTCACTGC...CCCTGTAAAACTTAACATATAACCACAAAGAAGAAACAATGGACTGCTATTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR TCA 72 bp | CTGACTTTCAGCCATCTTTTCCTTCCGGGCACACATTaGGGCCCAGGCATGGAGGGATTTACCCCAAACTGT | + |
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Preference number: 3 (lower is better) Translates to: LTFSHLFLPGTH*GPGMEGFTPNC Trigger: ACAGTTTGGGGTAAATCCCTCCATGCCTGGGCCTCAATGTGTGCCCGGAAGGAAAAGATGGCTGAAAGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR CCA 72 bp | TTTATGGTGGTTTGTGTCCTACACTCCTGCCTGAAATaGGACTCACACCTAGGTGACTTTCTCTTTGCCGCA | + |
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Preference number: 3 (lower is better) Translates to: FMVVCVLHSCLK*DSHLGDFLFAA Trigger: TGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGAGTGTAGGACACAAACCACCATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR-3UTR CAA 90 bp | ATGCTATTATTTGTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGCCTTCCGGGCACACATaGAGGCCCAGGCATGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: MLLFVIPFCLTSTNHRCRPSGHT*RPRHGG Trigger: CCCTCCATGCCTGGGCCTCAATGTGTGCCCGGAAGG...CCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCACAAATAATAGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR GCA 72 bp | GGATCCACTGCCAGCAGCACCTTAGATAAAGTTGGTTaGTATGTCCTTTATGATATGGTCCCTGAAGTTACT | + |
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Preference number: 3 (lower is better) Translates to: GSTASSTLDKVG*YVLYDMVPEVT Trigger: AGTAACTTCAGGGACCATATCATAAAGGACATAGCAACCAACTTTATCTAAGGTGCTGCTGGCAGTGGATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR TCA 72 bp | GCTATGTCCTTTATGATATGGTCCCTGAAGTTACTATaGCATTTATGGTGGTTTGTGTCCTACACTCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: AMSFMIWSLKLL*HLWWFVSYTPA Trigger: GGCAGGAGTGTAGGACACAAACCACCATAAATGTCATAGTAACTTCAGGGACCATATCATAAAGGACATAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CCA 90 bp | TCTTTTCCTTCCGGGCACACATTGAGGCCCAGGCATGGAGGGATTTACCCCAAAAGGTATGAAGGCGTCTaGCTCACGCCTCCTGCAACC | + |
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Preference number: 4 (lower is better) Translates to: SFPSGHTLRPRHGGIYPKRYEGV*LTPPAT Trigger: GGTTGCAGGAGGCGTGAGCCAGACGCCTTCATACCT...TTTGGGGTAAATCCCTCCATGCCTGGGCCTCAATGTGTGCCCGGAAGGAAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| 3UTR CAA 72 bp | ACTGACTTTCAGCCATCTTTTCCTTCCGGGCACACATaGAGGCCCAGGCATGGAGGGATTTACCCCAAACTG | + |
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Preference number: 4 (lower is better) Translates to: TDFQPSFPSGHT*RPRHGGIYPKL Trigger: CAGTTTGGGGTAAATCCCTCCATGCCTGGGCCTCAATGTGTGCCCGGAAGGAAAAGATGGCTGAAAGTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | TCAGCCATCTTTTCCTTCCGGGCACACATTGAGGCCCAGGCATGGAGGGATTTAGCTTCGTTGACTTTCTaGCCAGAAATCTTCTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SAIFSFRAHIEAQAWRDLASLTF*PEIFSA Trigger: GGCAGAGAAGATTTCTGGGCAGAAAGTCAACGAAGC...TAAATCCCTCCATGCCTGGGCCTCAATGTGTGCCCGGAAGGAAAAGATGGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | CTACACTCCTGCCTGAAATGGGACTCACACCTAGGTGACTTTCTCTTTGCCGCAATCAGCCACTTGCCGTaGAATGTCACAAGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LHSCLKWDSHLGDFLFAAISHLP*NVTSSF Trigger: GAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGAT...TGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGAGTGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | TCCTGCCTGAAATGGGACTCACACCTAGGTGACTTTCTCTTTGCCGCAGTGACTGCCCCTCTTTTCCAGTaGAAAGACAAATCCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: SCLKWDSHLGDFLFAAVTAPLFQ*KDKSSI Trigger: GATGGAGGATTTGTCTTTGCACTGGAAAAGAGGGGC...AGTCACTGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR TCA 90 bp | CTACACTCCTGCCTGAAATGGGACTCACACCTAGGTGACTTTCTCTTTGCCGCACAAAATACTCTGCAATaGGGAAGTCCACGTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LHSCLKWDSHLGDFLFAAQNTLQ*GSPRSS Trigger: AGAAGAACGTGGACTTCCTCATTGCAGAGTATTTTG...TGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGAGTGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | TCCTGCCTGAAATGGGACTCACACCTAGGTGACTTTCTCTTTGCCGCAGTGACTCCCAGAAATCTTCTCTaGCACATAGTTTCCTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: SCLKWDSHLGDFLFAAVTPRNLL*HIVSSV Trigger: AACAGAGGAAACTATGTGGCAGAGAAGATTTCTGGG...AGTCACTGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR TCA 90 bp | GTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGCTGGTATTAACACTTGCAGCTAAGGTATaGAGGCGTCTGGCTCACGCC | + |
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Preference number: 4 (lower is better) Translates to: VIPFCLTSTNHRCRLVLTLAAKV*RRLAHA Trigger: GGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAG...TGTTAATACCAGCCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | AAAGTTGGTTGCTATGTCCTTTATGATATGGTCCCTGAAGTTACTATGACATTTGTGGCCTCCTTCTGCTaGATCAGCTCGGCTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: KVGCYVLYDMVPEVTMTFVASFC*ISSAAP Trigger: GGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCAC...AAATGTCATAGTAACTTCAGGGACCATATCATAAAGGACATAGCAACCAACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | GTCCTTTATGATATGGTCCCTGAAGTTACTATGACATTTATGGTGGTTTGTGTCGTAGTGGCCTCCTTCTaGTGCATCAGCTCGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VLYDMVPEVTMTFMVVCVVVASF*CISSAA Trigger: AGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTAC...GACACAAACCACCATAAATGTCATAGTAACTTCAGGGACCATATCATAAAGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR TCA 90 bp | GTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGCTGGTATTAACACGTTCGATCCAGCTCTaGGGAACTCCCGATGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: VIPFCLTSTNHRCRLVLTRSIQL*GTPDEA Trigger: AGCTTCATCGGGAGTTCCTCAGAGCTGGATCGAACG...TGTTAATACCAGCCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | AATGGAATAGAAGCAGACAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATACTGCATCAGCTCGGCTaGTCCCTTAGTCACGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: NGIEADRIAVHCFFFVVILHQLG*SLSHAP Trigger: TGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAG...TATAACCACAAAGAAGAAACAATGGACTGCTATTCTGTCTGCTTCTATTCCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CCA 90 bp | AATGGAATAGAAGCAGACAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATACATCTGGCCGGGACATaGAAGGGTTGTACGGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: NGIEADRIAVHCFFFVVIHLAGT*KGCTAC Trigger: GCAGGCCGTACAACCCTTCCATGTCCCGGCCAGATG...TATAACCACAAAGAAGAAACAATGGACTGCTATTCTGTCTGCTTCTATTCCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | GTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGCTGGTATTAACACCTTCATCAGCCACTTaGCGTGCAATGTCACAAGCA | + |
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Preference number: 4 (lower is better) Translates to: VIPFCLTSTNHRCRLVLTPSSAT*RAMSQA Trigger: TGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGG...TGTTAATACCAGCCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR TCA 90 bp | ATGCTATTATTTGTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGCCACGTTCTTCTTCATaGACACCTCTAGCTGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: MLLFVIPFCLTSTNHRCRPRSSS*TPLAVG Trigger: GCCAACAGCTAGAGGTGTTCATGAAGAAGAACGTGG...CCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCACAAATAATAGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR TCA 90 bp | CAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATATGTTAAGTTTTACAGGGCCAAACCCTCCTTCATaGGCTTCACAGTCTGTAAGC | + |
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Preference number: 4 (lower is better) Translates to: QNSSPLFLLCGYMLSFTGPNPPS*ASQSVS Trigger: GCTTACAGACTGTGAAGCTCATGAAGGAGGGTTTGG...CCCTGTAAAACTTAACATATAACCACAAAGAAGAAACAATGGACTGCTATTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CCA 90 bp | CAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATATGTTAAGTTTTACAGGGCTAAGATCCCCTTCTTaGCCTTCTTGCCAGCAACTG | + |
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Preference number: 4 (lower is better) Translates to: QNSSPLFLLCGYMLSFTGLRSPS*PSCQQL Trigger: CAGTTGCTGGCAAGAAGGCCAAGAAGGGGATCTTAG...CCCTGTAAAACTTAACATATAACCACAAAGAAGAAACAATGGACTGCTATTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR TCA 90 bp | CAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATATGTTAAGTTTTACAGGGCACAAGCAGCTTCGTTaGCTTTCTGCCCAGAAATCT | + |
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Preference number: 4 (lower is better) Translates to: QNSSPLFLLCGYMLSFTGHKQLR*LSAQKS Trigger: AGATTTCTGGGCAGAAAGTCAACGAAGCTGCTTGTG...CCCTGTAAAACTTAACATATAACCACAAAGAAGAAACAATGGACTGCTATTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | AAAGTTGGTTGCTATGTCCTTTATGATATGGTCCCTGAAGTTACTATGACATTTGCTATTCGCAGATTCTaGCAGTATTCCTTTCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: KVGCYVLYDMVPEVTMTFAIRRF*QYSFLA Trigger: GGCCAGAAAGGAATACTGGCAGAATCTGCGAATAGC...AAATGTCATAGTAACTTCAGGGACCATATCATAAAGGACATAGCAACCAACTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR GCA 90 bp | CAGAATAGCAGTCCATTGTTTCTTCTTTGTGGTTATATGTTAAGTTTTACAGGGCAGCTTGTCTTCACTTaGATAGAAAGTGAAGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: QNSSPLFLLCGYMLSFTGQLVFT*IESEGL Trigger: CAGACCTTCACTTTCTATGCAAGTGAAGACAAGCTG...CCCTGTAAAACTTAACATATAACCACAAAGAAGAAACAATGGACTGCTATTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 90 bp | CAGCTGCTGCTCAGTAGTGGCCTCCTTCTGCTGCATCAGCTCGGCTaGTCCCTTAGTCACGCCCCAAGCATCTGGCCGGGACATGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: QLLLSSGLLLLHQLG*SLSHAPSIWPGHGR Trigger: CCTTCCATGTCCCGGCCAGATGCTTGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAGCAGCAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 90 bp | CTGCTGCATCAGCTCGGCTGCTCCCTTAGTCACGCCCCAAGCATCTaGCCGGGACATGGAAGGGTTGTACGGCCTGCCGGAAGCTATTCG | + |
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Preference number: 5 (lower is better) Translates to: LLHQLGCSLSHAPSI*PGHGRVVRPAGSYS Trigger: CGAATAGCTTCCGGCAGGCCGTACAACCCTTCCATGTCCCGGCCAGATGCTTGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 90 bp | TCACGCCCCAAGCATCTGGCCGGGACATGGAAGGGTTGTACGGCCTaGCGGAAGCTATTCGCAGATTCTGCCAGTATTCCTTTCTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: SRPKHLAGTWKGCTA*RKLFADSASIPFWP Trigger: GGGCCAGAAAGGAATACTGGCAGAATCTGCGAATAGCTTCCGGCAGGCCGTACAACCCTTCCATGTCCCGGCCAGATGCTTGGGGCGTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 90 bp | TCAAAGAGCTCTCTCAGCTGCTGCTCAGTAGTGGCCTCCTTCTGCTaGATCAGCTCGGCTGCTCCCTTAGTCACGCCCCAAGCATCTGGC | + |
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Preference number: 5 (lower is better) Translates to: SKSSLSCCSVVASFC*ISSAAPLVTPQASG Trigger: GCCAGATGCTTGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAGCAGCAGCTGAGAGAGCTCTTTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 90 bp | TTTTCAAAGAGCTCTCTCAGCTGCTGCTCAGTAGTGGCCTCCTTCTaGTGCATCAGCTCGGCTGCTCCCTTAGTCACGCCCCAAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: FSKSSLSCCSVVASF*CISSAAPLVTPQAS Trigger: AGATGCTTGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAGCAGCAGCTGAGAGAGCTCTTTGAAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 90 bp | TGGCTCACGCCTCCTGCAACCAAAGCGTCTCCTTCATCAGCCACTTaGCGTGCAATGTCACAAGCAGCTTCGTTGACTTTCTGCCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: WLTPPATKASPSSAT*RAMSQAASLTFCPE Trigger: TTCTGGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTTGGTTGCAGGAGGCGTGAGCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 90 bp | CACGCCTCCTGCAACCAAAGCGTCTCCTTCATCAGCCACTTGCCGTaGAATGTCACAAGCAGCTTCGTTGACTTTCTGCCCAGAAATCTT | + |
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Preference number: 5 (lower is better) Translates to: HASCNQSVSFISHLP*NVTSSFVDFLPRNL Trigger: AAGATTTCTGGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTTGGTTGCAGGAGGCGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 90 bp | TTTTTCACTTCTACCTCACTCTTGCAGCTAAGGTATGAAGGCGTCTaGCTCACGCCTCCTGCAACCAAAGCGTCTCCTTCATCAGCCACT | + |
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Preference number: 5 (lower is better) Translates to: FFTSTSLLQLRYEGV*LTPPATKASPSSAT Trigger: AGTGGCTGATGAAGGAGACGCTTTGGTTGCAGGAGGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAGAGTGAGGTAGAAGTGAAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CAA 90 bp | CACTCCTGCCTGAAATGGGACTCACACCTAGGTGACTTTCTCTTTGCCGCAGTGTCACAAGCAGCTTCGTaGACTTTCTGCCCAGAAATC | + |
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Preference number: 5 (lower is better) Translates to: HSCLKWDSHLGDFLFAAVSQAAS*TFCPEI Trigger: GATTTCTGGGCAGAAAGTCAACGAAGCTGCTTGTGA...CACTGCGGCAAAGAGAAAGTCACCTAGGTGTGAGTCCCATTTCAGGCAGGAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CAA 90 bp | TCAGCCATCTTTTCCTTCCGGGCACACATTGAGGCCCAGGCATGGAGGGATTTATCAATAAATCCCTGTTaGCCACAGTCAGGGGTATGG | + |
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Preference number: 5 (lower is better) Translates to: SAIFSFRAHIEAQAWRDLSINPC*PQSGVW Trigger: CCATACCCCTGACTGTGGCAAACAGGGATTTATTGA...TAAATCCCTCCATGCCTGGGCCTCAATGTGTGCCCGGAAGGAAAAGATGGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS TCA 90 bp | GCGAAATATCTTTTTCACTTCTACCTCACTCTTGCAGCTAAGGTATaGAGGCGTCTGGCTCACGCCTCCTGCAACCAAAGCGTCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: AKYLFHFYLTLAAKV*RRLAHASCNQSVSF Trigger: GAAGGAGACGCTTTGGTTGCAGGAGGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAGAGTGAGGTAGAAGTGAAAAAGATATTTCGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS TCA 90 bp | CTCCTTCATCAGCCACTTGCCGTGCAATGTCACAAGCAGCTTCGTTaGCTTTCTGCCCAGAAATCTTCTCTGCCACATAGTTTCCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LLHQPLAVQCHKQLR*LSAQKSSLPHSFLC Trigger: ACAGAGGAAACTATGTGGCAGAGAAGATTTCTGGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 90 bp | GCAATGAGGAAGTCCACGTTCTTCTTCATGAACACCTCTAGCTGTTaGCGAAATATCTTTTTCACTTCTACCTCACTCTTGCAGCTAAGG | + |
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Preference number: 5 (lower is better) Translates to: AMRKSTFFFMNTSSC*RNIFFTSTSLLQLR Trigger: CCTTAGCTGCAAGAGTGAGGTAGAAGTGAAAAAGATATTTCGCCAACAGCTAGAGGTGTTCATGAAGAAGAACGTGGACTTCCTCATTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CAA 90 bp | GTCCTTTATGATATGGTCCCTGAAGTTACTATGACATTTATGGTGGTTTGTGTCTCCTTCATCAGCCACTaGCCGTGCAATGTCACAAGC | + |
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Preference number: 5 (lower is better) Translates to: VLYDMVPEVTMTFMVVCVSFISH*PCNVTS Trigger: GCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGA...GACACAAACCACCATAAATGTCATAGTAACTTCAGGGACCATATCATAAAGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CAA 90 bp | GGTTGCTATGTCCTTTATGATATGGTCCCTGAAGTTACTATGACATTTATGGTGTCTAAGATCCCCTTCTaGGCCTTCTTGCCAGCAACT | + |
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Preference number: 5 (lower is better) Translates to: GCYVLYDMVPEVTMTFMVSKIPF*AFLPAT Trigger: AGTTGCTGGCAAGAAGGCCAAGAAGGGGATCTTAGA...CACCATAAATGTCATAGTAACTTCAGGGACCATATCATAAAGGACATAGCAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS-3UTR CAA 90 bp | ATGCTATTATTTGTGATTCCATTTTGTCTAACTAGCACCAATCATAGGTGTAGGACTTCTACCTCACTCTaGCAGCTAAGGTATGAAGGC | + |
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Preference number: 5 (lower is better) Translates to: MLLFVIPFCLTSTNHRCRTSTSL*QLRYEG Trigger: GCCTTCATACCTTAGCTGCAAGAGTGAGGTAGAAGT...CCTACACCTATGATTGGTGCTAGTTAGACAAAATGGAATCACAAATAATAGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 72 bp | CAGCTCGGCTGCTCCCTTAGTCACGCCCCAAGCATCTaGCCGGGACATGGAAGGGTTGTACGGCCTGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: QLGCSLSHAPSI*PGHGRVVRPAG Trigger: TCCGGCAGGCCGTACAACCCTTCCATGTCCCGGCCAGATGCTTGGGGCGTGACTAAGGGAGCAGCCGAGCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | GTCGAAGTGGCAGTTCACGCCGACAATGGAGGCGCCTaGTTTCACCAGACGCACGGCACACTCTCCAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: VEVAVHADNGGA*FHQTHGTLSRG Trigger: CCCCCTGGAGAGTGTGCCGTGCGTCTGGTGAAAGCAGGCGCCTCCATTGTCGGCGTGAACTGCCACTTCGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | CTCAGTAGTGGCCTCCTTCTGCTGCATCAGCTCGGCTaGTCCCTTAGTCACGCCCCAAGCATCTGGCCGGGA | + |
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Preference number: 6 (lower is better) Translates to: LSSGLLLLHQLG*SLSHAPSIWPG Trigger: TCCCGGCCAGATGCTTGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | AGCTCTCTCAGCTGCTGCTCAGTAGTGGCCTCCTTCTaGTGCATCAGCTCGGCTGCTCCCTTAGTCACGCCC | + |
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Preference number: 6 (lower is better) Translates to: SSLSCCSVVASF*CISSAAPLVTP Trigger: GGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAGCAGCAGCTGAGAGAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | TCCAGCTCTGAGGAACTCCCGATGAAGCTGACGAACTaGCTCAGGATGCTCCACGGCAGCTTCTGGGGTCCA | + |
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Preference number: 6 (lower is better) Translates to: SSSEELPMKLTN*LRMLHGSFWGP Trigger: TGGACCCCAGAAGCTGCCGTGGAGCATCCTGAGGCAGTTCGTCAGCTTCATCGGGAGTTCCTCAGAGCTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | TCTCTCAGCTGCTGCTCAGTAGTGGCCTCCTTCTGCTaGATCAGCTCGGCTGCTCCCTTAGTCACGCCCCAA | + |
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Preference number: 6 (lower is better) Translates to: SLSCCSVVASFC*ISSAAPLVTPQ Trigger: TTGGGGCGTGACTAAGGGAGCAGCCGAGCTGATGCAGCAGAAGGAGGCCACTACTGAGCAGCAGCTGAGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 72 bp | AGCTTCACAGTCTGTAAGCTGACGCTGGGGTCGAAGTaGCAGTTCACGCCGACAATGGAGGCGCCTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: SFTVCKLTLGSK*QFTPTMEAPAF Trigger: GAAAGCAGGCGCCTCCATTGTCGGCGTGAACTGCCACTTCGACCCCAGCGTCAGCTTACAGACTGTGAAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CAA 90 bp | CTGGCTCACGCCTCCTGCAACCAAAGCGTCTCCTTCATCAGCCACTaGCCGTGCAATGTCACAAGCAGCTTCGTTGACTTTCTGCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: LAHASCNQSVSFISH*PCNVTSSFVDFLPR Trigger: TCTGGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTTGGTTGCAGGAGGCGTGAGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | AAGCATCTGGCCGGGACATGGAAGGGTTGTACGGCCTaGCGGAAGCTATTCGCAGATTCTGCCAGTATTCCT | + |
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Preference number: 6 (lower is better) Translates to: KHLAGTWKGCTA*RKLFADSASIP Trigger: AGGAATACTGGCAGAATCTGCGAATAGCTTCCGGCAGGCCGTACAACCCTTCCATGTCCCGGCCAGATGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 72 bp | TCTACCTCACTCTTGCAGCTAAGGTATGAAGGCGTCTaGCTCACGCCTCCTGCAACCAAAGCGTCTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: STSLLQLRYEGV*LTPPATKASPS Trigger: TGAAGGAGACGCTTTGGTTGCAGGAGGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAGAGTGAGGTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | TGCAACCAAAGCGTCTCCTTCATCAGCCACTTGCCGTaGAATGTCACAAGCAGCTTCGTTGACTTTCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: CNQSVSFISHLP*NVTSSFVDFLP Trigger: GGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTTGGTTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS GCA 72 bp | CCTCCTGCAACCAAAGCGTCTCCTTCATCAGCCACTTaGCGTGCAATGTCACAAGCAGCTTCGTTGACTTTC | + |
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Preference number: 6 (lower is better) Translates to: PPATKASPSSAT*RAMSQAASLTF Trigger: GAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTTGGTTGCAGGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CAA 72 bp | GCCTCCTGCAACCAAAGCGTCTCCTTCATCAGCCACTaGCCGTGCAATGTCACAAGCAGCTTCGTTGACTTT | + |
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Preference number: 6 (lower is better) Translates to: ASCNQSVSFISH*PCNVTSSFVDF Trigger: AAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTGATGAAGGAGACGCTTTGGTTGCAGGAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CAA 90 bp | ACCTCTAGCTGTTGGCGAAATATCTTTTTCACTTCTACCTCACTCTaGCAGCTAAGGTATGAAGGCGTCTGGCTCACGCCTCCTGCAACC | + |
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Preference number: 6 (lower is better) Translates to: TSSCWRNIFFTSTSL*QLRYEGVWLTPPAT Trigger: GGTTGCAGGAGGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAGAGTGAGGTAGAAGTGAAAAAGATATTTCGCCAACAGCTAGAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS TCA 72 bp | CAGCCACTTGCCGTGCAATGTCACAAGCAGCTTCGTTaGCTTTCTGCCCAGAAATCTTCTCTGCCACATAGT | + |
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Preference number: 6 (lower is better) Translates to: QPLAVQCHKQLR*LSAQKSSLPHS Trigger: ACTATGTGGCAGAGAAGATTTCTGGGCAGAAAGTCAACGAAGCTGCTTGTGACATTGCACGGCAAGTGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 72 bp | AGTGGCAACTCGGGGTTCCAATCCAAAGGGGAATTCTaGGAGATCAATAAATCCCTGTTTGCCACAGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: SGNSGFQSKGEF*EINKSLFATVR Trigger: CCTGACTGTGGCAAACAGGGATTTATTGATCTCCCAGAATTCCCCTTTGGATTGGAACCCCGAGTTGCCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CAA 72 bp | TGTTGGCGAAATATCTTTTTCACTTCTACCTCACTCTaGCAGCTAAGGTATGAAGGCGTCTGGCTCACGCCT | + |
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Preference number: 6 (lower is better) Translates to: CWRNIFFTSTSL*QLRYEGVWLTP Trigger: AGGCGTGAGCCAGACGCCTTCATACCTTAGCTGCAAGAGTGAGGTAGAAGTGAAAAAGATATTTCGCCAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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| CDS CCA 72 bp | AAGTCCACGTTCTTCTTCATGAACACCTCTAGCTGTTaGCGAAATATCTTTTTCACTTCTACCTCACTCTTG | + |
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Preference number: 6 (lower is better) Translates to: KSTFFFMNTSSC*RNIFFTSTSLL Trigger: CAAGAGTGAGGTAGAAGTGAAAAAGATATTTCGCCAACAGCTAGAGGTGTTCATGAAGAAGAACGTGGACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099309.6 |
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