Pregenerated sensors for BHLHE40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030103Ensembl transcript IDs: ENSMUST00000032194.11, ENSMUST00000163617.2
Found 124 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGGGAAGGGACCTGCAGAAATTTGCCCAAACCACTACCGAGACATaGCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCAGCCTG | + |
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Preference number: 1 (lower is better) Translates to: GGRDLQKFAQTTTET*QCWRPHHLSRKLSL Trigger: CAGGCTGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGGTTTGGGCAAATTTCTGCAGGTCCCTTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 90 bp | TACAAGCACGCACGCACGCACACTCACTCACTCTCACACACACTCTaGATCTTCTCTGTGGGTCTGCAGGGTGGGCTGATCTCTCTGCAC | + |
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Preference number: 1 (lower is better) Translates to: YKHARTHTHSLSHTL*IFSVGLQGGLISLH Trigger: GTGCAGAGAGATCAGCCCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTGTGCGTGCGTGCGTGCTTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 90 bp | GCTAGAAACAGGTGCCAGAGGCCTGAGGACGGGTCTAGTTCACCTTaGTTCCCTAGCAGCTCAGCTTGGACAAAGGGGACCATTTTCAGT | + |
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Preference number: 1 (lower is better) Translates to: ARNRCQRPEDGSSSP*FPSSSAWTKGTIFS Trigger: ACTGAAAATGGTCCCCTTTGTCCAAGCTGAGCTGCTAGGGAATCAAGGTGAACTAGACCCGTCCTCAGGCCTCTGGCACCTGTTTCTAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 90 bp | TCTGTGTACTTTGGGACGTTTGGGGGCATCTCCGAGAGCCTCCTTTaGTTCCTTGGACAGCATGCCGTAGAAGTGAGAGCTAGAAACAGG | + |
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Preference number: 1 (lower is better) Translates to: SVYFGTFGGISESLL*FLGQHAVEVRARNR Trigger: CCTGTTTCTAGCTCTCACTTCTACGGCATGCTGTCCAAGGAACCAAAGGAGGCTCTCGGAGATGCCCCCAAACGTCCCAAAGTACACAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 90 bp | CTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTaGGCTGATCTCTCTGCACTCAGGGAAACCTTTGTGGTTTTTGGA | + |
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Preference number: 1 (lower is better) Translates to: LTLTHTLNLLCGSAG*ADLSALRETFVVFG Trigger: TCCAAAAACCACAAAGGTTTCCCTGAGTGCAGAGAGATCAGCCCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR GCA 90 bp | AAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGAAAGCTGGTaGAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATCA | + |
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Preference number: 1 (lower is better) Translates to: KWENFNTSRVHLESW*RAGGASQGNKDSGS Trigger: TGATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 90 bp | TGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTaGAAAGCTGGTGCAGGGCTGGTGGAGCAAGTCAAGGAAACAAGG | + |
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Preference number: 1 (lower is better) Translates to: CPNKNGRISTQAECI*KAGAGLVEQVKETR Trigger: CCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 90 bp | CCTTTTCTCAAAGCCACAGACAGACCCATGTCCCAAACTGGAGAGTaGCTCACAGATCAAGCCTTTGAAGCATATGAAAATCCAACCGAT | + |
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Preference number: 1 (lower is better) Translates to: PFLKATDRPMSQTGE*LTDQAFEAYENPTD Trigger: ATCGGTTGGATTTTCATATGCTTCAAAGGCTTGATCTGTGAGTCACTCTCCAGTTTGGGACATGGGTCTGTCTGTGGCTTTGAGAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 90 bp | TTTCAACACAAGCAGAGTGCATTTGGAAAGCTGGTGCAGGGCTGGTaGAGCAAGTCAAGGAAACAAGGACTCTGGATCAAAAATAAAACG | + |
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Preference number: 1 (lower is better) Translates to: FQHKQSAFGKLVQGW*SKSRKQGLWIKNKT Trigger: CGTTTTATTTTTGATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 90 bp | GAATTTCAACACAAGCAGAGTGCATTTGGAAAGCTGGTGCAGGGCTaGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATCAAAAATAAA | + |
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Preference number: 1 (lower is better) Translates to: EFQHKQSAFGKLVQG*WSKSRKQGLWIKNK Trigger: TTTATTTTTGATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAATTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR TCA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCACTCCAGTCTGTCATCTaGTGTCAGGCTATCCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: PLPRHASVGDLTTLAESSLQSVI*CQAILL Trigger: GAGAAGGATAGCCTGACATCAGATGACAGACTGGAG...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CAA 90 bp | CAGGGTGGGCTGATCTCTCTGCACTCAGGGAAACCTTTGTGGTTTTaGGAATTAGGGAGGAAAGAAAGCAAGGCAGCAGGAGATCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: QGGLISLHSGKPLWF*ELGRKESKAAGDPS Trigger: GGAGGGATCTCCTGCTGCCTTGCTTTCTTTCCTCCCTAATTCCAAAAACCACAAAGGTTTCCCTGAGTGCAGAGAGATCAGCCCACCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR TCA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCAACTGTCAGTCTGCTGTaGGTCACCTCCACAATAAAG | + |
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Preference number: 2 (lower is better) Translates to: PLPRHASVGDLTTLAESSTVSLL*VTSTIK Trigger: CTTTATTGTGGAGGTGACTCACAGCAGACTGACAGT...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR TCA 90 bp | TTTTCTCAAAGCCACAGACAGACCCATGTCCCAAACTGGAGAGTGACTCACAGACTCTCACACACACTCTaGATCTTCTCTGTGGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: FSQSHRQTHVPNWRVTHRLSHTL*IFSVGL Trigger: CAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAG...TCTGTGAGTCACTCTCCAGTTTGGGACATGGGTCTGTCTGTGGCTTTGAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR TCA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGAGTCTGCAGGGTGGGCTaGTCTCTCTGCACTCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGVCRVG*SLCTQG Trigger: TCCCTGAGTGCAGAGAGATCAGCCCACCCTGCAGAC...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CCA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAATGTGGGTCTGCAGGGTaGGCTGATCTCTCTGCACTC | + |
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Preference number: 2 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKCGSAG*ADLSAL Trigger: GAGTGCAGAGAGATCAGCCCACCCTGCAGACCCACA...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR GCA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTGGACCTGCAGAAATTTaGCCAAACCACTACCGAGAC | + |
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Preference number: 2 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSGPAEI*PNHYRD Trigger: GTCTCGGTAGTGGTTTGGGCAAATTTCTGCAGGTCC...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR GCA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAACATTTGGAAAGCTGGTaGAGGGCTGGTGGAGCAAGT | + |
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Preference number: 2 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKHLESW*RAGGAS Trigger: ACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATG...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CCA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAAATAAAGGGAGAAGGGTaGGGTCCTAACAGCTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKIKGEG*GPNSWL Trigger: CAGCCAGCTGTTAGGACCCCACCCTTCTCCCTTTAT...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CCA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGACTACAGAAAGGATCTTaGGGTGCCAAAGCTCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGLQKGS*GAKALL Trigger: TAGCAGAGCTTTGGCACCCCAAGATCCTTTCTGTAG...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 72 bp | AGGTGCCAGAGGCCTGAGGACGGGTCTAGTTCACCTTaGTTCCCTAGCAGCTCAGCTTGGACAAAGGGGACC | + |
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Preference number: 3 (lower is better) Translates to: RCQRPEDGSSSP*FPSSSAWTKGT Trigger: GGTCCCCTTTGTCCAAGCTGAGCTGCTAGGGAATCAAGGTGAACTAGACCCGTCCTCAGGCCTCTGGCACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 72 bp | GTTGGCGACCTCACCACCTTAGCAGAAAGCTCAGCCTaGCCACTGTCAGTCTGCTGTGAGTCACCTCCACAA | + |
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Preference number: 3 (lower is better) Translates to: VGDLTTLAESSA*PLSVCCESPPQ Trigger: TTGTGGAGGTGACTCACAGCAGACTGACAGTGGTCAGGCTGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 72 bp | GCCCAGAGATGTGCTACAGTCCTCCAGTCTGTCATCTaGTGTCAGGCTATCCTTCTCGTGTCTCCCTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: AQRCATVLQSVI*CQAILLVSPLC Trigger: ACACAAGGGAGACACGAGAAGGATAGCCTGACATCAGATGACAGACTGGAGGACTGTAGCACATCTCTGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR GCA 72 bp | GACCTGCAGAAATTTGCCCAAACCACTACCGAGACATaGCAGTGTTGGCGACCTCACCACCTTAGCAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: DLQKFAQTTTET*QCWRPHHLSRK Trigger: CTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGGTTTGGGCAAATTTCTGCAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | ACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTaGGCTGATCTCTCTGCACTCAGGGAAACCTTTGTG | + |
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Preference number: 3 (lower is better) Translates to: THTLNLLCGSAG*ADLSALRETFV Trigger: CACAAAGGTTTCCCTGAGTGCAGAGAGATCAGCCCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | AAATTTGCCCAAACCACTACCGAGACATGCCAGTGTTaGCGACCTCACCACCTTAGCAGAAAGCTCAGCCTG | + |
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Preference number: 3 (lower is better) Translates to: KFAQTTTETCQC*RPHHLSRKLSL Trigger: CAGGCTGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGGTTTGGGCAAATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | CACAAGCAGAGTGCATTTGGAAAGCTGGTGCAGGGCTaGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: HKQSAFGKLVQG*WSKSRKQGLWI Trigger: GATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 72 bp | CACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGGCTaGTCTCTCTGCACTCAGGGAAACCTTTGTGGTTTT | + |
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Preference number: 3 (lower is better) Translates to: HSESSLWVCRVG*SLCTQGNLCGF Trigger: AAAACCACAAAGGTTTCCCTGAGTGCAGAGAGATCAGCCCACCCTGCAGACCCACAGAGAAGATTCAGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | ACTCCACTCATGGTCTTTATTCATCAGAGACGGGGTTaGGGGGAAGGGACCTGCAGAAATTTGCCCAAACCA | + |
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Preference number: 3 (lower is better) Translates to: TPLMVFIHQRRG*GEGTCRNLPKP Trigger: TGGTTTGGGCAAATTTCTGCAGGTCCCTTCCCCCCAACCCCGTCTCTGATGAATAAAGACCATGAGTGGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | AAGCAGAGTGCATTTGGAAAGCTGGTGCAGGGCTGGTaGAGCAAGTCAAGGAAACAAGGACTCTGGATCAAA | + |
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Preference number: 3 (lower is better) Translates to: KQSAFGKLVQGW*SKSRKQGLWIK Trigger: TTTGATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR GCA 72 bp | AATTTCAACACAAGCAGAGTGCATTTGGAAAGCTGGTaGAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: NFNTSRVHLESW*RAGGASQGNKD Trigger: GTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | GAGAATTTCAACACAAGCAGAGTGCATTTGGAAAGCTaGTGCAGGGCTGGTGGAGCAAGTCAAGGAAACAAG | + |
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Preference number: 3 (lower is better) Translates to: ENFNTSRVHLES*CRAGGASQGNK Trigger: CTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAATTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | AAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTaGAAAGCTGGTGCAGGGCTGGTGGAGCAAGTCAAG | + |
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Preference number: 3 (lower is better) Translates to: KNGRISTQAECI*KAGAGLVEQVK Trigger: CTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CAA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAACACTCAGGGAAACCTTaGTGGTTTTTGGAATTAGGG | + |
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Preference number: 3 (lower is better) Translates to: LAVSCALESPLLKVPFLKHSGKP*WFLELG Trigger: CCCTAATTCCAAAAACCACAAAGGTTTCCCTGAGTG...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 72 bp | AAAGCCACAGACAGACCCATGTCCCAAACTGGAGAGTaGCTCACAGATCAAGCCTTTGAAGCATATGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: KATDRPMSQTGE*LTDQAFEAYEN Trigger: ATTTTCATATGCTTCAAAGGCTTGATCTGTGAGTCACTCTCCAGTTTGGGACATGGGTCTGTCTGTGGCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CCA 72 bp | CAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGACTCTaGATCAAAAATAAAACGTCCTTAAAGGAGATGGAA | + |
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Preference number: 3 (lower is better) Translates to: QGWWSKSRKQGL*IKNKTSLKEME Trigger: TTCCATCTCCTTTAAGGACGTTTTATTTTTGATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CAA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAATCACAGATCAAGCCTTaGAAGCATATGAAAATCCAA | + |
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Preference number: 3 (lower is better) Translates to: LAVSCALESPLLKVPFLKSQIKP*KHMKIQ Trigger: TTGGATTTTCATATGCTTCAAAGGCTTGATCTGTGA...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CAA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGACCTACAGAAAGGATCTaGGGGTGCCAAAGCTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGPTERI*GCQSSA Trigger: AGCAGAGCTTTGGCACCCCAAGATCCTTTCTGTAGG...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR TCA 72 bp | CATTTTCAGTTCCTTAGTAAACTACTCACAAAAGCCTaGGTTAAGGAACTCCACTCATGGTCTTTATTCATC | + |
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Preference number: 3 (lower is better) Translates to: HFQFLSKLLTKA*VKELHSWSLFI Trigger: GATGAATAAAGACCATGAGTGGAGTTCCTTAACTCAGGCTTTTGTGAGTAGTTTACTAAGGAACTGAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR-3UTR CAA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAAAAACCTTTGTGGTTTTaGGAATTAGGGAGGAAAGAA | + |
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Preference number: 3 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKKPLWF*ELGRKE Trigger: TTCTTTCCTCCCTAATTCCAAAAACCACAAAGGTTT...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 37% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCAGGGAGCCGAGTCCAATaGTTTCCTGGAAGCACCACC | + |
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Preference number: 4 (lower is better) Translates to: PLPRHASVGDLTTLAESSGSRVQ*FPGSTT Trigger: GGTGGTGCTTCCAGGAAACCATTGGACTCGGCTCCC...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | CACTCACTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGGGCAAAATCCATCCCTaGCAGGTCTCCGTGCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: HSLTLTHTLNLLCGSAGWGKIHP*QVSVLQ Trigger: CTGGAGCACGGAGACCTGTCAGGGATGGATTTTGCC...CCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCAAGGCAAAAAGGAGGCTaGTGTGGGTGTGGCCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: PLPRHASVGDLTTLAESSRQKGG*CGCGPR Trigger: TCTTGGGCCACACCCACATCAGCCTCCTTTTTGCCT...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCATCTTGTCTGGGTTCATaGAGCTGGAGAGGGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: PLPRHASVGDLTTLAESSSCLGS*SWRGLQ Trigger: CTGCAGCCCTCTCCAGCTTCATGAACCCAGACAAGA...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | GCTCAGCCTGACCACTGTCAGTCTGCTGTGAGTCACCTCCACAATAAAGGGAGAAGTACGGCTGCTCACTaGGCAAGTCCCCCTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: AQPDHCQSAVSHLHNKGRSTAAH*ASPPSP Trigger: TGGAGAAGGGGGACTTGCGCAGTGAGCAGCCGTACT...TCTCCCTTTATTGTGGAGGTGACTCACAGCAGACTGACAGTGGTCAGGCTGAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | GGAAAGCTGGTGCAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATCGCGAACCTGCGTCCATaGTCGCTTTTGAAGTACGGC | + |
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Preference number: 4 (lower is better) Translates to: GKLVQGWWSKSRKQGLWIANLRP*SLLKYG Trigger: GCCGTACTTCAAAAGCGACCATGGACGCAGGTTCGC...GATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | CACTCACTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGGTGGCCTTCCTCTTCTaGGAGCTGCATTCGGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: HSLTLTHTLNLLCGSAGWVAFLF*ELHSAL Trigger: AAGAGCCGAATGCAGCTCTCAGAAGAGGAAGGCCAC...CCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAACTGTGTCCGTGTCACTaGCGCTCTGCTCCCCACCCG | + |
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Preference number: 4 (lower is better) Translates to: LAVSCALESPLLKVPFLKLCPCH*RSAPHP Trigger: CGGGTGGGGAGCAGAGCGGCAGTGACACGGACACAG...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | GGAAAGCTGGTGCAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATCGTCGAGGGACGAATGTaGCAAAGGAGAAGGGAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: GKLVQGWWSKSRKQGLWIVEGRM*QRRRES Trigger: AGACTCCCTTCTCCTTTGGCACATTCGTCCCTCGAC...GATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | GCTCAGCCTGACCACTGTCAGTCTGCTGTGAGTCACCTCCACAATAAAGGGAGAGGCAGTGGCCGATGGTaGGATGAGATAGAAGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: AQPDHCQSAVSHLHNKGRGSGRW*DEIEGK Trigger: CTTCCCTTCTATCTCATCCCACCATCGGCCACTGCC...TCTCCCTTTATTGTGGAGGTGACTCACAGCAGACTGACAGTGGTCAGGCTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | CACTCACTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGTGGCCGATGGTGGGATaGGATAGAAGGGAAGGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: HSLTLTHTLNLLCGSAGWWPMVG*DRREGK Trigger: TTTGCCTTCCCTTCTATCTCATCCCACCATCGGCCA...CCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAACAGGTAGGAGGTGGTTaGGCGCTGGGGATCCGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LAVSCALESPLLKVPFLKQVGGG*ALGIRS Trigger: GGAACGGATCCCCAGCGCGCAACCACCTCCTACCTG...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR TCA 90 bp | TTTTCTCAAAGCCACAGACAGACCCATGTCCCAAACTGGAGAGTGACTCACAGACTGCAGCTGAGGTGTTaGGGCCTGGGTATAACACTG | + |
|
Preference number: 4 (lower is better) Translates to: FSQSHRQTHVPNWRVTHRLQLRC*GLGITL Trigger: CAGTGTTATACCCAGGCCTCAACACCTCAGCTGCAG...TCTGTGAGTCACTCTCCAGTTTGGGACATGGGTCTGTCTGTGGCTTTGAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | GGAAAGCTGGTGCAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATCTTTAAAGGAGGGATCTaGTTCAAAGCCTGGAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GKLVQGWWSKSRKQGLWIFKGGI*FKAWSK Trigger: CTTGCTCCAGGCTTTGAAGCAGATCCCTCCTTTAAA...GATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | CACTCACTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGAGTCGGTATCTTGTCTaGGTTCATGAAGCTGGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: HSLTLTHTLNLLCGSAGWSRYLV*VHEAGE Trigger: CTCTCCAGCTTCATGAACCCAGACAAGATACCGACT...CCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | CACTCACTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGGGCTCTTCGGATTCTTaGTTAATTGTGCTGACACGT | + |
|
Preference number: 4 (lower is better) Translates to: HSLTLTHTLNLLCGSAGWGSSDS*LIVLTR Trigger: ACGTGTCAGCACAATTAAGCAAGAATCCGAAGAGCC...CCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CAA 72 bp | GCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTaGGGGGCATCTCCGAGAGCCTCCTTTGGTTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: AIDYLALCTLGR*GASPRASFGSL Trigger: CAAGGAACCAAAGGAGGCTCTCGGAGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR TCA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTGTCCATGGTCGCTTTTaGAGTACGGCTGCTCACTGC | + |
|
Preference number: 4 (lower is better) Translates to: SVAIDYLALCTLGRLGASVHGRF*STAAHC Trigger: GCAGTGAGCAGCCGTACTTCAAAAGCGACCATGGAC...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTCTTTTGAAGTACGGCTaGTCACTGCGCAAGTCCCCC | + |
|
Preference number: 4 (lower is better) Translates to: SVAIDYLALCTLGRLGASLLKYG*SLRKSP Trigger: GGGGGACTTGCGCAGTGAGCAGCCGTACTTCAAAAG...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CCA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAACAGGCAGGTAGGAGGTaGTTGCGCGCTGGGGATCCG | + |
|
Preference number: 4 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKQAGRR*LRAGDP Trigger: CGGATCCCCAGCGCGCAACCACCTCCTACCTGCCTG...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CCA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAAAGTCCGCTGGATGACTaGCACACAGTTTTTCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LAVSCALESPLLKVPFLKSPLDD*HTVFPR Trigger: CCTGGGAAAAACTGTGTGCCAGTCATCCAGCGGACT...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR TCA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAACACGATGGAGATGAGTaGCGAGCTGGGAAGATTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LAVSCALESPLLKVPFLKHDGDE*RAGKIS Trigger: TGAAATCTTCCCAGCTCGTCACTCATCTCCATCGTG...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAATCCGTGCTCCAGCCCTaGAGCTTTGGGCAGGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKSVLQP*SFGQAG Trigger: ACCTGCCTGCCCAAAGCTCCAGGGCTGGAGCACGGA...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CCA 90 bp | TTTTCTCAAAGCCACAGACAGACCCATGTCCCAAACTGGAGAGTGACTCACAGACTGGACTTGTACACTTaGTACATGTGGGCAAAATCC | + |
|
Preference number: 4 (lower is better) Translates to: FSQSHRQTHVPNWRVTHRLDLYT*YMWAKS Trigger: GGATTTTGCCCACATGTACCAAGTGTACAAGTCCAG...TCTGTGAGTCACTCTCCAGTTTGGGACATGGGTCTGTCTGTGGCTTTGAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAAAGGAGATCCTTCAGCTaGGCAATGCACTCGTTAATC | + |
|
Preference number: 4 (lower is better) Translates to: LAVSCALESPLLKVPFLKRRSFS*AMHSLI Trigger: GATTAACGAGTGCATTGCCCAGCTGAAGGATCTCCT...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CCA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTGTGTGGCCCAAGAAATaGGGAACCCATCAGATCACT | + |
|
Preference number: 4 (lower is better) Translates to: SVAIDYLALCTLGRLGASVWPKK*GTHQIT Trigger: AGTGATCTGATGGGTTCCCCATTTCTTGGGCCACAC...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CCA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTGGAGAAGGGAGTCTCTaGGGCAGAAGCAAGGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSGEGSL*GRSKGV Trigger: GACTCCCTTGCTTCTGCCCCAGAGACTCCCTTCTCC...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | CTGGCTGTGAGCTGTGCTCTGGAAAGCCCTCTTTTGAAAGTACCTTTTCTCAAAGTTTTATTCCCCGCCTaGACTTGTACACTTGGTACA | + |
|
Preference number: 4 (lower is better) Translates to: LAVSCALESPLLKVPFLKVLFPA*TCTLGT Trigger: TGTACCAAGTGTACAAGTCCAGGCGGGGAATAAAAC...TTTGAGAAAAGGTACTTTCAAAAGAGGGCTTTCCAGAGCACAGCTCACAGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTTCACGGGCACAAGTCTaGAAACCTGAGCAGAACATT | + |
|
Preference number: 4 (lower is better) Translates to: SVAIDYLALCTLGRLGASSRAQV*KPEQNI Trigger: AATGTTCTGCTCAGGTTTCCAGACTTGTGCCCGTGA...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CAA 72 bp | ATAAGTGTAGCAATTGATTACTTAGCTCTGTGTACTTaGGGACGTTTGGGGGCATCTCCGAGAGCCTCCTTT | + |
|
Preference number: 4 (lower is better) Translates to: ISVAIDYLALCT*GRLGASPRASF Trigger: AAAGGAGGCTCTCGGAGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR TCA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTCGCTCTGCAGGGCAATaGTTTTCTGCTGCTGCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSRSAGQ*FSAAAD Trigger: ATCAGCAGCAGCAGAAAATCATTGCCCTGCAGAGCG...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTAGTCCAATGGTTTCCTaGAAGCACCACCCTGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSSPMVS*KHHPAA Trigger: TGCTGCAGGGTGGTGCTTCCAGGAAACCATTGGACT...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTACTGCTTTTTCCAAGTaGCCCAAAGTAGTAAGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SVAIDYLALCTLGRLGASTAFSK*PKVVSL Trigger: CAAACTTACTACTTTGGGTCACTTGGAAAAAGCAGT...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTACAAGTCTGGAAACCTaGGCAGAACATTTCTTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSTSLET*AEHFLP Trigger: GGGCAAGAAATGTTCTGCTCAGGTTTCCAGACTTGT...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | TGTCCTCAGTTGAGAGGACAGAGAAAGTACCGTGACACTAAGTTATTTTTAAAAGGAGCAAAAGTCCGCTaGATGACTGGCACACAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: CPQLRGQRKYRDTKLFLKGAKVR*MTGTQF Trigger: AAACTGTGTGCCAGTCATCCAGCGGACTTTTGCTCC...TTTTAAAAATAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CAA 72 bp | GAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTaGAAATCCGTGTCTAGCTGTGCAATAAGTGTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: EKLSLVQSFRIH*KSVSSCAISVA Trigger: TGCTACACTTATTGCACAGCTAGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR TCA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGACAAAAGTCCGCTGGATaGCTGGCACACAGTTTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGQKSAG*LAHSFS Trigger: GGAAAAACTGTGTGCCAGTCATCCAGCGGACTTTTG...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTTACACTTGGTACATGTaGGCAAAATCCATCCCTGAC | + |
|
Preference number: 4 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSYTWYM*AKSIPD Trigger: GTCAGGGATGGATTTTGCCCACATGTACCAAGTGTA...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CCA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGACCTTGGCTAGGAAGCTaGGCTTCTCTTTCAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGPWLGS*ASLSSP Trigger: TGGACTTGAAAGAGAAGCCCAGCTTCCTAGCCAAGG...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR GCA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGAGCTTGTAAACCGCTCTaGAGGGCAATGATTTTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGACKPL*RAMIFC Trigger: GCAGAAAATCATTGCCCTGCAGAGCGGTTTACAAGC...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| 3UTR CAA 72 bp | GCAATTATGTCAAGATTAACTAGTCACTGTCCTCAGTaGAGAGGACAGAGAAAGTACCGTGACACTAAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: AIMSRLTSHCPQ*RGQRKYRDTKL Trigger: TAACTTAGTGTCACGGTACTTTCTCTGTCCTCTCAACTGAGGACAGTGACTAGTTAATCTTGACATAATTGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CAA 90 bp | CACTCACTCACTCTCACACACACTCTGAATCTTCTCTGTGGGTCTGCAGGGTGGGCAGGTAGGAGGTGGTaGCGCGCTGGGGATCCGTTC | + |
|
Preference number: 5 (lower is better) Translates to: HSLTLTHTLNLLCGSAGWAGRRW*RAGDPF Trigger: GAACGGATCCCCAGCGCGCAACCACCTCCTACCTGC...CCACCCTGCAGACCCACAGAGAAGATTCAGAGTGTGTGTGAGAGTGAGTGAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS GCA 90 bp | TACACTTGGTACATGTGGGCAAAATCCATCCCTGACAGGTCTCCGTaGTCCAGCCCTGGAGCTTTGGGCAGGCAGGTAGGAGGTGGTTGC | + |
|
Preference number: 5 (lower is better) Translates to: YTWYMWAKSIPDRSP*SSPGALGRQVGGGC Trigger: GCAACCACCTCCTACCTGCCTGCCCAAAGCTCCAGGGCTGGAGCACGGAGACCTGTCAGGGATGGATTTTGCCCACATGTACCAAGTGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS GCA 90 bp | GCTGATGTGGGTGTGGCCCAAGAAATGGGGAACCCATCAGATCACTaGCCGCGAAGTGGCCTTCCTCTTCTGAGAGCTGCATTCGGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: ADVGVAQEMGNPSDH*PRSGLPLLRAAFGS Trigger: AGAGCCGAATGCAGCTCTCAGAAGAGGAAGGCCACTTCGCGGGCAGTGATCTGATGGGTTCCCCATTTCTTGGGCCACACCCACATCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 90 bp | AAGCACCACCCTGCAGCAGCTCCGAGACCACACGATGGAGATGAGTaGCGAGCTGGGAAGATTTCAGGTCCCGAGTGTTCTCATGCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: KHHPAAAPRPHDGDE*RAGKISGPECSHAS Trigger: CGAAGCATGAGAACACTCGGGACCTGAAATCTTCCCAGCTCGTCACTCATCTCCATCGTGTGGTCTCGGAGCTGCTGCAGGGTGGTGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS CCA 90 bp | TCTCTTTCAAGTCCACGGCTTTGGGAGCCGAGTCCAATGGTTTCCTaGAAGCACCACCCTGCAGCAGCTCCGAGACCACACGATGGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SLSSPRLWEPSPMVS*KHHPAAAPRPHDGD Trigger: ATCTCCATCGTGTGGTCTCGGAGCTGCTGCAGGGTGGTGCTTCCAGGAAACCATTGGACTCGGCTCCCAAAGCCGTGGACTTGAAAGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 90 bp | TGCTTAATTGTGCTGACACGTTCTCCCACGGCGAACCTGCGTCCATaGTCGCTTTTGAAGTACGGCTGCTCACTGCGCAAGTCCCCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: CLIVLTRSPTANLRP*SLLKYGCSLRKSPF Trigger: GAAGGGGGACTTGCGCAGTGAGCAGCCGTACTTCAAAAGCGACCATGGACGCAGGTTCGCCGTGGGAGAACGTGTCAGCACAATTAAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS CCA 90 bp | TGTGGCCCAAGAAATGGGGAACCCATCAGATCACTGCCCGCGAAGTaGCCTTCCTCTTCTGAGAGCTGCATTCGGCTCTTTTTGGTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: CGPRNGEPIRSLPAK*PSSSESCIRLFLVG Trigger: CCCCACCAAAAAGAGCCGAATGCAGCTCTCAGAAGAGGAAGGCCACTTCGCGGGCAGTGATCTGATGGGTTCCCCATTTCTTGGGCCACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS CCA 90 bp | GAAGGGAAGGCAAAAAGGAGGCTGATGTGGGTGTGGCCCAAGAAATaGGGAACCCATCAGATCACTGCCCGCGAAGTGGCCTTCCTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EGKAKRRLMWVWPKK*GTHQITAREVAFLF Trigger: GAAGAGGAAGGCCACTTCGCGGGCAGTGATCTGATGGGTTCCCCATTTCTTGGGCCACACCCACATCAGCCTCCTTTTTGCCTTCCCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS CCA 90 bp | GCACACAGTTTTTCCCAGGGCCTTCTGATCCCTTGGCTAGGAAGCTaGGCTTCTCTTTCAAGTCCACGGCTTTGGGAGCCGAGTCCAATG | + |
|
Preference number: 5 (lower is better) Translates to: AHSFSQGLLIPWLGS*ASLSSPRLWEPSPM Trigger: CATTGGACTCGGCTCCCAAAGCCGTGGACTTGAAAGAGAAGCCCAGCTTCCTAGCCAAGGGATCAGAAGGCCCTGGGAAAAACTGTGTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS CCA 90 bp | GCCGAAGAGTCGAGGGACGAATGTGCCAAAGGAGAAGGGAGTCTCTaGGGCAGAAGCAAGGGAGTCGGTATCTTGTCTGGGTTCATGAAG | + |
|
Preference number: 5 (lower is better) Translates to: AEESRDECAKGEGSL*GRSKGVGILSGFMK Trigger: CTTCATGAACCCAGACAAGATACCGACTCCCTTGCTTCTGCCCCAGAGACTCCCTTCTCCTTTGGCACATTCGTCCCTCGACTCTTCGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CAA 90 bp | GGAAAGCTGGTGCAGGGCTGGTGGAGCAAGTCAAGGAAACAAGGACTCTGGATCTTCAAGTCCACGGCTTaGGGAGCCGAGTCCAATGGT | + |
|
Preference number: 5 (lower is better) Translates to: GKLVQGWWSKSRKQGLWIFKSTA*GAESNG Trigger: ACCATTGGACTCGGCTCCCAAAGCCGTGGACTTGAA...GATCCAGAGTCCTTGTTTCCTTGACTTGCTCCACCAGCCCTGCACCAGCTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS-3UTR CAA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCACGTCCATGGTCGCTTTaGAAGTACGGCTGCTCACTG | + |
|
Preference number: 5 (lower is better) Translates to: PLPRHASVGDLTTLAESSRPWSL*KYGCSL Trigger: CAGTGAGCAGCCGTACTTCAAAAGCGACCATGGACG...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
||
| CDS TCA 90 bp | CTTCGCCAGGTACTGAAGTACCTCACGGGCACAAGTCTGGAAACCTaGGCAGAACATTTCTTGCCCTGCCTCGAGATTTCTTCCCGACAA | + |
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Preference number: 5 (lower is better) Translates to: LRQVLKYLTGTSLET*AEHFLPCLEISSRQ Trigger: TTGTCGGGAAGAAATCTCGAGGCAGGGCAAGAAATGTTCTGCTCAGGTTTCCAGACTTGTGCCCGTGAGGTACTTCAGTACCTGGCGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CAA 90 bp | CCACTACCGAGACATGCCAGTGTTGGCGACCTCACCACCTTAGCAGAAAGCTCACCTGGACTTGTACACTaGGTACATGTGGGCAAAATC | + |
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Preference number: 5 (lower is better) Translates to: PLPRHASVGDLTTLAESSPGLVH*VHVGKI Trigger: GATTTTGCCCACATGTACCAAGTGTACAAGTCCAGG...TGAGCTTTCTGCTAAGGTGGTGAGGTCGCCAACACTGGCATGTCTCGGTAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 90 bp | TGGGAAGATTTCAGGTCCCGAGTGTTCTCATGCTTCGCCAGGTACTaGAGTACCTCACGGGCACAAGTCTGGAAACCTGAGCAGAACATT | + |
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Preference number: 5 (lower is better) Translates to: WEDFRSRVFSCFARY*STSRAQVWKPEQNI Trigger: AATGTTCTGCTCAGGTTTCCAGACTTGTGCCCGTGAGGTACTTCAGTACCTGGCGAAGCATGAGAACACTCGGGACCTGAAATCTTCCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CAA 90 bp | TTTTCTCAAAGCCACAGACAGACCCATGTCCCAAACTGGAGAGTGACTCACAGAGCTGCAGCTGAGGTGTaGAGGCCTGGGTATAACACT | + |
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Preference number: 5 (lower is better) Translates to: FSQSHRQTHVPNWRVTHRAAAEV*RPGYNT Trigger: AGTGTTATACCCAGGCCTCAACACCTCAGCTGCAGC...TCTGTGAGTCACTCTCCAGTTTGGGACATGGGTCTGTCTGTGGCTTTGAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS GCA 90 bp | AGTACCTCACGGGCACAAGTCTGGAAACCTGAGCAGAACATTTCTTaGCCTGCCTCGAGATTTCTTCCCGACAAATCACCAGCTTGTAAA | + |
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Preference number: 5 (lower is better) Translates to: STSRAQVWKPEQNIS*PASRFLPDKSPACK Trigger: TTTACAAGCTGGTGATTTGTCGGGAAGAAATCTCGAGGCAGGGCAAGAAATGTTCTGCTCAGGTTTCCAGACTTGTGCCCGTGAGGTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 90 bp | CCCAAAGTAGTAAGTTTGAGATGTTCGGGTAGGAGATCCTTCAGCTaGGCAATGCACTCGTTAATCCGGTCACGTCTCTTTTTCTCAATC | + |
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Preference number: 5 (lower is better) Translates to: PKVVSLRCSGRRSFS*AMHSLIRSRLFFSI Trigger: GATTGAGAAAAAGAGACGTGACCGGATTAACGAGTGCATTGCCCAGCTGAAGGATCTCCTACCCGAACATCTCAAACTTACTACTTTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS-3UTR CAA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTAAGGGAGTCGGTATCTaGTCTGGGTTCATGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: SVAIDYLALCTLGRLGASKGVGI*SGFMKL Trigger: CAGCTTCATGAACCCAGACAAGATACCGACTCCCTT...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 90 bp | CCAGCTTGTAAACCGCTCTGCAGGGCAATGATTTTCTGCTGCTGCTaGTCAATTAGATTTGTCAATGCTTTCACGTGCTTCAACGTAAGC | + |
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Preference number: 5 (lower is better) Translates to: PACKPLCRAMIFCCC*SIRFVNAFTCFNVS Trigger: GCTTACGTTGAAGCACGTGAAAGCATTGACAAATCTAATTGATCAGCAGCAGCAGAAAATCATTGCCCTGCAGAGCGGTTTACAAGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS-3UTR CAA 90 bp | TTTGAGAAGCTAAGCTTGGTTCAAAGCTTTAGGATACACTTGAAATCCGTGTCTATTCCCCGCCTGGACTaGTACACTTGGTACATGTGG | + |
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Preference number: 5 (lower is better) Translates to: FEKLSLVQSFRIHLKSVSIPRLD*YTWYMW Trigger: CCACATGTACCAAGTGTACAAGTCCAGGCGGGGAAT...AGACACGGATTTCAAGTGTATCCTAAAGCTTTGAACCAAGCTTAGCTTCTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS-3UTR CAA 90 bp | AGTGTAGCAATTGATTACTTAGCTCTGTGTACTTTGGGACGTTTGGGGGCATCTCCCAAAGTAGTAAGTTaGAGATGTTCGGGTAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: SVAIDYLALCTLGRLGASPKVVS*RCSGRR Trigger: TCTCCTACCCGAACATCTCAAACTTACTACTTTGGG...AGATGCCCCCAAACGTCCCAAAGTACACAGAGCTAAGTAATCAATTGCTACACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 90 bp | TTCTTCCCGACAAATCACCAGCTTGTAAACCGCTCTGCAGGGCAATaGTTTTCTGCTGCTGCTGATCAATTAGATTTGTCAATGCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: FFPTNHQLVNRSAGQ*FSAAADQLDLSMLS Trigger: TGAAAGCATTGACAAATCTAATTGATCAGCAGCAGCAGAAAATCATTGCCCTGCAGAGCGGTTTACAAGCTGGTGATTTGTCGGGAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS GCA 90 bp | ATTTGTCAATGCTTTCACGTGCTTCAACGTAAGCTCCAGAACCACTaGTTTTTCCAAGTGACCCAAAGTAGTAAGTTTGAGATGTTCGGG | + |
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Preference number: 5 (lower is better) Translates to: ICQCFHVLQRKLQNH*FFQVTQSSKFEMFG Trigger: CCCGAACATCTCAAACTTACTACTTTGGGTCACTTGGAAAAAGCAGTGGTTCTGGAGCTTACGTTGAAGCACGTGAAAGCATTGACAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS-3UTR CAA 90 bp | TTTTATGCCCAAATAAAAATGGGAGAATTTCAACACAAGCAGAGTGCATTTGGAGCTGATCAATTAGATTaGTCAATGCTTTCACGTGCT | + |
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Preference number: 5 (lower is better) Translates to: FYAQIKMGEFQHKQSAFGADQLD*SMLSRA Trigger: AGCACGTGAAAGCATTGACAAATCTAATTGATCAGC...TCCAAATGCACTCTGCTTGTGTTGAAATTCTCCCATTTTTATTTGGGCATAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CAA 90 bp | GCAAAATCCATCCCTGACAGGTCTCCGTGCTCCAGCCCTGGAGCTTaGGGCAGGCAGGTAGGAGGTGGTTGCGCGCTGGGGATCCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AKSIPDRSPCSSPGA*GRQVGGGCALGIRS Trigger: GGAACGGATCCCCAGCGCGCAACCACCTCCTACCTGCCTGCCCAAAGCTCCAGGGCTGGAGCACGGAGACCTGTCAGGGATGGATTTTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS CCA 72 bp | AGTCCACGGCTTTGGGAGCCGAGTCCAATGGTTTCCTaGAAGCACCACCCTGCAGCAGCTCCGAGACCACAC | + |
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Preference number: 6 (lower is better) Translates to: SPRLWEPSPMVS*KHHPAAAPRPH Trigger: GTGTGGTCTCGGAGCTGCTGCAGGGTGGTGCTTCCAGGAAACCATTGGACTCGGCTCCCAAAGCCGTGGACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CAA 72 bp | CGTTCTCCCACGGCGAACCTGCGTCCATGGTCGCTTTaGAAGTACGGCTGCTCACTGCGCAAGTCCCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: RSPTANLRPWSL*KYGCSLRKSPF Trigger: GAAGGGGGACTTGCGCAGTGAGCAGCCGTACTTCAAAAGCGACCATGGACGCAGGTTCGCCGTGGGAGAACG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CAA 90 bp | GTGCTGACACGTTCTCCCACGGCGAACCTGCGTCCATGGTCGCTTTaGAAGTACGGCTGCTCACTGCGCAAGTCCCCCTTCTCCAATTCA | + |
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Preference number: 6 (lower is better) Translates to: VLTRSPTANLRPWSL*KYGCSLRKSPFSNS Trigger: TGAATTGGAGAAGGGGGACTTGCGCAGTGAGCAGCCGTACTTCAAAAGCGACCATGGACGCAGGTTCGCCGTGGGAGAACGTGTCAGCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS GCA 72 bp | TACATGTGGGCAAAATCCATCCCTGACAGGTCTCCGTaGTCCAGCCCTGGAGCTTTGGGCAGGCAGGTAGGA | + |
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Preference number: 6 (lower is better) Translates to: YMWAKSIPDRSP*SSPGALGRQVG Trigger: TCCTACCTGCCTGCCCAAAGCTCCAGGGCTGGAGCACGGAGACCTGTCAGGGATGGATTTTGCCCACATGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS GCA 72 bp | GGTGTGGCCCAAGAAATGGGGAACCCATCAGATCACTaGCCGCGAAGTGGCCTTCCTCTTCTGAGAGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GVAQEMGNPSDH*PRSGLPLLRAA Trigger: TGCAGCTCTCAGAAGAGGAAGGCCACTTCGCGGGCAGTGATCTGATGGGTTCCCCATTTCTTGGGCCACACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 72 bp | CCTGCAGCAGCTCCGAGACCACACGATGGAGATGAGTaGCGAGCTGGGAAGATTTCAGGTCCCGAGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PAAAPRPHDGDE*RAGKISGPECS Trigger: AGAACACTCGGGACCTGAAATCTTCCCAGCTCGTCACTCATCTCCATCGTGTGGTCTCGGAGCTGCTGCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS GCA 72 bp | GCGAACCTGCGTCCATGGTCGCTTTTGAAGTACGGCTaGTCACTGCGCAAGTCCCCCTTCTCCAATTCACCT | + |
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Preference number: 6 (lower is better) Translates to: ANLRPWSLLKYG*SLRKSPFSNSP Trigger: AGGTGAATTGGAGAAGGGGGACTTGCGCAGTGAGCAGCCGTACTTCAAAAGCGACCATGGACGCAGGTTCGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CAA 90 bp | ATCTTGTCTGGGTTCATGAAGCTGGAGAGGGCTGCAGCTGAGGTGTaGAGGCCTGGGTATAACACTGGCACAGAGGTGGGGTACCAGCAT | + |
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Preference number: 6 (lower is better) Translates to: ILSGFMKLERAAAEV*RPGYNTGTEVGYQH Trigger: ATGCTGGTACCCCACCTCTGTGCCAGTGTTATACCCAGGCCTCAACACCTCAGCTGCAGCCCTCTCCAGCTTCATGAACCCAGACAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 72 bp | CTAGGAAGCTGGGCTTCTCTTTCAAGTCCACGGCTTTaGGAGCCGAGTCCAATGGTTTCCTGGAAGCACCAC | + |
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Preference number: 6 (lower is better) Translates to: LGSWASLSSPRL*EPSPMVSWKHH Trigger: GTGGTGCTTCCAGGAAACCATTGGACTCGGCTCCCAAAGCCGTGGACTTGAAAGAGAAGCCCAGCTTCCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CAA 72 bp | GCTAGGAAGCTGGGCTTCTCTTTCAAGTCCACGGCTTaGGGAGCCGAGTCCAATGGTTTCCTGGAAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: ARKLGFSFKSTA*GAESNGFLEAP Trigger: TGGTGCTTCCAGGAAACCATTGGACTCGGCTCCCAAAGCCGTGGACTTGAAAGAGAAGCCCAGCTTCCTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 72 bp | TTCAGGTCCCGAGTGTTCTCATGCTTCGCCAGGTACTaGAGTACCTCACGGGCACAAGTCTGGAAACCTGAG | + |
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Preference number: 6 (lower is better) Translates to: FRSRVFSCFARY*STSRAQVWKPE Trigger: CTCAGGTTTCCAGACTTGTGCCCGTGAGGTACTTCAGTACCTGGCGAAGCATGAGAACACTCGGGACCTGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 72 bp | GCATTTCTCCAGCATAGGCAGGTAGGCAGTGGCCGATaGTGGGATGAGATAGAAGGGAAGGCAAAAAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: AFLQHRQVGSGR*WDEIEGKAKRR Trigger: CCTCCTTTTTGCCTTCCCTTCTATCTCATCCCACCATCGGCCACTGCCTACCTGCCTATGCTGGAGAAATGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 72 bp | TTTATTCCCCGCCTGGACTTGTACACTTGGTACATGTaGGCAAAATCCATCCCTGACAGGTCTCCGTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FIPRLDLYTWYM*AKSIPDRSPCS Trigger: GGAGCACGGAGACCTGTCAGGGATGGATTTTGCCCACATGTACCAAGTGTACAAGTCCAGGCGGGGAATAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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| CDS GCA 72 bp | CGGGCACAAGTCTGGAAACCTGAGCAGAACATTTCTTaGCCTGCCTCGAGATTTCTTCCCGACAAATCACCA | + |
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Preference number: 6 (lower is better) Translates to: RAQVWKPEQNIS*PASRFLPDKSP Trigger: TGGTGATTTGTCGGGAAGAAATCTCGAGGCAGGGCAAGAAATGTTCTGCTCAGGTTTCCAGACTTGTGCCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 72 bp | GTTTCTAAGTTTAAAGGAGGGATCTGCTTCAAAGCCTaGAGCAAGGCCGAAGAGTCGAGGGACGAATGTGCC | + |
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Preference number: 6 (lower is better) Translates to: VSKFKGGICFKA*SKAEESRDECA Trigger: GGCACATTCGTCCCTCGACTCTTCGGCCTTGCTCCAGGCTTTGAAGCAGATCCCTCCTTTAAACTTAGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS TCA 72 bp | GTACTGAAGTACCTCACGGGCACAAGTCTGGAAACCTaGGCAGAACATTTCTTGCCCTGCCTCGAGATTTCT | + |
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Preference number: 6 (lower is better) Translates to: VLKYLTGTSLET*AEHFLPCLEIS Trigger: AGAAATCTCGAGGCAGGGCAAGAAATGTTCTGCTCAGGTTTCCAGACTTGTGCCCGTGAGGTACTTCAGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032194.11 |
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| CDS CCA 72 bp | GTAAGTTTGAGATGTTCGGGTAGGAGATCCTTCAGCTaGGCAATGCACTCGTTAATCCGGTCACGTCTCTTT | + |
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Preference number: 6 (lower is better) Translates to: VSLRCSGRRSFS*AMHSLIRSRLF Trigger: AAAGAGACGTGACCGGATTAACGAGTGCATTGCCCAGCTGAAGGATCTCCTACCCGAACATCTCAAACTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032194.11 ENSMUST00000163617.2 |
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