RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BHLHE23 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000045493

Ensembl transcript IDs: ENSMUST00000108878.2

Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGGCTGGGTTCCCCATCCAACGCTAGGATGTGGTCAAGCGCGATaGTCTGTGCCTGCGCTCCTGAGCCTTGGGCAGTCACCTGTCAGA +
Preference number: 1 (lower is better)
Translates to: RGWVPHPTLGCGQAR*SVPALLSLGQSPVR
Trigger: TCTGACAGGTGACTGCCCAAGGCTCAGGAGCGCAGGCACAGAGCATCGCGCTTGACCACATCCTAGCGTTGGATGGGGAACCCAGCCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR GCA 90 bp TCCCCATCCAACGCTAGGATGTGGTCAAGCGCGATGCTCTGTGCCTaGGCTCCTGAGCCTTGGGCAGTCACCTGTCAGATGTGGGACCAT +
Preference number: 1 (lower is better)
Translates to: SPSNARMWSSAMLCA*APEPWAVTCQMWDH
Trigger: ATGGTCCCACATCTGACAGGTGACTGCCCAAGGCTCAGGAGCGCAGGCACAGAGCATCGCGCTTGACCACATCCTAGCGTTGGATGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CCA 90 bp AGGATGTGGTCAAGCGCGATGCTCTGTGCCTGCGCTCCTGAGCCTTaGGCAGTCACCTGTCAGATGTGGGACCATTCACTAACTGCTCAC +
Preference number: 1 (lower is better)
Translates to: RMWSSAMLCACAPEP*AVTCQMWDHSLTAH
Trigger: GTGAGCAGTTAGTGAATGGTCCCACATCTGACAGGTGACTGCCCAAGGCTCAGGAGCGCAGGCACAGAGCATCGCGCTTGACCACATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR TCA 90 bp ATCAATGAAAGCCAAGAAAACTGGGTAAATGGAGGCGGAAGCTGCTaGTGGCCACAGAGGAAAACCAGGCAACATCTGAGACGCGCGGGC +
Preference number: 1 (lower is better)
Translates to: INESQENWVNGGGSC*WPQRKTRQHLRRAG
Trigger: GCCCGCGCGTCTCAGATGTTGCCTGGTTTTCCTCTGTGGCCATCAGCAGCTTCCGCCTCCATTTACCCAGTTTTCTTGGCTTTCATTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR TCA 90 bp GGCGGTGGCGCTCCAGGCTTATTTAGAGATGTTTCCACAGACTTTTaGGGCTGGCTTGAATTTCCTGAGCCTCTGGGCAGGCAAGAATGT +
Preference number: 1 (lower is better)
Translates to: GGGAPGLFRDVSTDF*GWLEFPEPLGRQEC
Trigger: ACATTCTTGCCTGCCCAGAGGCTCAGGAAATTCAAGCCAGCCTCAAAAGTCTGTGGAAACATCTCTAAATAAGCCTGGAGCGCCACCGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CCA 90 bp AACAGAACAAGCTCAGACTTGGAAAACGTTGTAAAGCTCACCTCCTaGGATCTTCCTGCGTCTGCCTCCACGACCTCTCCAAAGGACCTC +
Preference number: 1 (lower is better)
Translates to: NRTSSDLENVVKLTS*DLPASASTTSPKDL
Trigger: GAGGTCCTTTGGAGAGGTCGTGGAGGCAGACGCAGGAAGATCCCAGGAGGTGAGCTTTACAACGTTTTCCAAGTCTGAGCTTGTTCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR GCA 90 bp AGTCCAGCGCCAACTCTCTGGCTTTCTCAGACGGACTTCTCATTCTaGACCCAACAGTTCTGTAAGCGGAGTACTGGGCTTTCTCATAGA +
Preference number: 1 (lower is better)
Translates to: SPAPTLWLSQTDFSF*TQQFCKRSTGLSHR
Trigger: TCTATGAGAAAGCCCAGTACTCCGCTTACAGAACTGTTGGGTGCAGAATGAGAAGTCCGTCTGAGAAAGCCAGAGAGTTGGCGCTGGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR GCA 90 bp ATAGACAGGCGCTTTGCTGAGCAGTGGCCCTCTCCCGATTTGCTTTaGATCAATGAAAGCCAAGAAAACTGGGTAAATGGAGGCGGAAGC +
Preference number: 1 (lower is better)
Translates to: IDRRFAEQWPSPDLL*INESQENWVNGGGS
Trigger: GCTTCCGCCTCCATTTACCCAGTTTTCTTGGCTTTCATTGATGCAAAGCAAATCGGGAGAGGGCCACTGCTCAGCAAAGCGCCTGTCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR TCA 90 bp GGGAGCGACCAGTTCCCATTCAGTCCAACACCTCACCGGGTACTCACCGGTAGCAACAGAGGCCCGAGGTaGGGGGCCGCACCCGTCCTG +
Preference number: 2 (lower is better)
Translates to: GSDQFPFSPTPHRVLTGSNRGPR*GAAPVL
Trigger: CAGGACGGGTGCGGCCCCTCACCTCGGGCCTCTGTT...GCTACCGGTGAGTACCCGGTGAGGTGTTGGACTGAATGGGAACTGGTCGCTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR TCA 90 bp TGGTCTCAGAATCCCCATGCCCCTGTCTCTGCCTCCTGCAGGTTGGGATCACCCCTGTGCCTGCGCTCCTaGGCCTTGGGCAGTCACCTG +
Preference number: 2 (lower is better)
Translates to: WSQNPHAPVSASCRLGSPLCLRS*ALGSHL
Trigger: CAGGTGACTGCCCAAGGCTCAGGAGCGCAGGCACAG...GGGTGATCCCAACCTGCAGGAGGCAGAGACAGGGGCATGGGGATTCTGAGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR CCA 90 bp GACTCTTCGGCTGACCCTCCAGGGTCAAGTAGCCCTGAGCAGGTTGTGAGGGCTTGCGCTCCTGAGCCTTaGGCAGTCACCTGTCAGATG +
Preference number: 2 (lower is better)
Translates to: DSSADPPGSSSPEQVVRACAPEP*AVTCQM
Trigger: CATCTGACAGGTGACTGCCCAAGGCTCAGGAGCGCA...AGCCCTCACAACCTGCTCAGGGCTACTTGACCCTGGAGGGTCAGCCGAAGAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR TCA 90 bp GTCCGATTTGGGGAGCGACCAGTTCCCATTCAGTCCAACACCTCACCGGGTACTAGGAACAGGTCTAGTTaGAGCAAGCAAGGCCCTGCA +
Preference number: 2 (lower is better)
Translates to: VRFGERPVPIQSNTSPGTRNRSS*SKQGPA
Trigger: TGCAGGGCCTTGCTTGCTTCAACTAGACCTGTTCCT...AGTACCCGGTGAGGTGTTGGACTGAATGGGAACTGGTCGCTCCCCAAATCGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR CCA 90 bp GGTCTCAGAATCCCCATGCCCCTGTCTCTGCCTCCTGCAGGTTGGGATCACCCCAATTTCCTGAGCCTCTaGGCAGGCAAGAATGTTAAC +
Preference number: 2 (lower is better)
Translates to: GLRIPMPLSLPPAGWDHPNFLSL*AGKNVN
Trigger: GTTAACATTCTTGCCTGCCCAGAGGCTCAGGAAATT...GGGGTGATCCCAACCTGCAGGAGGCAGAGACAGGGGCATGGGGATTCTGAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CAA 90 bp AGCGCTATAGACAGGCGCTTTGCTGAGCAGTGGCCCTCTCCCGATTaGCTTTGCATCAATGAAAGCCAAGAAAACTGGGTAAATGGAGGC +
Preference number: 2 (lower is better)
Translates to: SAIDRRFAEQWPSPD*LCINESQENWVNGG
Trigger: GCCTCCATTTACCCAGTTTTCTTGGCTTTCATTGATGCAAAGCAAATCGGGAGAGGGCCACTGCTCAGCAAAGCGCCTGTCTATAGCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR CCA 90 bp TTGCTTTGCATCAATGAAAGCCAAGAAAACTGGGTAAATGGAGGCGGAAGCTGCGTAAAGCTCACCTCCTaGGATCTTCCTGCGTCTGCC +
Preference number: 2 (lower is better)
Translates to: LLCINESQENWVNGGGSCVKLTS*DLPASA
Trigger: GGCAGACGCAGGAAGATCCCAGGAGGTGAGCTTTAC...GCAGCTTCCGCCTCCATTTACCCAGTTTTCTTGGCTTTCATTGATGCAAAGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR GCA 90 bp ACACATTTTTCGTATGAACTCACACATCTCTTAATGGAGTATGGATCCATTGTAGCGATGCTCTGTGCCTaGGCTCCTGAGCCTTGGGCA +
Preference number: 2 (lower is better)
Translates to: THFSYELTHLLMEYGSIVAMLCA*APEPWA
Trigger: TGCCCAAGGCTCAGGAGCGCAGGCACAGAGCATCGC...TACAATGGATCCATACTCCATTAAGAGATGTGTGAGTTCATACGAAAAATGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR TCA 90 bp ACACATTTTTCGTATGAACTCACACATCTCTTAATGGAGTATGGATCCATTGTAGTTTCCACAGACTTTTaGGGCTGGCTTGAATTTCCT +
Preference number: 2 (lower is better)
Translates to: THFSYELTHLLMEYGSIVVSTDF*GWLEFP
Trigger: AGGAAATTCAAGCCAGCCTCAAAAGTCTGTGGAAAC...TACAATGGATCCATACTCCATTAAGAGATGTGTGAGTTCATACGAAAAATGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR GCA 90 bp TCGTATGAACTCACACATCTCTTAATGGAGTATGGATCCATTGTAAAATCTCAGTCACACACGTCATTTTaGAAATACAAAAGGGCCTTT +
Preference number: 2 (lower is better)
Translates to: SYELTHLLMEYGSIVKSQSHTSF*KYKRAF
Trigger: AAAGGCCCTTTTGTATTTGCAAAATGACGTGTGTGA...CTGAGATTTTACAATGGATCCATACTCCATTAAGAGATGTGTGAGTTCATACGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR TCA 72 bp CCAACAGAGGCCCGAGGTGAGGGGCCGCACCCGTCCTaGGGAACAGGTCTAGTTGAAGCAAGCAAGGCCCTG +
Preference number: 3 (lower is better)
Translates to: PTEARGEGPHPS*GTGLVEASKAL
Trigger: CAGGGCCTTGCTTGCTTCAACTAGACCTGTTCCTCAGGACGGGTGCGGCCCCTCACCTCGGGCCTCTGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR-3UTR CAA 90 bp TGGTCTCAGAATCCCCATGCCCCTGTCTCTGCCTCCTGCAGGTTGGGATCACCCGCCGGGTCTGGAGTCTaGGAGCCAACAGAGGCCCGA +
Preference number: 3 (lower is better)
Translates to: WSQNPHAPVSASCRLGSPAGSGV*EPTEAR
Trigger: TCGGGCCTCTGTTGGCTCCAAGACTCCAGACCCGGC...GGGTGATCCCAACCTGCAGGAGGCAGAGACAGGGGCATGGGGATTCTGAGACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR GCA 72 bp AACGCTAGGATGTGGTCAAGCGCGATGCTCTGTGCCTaGGCTCCTGAGCCTTGGGCAGTCACCTGTCAGATG +
Preference number: 3 (lower is better)
Translates to: NARMWSSAMLCA*APEPWAVTCQM
Trigger: CATCTGACAGGTGACTGCCCAAGGCTCAGGAGCGCAGGCACAGAGCATCGCGCTTGACCACATCCTAGCGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CCA 72 bp TCAAGCGCGATGCTCTGTGCCTGCGCTCCTGAGCCTTaGGCAGTCACCTGTCAGATGTGGGACCATTCACTA +
Preference number: 3 (lower is better)
Translates to: SSAMLCACAPEP*AVTCQMWDHSL
Trigger: TAGTGAATGGTCCCACATCTGACAGGTGACTGCCCAAGGCTCAGGAGCGCAGGCACAGAGCATCGCGCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CCA 72 bp AGGTACAGTGGCAGGATTCTGGGCTGTGGTCCGATTTaGGGAGCGACCAGTTCCCATTCAGTCCAACACCTC +
Preference number: 3 (lower is better)
Translates to: RYSGRILGCGPI*GATSSHSVQHL
Trigger: GAGGTGTTGGACTGAATGGGAACTGGTCGCTCCCCAAATCGGACCACAGCCCAGAATCCTGCCACTGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CCA 72 bp AGCTCAGACTTGGAAAACGTTGTAAAGCTCACCTCCTaGGATCTTCCTGCGTCTGCCTCCACGACCTCTCCA +
Preference number: 3 (lower is better)
Translates to: SSDLENVVKLTS*DLPASASTTSP
Trigger: TGGAGAGGTCGTGGAGGCAGACGCAGGAAGATCCCAGGAGGTGAGCTTTACAACGTTTTCCAAGTCTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR GCA 72 bp CGCTTTGCTGAGCAGTGGCCCTCTCCCGATTTGCTTTaGATCAATGAAAGCCAAGAAAACTGGGTAAATGGA +
Preference number: 3 (lower is better)
Translates to: RFAEQWPSPDLL*INESQENWVNG
Trigger: TCCATTTACCCAGTTTTCTTGGCTTTCATTGATGCAAAGCAAATCGGGAGAGGGCCACTGCTCAGCAAAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CCA 72 bp CAGACTTTTGAGGCTGGCTTGAATTTCCTGAGCCTCTaGGCAGGCAAGAATGTTAACAGAACAAGCTCAGAC +
Preference number: 3 (lower is better)
Translates to: QTFEAGLNFLSL*AGKNVNRTSSD
Trigger: GTCTGAGCTTGTTCTGTTAACATTCTTGCCTGCCCAGAGGCTCAGGAAATTCAAGCCAGCCTCAAAAGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR TCA 72 bp TTAATTCAAGTTAAGCGCTATAGACAGGCGCTTTGCTaGGCAGTGGCCCTCTCCCGATTTGCTTTGCATCAA +
Preference number: 3 (lower is better)
Translates to: LIQVKRYRQALC*AVALSRFALHQ
Trigger: TTGATGCAAAGCAAATCGGGAGAGGGCCACTGCTCAGCAAAGCGCCTGTCTATAGCGCTTAACTTGAATTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR TCA 72 bp TGTGTCTCCACCCAACACTCCTACACATTTTTCGTATaGACTCACACATCTCTTAATGGAGTATGGATCCAT +
Preference number: 3 (lower is better)
Translates to: CVSTQHSYTFFV*THTSLNGVWIH
Trigger: ATGGATCCATACTCCATTAAGAGATGTGTGAGTTCATACGAAAAATGTGTAGGAGTGTTGGGTGGAGACACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS-3UTR CCA 90 bp CAGGCTGGTCTCAGAATCCCCATGCCCCTGTCTCTGCCTCCTGCAGGTTGGGATGCGAGGCCCTGGCCTTaGTTGAGGTATGCTACCAAG +
Preference number: 4 (lower is better)
Translates to: QAGLRIPMPLSLPPAGWDARPWP*LRYATK
Trigger: CTTGGTAGCATACCTCAACCAAGGCCAGGGCCTCGC...ATCCCAACCTGCAGGAGGCAGAGACAGGGGCATGGGGATTCTGAGACCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CAA 72 bp AGCCCTGAGCAGGTTGTGAGGGCTCCACCAGTCCCCTaGGGACAAGTAGAAAGAAGTGAAACCCAGCTCAGC +
Preference number: 4 (lower is better)
Translates to: SPEQVVRAPPVP*GQVERSETQLS
Trigger: GCTGAGCTGGGTTTCACTTCTTTCTACTTGTCCCAAGGGGACTGGTGGAGCCCTCACAACCTGCTCAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS-3UTR GCA 90 bp CTCCAGGCTTATTTAGAGATGTTTCCACAGACTTTTGAGGCTGGCTTGAATTTCTCCTCGTCGCCGCTCTaGTCGCCGCTGCTCTCCACC +
Preference number: 4 (lower is better)
Translates to: LQAYLEMFPQTFEAGLNFSSSPL*SPLLST
Trigger: GGTGGAGAGCAGCGGCGAGCAGAGCGGCGACGAGGA...GAAATTCAAGCCAGCCTCAAAAGTCTGTGGAAACATCTCTAAATAAGCCTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
3UTR CAA 72 bp GACAGGCGCTTTGCTGAGCAGTGGCCCTCTCCCGATTaGCTTTGCATCAATGAAAGCCAAGAAAACTGGGTA +
Preference number: 4 (lower is better)
Translates to: DRRFAEQWPSPD*LCINESQENWV
Trigger: TACCCAGTTTTCTTGGCTTTCATTGATGCAAAGCAAATCGGGAGAGGGCCACTGCTCAGCAAAGCGCCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS-3UTR GCA 90 bp ACACATTTTTCGTATGAACTCACACATCTCTTAATGGAGTATGGATCCATTGTAGCCTTGGTTGAGGTATaGTACCAAGCGCCGCATCTC +
Preference number: 4 (lower is better)
Translates to: THFSYELTHLLMEYGSIVALVEV*YQAPHL
Trigger: GAGATGCGGCGCTTGGTAGCATACCTCAACCAAGGC...TACAATGGATCCATACTCCATTAAGAGATGTGTGAGTTCATACGAAAAATGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS CCA 90 bp CCGCCGGGAGGTCGCCACCCGGACCCGATGCACCGAAGCCGCGTGTaGTCTCCGGTCCGCGCGCTGCAGCGTAGGCGTGGCCGGTCGCCG +
Preference number: 5 (lower is better)
Translates to: PPGGRHPDPMHRSRV*SPVRALQRRRGRSP
Trigger: CGGCGACCGGCCACGCCTACGCTGCAGCGCGCGGACCGGAGACCACACGCGGCTTCGGTGCATCGGGTCCGGGTGGCGACCTCCCGGCGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 90 bp CGCCGCCGCCGCCGCCTCTCGAAGGCTTCGTCCTCGTCGCCGCTCTaGTCGCCGCTGCTCTCCACCGTCGCGGCGGGGACACGAGAAGCG +
Preference number: 5 (lower is better)
Translates to: RRRRRLSKASSSSPL*SPLLSTVAAGTREA
Trigger: CGCTTCTCGTGTCCCCGCCGCGACGGTGGAGAGCAGCGGCGAGCAGAGCGGCGACGAGGACGAAGCCTTCGAGAGGCGGCGGCGGCGGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 90 bp GACACGAGAAGCGGGAGCCGCCGGGAGGTCGCCACCCGGACCCGATaGACCGAAGCCGCGTGTGGTCTCCGGTCCGCGCGCTGCAGCGTA +
Preference number: 5 (lower is better)
Translates to: DTRSGSRREVATRTR*TEAACGLRSARCSV
Trigger: TACGCTGCAGCGCGCGGACCGGAGACCACACGCGGCTTCGGTGCATCGGGTCCGGGTGGCGACCTCCCGGCGGCTCCCGCTTCTCGTGTC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 90 bp ATGCGTCGCCGTTCGCGCGCGTTGATGCTGAGCCTCAGCGAGCGCTaGTCCCGGGGCCGCCGCCGTGCGTCAACCGCAACCCCGGACCCT +
Preference number: 5 (lower is better)
Translates to: MRRRSRALMLSLSER*SRGRRRASTATPDP
Trigger: AGGGTCCGGGGTTGCGGTTGACGCACGGCGGCGGCCCCGGGAGCAGCGCTCGCTGAGGCTCAGCATCAACGCGCGCGAACGGCGACGCAT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS CCA 90 bp TCTCGCCGCAGTGTTTGCAAAGCGCCGAGGGCGATCCTGAGAAGGTaGCACACTTGTCTGGGCAGGGCCCGAGCGCGGTGCCCGCCGAGA +
Preference number: 5 (lower is better)
Translates to: SRRSVCKAPRAILRR*HTCLGRARARCPPR
Trigger: TCTCGGCGGGCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTCAGGATCGCCCTCGGCGCTTTGCAAACACTGCGGCGAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS TCA 90 bp TCAGGGCTTCTCGCCGCAGTGTTTGCAAAGCGCCGAGGGCGATCCTaGGAAGGTGGCACACTTGTCTGGGCAGGGCCCGAGCGCGGTGCC +
Preference number: 5 (lower is better)
Translates to: SGLLAAVFAKRRGRS*EGGTLVWAGPERGA
Trigger: GGCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTCAGGATCGCCCTCGGCGCTTTGCAAACACTGCGGCGAGAAGCCCTGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 90 bp ATCCTGAGAAGGTGGCACACTTGTCTGGGCAGGGCCCGAGCGCGGTaGCCGCCGAGAACGGGTAAATCGCTGCCTGGCCAAAGGGCGTTA +
Preference number: 5 (lower is better)
Translates to: ILRRWHTCLGRARAR*PPRTGKSLPGQRAL
Trigger: TAACGCCCTTTGGCCAGGCAGCGATTTACCCGTTCTCGGCGGGCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTCAGGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS-3UTR CAA 90 bp CTTCCTCCAGAAGTTCCCGAACTGGCGCAGAGGGGACTTGGTTGGTCCTGGAGCAGGCCCTGGCCTTGGTaGAGGTATGCTACCAAGCGC +
Preference number: 5 (lower is better)
Translates to: LPPEVPELAQRGLGWSWSRPWPW*RYATKR
Trigger: GCGCTTGGTAGCATACCTCAACCAAGGCCAGGGCCT...GCTCCAGGACCAACCAAGTCCCCTCTGCGCCAGTTCGGGAACTTCTGGAGGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS-3UTR CAA 90 bp AGGATTCTGGGCTGTGGTCCGATTTGGGGAGCGACCAGTTCCCATTCAGTCCAACGCGAGGCCCTGGCCTaGGTTGAGGTATGCTACCAA +
Preference number: 5 (lower is better)
Translates to: RILGCGPIWGATSSHSVQREALA*VEVCYQ
Trigger: TTGGTAGCATACCTCAACCAAGGCCAGGGCCTCGCG...TTGGACTGAATGGGAACTGGTCGCTCCCCAAATCGGACCACAGCCCAGAATCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS-3UTR CAA 90 bp CTCCAGGCTTATTTAGAGATGTTTCCACAGACTTTTGAGGCTGGCTTGAATTTCGAGAAGGTGGCACACTaGTCTGGGCAGGGCCCGAGC +
Preference number: 5 (lower is better)
Translates to: LQAYLEMFPQTFEAGLNFEKVAH*SGQGPS
Trigger: GCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTC...GAAATTCAAGCCAGCCTCAAAAGTCTGTGGAAACATCTCTAAATAAGCCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 72 bp AGCGGGAGCCGCCGGGAGGTCGCCACCCGGACCCGATaGACCGAAGCCGCGTGTGGTCTCCGGTCCGCGCGC +
Preference number: 6 (lower is better)
Translates to: SGSRREVATRTR*TEAACGLRSAR
Trigger: GCGCGCGGACCGGAGACCACACGCGGCTTCGGTGCATCGGGTCCGGGTGGCGACCTCCCGGCGGCTCCCGCT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 72 bp CGCCGCCTCTCGAAGGCTTCGTCCTCGTCGCCGCTCTaGTCGCCGCTGCTCTCCACCGTCGCGGCGGGGACA +
Preference number: 6 (lower is better)
Translates to: RRLSKASSSSPL*SPLLSTVAAGT
Trigger: TGTCCCCGCCGCGACGGTGGAGAGCAGCGGCGAGCAGAGCGGCGACGAGGACGAAGCCTTCGAGAGGCGGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 72 bp CGTTCGCGCGCGTTGATGCTGAGCCTCAGCGAGCGCTaGTCCCGGGGCCGCCGCCGTGCGTCAACCGCAACC +
Preference number: 6 (lower is better)
Translates to: RSRALMLSLSER*SRGRRRASTAT
Trigger: GGTTGCGGTTGACGCACGGCGGCGGCCCCGGGAGCAGCGCTCGCTGAGGCTCAGCATCAACGCGCGCGAACG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS CAA 72 bp CAAAGCGCCGAGGGCGATCCTGAGAAGGTGGCACACTaGTCTGGGCAGGGCCCGAGCGCGGTGCCCGCCGAG +
Preference number: 6 (lower is better)
Translates to: QSAEGDPEKVAH*SGQGPSAVPAE
Trigger: CTCGGCGGGCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTCAGGATCGCCCTCGGCGCTTTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS GCA 72 bp AGGTGGCACACTTGTCTGGGCAGGGCCCGAGCGCGGTaGCCGCCGAGAACGGGTAAATCGCTGCCTGGCCAA +
Preference number: 6 (lower is better)
Translates to: RWHTCLGRARAR*PPRTGKSLPGQ
Trigger: TTGGCCAGGCAGCGATTTACCCGTTCTCGGCGGGCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS CAA 72 bp TCGTTCAGGTCATGCATGCGTCGCCGTTCGCGCGCGTaGATGCTGAGCCTCAGCGAGCGCTGCTCCCGGGGC +
Preference number: 6 (lower is better)
Translates to: SFRSCMRRRSRA*MLSLSERCSRG
Trigger: GCCCCGGGAGCAGCGCTCGCTGAGGCTCAGCATCAACGCGCGCGAACGGCGACGCATGCATGACCTGAACGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2
CDS CCA 72 bp AGTGTTTGCAAAGCGCCGAGGGCGATCCTGAGAAGGTaGCACACTTGTCTGGGCAGGGCCCGAGCGCGGTGC +
Preference number: 6 (lower is better)
Translates to: SVCKAPRAILRR*HTCLGRARARC
Trigger: GCACCGCGCTCGGGCCCTGCCCAGACAAGTGTGCCACCTTCTCAGGATCGCCCTCGGCGCTTTGCAAACACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108878.2