Pregenerated sensors for BHLHE22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025128Ensembl transcript IDs: ENSMUST00000026120.8
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCCCTCCCCACCCCAAAGACCGAGATTCCGGGCTTGCCAAGGCTaGATGTCCGGTTTGTCTCTGATACTTCTAAGTTCCTGCCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: PPSPPQRPRFRACQG*MSGLSLILLSSCLC Trigger: GCAGAGGCAGGAACTTAGAAGTATCAGAGACAAACCGGACATTCAGCCTTGGCAAGCCCGGAATCTCGGTCTTTGGGGTGGGGAGGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR CCA 90 bp | CCTGCAAGTGTTTCACAACTTAGGAGAGGACCAAAGGAAAAGGAATaGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCG | + |
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Preference number: 1 (lower is better) Translates to: PASVSQLRRGPKEKE*GAASHFPLALGSVS Trigger: CGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTTTCCTTTGGTCCTCTCCTAAGTTGTGAAACACTTGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR GCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTGGGAGCCACCAAAGTTaGCACTTTTCTGAGGGGAAA | + |
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Preference number: 2 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIGSHQS*HFSEGK Trigger: TTTCCCCTCAGAAAAGTGGCAACTTTGGTGGCTCCC...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR CCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTCCAAAGGAAAAGGAATaGGGAGCAGCTTCTCACTTT | + |
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Preference number: 2 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIPKEKE*GAASHF Trigger: AAAGTGAGAAGCTGCTCCCCATTCCTTTTCCTTTGG...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR GCA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTCTAAGTTCCTGCCTCTaGTTTGTTTGCCCTGCAAGT | + |
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Preference number: 2 (lower is better) Translates to: KTESSLWVNSFFLFRSFILSSCL*FVCPAS Trigger: ACTTGCAGGGCAAACAAAGCAGAGGCAGGAACTTAG...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR GCA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTTGCCTCTGCTTTGTTTaGCCTGCAAGTGTTTCACAA | + |
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Preference number: 2 (lower is better) Translates to: KTESSLWVNSFFLFRSFICLCFV*PASVSQ Trigger: TTGTGAAACACTTGCAGGGCAAACAAAGCAGAGGCA...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR TCA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCATCTGATTTGTCTGAATaGATATTCTGTCCCCGAGCC | + |
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Preference number: 2 (lower is better) Translates to: FFTHPKPTDRSIIALKSPSDLSE*IFCPRA Trigger: GGCTCGGGGACAGAATATTCATTCAGACAAATCAGA...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR TCA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTCTCTCACCAAAACTTTaGGCATTTTCACGGAATTTT | + |
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Preference number: 2 (lower is better) Translates to: KTESSLWVNSFFLFRSFILSPKL*AFSRNF Trigger: AAAATTCCGTGAAAATGCTCAAAGTTTTGGTGAGAG...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCACTCCCTTTCATCACTTaGCAATTGTCAGGTGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: FFTHPKPTDRSIIALKSPLPFIT*QLSGVS Trigger: ACTAACACCTGACAATTGGCAAGTGATGAAAGGGAG...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCAACTGAAAGCTCGCTTTaGGTAAATAGCTTCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: FFTHPKPTDRSIIALKSPTESSL*VNSFFL Trigger: GAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGT...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR-3UTR CAA 90 bp | GGGAAAAAGGAAGCACACTTCATCCGCACTAAACCTCCCTCTCCCCTCCCTCCCCACTTTCCTCTAGCTTaGGGGTCGGTCTCGAGGTTT | + |
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Preference number: 3 (lower is better) Translates to: GKKEAHFIRTKPPSPLPPHFPLA*GSVSRF Trigger: AAACCTCGAGACCGACCCCAAAGCTAGAGGAAAGTG...GGGAGGGAGGGGAGAGGGAGGTTTAGTGCGGATGAAGTGTGCTTCCTTTTTCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR TCA 72 bp | CCACCCCAAAGACCGAGATTCCGGGCTTGCCAAGGCTaGATGTCCGGTTTGTCTCTGATACTTCTAAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: PPQRPRFRACQG*MSGLSLILLSS Trigger: GGAACTTAGAAGTATCAGAGACAAACCGGACATTCAGCCTTGGCAAGCCCGGAATCTCGGTCTTTGGGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR TCA 72 bp | AACTTATTTTCGCCTCCAAAGAAGACTGTACTTCCTTaGGATCTAGGGAGCCACCAAAGTTGCCACTTTTCT | + |
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Preference number: 3 (lower is better) Translates to: NLFSPPKKTVLP*DLGSHQSCHFS Trigger: AGAAAAGTGGCAACTTTGGTGGCTCCCTAGATCTCAAGGAAGTACAGTCTTCTTTGGAGGCGAAAATAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR GCA 72 bp | CTTGCCAATTGTCAGGTGTTAGTAGGATTAGTATTTTaGCACTCAGTACTTTTCTCGTCTAATAATCAAGCA | + |
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Preference number: 3 (lower is better) Translates to: LANCQVLVGLVF*HSVLFSSNNQA Trigger: TGCTTGATTATTAGACGAGAAAAGTACTGAGTGGCAAAATACTAATCCTACTAACACCTGACAATTGGCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR TCA 90 bp | GGGAAAAAGGAAGCACACTTCATCCGCACTAAACCTCCCTCTCCCCTCCCTCCCGCGGCAGCCCTGCACTaGACGGGTAGCCGGCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: GKKEAHFIRTKPPSPLPPAAALH*TGSRPP Trigger: AGGCGGCCGGCTACCCGTTCAGTGCAGGGCTGCCGC...GGGAGGGAGGGGAGAGGGAGGTTTAGTGCGGATGAAGTGTGCTTCCTTTTTCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR TCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTCGCTCTCGCCGTACTTaGGGCACAGGGCAGCCCCCG | + |
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Preference number: 4 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIRSRRT*GTGQPP Trigger: CGGGGGCTGCCCTGTGCCTCAAGTACGGCGAGAGCG...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | GGGAAAAAGGAAGCACACTTCATCCGCACTAAACCTCCCTCTCCCCTCCCTCCCGCTTGGCGGCGGAGGTaGCCAGGCTCTTGTGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: GKKEAHFIRTKPPSPLPPAWRRR*PGSCAG Trigger: TCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGC...GGGAGGGAGGGGAGAGGGAGGTTTAGTGCGGATGAAGTGTGCTTCCTTTTTCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGTCGTCGTCGGGGCTCTaGTCGCCCCCGCTGCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: KGMGSSFSLSSSFGVGLESSSGL*SPPLLS Trigger: CGAGAGCAGCGGGGGCGAGCAGAGCCCCGACGACGA...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTAGCGGGCGGCAGCCCTaGACTGAACGGGTAGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: LSPSLSTLNPSPFHHLPISGRQP*TERVAG Trigger: GCCGGCTACCCGTTCAGTGCAGGGCTGCCGCCCGCT...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTCCGCGGCCGCGGAGCTaGGAAGAGAGGCTGCCGAGA | + |
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Preference number: 4 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIPRPRS*EERLPR Trigger: TCTCGGCAGCCTCTCTTCCCAGCTCCGCGGCCGCGG...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGTGGATTTCTTGCTGCTaGCGCCGCCACCGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KGMGSSFSLSSSFGVGLEWISCC*RRHRRR Trigger: GCGGCGGCGGTGGCGGCGGCAGCAGCAAGAAATCCA...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CCA 90 bp | GGGAAAAAGGAAGCACACTTCATCCGCACTAAACCTCCCTCTCCCCTCCCTCCCCATGCAAGTGGGCGTTaGAGCAGCCCTCGGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: GKKEAHFIRTKPPSPLPPHASGR*SSPRPP Trigger: AGGTGGCCGAGGGCTGCTCCAACGCCCACTTGCATG...GGGAGGGAGGGGAGAGGGAGGTTTAGTGCGGATGAAGTGTGCTTCCTTTTTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTCCAGGGACAGGTCCATaGCCGGGGGTGTGGAGCGAA | + |
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Preference number: 4 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIPGTGP*PGVWSE Trigger: TTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGG...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGGCGTCGTTCAGGTCGTaGATCCTCCGGCGCTCGCGA | + |
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Preference number: 4 (lower is better) Translates to: KGMGSSFSLSSSFGVGLEASFRS*ILRRSR Trigger: TCGCGAGCGCCGGAGGATGCACGACCTGAACGACGC...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGCTTTGGATTTCTTGCTaGTGCCGCCGCCACCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KGMGSSFSLSSSFGVGLELWISC*CRRHRR Trigger: GCGGCGGTGGCGGCGGCAGCAGCAAGAAATCCAAAG...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR TCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTTGTGCGCGTAAGGAATaGCCGCGCGCAGCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: LSPSLSTLNPSPFHHLPICARKE*PRAAHP Trigger: TGGATGAGCTGCGCGCGGTCATTCCTTACGCGCACA...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGGTGCCCAGGCTCTTGTaGAGGAAGAGGTCGTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: KGMGSSFSLSSSFGVGLEVPRLL*RKRSSS Trigger: CGAAGACGACCTCTTCCTGCACAAGAGCCTGGGCAC...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGTCTCCGTGCACTGTTTaGAGAGGCTGGACGAGACGC | + |
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Preference number: 4 (lower is better) Translates to: KGMGSSFSLSSSFGVGLESPCTV*RGWTRR Trigger: GCGTCTCGTCCAGCCTCTGCAAACAGTGCACGGAGA...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTAGGCGCAACGCCTTCTaGTCTTTGGATTTCTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIRRNAF*SLDFLL Trigger: CAGCAAGAAATCCAAAGAGCAGAAGGCGTTGCGCCT...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CCA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTCGGGCGTTCGCGAGTTaGAGGCGCCAGGGACAGGTC | + |
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Preference number: 4 (lower is better) Translates to: KTESSLWVNSFFLFRSFIRAFAS*RRQGQV Trigger: GACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCG...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CCA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTCCATGCCCGGGGGTGTaGAGCGAAAAGCCGCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: KTESSLWVNSFFLFRSFIPCPGV*SEKPPP Trigger: TGGAGGCGGCTTTTCGCTCCACACCCCCGGGCATGG...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR TCA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCATGGCCTGGCCTTGGTTaGGGTAGGCGACTAAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: FFTHPKPTDRSIIALKSPWPGLG*GRRLSA Trigger: GGCGCTTAGTCGCCTACCTCAACCAAGGCCAGGCCA...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR TCA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTTGGACGAGACGCTGTTaGATAGGGCACACTTCTCGG | + |
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Preference number: 4 (lower is better) Translates to: KTESSLWVNSFFLFRSFIWTRRC*IGHTSR Trigger: CCGAGAAGTGTGCCCTATTCAACAGCGTCTCGTCCA...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR GCA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCAGCTCTTTGGATTTCTTaGTGCTGCCGCCGCCACCGC | + |
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Preference number: 4 (lower is better) Translates to: FFTHPKPTDRSIIALKSPALWIS*CCRRHR Trigger: GCGGTGGCGGCGGCAGCAGCAAGAAATCCAAAGAGC...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| 3UTR CAA 72 bp | CAACTTATTTTCGCCTCCAAAGAAGACTGTACTTCCTaGAGATCTAGGGAGCCACCAAAGTTGCCACTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QLIFASKEDCTS*RSREPPKLPLF Trigger: GAAAAGTGGCAACTTTGGTGGCTCCCTAGATCTCAAGGAAGTACAGTCTTCTTTGGAGGCGAAAATAAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CCA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCAACGCCTTCTGCTCTTTaGATTTCTTGCTGCTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FFTHPKPTDRSIIALKSPTPSAL*ISCCCR Trigger: GCGGCAGCAGCAAGAAATCCAAAGAGCAGAAGGCGT...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 90 bp | CGCAGCACCAGCTCGCAGCGGCCGTCGCTGTCGTCGTCGGGGCTCTaGTCGCCCCCGCTGCTCTCGGCCACGGAGCCGCGTCCGGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: RSTSSQRPSLSSSGL*SPPLLSATEPRPAL Trigger: GAGCGCCGGACGCGGCTCCGTGGCCGAGAGCAGCGGGGGCGAGCAGAGCCCCGACGACGACAGCGACGGCCGCTGCGAGCTGGTGCTGCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS TCA 90 bp | GGGCACACTTCTCGGGGCAGGAGGCAGCGGGCGGCAGCCCTGCACTaGACGGGTAGCCGGCCGCCTGCTCGTAGGCGCCGAGCGCCGGGT | + |
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Preference number: 5 (lower is better) Translates to: GHTSRGRRQRAAALH*TGSRPPARRRRAPG Trigger: ACCCGGCGCTCGGCGCCTACGAGCAGGCGGCCGGCTACCCGTTCAGTGCAGGGCTGCCGCCCGCTGCCTCCTGCCCCGAGAAGTGTGCCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 90 bp | ACGACGCCGGGCGTTCGCGAGTTGGAGGCGCCAGGGACAGGTCCATaGCCGGGGGTGTGGAGCGAAAAGCCGCCTCCAGGCGCTTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: TTPGVRELEAPGTGP*PGVWSEKPPPGAWR Trigger: CCGCCAAGCGCCTGGAGGCGGCTTTTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCGGCGTCGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 90 bp | AAAGCCGCCTCCAGGCGCTTGGCGGCGGAGGTGCCCAGGCTCTTGTaGAGGAAGAGGTCGTCTTCGCTCGCGGCCGCCGCACCGAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: KAASRRLAAEVPRLL*RKRSSSLAAAAPRC Trigger: GCACCTCGGTGCGGCGGCCGCGAGCGAAGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CCA 90 bp | GTTCGCGAGTTGGAGGCGCCAGGGACAGGTCCATGCCCGGGGGTGTaGAGCGAAAAGCCGCCTCCAGGCGCTTGGCGGCGGAGGTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: VRELEAPGTGPCPGV*SEKPPPGAWRRRCP Trigger: TGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTTTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 90 bp | GGGGTGTGGAGCGAAAAGCCGCCTCCAGGCGCTTGGCGGCGGAGGTaGCCAGGCTCTTGTGCAGGAAGAGGTCGTCTTCGCTCGCGGCCG | + |
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Preference number: 5 (lower is better) Translates to: GVWSEKPPPGAWRRR*PGSCAGRGRLRSRP Trigger: CGGCCGCGAGCGAAGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTTTCGCTCCACACCCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CCA 90 bp | GAAACAGCCGAGGGGCGACGAGGACGACGCCGGGCGTTCGCGAGTTaGAGGCGCCAGGGACAGGTCCATGCCCGGGGGTGTGGAGCGAAA | + |
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Preference number: 5 (lower is better) Translates to: ETAEGRRGRRRAFAS*RRQGQVHARGCGAK Trigger: TTTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCGGCGTCGTCCTCGTCGCCCCTCGGCTGTTTC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CCA 90 bp | GGTCCATGCCCGGGGGTGTGGAGCGAAAAGCCGCCTCCAGGCGCTTaGCGGCGGAGGTGCCCAGGCTCTTGTGCAGGAAGAGGTCGTCTT | + |
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Preference number: 5 (lower is better) Translates to: GPCPGVWSEKPPPGA*RRRCPGSCAGRGRL Trigger: AAGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTTTCGCTCCACACCCCCGGGCATGGACC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS TCA 90 bp | AAGGCTTCTCCGTGCACTGTTTGCAGAGGCTGGACGAGACGCTGTTaGATAGGGCACACTTCTCGGGGCAGGAGGCAGCGGGCGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: KASPCTVCRGWTRRC*IGHTSRGRRQRAAA Trigger: GGCTGCCGCCCGCTGCCTCCTGCCCCGAGAAGTGTGCCCTATTCAACAGCGTCTCGTCCAGCCTCTGCAAACAGTGCACGGAGAAGCCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CAA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTCCATGCAAGTGGGCGTaGGAGCAGCCCTCGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: LSPSLSTLNPSPFHHLPIPCKWA*EQPSAT Trigger: GGTGGCCGAGGGCTGCTCCAACGCCCACTTGCATGG...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CAA 90 bp | AAAGGAATGGGGAGCAGCTTCTCACTTTCCTCTAGCTTTGGGGTCGGTCTCGAGTGCTCTTTGGATTTCTaGCTGCTGCCGCCGCCACCG | + |
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Preference number: 5 (lower is better) Translates to: KGMGSSFSLSSSFGVGLECSLDF*LLPPPP Trigger: CGGTGGCGGCGGCAGCAGCAAGAAATCCAAAGAGCA...CTCGAGACCGACCCCAAAGCTAGAGGAAAGTGAGAAGCTGCTCCCCATTCCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CAA 90 bp | CTGTCCCCGAGCCTCTCAACTCTGAACCCCTCTCCCTTTCATCACTTGCCAATTAACGCCTTCTGCTCTTaGGATTTCTTGCTGCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: LSPSLSTLNPSPFHHLPINAFCS*DFLLLP Trigger: CGGCAGCAGCAAGAAATCCAAAGAGCAGAAGGCGTT...AATTGGCAAGTGATGAAAGGGAGAGGGGTTCAGAGTTGAGAGGCTCGGGGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CAA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCACCGGGCGTTCGCGAGTaGGAGGCGCCAGGGACAGGT | + |
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Preference number: 5 (lower is better) Translates to: FFTHPKPTDRSIIALKSPPGVRE*EAPGTG Trigger: ACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCGG...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CAA 90 bp | AAAACTGAAAGCTCGCTTTGGGTAAATAGCTTCTTCCTCTTCCGTAGCTTCATTGAGGTGCCCAGGCTCTaGTGCAGGAAGAGGTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: KTESSLWVNSFFLFRSFIEVPRL*CRKRSS Trigger: AGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTC...AATGAAGCTACGGAAGAGGAAGAAGCTATTTACCCAAAGCGAGCTTTCAGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS-3UTR CAA 90 bp | TTCTTTACACATCCAAAACCAACTGATAGATCCATCATAGCTCTGAAATCACCATTCTCCGTGCACTGTTaGCAGAGGCTGGACGAGACG | + |
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Preference number: 5 (lower is better) Translates to: FFTHPKPTDRSIIALKSPFSVHC*QRLDET Trigger: CGTCTCGTCCAGCCTCTGCAAACAGTGCACGGAGAA...TGGTGATTTCAGAGCTATGATGGATCTATCAGTTGGTTTTGGATGTGTAAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 72 bp | CGTCGCTGTCGTCGTCGGGGCTCTGCTCGCCCCCGCTaGTCTCGGCCACGGAGCCGCGTCCGGCGCTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: RRCRRRGSARPR*SRPRSRVRRSR Trigger: GCGAGAGCGCCGGACGCGGCTCCGTGGCCGAGAGCAGCGGGGGCGAGCAGAGCCCCGACGACGACAGCGACG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 72 bp | AGCTCGCAGCGGCCGTCGCTGTCGTCGTCGGGGCTCTaGTCGCCCCCGCTGCTCTCGGCCACGGAGCCGCGT | + |
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Preference number: 6 (lower is better) Translates to: SSQRPSLSSSGL*SPPLLSATEPR Trigger: ACGCGGCTCCGTGGCCGAGAGCAGCGGGGGCGAGCAGAGCCCCGACGACGACAGCGACGGCCGCTGCGAGCT 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CAA 72 bp | CGAGGGGCGACGAGGACGACGCCGGGCGTTCGCGAGTaGGAGGCGCCAGGGACAGGTCCATGCCCGGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: RGATRTTPGVRE*EAPGTGPCPGV Trigger: CACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCGGCGTCGTCCTCGTCGCCCCTCG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CCA 72 bp | GAGGGGCGACGAGGACGACGCCGGGCGTTCGCGAGTTaGAGGCGCCAGGGACAGGTCCATGCCCGGGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: EGRRGRRRAFAS*RRQGQVHARGC Trigger: ACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCGGCGTCGTCCTCGTCGCCCCTC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CCA 72 bp | TTGGAGGCGCCAGGGACAGGTCCATGCCCGGGGGTGTaGAGCGAAAAGCCGCCTCCAGGCGCTTGGCGGCGG | + |
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Preference number: 6 (lower is better) Translates to: LEAPGTGPCPGV*SEKPPPGAWRR Trigger: CCGCCGCCAAGCGCCTGGAGGCGGCTTTTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CAA 90 bp | CGAAAAGCCGCCTCCAGGCGCTTGGCGGCGGAGGTGCCCAGGCTCTaGTGCAGGAAGAGGTCGTCTTCGCTCGCGGCCGCCGCACCGAGG | + |
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Preference number: 6 (lower is better) Translates to: RKAASRRLAAEVPRL*CRKRSSSLAAAAPR Trigger: CCTCGGTGCGGCGGCCGCGAGCGAAGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTTTCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CAA 90 bp | CGAAACAGCCGAGGGGCGACGAGGACGACGCCGGGCGTTCGCGAGTaGGAGGCGCCAGGGACAGGTCCATGCCCGGGGGTGTGGAGCGAA | + |
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Preference number: 6 (lower is better) Translates to: RNSRGATRTTPGVRE*EAPGTGPCPGVWSE Trigger: TTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAACGCCCGGCGTCGTCCTCGTCGCCCCTCGGCTGTTTCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 72 bp | TCCAGGCGCTTGGCGGCGGAGGTGCCCAGGCTCTTGTaGAGGAAGAGGTCGTCTTCGCTCGCGGCCGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: SRRLAAEVPRLL*RKRSSSLAAAA Trigger: TGCGGCGGCCGCGAGCGAAGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 72 bp | GGCGTTCGCGAGTTGGAGGCGCCAGGGACAGGTCCATaGCCGGGGGTGTGGAGCGAAAAGCCGCCTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: GVRELEAPGTGP*PGVWSEKPPPG Trigger: GCCTGGAGGCGGCTTTTCGCTCCACACCCCCGGGCATGGACCTGTCCCTGGCGCCTCCAACTCGCGAACGCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CCA 72 bp | CCGGGGGTGTGGAGCGAAAAGCCGCCTCCAGGCGCTTaGCGGCGGAGGTGCCCAGGCTCTTGTGCAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PGVWSEKPPPGA*RRRCPGSCAGR Trigger: TCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTTTCGCTCCACACCCCCGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CAA 90 bp | CGGCGCTCGCGAGCGTTGATGTTGAGGCGCAACGCCTTCTGCTCTTaGGATTTCTTGCTGCTGCCGCCGCCACCGCCGCCGCTTCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: RRSRALMLRRNAFCS*DFLLLPPPPPPLPP Trigger: CGGCGGAAGCGGCGGCGGTGGCGGCGGCAGCAGCAAGAAATCCAAAGAGCAGAAGGCGTTGCGCCTCAACATCAACGCTCGCGAGCGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS GCA 72 bp | AGCGAAAAGCCGCCTCCAGGCGCTTGGCGGCGGAGGTaGCCAGGCTCTTGTGCAGGAAGAGGTCGTCTTCGC | + |
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Preference number: 6 (lower is better) Translates to: SEKPPPGAWRRR*PGSCAGRGRLR Trigger: GCGAAGACGACCTCTTCCTGCACAAGAGCCTGGGCACCTCCGCCGCCAAGCGCCTGGAGGCGGCTTTTCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CAA 72 bp | ATGTTGAGGCGCAACGCCTTCTGCTCTTTGGATTTCTaGCTGCTGCCGCCGCCACCGCCGCCGCTTCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: MLRRNAFCSLDF*LLPPPPPPLPP Trigger: CGGCGGAAGCGGCGGCGGTGGCGGCGGCAGCAGCAAGAAATCCAAAGAGCAGAAGGCGTTGCGCCTCAACAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS CAA 90 bp | CGAGCGTTGATGTTGAGGCGCAACGCCTTCTGCTCTTTGGATTTCTaGCTGCTGCCGCCGCCACCGCCGCCGCTTCCGCCGCCACTTGTG | + |
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Preference number: 6 (lower is better) Translates to: RALMLRRNAFCSLDF*LLPPPPPPLPPPLV Trigger: CACAAGTGGCGGCGGAAGCGGCGGCGGTGGCGGCGGCAGCAGCAAGAAATCCAAAGAGCAGAAGGCGTTGCGCCTCAACATCAACGCTCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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| CDS TCA 72 bp | CCGTGCACTGTTTGCAGAGGCTGGACGAGACGCTGTTaGATAGGGCACACTTCTCGGGGCAGGAGGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: PCTVCRGWTRRC*IGHTSRGRRQR Trigger: CCGCTGCCTCCTGCCCCGAGAAGTGTGCCCTATTCAACAGCGTCTCGTCCAGCCTCTGCAAACAGTGCACGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026120.8 |
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