RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BHLHA9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044243

Ensembl transcript IDs: ENSMUST00000056184.2

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATaGCCTCAGATCATAGCAGCTGCCTACCCACACAGTCCCACAAGT +
Preference number: 1 (lower is better)
Translates to: LSSAAAQTGEEDHSI*PQIIAAAYPHSPTS
Trigger: ACTTGTGGGACTGTGTGGGTAGGCAGCTGCTATGATCTGAGGGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR-3UTR CCA 90 bp GTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATGCCCTCAGATCATTCACCACCCCAGGCTaGGATGTGGGAAGGCTGCCC +
Preference number: 2 (lower is better)
Translates to: VQQQPKPGKRTTAYALRSFTTPG*DVGRLP
Trigger: GGGCAGCCTTCCCACATCCCAGCCTGGGGTGGTGAA...TGATCTGAGGGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR-3UTR GCA 90 bp TCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATGCCCTTGCCATCTTCTCTTTTaGAGTCACTCGGGCCAAGCC +
Preference number: 2 (lower is better)
Translates to: SLSSAAAQTGEEDHSICPCHLLF*SHSGQA
Trigger: GGCTTGGCCCGAGTGACTGCAAAAGAGAAGATGGCA...AGGGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR-3UTR TCA 90 bp TCTGGGCTTCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATTGCTCTGTCCAGGATaGCTTCTGCCATCTTCTCTT +
Preference number: 2 (lower is better)
Translates to: SGLLSVQQQPKPGKRTTALLCPG*LLPSSL
Trigger: AAGAGAAGATGGCAGAAGTCATCCTGGACAGAGCAA...TGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAGCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR CCA 72 bp AATCTCCCTTCTTTTTCACCACCCCAGGCTGGGATGTaGGAAGGCTGCCCTGAGCCCGGTAGTTCCTTCCCA +
Preference number: 3 (lower is better)
Translates to: NLPSFSPPQAGM*EGCPEPGSSFP
Trigger: TGGGAAGGAACTACCGGGCTCAGGGCAGCCTTCCCACATCCCAGCCTGGGGTGGTGAAAAAGAAGGGAGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR GCA 72 bp TGCTCTGTCCAGGATGACTTCTGCCATCTTCTCTTTTaGAGTCACTCGGGCCAAGCCGGCTTCCCTCTGGGT +
Preference number: 3 (lower is better)
Translates to: CSVQDDFCHLLF*SHSGQAGFPLG
Trigger: ACCCAGAGGGAAGCCGGCTTGGCCCGAGTGACTGCAAAAGAGAAGATGGCAGAAGTCATCCTGGACAGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR GCA 72 bp AGAGGACCACAGCATATGCCCTCAGATCATAGCAGCTaGCTACCCACACAGTCCCACAAGTCCCACTTTCCA +
Preference number: 3 (lower is better)
Translates to: RGPQHMPSDHSS*LPTQSHKSHFP
Trigger: TGGAAAGTGGGACTTGTGGGACTGTGTGGGTAGGCAGCTGCTATGATCTGAGGGCATATGCTGTGGTCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
3UTR GCA 72 bp CTCCTTTGCCACGCAAGTCACAACCCCATTCAATTTTaGTCTGTCCAGGATGACTTCTGCCATCTTCTCTTT +
Preference number: 3 (lower is better)
Translates to: LLCHASHNPIQF*SVQDDFCHLLF
Trigger: AAAGAGAAGATGGCAGAAGTCATCCTGGACAGAGCAAAATTGAATGGGGTTGTGACTTGCGTGGCAAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp GTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATGCCCTCAGATCACCTCCGAGGTCATGCTaGAGCGCCCGGCGGAGCGCG +
Preference number: 4 (lower is better)
Translates to: VQQQPKPGKRTTAYALRSPPRSC*SARRSA
Trigger: CGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAGG...TGATCTGAGGGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR TCA 90 bp CACAGTCCCACAAGTCCCACTTTCCAAAGGCGGCAAGGGAAAAGGAGGGCTCAGGGAGCCCCAGGACATTaGCGCCAGTTTCCCCCGGAG +
Preference number: 4 (lower is better)
Translates to: HSPTSPTFQRRQGKRRAQGAPGH*RQFPPE
Trigger: CTCCGGGGGAAACTGGCGTCAATGTCCTGGGGCTCC...CTGAGCCCTCCTTTTCCCTTGCCGCCTTTGGAAAGTGGGACTTGTGGGACTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR TCA 90 bp TTTTCTGGGCTTCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACACCCGGCGGAGCGCGTTaGACGCCTCGTTGTAATCCA +
Preference number: 4 (lower is better)
Translates to: FSGLLSVQQQPKPGKRTTPGGAR*TPRCNP
Trigger: TGGATTACAACGAGGCGTTCAACGCGCTCCGCCGGG...TGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAGCCCAGAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp TCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATGCCCTCAGATCATAGCCGCTCGCGCTTTCTaGCAGCTGCCTCTTCTGCCT +
Preference number: 4 (lower is better)
Translates to: SAAAQTGEEDHSICPQIIAARAF*QLPLLP
Trigger: AGGCAGAAGAGGCAGCTGGCAGAAAGCGCGAGCGGC...TATGATCTGAGGGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp TGCCTACCCACACAGTCCCACAAGTCCCACTTTCCAAAGGCGGCAAGGGAAAAGGCCAGCTGCCTCTTCTaGCTCGTCCAAGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: CLPTQSHKSHFPKAAREKASCLF*LVQAAP
Trigger: AGGAGCAGCTTGGACGAGGCAGAAGAGGCAGCTGGC...CTTTTCCCTTGCCGCCTTTGGAAAGTGGGACTTGTGGGACTGTGTGGGTAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CCA 90 bp CTGCCTACCCACACAGTCCCACAAGTCCCACTTTCCAAAGGCGGCAAGGGAAAAAGAGCAGTGATGCGGTaGATGGCCCTGCGCAGCGTA +
Preference number: 4 (lower is better)
Translates to: LPTHTVPQVPLSKGGKGKRAVMR*MALRSV
Trigger: TACGCTGCGCAGGGCCATCCACCGCATCACTGCTCT...TTTTCCCTTGCCGCCTTTGGAAAGTGGGACTTGTGGGACTGTGTGGGTAGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CCA 90 bp CTGGGCTTCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATAGGTTTGGGCCAAATTaGGCACTTCGGCCATCACCC +
Preference number: 4 (lower is better)
Translates to: LGFSQFSSSPNRGRGPQHRFGPN*ALRPSP
Trigger: GGGTGATGGCCGAAGTGCCCAATTTGGCCCAAACCT...ATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp CATTTTCTGGGCTTCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCAGCACTCCAAAATTCCTaGCAGCCTCCGAGCAGGAGC +
Preference number: 4 (lower is better)
Translates to: HFLGFSQFSSSPNRGRGPALQNS*QPPSRS
Trigger: GCTCCTGCTCGGAGGCTGGCAGGAATTTTGGAGTGC...TGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAGCCCAGAAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp GATGACTTCTGCCATCTTCTCTTTTGCAGTCACTCGGGCCAAGCCGGCTTCCCTCGTTGTAATCCAGGATaGGCTTGCGCTCCCGCACGT +
Preference number: 4 (lower is better)
Translates to: DDFCHLLFCSHSGQAGFPRCNPG*ACAPAR
Trigger: ACGTGCGGGAGCGCAAGCGCATCCTGGATTACAACG...AGGGAAGCCGGCTTGGCCCGAGTGACTGCAAAAGAGAAGATGGCAGAAGTCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp CCACAAGTCCCACTTTCCAAAGGCGGCAAGGGAAAAGGAGGGCTCAGAAGCAAACTGCCTCGTCCAAGCTaGTCCTCCTCAGCACTCCAA +
Preference number: 4 (lower is better)
Translates to: PQVPLSKGGKGKGGLRSKLPRPS*SSSALQ
Trigger: TTGGAGTGCTGAGGAGGAGCAGCTTGGACGAGGCAG...TTTGCTTCTGAGCCCTCCTTTTCCCTTGCCGCCTTTGGAAAGTGGGACTTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp GCCACGCAAGTCACAACCCCATTCAATTTTGCTCTGTCCAGGATGACTTCTGCCGCGCTTTCTGCCAGCTaGCTCTTCTGCCTCGTCCAA +
Preference number: 4 (lower is better)
Translates to: ATQVTTPFNFALSRMTSAALSAS*LFCLVQ
Trigger: TTGGACGAGGCAGAAGAGGCAGCTGGCAGAAAGCGC...GGCAGAAGTCATCCTGGACAGAGCAAAATTGAATGGGGTTGTGACTTGCGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR GCA 90 bp CTTTGCCACGCAAGTCACAACCCCATTCAATTTTGCTCTGTCCAGGATGACTTCTCTTGGAGAGCCTCTTaGCTCCGAGGTCATGCTGCA +
Preference number: 4 (lower is better)
Translates to: LCHASHNPIQFCSVQDDFSWRAS*LRGHAA
Trigger: TGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGA...GAAGTCATCCTGGACAGAGCAAAATTGAATGGGGTTGTGACTTGCGTGGCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS TCA 90 bp GCCTCTTGCCTCCGAGGTCATGCTGCAGCGCCCGGCGGAGCGCGTTaGACGCCTCGTTGTAATCCAGGATGCGCTTGCGCTCCCGCACGT +
Preference number: 5 (lower is better)
Translates to: ASCLRGHAAAPGGAR*TPRCNPGCACAPAR
Trigger: ACGTGCGGGAGCGCAAGCGCATCCTGGATTACAACGAGGCGTTCAACGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAGGCAAGAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 90 bp TGGGCCAAATTGGGCACTTCGGCCATCACCCTAGGCCGCCCCAAGTaGGAGTGCGGGGAACACGAAGCGCAGCGCGGTGTAGGCGGCACT +
Preference number: 5 (lower is better)
Translates to: WAKLGTSAITLGRPK*ECGEHEAQRGVGGT
Trigger: AGTGCCGCCTACACCGCGCTGCGCTTCGTGTTCCCCGCACTCGCACTTGGGGCGGCCTAGGGTGATGGCCGAAGTGCCCAATTTGGCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 90 bp GCGCCGAGCCTTGGACCGTGTGGGCCGCTCGCGCTTTCTGCCAGCTaGCTCTTCTGCCTCGTCCAAGCTGCTCCTCCTCAGCACTCCAAA +
Preference number: 5 (lower is better)
Translates to: APSLGPCGPLALSAS*LFCLVQAAPPQHSK
Trigger: TTTGGAGTGCTGAGGAGGAGCAGCTTGGACGAGGCAGAAGAGGCAGCTGGCAGAAAGCGCGAGCGGCCCACACGGTCCAAGGCTCGGCGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 90 bp AAATTGGGCACTTCGGCCATCACCCTAGGCCGCCCCAAGTGCGAGTaGGGGGAACACGAAGCGCAGCGCGGTGTAGGCGGCACTAAGGGG +
Preference number: 5 (lower is better)
Translates to: KLGTSAITLGRPKCE*GEHEAQRGVGGTKG
Trigger: CCCCTTAGTGCCGCCTACACCGCGCTGCGCTTCGTGTTCCCCGCACTCGCACTTGGGGCGGCCTAGGGTGATGGCCGAAGTGCCCAATTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 90 bp GCCGCTCGCGCTTTCTGCCAGCTGCCTCTTCTGCCTCGTCCAAGCTaGTCCTCCTCAGCACTCCAAAATTCCTGCCAGCCTCCGAGCAGG +
Preference number: 5 (lower is better)
Translates to: AARAFCQLPLLPRPS*SSSALQNSCQPPSR
Trigger: CCTGCTCGGAGGCTGGCAGGAATTTTGGAGTGCTGAGGAGGAGCAGCTTGGACGAGGCAGAAGAGGCAGCTGGCAGAAAGCGCGAGCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CAA 90 bp CTTCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATGCCCCCCGTGCTCGAGCCTaGGGCAGCCTGGCCGTGACA +
Preference number: 5 (lower is better)
Translates to: LLSVQQQPKPGKRTTAYAPRARA*GSLAVT
Trigger: TGTCACGGCCAGGCTGCCCAAGGCTCGAGCACGGGG...GGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CAA 90 bp GATGACTTCTGCCATCTTCTCTTTTGCAGTCACTCGGGCCAAGCCGGCTTCCCTCGCAGCGTAGCGATCTaGGAGAGCCTCTTGCCTCCG +
Preference number: 5 (lower is better)
Translates to: DDFCHLLFCSHSGQAGFPRSVAI*ESLLPP
Trigger: CGGAGGCAAGAGGCTCTCCAAGATCGCTACGCTGCG...AGGGAAGCCGGCTTGGCCCGAGTGACTGCAAAAGAGAAGATGGCAGAAGTCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CAA 90 bp CCCACACAGTCCCACAAGTCCCACTTTCCAAAGGCGGCAAGGGAAAAGGAGGGCGAGGTTTGGGCCAAATaGGGCACTTCGGCCATCACC +
Preference number: 5 (lower is better)
Translates to: PTQSHKSHFPKAAREKEGEVWAK*GTSAIT
Trigger: GGTGATGGCCGAAGTGCCCAATTTGGCCCAAACCTC...GCCCTCCTTTTCCCTTGCCGCCTTTGGAAAGTGGGACTTGTGGGACTGTGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CAA 90 bp CTTCTCTCAGTTCAGCAGCAGCCCAAACCGGGGAAGAGGACCACAGCATATGCCGTTTCCCCCGGAGGTTaGGGCCAAATTGGGCACTTC +
Preference number: 5 (lower is better)
Translates to: LLSVQQQPKPGKRTTAYAVSPGG*GQIGHF
Trigger: GAAGTGCCCAATTTGGCCCAAACCTCCGGGGGAAAC...GGCATATGCTGTGGTCCTCTTCCCCGGTTTGGGCTGCTGCTGAACTGAGAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS-3UTR CAA 90 bp CCACTTTCCAAAGGCGGCAAGGGAAAAGGAGGGCTCAGAAGCAAAGGAAAGCAAATCTTGGAGAGCCTCTaGCCTCCGAGGTCATGCTGC +
Preference number: 5 (lower is better)
Translates to: PLSKGGKGKGGLRSKGKQILESL*PPRSCC
Trigger: GCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGAT...TTGCTTTCCTTTGCTTCTGAGCCCTCCTTTTCCCTTGCCGCCTTTGGAAAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS CAA 72 bp TTGCGCTCCCGCACGTTAGCCGCCATGCGCCGAGCCTaGGACCGTGTGGGCCGCTCGCGCTTTCTGCCAGCT +
Preference number: 6 (lower is better)
Translates to: LRSRTLAAMRRA*DRVGRSRFLPA
Trigger: AGCTGGCAGAAAGCGCGAGCGGCCCACACGGTCCAAGGCTCGGCGCATGGCGGCTAACGTGCGGGAGCGCAA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 72 bp GCCGAGCCTTGGACCGTGTGGGCCGCTCGCGCTTTCTaGCAGCTGCCTCTTCTGCCTCGTCCAAGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: AEPWTVWAARAF*QLPLLPRPSCS
Trigger: GGAGCAGCTTGGACGAGGCAGAAGAGGCAGCTGGCAGAAAGCGCGAGCGGCCCACACGGTCCAAGGCTCGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS CAA 72 bp ATGGCCCTGCGCAGCGTAGCGATCTTGGAGAGCCTCTaGCCTCCGAGGTCATGCTGCAGCGCCCGGCGGAGC +
Preference number: 6 (lower is better)
Translates to: MALRSVAILESL*PPRSCCSARRS
Trigger: GCTCCGCCGGGCGCTGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGATCGCTACGCTGCGCAGGGCCAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS CAA 90 bp ATGCGGTGGATGGCCCTGCGCAGCGTAGCGATCTTGGAGAGCCTCTaGCCTCCGAGGTCATGCTGCAGCGCCCGGCGGAGCGCGTTGAAC +
Preference number: 6 (lower is better)
Translates to: MRWMALRSVAILESL*PPRSCCSARRSALN
Trigger: GTTCAACGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGATCGCTACGCTGCGCAGGGCCATCCACCGCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 72 bp GCGATCTTGGAGAGCCTCTTGCCTCCGAGGTCATGCTaGAGCGCCCGGCGGAGCGCGTTGAACGCCTCGTTG +
Preference number: 6 (lower is better)
Translates to: AILESLLPPRSC*SARRSALNASL
Trigger: CAACGAGGCGTTCAACGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGATCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 72 bp GTAGCGATCTTGGAGAGCCTCTTGCCTCCGAGGTCATaGTGCAGCGCCCGGCGGAGCGCGTTGAACGCCTCG +
Preference number: 6 (lower is better)
Translates to: VAILESLLPPRS*CSARRSALNAS
Trigger: CGAGGCGTTCAACGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGATCGCTAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 72 bp TTGGGCACTTCGGCCATCACCCTAGGCCGCCCCAAGTaGGAGTGCGGGGAACACGAAGCGCAGCGCGGTGTA +
Preference number: 6 (lower is better)
Translates to: LGTSAITLGRPK*ECGEHEAQRGV
Trigger: TACACCGCGCTGCGCTTCGTGTTCCCCGCACTCGCACTTGGGGCGGCCTAGGGTGATGGCCGAAGTGCCCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS CAA 90 bp GATAGAGCAGTGATGCGGTGGATGGCCCTGCGCAGCGTAGCGATCTaGGAGAGCCTCTTGCCTCCGAGGTCATGCTGCAGCGCCCGGCGG +
Preference number: 6 (lower is better)
Translates to: DRAVMRWMALRSVAI*ESLLPPRSCCSARR
Trigger: CCGCCGGGCGCTGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGATCGCTACGCTGCGCAGGGCCATCCACCGCATCACTGCTCTATC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS TCA 72 bp CTCCGAGGTCATGCTGCAGCGCCCGGCGGAGCGCGTTaGACGCCTCGTTGTAATCCAGGATGCGCTTGCGCT +
Preference number: 6 (lower is better)
Translates to: LRGHAAAPGGAR*TPRCNPGCACA
Trigger: AGCGCAAGCGCATCCTGGATTACAACGAGGCGTTCAACGCGCTCCGCCGGGCGCTGCAGCATGACCTCGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 72 bp CTTGGACCGTGTGGGCCGCTCGCGCTTTCTGCCAGCTaGCTCTTCTGCCTCGTCCAAGCTGCTCCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: LGPCGPLALSAS*LFCLVQAAPPQ
Trigger: CTGAGGAGGAGCAGCTTGGACGAGGCAGAAGAGGCAGCTGGCAGAAAGCGCGAGCGGCCCACACGGTCCAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS CAA 72 bp GTGATGCGGTGGATGGCCCTGCGCAGCGTAGCGATCTaGGAGAGCCTCTTGCCTCCGAGGTCATGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: VMRWMALRSVAI*ESLLPPRSCCS
Trigger: GCTGCAGCATGACCTCGGAGGCAAGAGGCTCTCCAAGATCGCTACGCTGCGCAGGGCCATCCACCGCATCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS CAA 72 bp AGCCCCAGGACATTGACGCCAGTTTCCCCCGGAGGTTaGGGCCAAATTGGGCACTTCGGCCATCACCCTAGG +
Preference number: 6 (lower is better)
Translates to: SPRTLTPVSPGG*GQIGHFGHHPR
Trigger: CCTAGGGTGATGGCCGAAGTGCCCAATTTGGCCCAAACCTCCGGGGGAAACTGGCGTCAATGTCCTGGGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2
CDS GCA 72 bp GCTTTCTGCCAGCTGCCTCTTCTGCCTCGTCCAAGCTaGTCCTCCTCAGCACTCCAAAATTCCTGCCAGCCT +
Preference number: 6 (lower is better)
Translates to: AFCQLPLLPRPS*SSSALQNSCQP
Trigger: AGGCTGGCAGGAATTTTGGAGTGCTGAGGAGGAGCAGCTTGGACGAGGCAGAAGAGGCAGCTGGCAGAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056184.2