Pregenerated sensors for BGLAP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074489Ensembl transcript IDs: ENSMUST00000075523.11, ENSMUST00000107542.2, ENSMUST00000107543.8
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGGGGAGGATCAAGTTCTaGAGAGCAGCCAAAGCCGAG | + |
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Preference number: 2 (lower is better) Translates to: SSSELYFGAAVTSILAGQGRIKF*RAAKAE Trigger: CTCGGCTTTGGCTGCTCTCCAGAACTTGATCCTCCC...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR CCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGCACATAGCTCCCGGGTaGGCTCCAGGGGATCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: SSSELYFGAAVTSILAGQHIAPG*APGDLG Trigger: GCCCAGATCCCCTGGAGCCCACCCGGGAGCTATGTG...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR TCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGCCAGGGCCAGCAGAGTaGGCAGAGAGAGGGTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: SSSELYFGAAVTSILAGQPGPAE*AERGSS Trigger: TGAGGACCCTCTCTCTGCTCACTCTGCTGGCCCTGG...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR TCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGATCTGGGCTGGGGACTaGAGCTCCAAGGTAGCGCCG | + |
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Preference number: 4 (lower is better) Translates to: SSSELYFGAAVTSILAGQIWAGD*SSKVAP Trigger: CGGCGCTACCTTGGAGCTTCAGTCCCCAGCCCAGAT...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR TCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGTGGGCGTGGCATCTGTaGGGTCAGAGAGACAGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: SSSELYFGAAVTSILAGQWAWHL*GQRDRA Trigger: CGCTCTGTCTCTCTGACCTCACAGATGCCACGCCCA...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR CCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGCCAGGGGATCTGGGCTaGGGACTGAAGCTCCAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SSSELYFGAAVTSILAGQPGDLG*GLKLQG Trigger: ACCTTGGAGCTTCAGTCCCCAGCCCAGATCCCCTGG...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR TCA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGCCTCCTGCTTGGACATaGAGGCTTTGTCAGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: SSSELYFGAAVTSILAGQPPAWT*RLCQTQ Trigger: CTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGG...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS CCA 90 bp | GGTCAAGCTCACATAGCTCCCGGGTGGGCTCCAGGGGATCTGGGCTaGGGACTGAAGCTCCAAGGTAGCGCCGGAGTCTGTTCACTACCT | + |
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Preference number: 5 (lower is better) Translates to: GQAHIAPGWAPGDLG*GLKLQGSAGVCSLP Trigger: AGGTAGTGAACAGACTCCGGCGCTACCTTGGAGCTTCAGTCCCCAGCCCAGATCCCCTGGAGCCCACCCGGGAGCTATGTGAGCTTGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075523.11 ENSMUST00000107542.2 ENSMUST00000107543.8 |
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| CDS-3UTR CAA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGCTGTTCACTACCTTATaGCCCTCCTGCTTGGACATG | + |
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Preference number: 5 (lower is better) Translates to: SSSELYFGAAVTSILAGQLFTTL*PSCLDM Trigger: CATGTCCAAGCAGGAGGGCAATAAGGTAGTGAACAG...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS-3UTR CAA 90 bp | TCCTCATCTGAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGTTATTGCCCTCCTGCTaGGACATGAAGGCTTTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SSSELYFGAAVTSILAGQLLPSC*DMKALS Trigger: TGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAA...CTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTCAGATGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107543.8 |
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| CDS TCA 72 bp | CTTTGTCAGACTCAGGGCCGGTGGGCGTGGCATCTGTaGGGTCAGAGAGACAGAGCGCAGCCAGGGCCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: LCQTQGRWAWHL*GQRDRAQPGPA Trigger: TGCTGGCCCTGGCTGCGCTCTGTCTCTCTGACCTCACAGATGCCACGCCCACCGGCCCTGAGTCTGACAAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075523.11 ENSMUST00000107542.2 ENSMUST00000107543.8 |
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| CDS TCA 72 bp | GTCTGTTCACTACCTTATTGCCCTCCTGCTTGGACATaGAGGCTTTGTCAGACTCAGGGCCGGTGGGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: VCSLPYCPPAWT*RLCQTQGRWAW Trigger: CCACGCCCACCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGTAGTGAACAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075523.11 ENSMUST00000107542.2 ENSMUST00000107543.8 |
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| CDS CAA 72 bp | ACTACCTTATTGCCCTCCTGCTTGGACATGAAGGCTTaGTCAGACTCAGGGCCGGTGGGCGTGGCATCTGTG | + |
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Preference number: 6 (lower is better) Translates to: TTLLPSCLDMKA*SDSGPVGVASV Trigger: CACAGATGCCACGCCCACCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGTAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075523.11 ENSMUST00000107542.2 ENSMUST00000107543.8 |
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| CDS CAA 72 bp | CGCCGGAGTCTGTTCACTACCTTATTGCCCTCCTGCTaGGACATGAAGGCTTTGTCAGACTCAGGGCCGGTG | + |
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Preference number: 6 (lower is better) Translates to: RRSLFTTLLPSC*DMKALSDSGPV Trigger: CACCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGTAGTGAACAGACTCCGGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075523.11 ENSMUST00000107542.2 ENSMUST00000107543.8 |
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| CDS CAA 90 bp | AGTCTGTTCACTACCTTATTGCCCTCCTGCTTGGACATGAAGGCTTaGTCAGACTCAGGGCCGGTGGGCGTGGCATCTGTGAGGTCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SLFTTLLPSCLDMKA*SDSGPVGVASVRSE Trigger: CTCTGACCTCACAGATGCCACGCCCACCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGTAGTGAACAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075523.11 ENSMUST00000107542.2 ENSMUST00000107543.8 |
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