Pregenerated sensors for BGLAP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074486Ensembl transcript IDs: ENSMUST00000098956.3
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGAGAGAGAGGACGGGTTAAGCTCACACTaGTCCCGGGTGGGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TLFWSCCDIHTCRAEREDGLSSH*SRVGSR Trigger: CCTGGAGCCCACCCGGGAGCAGTGTGAGCTTAACCC...GTCCTCTCTCTCTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098956.3 |
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| CDS-3UTR GCA 90 bp | ACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGAGAGAGAGGACACCTTATTGCCCTCCTaGTTGGACATGAAGGCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: TLFWSCCDIHTCRAEREDTLLPS*LDMKAL Trigger: CAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGT...GTCCTCTCTCTCTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098956.3 |
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| CDS-3UTR CAA 90 bp | GAACTTTATTTTGGAGCTGCTGTGACATCCATACTTGCAGGGCAGAGAGAGAGGTTGGACATGAAGGCTTaGTCAGACTCAGGGCCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: ELYFGAAVTSILAGQRERLDMKA*SDSGPL Trigger: CAGCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAA...CCTCTCTCTCTGCCCTGCAAGTATGGATGTCACAGCAGCTCCAAAATAAAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098956.3 |
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| CDS TCA 72 bp | CTTTGTCAGACTCAGGGCCGCTGGGCTTGGCATCTGTaGGGTCAGAGAGACAGAGCGCAGCCAGGGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LCQTQGRWAWHL*GQRDRAQPGPA Trigger: TGCTGGCCCTGGCTGCGCTCTGTCTCTCTGACCTCACAGATGCCAAGCCCAGCGGCCCTGAGTCTGACAAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098956.3 |
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| CDS CAA 90 bp | TCCTGCTTGGACATGAAGGCTTTGTCAGACTCAGGGCCGCTGGGCTaGGCATCTGTGAGGTCAGAGAGACAGAGCGCAGCCAGGGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SCLDMKALSDSGPLG*ASVRSERQSAARAS Trigger: GCTGGCCCTGGCTGCGCTCTGTCTCTCTGACCTCACAGATGCCAAGCCCAGCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098956.3 |
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| CDS TCA 72 bp | GTCTGTTCACTACCTTATTGCCCTCCTGCTTGGACATaGAGGCTTTGTCAGACTCAGGGCCGCTGGGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: VCSLPYCPPAWT*RLCQTQGRWAW Trigger: CCAAGCCCAGCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGTAGTGAACAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098956.3 |
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