Pregenerated sensors for BEX2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042750

Ensembl transcript IDs: ENSMUST00000049130.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR TCA 90 bp	TGTAAGACTGAGTCGAAAACACAAGTTTCAATTAGAAGCTGGCAGAAGTTGGAGCCATGGGGAAACAAGTaGCACCAGAAATATTACAAC	+
Preference number: 2 (lower is better) Translates to: CKTESKTQVSIRSWQKLEPWGNK*HQKYYN Trigger: GTTGTAATATTTCTGGTGTCACTTGTTTCCCCATGG...CTCCAACTTCTGCCAGCTTCTAATTGAAACTTGTGTTTTCGACTCAGTCTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049130.8
CDS-3UTR CCA 90 bp	CACAAGTTTCAATTAGAAGCTGGCAGAAGTTGGAGCCCCATGGGGAAACAAGTGTTTGCTAGCATCCTGTaGCTTTTCTTCCTTTTCCTC	+
Preference number: 4 (lower is better) Translates to: HKFQLEAGRSWSPMGKQVFASIL*LFFLFL Trigger: GAGGAAAAGGAAGAAAAGCCACAGGATGCTAGCAAA...CACTTGTTTCCCCATGGGGCTCCAACTTCTGCCAGCTTCTAATTGAAACTTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000049130.8
CDS-3UTR TCA 90 bp	TGTAAGACTGAGTCGAAAACACAAGTTTCAATTAGAAGCTGGCAGAAGTTGGAGTTTTCCTCCTTTTCCTaGTGGTCATTCTCCATGTTG	+
Preference number: 4 (lower is better) Translates to: CKTESKTQVSIRSWQKLEFSSFS*WSFSML Trigger: CAACATGGAGAATGACCATCAGGAAAAGGAGGAAAA...CTCCAACTTCTGCCAGCTTCTAATTGAAACTTGTGTTTTCGACTCAGTCTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049130.8
CDS-3UTR CAA 90 bp	GTAAGACTGAGTCGAAAACACAAGTTTCAATTAGAAGCTGGCAGAAGTTGGAGCACAATCGGATCCCTTTaGCTAGCATCCTGTGGCTTT	+
Preference number: 5 (lower is better) Translates to: VRLSRKHKFQLEAGRSWSTIGSL*LASCGF Trigger: AAAGCCACAGGATGCTAGCAAAAGGGATCCGATTGT...GCTCCAACTTCTGCCAGCTTCTAATTGAAACTTGTGTTTTCGACTCAGTCTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049130.8
CDS-3UTR CAA 90 bp	AAACACAAGTTTCAATTAGAAGCTGGCAGAAGTTGGAGCCCCATGGGGAAACAATGGTCATTCTCCATGTaGAGATTTTTCACGCCTTGT	+
Preference number: 5 (lower is better) Translates to: KHKFQLEAGRSWSPMGKQWSFSM*RFFTPC Trigger: ACAAGGCGTGAAAAATCTCAACATGGAGAATGACCA...TTGTTTCCCCATGGGGCTCCAACTTCTGCCAGCTTCTAATTGAAACTTGTGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049130.8
CDS CAA 72 bp	CCAGCTTCGAAAGGCAGGGCCACAATCGGATCCCTTTaGCTAGCATCCTGTGGCTTTTCTTCCTTTTCCTCC	+
Preference number: 6 (lower is better) Translates to: PASKGRATIGSL*LASCGFSSFSS Trigger: GGAGGAAAAGGAAGAAAAGCCACAGGATGCTAGCAAAAGGGATCCGATTGTGGCCCTGCCTTTCGAAGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049130.8