Pregenerated sensors for BEX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050071

Ensembl transcript IDs: ENSMUST00000058125.9, ENSMUST00000113118.2, ENSMUST00000113120.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR GCA 90 bp	GATCTTCCCATGCAATTGATAAATTCTGCTAACAAAAGAATTATAGGCCGAGTAGCGACCTCCTCTAGGTaGACAGTTTTTGCCAGCCTC	+
Preference number: 4 (lower is better) Translates to: DLPMQLINSANKRIIGRVATSSR*TVFASL Trigger: GAGGCTGGCAAAAACTGTGCACCTAGAGGAGGTCGC...TACTCGGCCTATAATTCTTTTGTTAGCAGAATTTATCAATTGCATGGGAAGATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058125.9 ENSMUST00000113118.2 ENSMUST00000113120.2
CDS-3UTR TCA 90 bp	GATCTTCCCATGCAATTGATAAATTCTGCTAACAAAAGAATTATAGGCCGAGTATTCTCCTCCTTTTTCTaGTGGTCATTCTCCATGTTG	+
Preference number: 4 (lower is better) Translates to: DLPMQLINSANKRIIGRVFSSFF*WSFSML Trigger: CAACATGGAGAATGACCATCAGAAAAAGGAGGAGAA...TACTCGGCCTATAATTCTTTTGTTAGCAGAATTTATCAATTGCATGGGAAGATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058125.9 ENSMUST00000113118.2 ENSMUST00000113120.2
CDS-3UTR CCA 90 bp	GATCTTCCCATGCAATTGATAAATTCTGCTAACAAAAGAATTATAGGCCGAGTATCTGATGGTATCTTGTaGCTTTTCTTCCTTCTCCTC	+
Preference number: 4 (lower is better) Translates to: DLPMQLINSANKRIIGRVSDGIL*LFFLLL Trigger: GAGGAGAAGGAAGAAAAGCCACAAGATACCATCAGA...TACTCGGCCTATAATTCTTTTGTTAGCAGAATTTATCAATTGCATGGGAAGATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058125.9 ENSMUST00000113118.2 ENSMUST00000113120.2
CDS-3UTR CAA 90 bp	GATCTTCCCATGCAATTGATAAATTCTGCTAACAAAAGAATTATAGGCCGAGTACCTTCTGATGGTATCTaGTGGCTTTTCTTCCTTCTC	+
Preference number: 5 (lower is better) Translates to: DLPMQLINSANKRIIGRVPSDGI*WLFFLL Trigger: GAGAAGGAAGAAAAGCCACAAGATACCATCAGAAGG...TACTCGGCCTATAATTCTTTTGTTAGCAGAATTTATCAATTGCATGGGAAGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000058125.9 ENSMUST00000113118.2 ENSMUST00000113120.2
CDS CAA 72 bp	CGGAACCGCCTGCGACCTCCTCTAGGTGCACAGTTTTaGCCAGCCTCGGAGGTCAGGGCCACAGCTGGCTCC	+
Preference number: 6 (lower is better) Translates to: RNRLRPPLGAQF*PASEVRATAGS Trigger: GGAGCCAGCTGTGGCCCTGACCTCCGAGGCTGGCAAAAACTGTGCACCTAGAGGAGGTCGCAGGCGGTTCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058125.9 ENSMUST00000113118.2 ENSMUST00000113120.2
CDS TCA 72 bp	CAGCCTCGGAGGTCAGGGCCACAGCTGGCTCCCTTCTaGTGGTATCTTGTGGCTTTTCTTCCTTCTCCTCCT	+
Preference number: 6 (lower is better) Translates to: QPRRSGPQLAPF*WYLVAFLPSPP Trigger: AGGAGGAGAAGGAAGAAAAGCCACAAGATACCATCAGAAGGGAGCCAGCTGTGGCCCTGACCTCCGAGGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058125.9 ENSMUST00000113118.2 ENSMUST00000113120.2

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