Pregenerated sensors for BEST3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020169Ensembl transcript IDs: ENSMUST00000020378.5
Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGGTGCAGACAGCTCTCCCATGCTGGAGTaGAGCTTGGGGCTGCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SPNAGQFLGADSGTGADSSPMLE*SLGLPS Trigger: AGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGA...GCTGTCTGCACCAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGAGCAGGCGCCCATGCTaGTCGCTCCCGTGGACACTG | + |
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Preference number: 4 (lower is better) Translates to: VGSFLQMLASSWGPIPGLSRRPC*SLPWTL Trigger: CAGTGTCCACGGGAGCGACCAGCATGGGCGCCTGCT...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGACATGGAGCTGTCGCTaGCCTGCCTGCCGAAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: VGSFLQMLASSWGPIPGLTWSCR*PACRSS Trigger: GGAGCTTCGGCAGGCAGGCCAGCGACAGCTCCATGT...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGACAGTTCTCCCATGCTaGAGTGCAGCTTGGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VGSFLQMLASSWGPIPGLTVLPC*SAAWGC Trigger: GCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGT...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGGTGCAGACAGCAGAACTGGAGGAGAGTaGAGATGGGAACGTACAGAT | + |
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Preference number: 4 (lower is better) Translates to: SPNAGQFLGADSGTGADSRTGGE*RWERTD Trigger: ATCTGTACGTTCCCATCTTCACTCTCCTCCAGTTCT...GCTGTCTGCACCAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | TGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGTCCTCCTCCTGGGGCTaGCAGGATGCTCGTGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: CIVGSFLQMLASSWGPIPSSSWG*QDARGY Trigger: GTACCCACGAGCATCCTGGCAGCCCCAGGAGGAGGA...CGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGCCACGTGGTCCATGGTaGGAAACCTCTTGTACACCG | + |
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Preference number: 4 (lower is better) Translates to: VGSFLQMLASSWGPIPGLPRGPW*ETSCTP Trigger: CGGTGTACAAGAGGTTTCCCACCATGGACCACGTGG...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCGCCAGTGTGTACGGTaGCCGGGCAGCAGAATCGTC | + |
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Preference number: 4 (lower is better) Translates to: ACIVGSFLQMLASSWGPIRQCVR*PGSRIV Trigger: GACGATTCTGCTGCCCGGCCACCGTACACACTGGCG...AATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | CTAAGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGTGCGGGCTCAGGCTCTaGAGCGTGCTGGTACGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LSSLYSRIISPNAGQFLGCGLRL*SVLVRL Trigger: CAGCCGTACCAGCACGCTGCAGAGCCTGAGCCCGCA...CCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | ATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGAGGACTCCAGAAACTCTaGCAGGCTCCACCTTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: IVGSFLQMLASSWGPIPGGLQKL*QAPPFG Trigger: CCCAAAAGGTGGAGCCTGCCAGAGTTTCTGGAGTCC...TCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTGCAGGGACGTCAGGTTaGCGTAGCGCATCAGCGTCC | + |
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Preference number: 4 (lower is better) Translates to: PCVLDNVDVFDHNALQSSAGTSG*RSASAS Trigger: GGACGCTGATGCGCTACGTCAACCTGACGTCCCTGC...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTTCGGCTGCACCCCGGTaGACTCGAGGCTCAAGATGG | + |
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Preference number: 4 (lower is better) Translates to: PCVLDNVDVFDHNALQSSSAAPR*TRGSRW Trigger: CCATCTTGAGCCTCGAGTTCACCGGGGTGCAGCCGA...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGGGCAGATTCACAAACTaGTTCCACCATCGGTTCACT | + |
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Preference number: 4 (lower is better) Translates to: VGSFLQMLASSWGPIPGLGRFTN*FHHRFT Trigger: AGTGAACCGATGGTGGAACCAGTTTGTGAATCTGCC...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | ATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTACGTAGCCTTTGGTaGGATCCAGGAACTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: IVGSFLQMLASSWGPIPGLRSLW*DPGTAF Trigger: GAAGGCAGTTCCTGGATCCCACCAAAGGCTACGTAG...TCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | TGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGCTGGCTGAAGTAGTCTaGGGATTGGGGTCTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: CIVGSFLQMLASSWGPIPLAEVV*GLGSPG Trigger: ACCTGGAGACCCCAATCCCCAGACTACTTCAGCCAG...CGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | AGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCTGTAGACGGCGAGGGTaGCGACCTGTGTGTAAACCA | + |
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Preference number: 4 (lower is better) Translates to: SSLYSRIISPNAGQFLGACRRRG*RPVCKP Trigger: TGGTTTACACACAGGTCGTCACCCTCGCCGTCTACA...GGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | AGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATGATCAACGCTGTCTCTaGTTCTGCCTTCATTCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SLYSRIISPNAGQFLGADDQRCL*FCLHSG Trigger: CCCGGAATGAAGGCAGAATCAGAGACAGCGTTGATC...ATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | AGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATGTAGTGGAGTCATGCTaGTGGCTGTCTGCTGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: SLYSRIISPNAGQFLGADVVESC*WLSAEN Trigger: GTTCTCAGCAGACAGCCATCAGCATGACTCCACTAC...ATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | TGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGTCAGTCCCGCTCGGCTaGACCCCGGTGAACTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: WMCLIITPFRVLSSLYSRSVPLG*TPVNSR Trigger: CCTCGAGTTCACCGGGGTGCAGCCGAGCGGGACTGA...CCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGTTCACTACCAGAGTaGCGTAAAACCCAAGCACAA | + |
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Preference number: 4 (lower is better) Translates to: CIVGSFLQMLASSWGPIPGSLPE*RKTQAQ Trigger: TTGTGCTTGGGTTTTACGTCACTCTGGTAGTGAACC...CGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | ATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGATCAGATGAGGCGATTTaGGGTGGTCGAATAATTTCC | + |
|
Preference number: 4 (lower is better) Translates to: IVGSFLQMLASSWGPIPGSDEAI*GGRIIS Trigger: GGAAATTATTCGACCACCTCAAATCGCCTCATCTGA...TCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTCCAGGTGGGGTCCCTaGAGGCTCTACCTGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: FRVLSSLYSRIISPNAGQSRWGP*RLYLLL Trigger: GAGCAGCAGGTAGAGCCTTCAGGGACCCCACCTGGA...CTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | ATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCGACCTCACGCTGGACTaGGGGCTCAGGCTCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: MCLIITPFRVLSSLYSRIDLTLD*GLRLCS Trigger: GCTGCAGAGCCTGAGCCCGCAGTCCAGCGTGAGGTC...GATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTGAGCATCAGCCTGTCTaGCCAAGGCAGATTCACAAA | + |
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Preference number: 4 (lower is better) Translates to: ACIVGSFLQMLASSWGPIEHQPV*PRQIHK Trigger: TTTGTGAATCTGCCTTGGCCAGACAGGCTGATGCTC...AATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | TGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGTGCTGGAGTGCAGCTTaGGGCTGCCCTCTTGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: WMCLIITPFRVLSSLYSRCWSAA*GCPLGS Trigger: GCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCA...CCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTTACTCAGGAAGCGCTTaGCCCTCCTCATCACTGAGT | + |
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Preference number: 4 (lower is better) Translates to: PCVLDNVDVFDHNALQSSYSGSA*PSSSLS Trigger: ACTCAGTGATGAGGAGGGTCAAGCGCTTCCTGAGTA...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | CTAAGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGATTCCGTTGGTCTCTaGGGGTGTTTCTGTGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LSSLYSRIISPNAGQFLGDSVGL*GCFCVR Trigger: CCTGACACAGAAACACCCTCAGAGACCAACGGAATC...CCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACTTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTGTTGATCAGCTGCTCTaGAACCTTGAGCCATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: PCVLDNVDVFDHNALQSSVDQLL*NLEPSC Trigger: GCAGGATGGCTCAAGGTTGCAGAGCAGCTGATCAAC...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | ATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCACCACAGCCAGTCCTCTaGGGGGAAGTTGGACCCGGA | + |
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Preference number: 4 (lower is better) Translates to: IITPFRVLSSLYSRIISPPQPVL*GEVGPG Trigger: TCCGGGTCCAACTTCCCCGCAGAGGACTGGCTGTGG...TGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGCTGATGGCTGTCTGCTaGGAACGCTGGTGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: WMCLIITPFRVLSSLYSRLMAVC*ERWCFS Trigger: GCTGAAGCACCAGCGTTCTCAGCAGACAGCCATCAG...CCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTGCCAAGAGAGAGACCTaGAGGTTTCTGTCAATGCAC | + |
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Preference number: 4 (lower is better) Translates to: PCVLDNVDVFDHNALQSSAKRET*RFLSMH Trigger: GTGCATTGACAGAAACCTGCAGGTCTCTCTCTTGGC...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | AGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATCTTCATTCCGGGCTTTaGTTGCAAGATTTCCAAACC | + |
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Preference number: 4 (lower is better) Translates to: SLYSRIISPNAGQFLGADLHSGL*LQDFQT Trigger: GGTTTGGAAATCTTGCAACCAAAGCCCGGAATGAAG...ATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | ATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCTTGGGGCTGCCCTCTTaGGAGCGGGATTGCTTCCGT | + |
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Preference number: 4 (lower is better) Translates to: MCLIITPFRVLSSLYSRILGLPS*ERDCFR Trigger: ACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAA...GATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTTGTAAACCAGCGGAATaGCAACCCAGTCGTAACCAA | + |
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Preference number: 4 (lower is better) Translates to: PCVLDNVDVFDHNALQSSCKPAE*QPSRNQ Trigger: TTGGTTACGACTGGGTTGGCATTCCGCTGGTTTACA...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | ATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCCCTGCTTCGACCACGTaGTCCATGGTGGGAAACCTC | + |
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Preference number: 4 (lower is better) Translates to: MCLIITPFRVLSSLYSRIPASTT*SMVGNL Trigger: GAGGTTTCCCACCATGGACCACGTGGTCGAAGCAGG...GATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTTACGGCTGGTCTCCCTaGTGGTGGACAGTTCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LIITPFRVLSSLYSRIISYGWSP*WWTVLP Trigger: TGGGAGAACTGTCCACCATCAGGGAGACCAGCCGTA...AGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | TTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTGTGGGATCCAGGAACTaGCTTCCGATCAGGCACGCA | + |
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Preference number: 4 (lower is better) Translates to: LIITPFRVLSSLYSRIISVGSRN*LPIRHA Trigger: TGCGTGCCTGATCGGAAGGCAGTTCCTGGATCCCAC...AGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCTTCCCCGAAAGGGTTaGTCAGCTGCTCTGCAACCT | + |
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Preference number: 4 (lower is better) Translates to: LIITPFRVLSSLYSRIISLPRKG*SAALQP Trigger: AGGTTGCAGAGCAGCTGATCAACCCTTTCGGGGAAG...AGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | GCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTAAGCACAAAGGTTACTaGAATTTGTTCAGCATATCT | + |
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Preference number: 4 (lower is better) Translates to: ACIVGSFLQMLASSWGPIKHKGY*NLFSIS Trigger: AGATATGCTGAACAAATTCCAGTAACCTTTGTGCTT...AATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | ATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCACAGGATGGATTCCGTTaGTCTCTGAGGGTGTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: IITPFRVLSSLYSRIISPQDGFR*SLRVFL Trigger: CAGAAACACCCTCAGAGACCAACGGAATCCATCCTG...TGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | TGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTACTACCTCTCCACTTaGGAAGCAACCTATGAAATC | + |
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Preference number: 4 (lower is better) Translates to: CVLDNVDVFDHNALQSSKYYLST*EATYEI Trigger: GATTTCATAGGTTGCTTCTCAAGTGGAGAGGTAGTA...CTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | ATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCAAACCAAATAAGAGGCTaGACCAAGAGCGGTACCGAT | + |
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Preference number: 4 (lower is better) Translates to: IITPFRVLSSLYSRIISPNQIRG*TKSGTD Trigger: ATCGGTACCGCTCTTGGTGCAGCCTCTTATTTGGTT...TGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CCA 90 bp | ATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCGCAGGCTCCACCTTTTaGGAAATCTGTCATCCTCTA | + |
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Preference number: 4 (lower is better) Translates to: MCLIITPFRVLSSLYSRIAGSTF*EICHPL Trigger: TAGAGGATGACAGATTTCCCAAAAGGTGGAGCCTGC...GATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | TGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGATTCCGGGCTTTGGTTaGAAGATTTCCAAACCAAAT | + |
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Preference number: 4 (lower is better) Translates to: CVLDNVDVFDHNALQSSKIPGFG*KISKPN Trigger: ATTTGGTTTGGAAATCTTGCAACCAAAGCCCGGAAT...CTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | ATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCAGATTTCCAAACCAAATaGAGGGAACCCAGTACTTCA | + |
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Preference number: 4 (lower is better) Translates to: IITPFRVLSSLYSRIISPDFQTK*REPSTS Trigger: TGAAGTACTGGGTTCCCTTCATTTGGTTTGGAAATC...TGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR TCA 90 bp | ATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCAGATCTTCCTCGAACTTaGACAAGTCTCTTTCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: IITPFRVLSSLYSRIISPDLPRT*TSLFQY Trigger: GTACTGAAAGAGACTTGTTCAAGTTCGAGGAAGATC...TGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR GCA 90 bp | ATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCATTGGGCAAACTCATATaGATTTCATCCACAGCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: IITPFRVLSSLYSRIISPLGKLI*ISSTAK Trigger: CTTGGCTGTGGATGAAATGCATATGAGTTTGCCCAA...TGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR GCA 90 bp | TTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTGTACACCAGACTGATTaGTGTGTAAAGAACAGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: LIITPFRVLSSLYSRIISVHQTD*CVKNSK Trigger: TTTGCTGTTCTTTACACAGCAATCAGTCTGGTGTAC...AGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | GGGAGCGGGATTGCTTCCGTGTGGGCGAGCCTCGGTGGGGGTTCCTaGACGGCACATCCAGCAGATCCCGAGCTGGGCTTGGGGGTAAGA | + |
|
Preference number: 5 (lower is better) Translates to: GSGIASVWASLGGGS*TAHPADPELGLGVR Trigger: TCTTACCCCCAAGCCCAGCTCGGGATCTGCTGGATGTGCCGTCCAGGAACCCCCACCGAGGCTCGCCCACACGGAAGCAATCCCGCTCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | CTGCCCTCTTGGGAGCGGGATTGCTTCCGTGTGGGCGAGCCTCGGTaGGGGTTCCTGGACGGCACATCCAGCAGATCCCGAGCTGGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LPSWERDCFRVGEPR*GFLDGTSSRSRAGL Trigger: AAGCCCAGCTCGGGATCTGCTGGATGTGCCGTCCAGGAACCCCCACCGAGGCTCGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | AGTGCAGCTTGGGGCTGCCCTCTTGGGAGCGGGATTGCTTCCGTGTaGGCGAGCCTCGGTGGGGGTTCCTGGACGGCACATCCAGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SAAWGCPLGSGIASV*ASLGGGSWTAHPAD Trigger: ATCTGCTGGATGTGCCGTCCAGGAACCCCCACCGAGGCTCGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | GTGGACAGTTCTCCCATGCTGGAGTGCAGCTTGGGGCTGCCCTCTTaGGAGCGGGATTGCTTCCGTGTGGGCGAGCCTCGGTGGGGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: VDSSPMLECSLGLPS*ERDCFRVGEPRWGF Trigger: GAACCCCCACCGAGGCTCGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | ACGGCACATCCAGCAGATCCCGAGCTGGGCTTGGGGGTAAGAACATaGAGCTGTCGCTGGCCTGCCTGCCGAAGCTCCTCCTCCTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: TAHPADPELGLGVRT*SCRWPACRSSSSSW Trigger: CCAGGAGGAGGAGGAGCTTCGGCAGGCAGGCCAGCGACAGCTCCATGTTCTTACCCCCAAGCCCAGCTCGGGATCTGCTGGATGTGCCGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 90 bp | GGTGGGGTCCCTGAAGGCTCTACCTGCTGCTCAGTCCCGCTCGGCTaGACCCCGGTGAACTCGAGGCTCAAGATGGAGGTAGTGGAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: GGVPEGSTCCSVPLG*TPVNSRLKMEVVES Trigger: TGACTCCACTACCTCCATCTTGAGCCTCGAGTTCACCGGGGTGCAGCCGAGCGGGACTGAGCAGCAGGTAGAGCCTTCAGGGACCCCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | CGCATCAGCGTCCTTCTGAGCAGGCGCCCATGCTGGTCGCTCCCGTaGACACTGCTGGAAATGAGGAGCATCAGCCTGTCTGGCCAAGGC | + |
|
Preference number: 5 (lower is better) Translates to: RISVLLSRRPCWSLP*TLLEMRSISLSGQG Trigger: GCCTTGGCCAGACAGGCTGATGCTCCTCATTTCCAGCAGTGTCCACGGGAGCGACCAGCATGGGCGCCTGCTCAGAAGGACGCTGATGCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 90 bp | GTACGGCTGGTCTCCCTGATGGTGGACAGTTCTCCCATGCTGGAGTaGAGCTTGGGGCTGCCCTCTTGGGAGCGGGATTGCTTCCGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: VRLVSLMVDSSPMLE*SLGLPSWERDCFRV Trigger: CACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCACCATCAGGGAGACCAGCCGTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS TCA 90 bp | GTCCTCTGCGGGGAAGTTGGACCCGGACAGCCCCATTTGGATCGTTaGGCCCAGAAAGGACGGTATGCAGTAGTCGGCAGCCGCCAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: VLCGEVGPGQPHLDR*AQKGRYAVVGSRQC Trigger: ACACTGGCGGCTGCCGACTACTGCATACCGTCCTTTCTGGGCTCAACGATCCAAATGGGGCTGTCCGGGTCCAACTTCCCCGCAGAGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 90 bp | ATTTTGGTAGGGGAGGACCTCACGCTGGACTGCGGGCTCAGGCTCTaGAGCGTGCTGGTACGGCTGGTCTCCCTGATGGTGGACAGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: ILVGEDLTLDCGLRL*SVLVRLVSLMVDSS Trigger: AGAACTGTCCACCATCAGGGAGACCAGCCGTACCAGCACGCTGCAGAGCCTGAGCCCGCAGTCCAGCGTGAGGTCCTCCCCTACCAAAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS TCA 90 bp | TCCTCCTGGGGCTGCCAGGATGCTCGTGGGTACTCAGGAAGCGCTTaGCCCTCCTCATCACTGAGTGCCGGTTTCCGTGTTTCTCGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: SSWGCQDARGYSGSA*PSSSLSAGFRVSRS Trigger: ACTACGAGAAACACGGAAACCGGCACTCAGTGATGAGGAGGGTCAAGCGCTTCCTGAGTACCCACGAGCATCCTGGCAGCCCCAGGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS TCA 90 bp | ACCCCGGTGAACTCGAGGCTCAAGATGGAGGTAGTGGAGTCATGCTaGTGGCTGTCTGCTGAGAACGCTGGTGCTTCAGCGGCGGTGATT | + |
|
Preference number: 5 (lower is better) Translates to: TPVNSRLKMEVVESC*WLSAENAGASAAVI Trigger: AATCACCGCCGCTGAAGCACCAGCGTTCTCAGCAGACAGCCATCAGCATGACTCCACTACCTCCATCTTGAGCCTCGAGTTCACCGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 90 bp | TCCCGGGGACTCACAGGATCTGGACCTAAGTTTCCCAGCGAGGTGTaGCTGGACTCCAGAAACTCTGGCAGGCTCCACCTTTTGGGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: SRGLTGSGPKFPSEV*LDSRNSGRLHLLGN Trigger: ATTTCCCAAAAGGTGGAGCCTGCCAGAGTTTCTGGAGTCCAGGCACACCTCGCTGGGAAACTTAGGTCCAGATCCTGTGAGTCCCCGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | CAGAAAGGACGGTATGCAGTAGTCGGCAGCCGCCAGTGTGTACGGTaGCCGGGCAGCAGAATCGTCCCAGTAAATGTCCTTCTTCATCTT | + |
|
Preference number: 5 (lower is better) Translates to: QKGRYAVVGSRQCVR*PGSRIVPVNVLLHL Trigger: AAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGCCCGGCCACCGTACACACTGGCGGCTGCCGACTACTGCATACCGTCCTTTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | GGGGACTCACAGGATCTGGACCTAAGTTTCCCAGCGAGGTGTGCCTaGACTCCAGAAACTCTGGCAGGCTCCACCTTTTGGGAAATCTGT | + |
|
Preference number: 5 (lower is better) Translates to: GDSQDLDLSFPARCA*TPETLAGSTFWEIC Trigger: ACAGATTTCCCAAAAGGTGGAGCCTGCCAGAGTTTCTGGAGTCCAGGCACACCTCGCTGGGAAACTTAGGTCCAGATCCTGTGAGTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | GCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTATGCTGGAGTGCAGCTaGGGGCTGCCCTCTTGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: ACIVGSFLQMLASSWGPIMLECS*GLPSWE Trigger: CTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCAT...AATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGGGCAGGCTCCACCTTTaGGGAAATCTGTCATCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: VGSFLQMLASSWGPIPGLGRLHL*GNLSSS Trigger: AGAGGATGACAGATTTCCCAAAAGGTGGAGCCTGCC...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 90 bp | TCCTCGAACTTGAACAAGTCTCTTTCAGTACTGGCTGAAGTAGTCTaGGGATTGGGGTCTCCAGGTGGGGTCCCTGAAGGCTCTACCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SSNLNKSLSVLAEVV*GLGSPGGVPEGSTC Trigger: GCAGGTAGAGCCTTCAGGGACCCCACCTGGAGACCCCAATCCCCAGACTACTTCAGCCAGTACTGAAAGAGACTTGTTCAAGTTCGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | AGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGTACTCAGGAAGCGCTaGACCCTCCTCATCACTGAG | + |
|
Preference number: 5 (lower is better) Translates to: SSLYSRIISPNAGQFLGAVLRKR*TLLITE Trigger: CTCAGTGATGAGGAGGGTCAAGCGCTTCCTGAGTAC...GGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTGATCCCGAGCTGGGCTaGGGGGTAAGAACATGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PCVLDNVDVFDHNALQSSDPELG*GVRTWS Trigger: GCTCCATGTTCTTACCCCCAAGCCCAGCTCGGGATC...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTTCTTCCCCGAAAGGGTaGATCAGCTGCTCTGCAACC | + |
|
Preference number: 5 (lower is better) Translates to: PCVLDNVDVFDHNALQSSSSPKG*ISCSAT Trigger: GGTTGCAGAGCAGCTGATCAACCCTTTCGGGGAAGA...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | GTAGGATCATTTCTCCAAATGCTGGCCAGTTCCTGGGGGCCGATTCCGGGACTGATGTCCTTCTTCATCTaGGGCAAACTCATATGCATT | + |
|
Preference number: 5 (lower is better) Translates to: VGSFLQMLASSWGPIPGLMSFFI*GKLICI Trigger: AATGCATATGAGTTTGCCCAAGATGAAGAAGGACAT...CAGTCCCGGAATCGGCCCCCAGGAACTGGCCAGCATTTGGAGAAATGATCCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CAA 90 bp | TTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGTCCTCTGCGGGGAAGTaGGACCCGGACAGCCCCATT | + |
|
Preference number: 5 (lower is better) Translates to: FRVLSSLYSRIISPNAGQSSAGK*DPDSPI Trigger: AATGGGGCTGTCCGGGTCCAACTTCCCCGCAGAGGA...CTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTCCAGGATGGATTCCGTaGGTCTCTGAGGGTGTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: PCVLDNVDVFDHNALQSSPGWIP*VSEGVS Trigger: AGAAACACCCTCAGAGACCAACGGAATCCATCCTGG...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS-3UTR CAA 90 bp | TGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATGGTGGGAAACCTCTaGTACACCGCGGTGCTCACC | + |
|
Preference number: 5 (lower is better) Translates to: WMCLIITPFRVLSSLYSRMVGNL*YTAVLT Trigger: GGTGAGCACCGCGGTGTACAAGAGGTTTCCCACCAT...CCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 90 bp | TGTAAACCAGCGGAATGCCAACCCAGTCGTAACCAAATAAGAGGCTaGACCAAGAGCGGTACCGATTCATTTCAGTCATCAGTGATTGTA | + |
|
Preference number: 5 (lower is better) Translates to: CKPAECQPSRNQIRG*TKSGTDSFQSSVIV Trigger: TACAATCACTGATGACTGAAATGAATCGGTACCGCTCTTGGTGCAGCCTCTTATTTGGTTACGACTGGGTTGGCATTCCGCTGGTTTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS TCA 90 bp | GTTGCAAGATTTCCAAACCAAATGAAGGGAACCCAGTACTTCAGATaGGGCGATTTGAGGTGGTCGAATAATTTCCTCTCATCTGCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: VARFPNQMKGTQYFR*GDLRWSNNFLSSAV Trigger: GACGGCAGATGAGAGGAAATTATTCGACCACCTCAAATCGCCTCATCTGAAGTACTGGGTTCCCTTCATTTGGTTTGGAAATCTTGCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS TCA 90 bp | ACCGATTCATTTCAGTCATCAGTGATTGTAGATCAACGCTGTCTCTaGTTCTGCCTTCATTCCGGGCTTTGGTTGCAAGATTTCCAAACC | + |
|
Preference number: 5 (lower is better) Translates to: TDSFQSSVIVDQRCL*FCLHSGLWLQDFQT Trigger: GGTTTGGAAATCTTGCAACCAAAGCCCGGAATGAAGGCAGAATCAGAGACAGCGTTGATCTACAATCACTGATGACTGAAATGAATCGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | TTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCATTTCTCCAAATGCTGGCCAGCCTTCATTCCGGGCTTaGGTTGCAAGATTTCCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: FRVLSSLYSRIISPNAGQPSFRA*VARFPN Trigger: GTTTGGAAATCTTGCAACCAAAGCCCGGAATGAAGG...CTGGCCAGCATTTGGAGAAATGATCCTACTATACAAGCTACTTAGAACTCTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | CCCTGTGTGCTAGACAATGTGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTTGTCAATGCACCAGTTaGTTTCAAAGTCATCGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: PCVLDNVDVFDHNALQSSCQCTS*FQSHRH Trigger: ATGACGATGACTTTGAAACAAACTGGTGCATTGACA...AGAACTCTGAAGGGCGTTATGATCAAACACATCCACATTGTCTAGCACACAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | ATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCCATTCCGGGCTTTGGTaGCAAGATTTCCAAACCAAA | + |
|
Preference number: 5 (lower is better) Translates to: MCLIITPFRVLSSLYSRIHSGLW*QDFQTK Trigger: TTTGGTTTGGAAATCTTGCAACCAAAGCCCGGAATG...GATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | TGGATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGAGATCTTCCTCGAACTaGAACAAGTCTCTTTCAGTA | + |
|
Preference number: 5 (lower is better) Translates to: WMCLIITPFRVLSSLYSRRSSSN*NKSLSV Trigger: TACTGAAAGAGACTTGTTCAAGTTCGAGGAAGATCT...CCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACATCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS-3UTR CAA 90 bp | ATGTGTTTGATCATAACGCCCTTCAGAGTTCTAAGTAGCTTGTATAGTAGGATCAAAGGTTACTGGAATTaGTTCAGCATATCTGTCACA | + |
|
Preference number: 5 (lower is better) Translates to: MCLIITPFRVLSSLYSRIKGYWN*FSISVT Trigger: TGTGACAGATATGCTGAACAAATTCCAGTAACCTTT...GATCCTACTATACAAGCTACTTAGAACTCTGAAGGGCGTTATGATCAAACACAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 72 bp | GGGGAGGACCTCACGCTGGACTGCGGGCTCAGGCTCTaGAGCGTGCTGGTACGGCTGGTCTCCCTGATGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GEDLTLDCGLRL*SVLVRLVSLMV Trigger: CACCATCAGGGAGACCAGCCGTACCAGCACGCTGCAGAGCCTGAGCCCGCAGTCCAGCGTGAGGTCCTCCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 72 bp | GGGTCTCCAGGTGGGGTCCCTGAAGGCTCTACCTGCTaGTCAGTCCCGCTCGGCTGCACCCCGGTGAACTCG | + |
|
Preference number: 6 (lower is better) Translates to: GSPGGVPEGSTC*SVPLGCTPVNS Trigger: CGAGTTCACCGGGGTGCAGCCGAGCGGGACTGAGCAGCAGGTAGAGCCTTCAGGGACCCCACCTGGAGACCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 72 bp | GAGCTGGGCTTGGGGGTAAGAACATGGAGCTGTCGCTaGCCTGCCTGCCGAAGCTCCTCCTCCTCCTGGGGC | + |
|
Preference number: 6 (lower is better) Translates to: ELGLGVRTWSCR*PACRSSSSSWG Trigger: GCCCCAGGAGGAGGAGGAGCTTCGGCAGGCAGGCCAGCGACAGCTCCATGTTCTTACCCCCAAGCCCAGCTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 72 bp | TGGGAGCGGGATTGCTTCCGTGTGGGCGAGCCTCGGTaGGGGTTCCTGGACGGCACATCCAGCAGATCCCGA | + |
|
Preference number: 6 (lower is better) Translates to: WERDCFRVGEPR*GFLDGTSSRSR Trigger: TCGGGATCTGCTGGATGTGCCGTCCAGGAACCCCCACCGAGGCTCGCCCACACGGAAGCAATCCCGCTCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CAA 90 bp | GGTGGGGGTTCCTGGACGGCACATCCAGCAGATCCCGAGCTGGGCTaGGGGGTAAGAACATGGAGCTGTCGCTGGCCTGCCTGCCGAAGC | + |
|
Preference number: 6 (lower is better) Translates to: GGGSWTAHPADPELG*GVRTWSCRWPACRS Trigger: GCTTCGGCAGGCAGGCCAGCGACAGCTCCATGTTCTTACCCCCAAGCCCAGCTCGGGATCTGCTGGATGTGCCGTCCAGGAACCCCCACC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CAA 90 bp | GGTGGACAGTTCTCCCATGCTGGAGTGCAGCTTGGGGCTGCCCTCTaGGGAGCGGGATTGCTTCCGTGTGGGCGAGCCTCGGTGGGGGTT | + |
|
Preference number: 6 (lower is better) Translates to: GGQFSHAGVQLGAAL*GAGLLPCGRASVGV Trigger: AACCCCCACCGAGGCTCGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCACC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CCA 72 bp | ATTGCTTCCGTGTGGGCGAGCCTCGGTGGGGGTTCCTaGACGGCACATCCAGCAGATCCCGAGCTGGGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: IASVWASLGGGS*TAHPADPELGL Trigger: CAAGCCCAGCTCGGGATCTGCTGGATGTGCCGTCCAGGAACCCCCACCGAGGCTCGCCCACACGGAAGCAAT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CAA 72 bp | GCGGCGGTGATTAGGACCTCAGGGACCTGGGGCATTTaGGTAGGGGAGGACCTCACGCTGGACTGCGGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: AAVIRTSGTWGI*VGEDLTLDCGL Trigger: GAGCCCGCAGTCCAGCGTGAGGTCCTCCCCTACCAAAATGCCCCAGGTCCCTGAGGTCCTAATCACCGCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 72 bp | TGGACAGTTCTCCCATGCTGGAGTGCAGCTTGGGGCTaGCCTCTTGGGAGCGGGATTGCTTCCGTGTGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: WTVLPCWSAAWG*PLGSGIASVWA Trigger: CGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CAA 72 bp | TCCTGGACGGCACATCCAGCAGATCCCGAGCTGGGCTaGGGGGTAAGAACATGGAGCTGTCGCTGGCCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SWTAHPADPELG*GVRTWSCRWPA Trigger: GGCAGGCCAGCGACAGCTCCATGTTCTTACCCCCAAGCCCAGCTCGGGATCTGCTGGATGTGCCGTCCAGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS CAA 90 bp | CTGGTCTCCCTGATGGTGGACAGTTCTCCCATGCTGGAGTGCAGCTaGGGGCTGCCCTCTTGGGAGCGGGATTGCTTCCGTGTGGGCGAG | + |
|
Preference number: 6 (lower is better) Translates to: LVSLMVDSSPMLECS*GLPSWERDCFRVGE Trigger: CTCGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCACCATCAGGGAGACCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 72 bp | GTCTCCCTGATGGTGGACAGTTCTCCCATGCTGGAGTaGAGCTTGGGGCTGCCCTCTTGGGAGCGGGATTGC | + |
|
Preference number: 6 (lower is better) Translates to: VSLMVDSSPMLE*SLGLPSWERDC Trigger: GCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCACCATCAGGGAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
||
| CDS GCA 72 bp | CCTGAAGGCTCTACCTGCTGCTCAGTCCCGCTCGGCTaGACCCCGGTGAACTCGAGGCTCAAGATGGAGGTA | + |
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Preference number: 6 (lower is better) Translates to: PEGSTCCSVPLG*TPVNSRLKMEV Trigger: TACCTCCATCTTGAGCCTCGAGTTCACCGGGGTGCAGCCGAGCGGGACTGAGCAGCAGGTAGAGCCTTCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 90 bp | AGTCCTCTGCGGGGAAGTTGGACCCGGACAGCCCCATTTGGATCGTaGAGCCCAGAAAGGACGGTATGCAGTAGTCGGCAGCCGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SPLRGSWTRTAPFGS*SPERTVCSSRQPPV Trigger: CACTGGCGGCTGCCGACTACTGCATACCGTCCTTTCTGGGCTCAACGATCCAAATGGGGCTGTCCGGGTCCAACTTCCCCGCAGAGGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | GTCCTTCTGAGCAGGCGCCCATGCTGGTCGCTCCCGTaGACACTGCTGGAAATGAGGAGCATCAGCCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VLLSRRPCWSLP*TLLEMRSISLS Trigger: AGACAGGCTGATGCTCCTCATTTCCAGCAGTGTCCACGGGAGCGACCAGCATGGGCGCCTGCTCAGAAGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 72 bp | GGGCTGCCAGGATGCTCGTGGGTACTCAGGAAGCGCTaGACCCTCCTCATCACTGAGTGCCGGTTTCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: GLPGCSWVLRKR*TLLITECRFPC Trigger: ACACGGAAACCGGCACTCAGTGATGAGGAGGGTCAAGCGCTTCCTGAGTACCCACGAGCATCCTGGCAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 72 bp | CTGATGGTGGACAGTTCTCCCATGCTGGAGTGCAGCTaGGGGCTGCCCTCTTGGGAGCGGGATTGCTTCCGT | + |
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Preference number: 6 (lower is better) Translates to: LMVDSSPMLECS*GLPSWERDCFR Trigger: ACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACTGTCCACCATCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS TCA 72 bp | GCCCATGCTGGTCGCTCCCGTGGACACTGCTGGAAATaGGGAGCATCAGCCTGTCTGGCCAAGGCAGATTCA | + |
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Preference number: 6 (lower is better) Translates to: AHAGRSRGHCWK*GASACLAKADS Trigger: TGAATCTGCCTTGGCCAGACAGGCTGATGCTCCTCATTTCCAGCAGTGTCCACGGGAGCGACCAGCATGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS TCA 72 bp | GGGGAAGTTGGACCCGGACAGCCCCATTTGGATCGTTaGGCCCAGAAAGGACGGTATGCAGTAGTCGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GEVGPGQPHLDR*AQKGRYAVVGS Trigger: GCTGCCGACTACTGCATACCGTCCTTTCTGGGCTCAACGATCCAAATGGGGCTGTCCGGGTCCAACTTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS TCA 72 bp | GGCTGCCAGGATGCTCGTGGGTACTCAGGAAGCGCTTaGCCCTCCTCATCACTGAGTGCCGGTTTCCGTGTT | + |
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Preference number: 6 (lower is better) Translates to: GCQDARGYSGSA*PSSSLSAGFRV Trigger: AACACGGAAACCGGCACTCAGTGATGAGGAGGGTCAAGCGCTTCCTGAGTACCCACGAGCATCCTGGCAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | CGGTATGCAGTAGTCGGCAGCCGCCAGTGTGTACGGTaGCCGGGCAGCAGAATCGTCCCAGTAAATGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: RYAVVGSRQCVR*PGSRIVPVNVL Trigger: AAGGACATTTACTGGGACGATTCTGCTGCCCGGCCACCGTACACACTGGCGGCTGCCGACTACTGCATACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 72 bp | CGGGGAAGTTGGACCCGGACAGCCCCATTTGGATCGTaGAGCCCAGAAAGGACGGTATGCAGTAGTCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: RGSWTRTAPFGS*SPERTVCSSRQ Trigger: CTGCCGACTACTGCATACCGTCCTTTCTGGGCTCAACGATCCAAATGGGGCTGTCCGGGTCCAACTTCCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS GCA 72 bp | GTTTCCGTGTTTCTCGTAGTTCCACAGCCAGTCCTCTaGGGGGAAGTTGGACCCGGACAGCCCCATTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: VSVFLVVPQPVL*GEVGPGQPHLD Trigger: ATCCAAATGGGGCTGTCCGGGTCCAACTTCCCCGCAGAGGACTGGCTGTGGAACTACGAGAAACACGGAAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | CAGGATCTGGACCTAAGTTTCCCAGCGAGGTGTGCCTaGACTCCAGAAACTCTGGCAGGCTCCACCTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: QDLDLSFPARCA*TPETLAGSTFW Trigger: CCAAAAGGTGGAGCCTGCCAGAGTTTCTGGAGTCCAGGCACACCTCGCTGGGAAACTTAGGTCCAGATCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | CGTACAGATCCAAGTCATGTCCTACGTAGCCTTTGGTaGGATCCAGGAACTGCCTTCCGATCAGGCACGCAA | + |
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Preference number: 6 (lower is better) Translates to: RTDPSHVLRSLW*DPGTAFRSGTQ Trigger: TTGCGTGCCTGATCGGAAGGCAGTTCCTGGATCCCACCAAAGGCTACGTAGGACATGACTTGGATCTGTACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | GAACGTACAGATCCAAGTCATGTCCTACGTAGCCTTTaGTGGGATCCAGGAACTGCCTTCCGATCAGGCACG | + |
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Preference number: 6 (lower is better) Translates to: ERTDPSHVLRSL*WDPGTAFRSGT Trigger: CGTGCCTGATCGGAAGGCAGTTCCTGGATCCCACCAAAGGCTACGTAGGACATGACTTGGATCTGTACGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | TTGAACAAGTCTCTTTCAGTACTGGCTGAAGTAGTCTaGGGATTGGGGTCTCCAGGTGGGGTCCCTGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LNKSLSVLAEVV*GLGSPGGVPEG Trigger: GCCTTCAGGGACCCCACCTGGAGACCCCAATCCCCAGACTACTTCAGCCAGTACTGAAAGAGACTTGTTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CCA 72 bp | GCCTGGACTCCAGAAACTCTGGCAGGCTCCACCTTTTaGGAAATCTGTCATCCTCTAGATCTTCCTCGAACT | + |
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Preference number: 6 (lower is better) Translates to: AWTPETLAGSTF*EICHPLDLPRT Trigger: AGTTCGAGGAAGATCTAGAGGATGACAGATTTCCCAAAAGGTGGAGCCTGCCAGAGTTTCTGGAGTCCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 72 bp | TGCCTGGACTCCAGAAACTCTGGCAGGCTCCACCTTTaGGGAAATCTGTCATCCTCTAGATCTTCCTCGAAC | + |
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Preference number: 6 (lower is better) Translates to: CLDSRNSGRLHL*GNLSSSRSSSN Trigger: GTTCGAGGAAGATCTAGAGGATGACAGATTTCCCAAAAGGTGGAGCCTGCCAGAGTTTCTGGAGTCCAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS GCA 72 bp | GCGGAATGCCAACCCAGTCGTAACCAAATAAGAGGCTaGACCAAGAGCGGTACCGATTCATTTCAGTCATCA | + |
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Preference number: 6 (lower is better) Translates to: AECQPSRNQIRG*TKSGTDSFQSS Trigger: TGATGACTGAAATGAATCGGTACCGCTCTTGGTGCAGCCTCTTATTTGGTTACGACTGGGTTGGCATTCCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 72 bp | TCAACGCTGTCTCTGATTCTGCCTTCATTCCGGGCTTaGGTTGCAAGATTTCCAAACCAAATGAAGGGAACC | + |
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Preference number: 6 (lower is better) Translates to: STLSLILPSFRA*VARFPNQMKGT Trigger: GGTTCCCTTCATTTGGTTTGGAAATCTTGCAACCAAAGCCCGGAATGAAGGCAGAATCAGAGACAGCGTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 90 bp | GATTGTAGATCAACGCTGTCTCTGATTCTGCCTTCATTCCGGGCTTaGGTTGCAAGATTTCCAAACCAAATGAAGGGAACCCAGTACTTC | + |
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Preference number: 6 (lower is better) Translates to: DCRSTLSLILPSFRA*VARFPNQMKGTQYF Trigger: GAAGTACTGGGTTCCCTTCATTTGGTTTGGAAATCTTGCAACCAAAGCCCGGAATGAAGGCAGAATCAGAGACAGCGTTGATCTACAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS TCA 72 bp | TTTCCAAACCAAATGAAGGGAACCCAGTACTTCAGATaGGGCGATTTGAGGTGGTCGAATAATTTCCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: FPNQMKGTQYFR*GDLRWSNNFLS Trigger: TGAGAGGAAATTATTCGACCACCTCAAATCGCCTCATCTGAAGTACTGGGTTCCCTTCATTTGGTTTGGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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| CDS CAA 72 bp | TTGGGAAATCTGTCATCCTCTAGATCTTCCTCGAACTaGAACAAGTCTCTTTCAGTACTGGCTGAAGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: LGNLSSSRSSSN*NKSLSVLAEVV Trigger: GACTACTTCAGCCAGTACTGAAAGAGACTTGTTCAAGTTCGAGGAAGATCTAGAGGATGACAGATTTCCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020378.5 |
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