Pregenerated sensors for BEST2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052819Ensembl transcript IDs: ENSMUST00000059072.6, ENSMUST00000209322.2, ENSMUST00000209421.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CGAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGAGCTTGTGCAGACCCTaGTGGTCGCCAGCATGTCTA | + |
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Preference number: 2 (lower is better) Translates to: RREEPKVRSEDQQRPQVRSLCRP*WSPACL Trigger: TAGACATGCTGGCGACCACCAGGGTCTGCACAAGCT...CCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| 3UTR-3UTR CCA 90 bp | CGAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGAAACCTCTTAAAGAGTaGGGGGTTGGGGGTGAGGGA | + |
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Preference number: 2 (lower is better) Translates to: RREEPKVRSEDQQRPQVRKPLKE*GVGGEG Trigger: TCCCTCACCCCCAACCCCCCACTCTTTAAGAGGTTT...CCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCAACCACCAGCCCCAGTaGGAGATTCCGCTGGTCAAA | + |
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Preference number: 2 (lower is better) Translates to: SEDQQRPQVRWWCLEGKTNHQPQ*EIPLVK Trigger: TTTGACCAGCGGAATCTCCCACTGGGGCTGGTGGTT...GGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| 3UTR-3UTR CCA 90 bp | CGAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGACAGCTGGGAGAATATaGACCCCTAAAACCACCAGC | + |
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Preference number: 2 (lower is better) Translates to: RREEPKVRSEDQQRPQVRTAGRI*TPKTTS Trigger: GCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGT...CCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| 3UTR-3UTR CCA 90 bp | AGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAGCTTGTGCAGACCCTaGTGGTCGCCAGCATGTCTA | + |
|
Preference number: 2 (lower is better) Translates to: RPTEATGQVVVFGRQNLLSLCRP*WSPACL Trigger: TAGACATGCTGGCGACCACCAGGGTCTGCACAAGCT...TAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAGTAGCTTGTGCAGACCCTaGTGGTCGCCAGCATGTCTA | + |
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Preference number: 2 (lower is better) Translates to: TEATGQVVVFGRQNLLKSSLCRP*WSPACL Trigger: TAGACATGCTGGCGACCACCAGGGTCTGCACAAGCT...ACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| 3UTR TCA 72 bp | ACCACCAGCCCCAGTGGGAGATTCCGCTGGTCAAAATaGGTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: TTSPSGRFRWSK*VGRLSEGLASL Trigger: CAAGCTAGCTAGGCCTTCAGAAAGCCGACCTACTCATTTTGACCAGCGGAATCTCCCACTGGGGCTGGTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | GTGAGGGAAGCAGCAACAGCTGGGAGAATATGGACCCCTAAAACCACCAGCCCCGCCCTGCGTAGCGCATaGGCGTGCGCCGGTAGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: VREAATAGRIWTPKTTSPALRSA*ACAGRG Trigger: GCCTCTACCGGCGCACGCTCATGCGCTACGCAGGGC...GGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTCACCGCGGAGAGCCCTaGGTAGCGCATGAGCGTGCG | + |
|
Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACHRGEP*VAHERA Trigger: CGCACGCTCATGCGCTACGCAGGGCTCTCCGCGGTG...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAGCCCTGCGTAGCGCATaGGCGTGCGCCGGTAGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKAALRSA*ACAGRG Trigger: GCCTCTACCGGCGCACGCTCATGCGCTACGCAGGGC...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | GTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCAGGGTCTAGGAACTaGCGGCCGATGAGGCAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: VGRLSEGLASLCRPWWSPAGSRN*RPMRQA Trigger: GGCTTGCCTCATCGGCCGTCAGTTCCTAGACCCTGC...TGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | GTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCACACAGCTGGCAGCAGTaGAGGCCTCTGACACGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VGRLSEGLASLCRPWWSPHSWQQ*RPLTRS Trigger: GCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTG...TGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | GGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACACTGTTGTCGCGGATaGGCCCCTCTCGCCGCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GQKTNRGHRSGGGVWKAKHCCRG*APLAAP Trigger: AGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTG...TTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | GTGAGGGAAGCAGCAACAGCTGGGAGAATATGGACCCCTAAAACCACCAGCCCCAGGCGGCTCAGGACATaGGGGAGACTCCAGCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VREAATAGRIWTPKTTSPRRLRT*GRLQLR Trigger: CCTGAGCTGGAGTCTCCCGCATGTCCTGAGCCGCCT...GGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | CGAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGCTGCACAGCCACAGCTaGCAGCAGTGGAGGCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: RREEPKVRSEDQQRPQVRLHSHS*QQWRPL Trigger: CAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAG...CCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | GAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTTGGAAGGAGGGCTGCTaGAGCAGGAAAGCGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: EGKNPRYGQKTNRGHRSGWKEGC*SRKAVA Trigger: GGCCACCGCTTTCCTGCTTCAGCAGCCCTCCTTCCA...ACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | ACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAATGGAAGGAGGGCTGCTaGAGCAGGAAAGCGGTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: TVRRPTEATGQVVVFGRQWKEGC*SRKAVA Trigger: GGCCACCGCTTTCCTGCTTCAGCAGCCCTCCTTCCA...TTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | AGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTACACCGCGGAGAGCCCTaGGTAGCGCATGAGCGTGCG | + |
|
Preference number: 4 (lower is better) Translates to: RPTEATGQVVVFGRQNLLHRGEP*VAHERA Trigger: CGCACGCTCATGCGCTACGCAGGGCTCTCCGCGGTG...TAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | ACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAACACAGCTGGCAGCAGTaGAGGCCTCTGACACGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TVRRPTEATGQVVVFGRQHSWQQ*RPLTRS Trigger: GCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTG...TTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCACACAGCTGGCAGCAGTaGAGGCCTCTGACACGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKAHSWQQ*RPLTRS Trigger: GCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTG...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | TCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCGCAGGGTCTAGGAACTaGCGGCCGATGAGGCAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SEDQQRPQVRWWCLEGKTAGSRN*RPMRQA Trigger: GGCTTGCCTCATCGGCCGTCAGTTCCTAGACCCTGC...GGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | GGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAATGGAAGGAGGGCTGCTaGAGCAGGAAAGCGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GQKTNRGHRSGGGVWKAKWKEGC*SRKAVA Trigger: GGCCACCGCTTTCCTGCTTCAGCAGCCCTCCTTCCA...TTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | ACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAGTCACTGTTGTCGCGGATaGGCCCCTCTCGCCGCGCCT | + |
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Preference number: 4 (lower is better) Translates to: TEATGQVVVFGRQNLLKSHCCRG*APLAAP Trigger: AGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTG...ACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTTCCAGCCGCTGGAACTaGATGTCCTCTTTAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACSSRWN*MSSLAS Trigger: GCTGGCTAAAGAGGACATGCAGTTCCAGCGGCTGGA...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | TCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCAGGCGGCTCAGGACATaGGGGAGACTCCAGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: SEDQQRPQVRWWCLEGKTRRLRT*GRLQLR Trigger: CCTGAGCTGGAGTCTCCCGCATGTCCTGAGCCGCCT...GGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTGGCATGCATAGGTACTaGTTCCACCAGCGATGCACC | + |
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Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACGMHRY*FHQRCT Trigger: GGTGCATCGCTGGTGGAACCAGTACCTATGCATGCC...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | GTGAGGGAAGCAGCAACAGCTGGGAGAATATGGACCCCTAAAACCACCAGCCCCAGCAGTGGAGGCCTCTaGCACGCAGCTGTTTTTACG | + |
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Preference number: 4 (lower is better) Translates to: VREAATAGRIWTPKTTSPSSGGL*HAAVFT Trigger: CGTAAAAACAGCTGCGTGTCAGAGGCCTCCACTGCT...GGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | ACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAACGTCCGGCAGAGGCATaGATAGGTACTGGTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: TVRRPTEATGQVVVFGRQRPAEA*IGTGST Trigger: GGTGGAACCAGTACCTATGCATGCCTCTGCCGGACG...TTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | GAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTCGTCCGGCAGAGGCATaGATAGGTACTGGTTCCACC | + |
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Preference number: 4 (lower is better) Translates to: EGKNPRYGQKTNRGHRSGRPAEA*IGTGST Trigger: GGTGGAACCAGTACCTATGCATGCCTCTGCCGGACG...ACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | GTGAGGGAAGCAGCAACAGCTGGGAGAATATGGACCCCTAAAACCACCAGCCCCGCGCTATATCAAAGGTaGAGCCCTGGAAGGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VREAATAGRIWTPKTTSPALYQR*SPGRRA Trigger: AGCCCTCCTTCCAGGGCTCCACCTTTGATATAGCGC...GGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | AGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTACTGCACAGCCACAGCTaGCAGCAGTGGAGGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RPTEATGQVVVFGRQNLLLHSHS*QQWRPL Trigger: CAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAG...TAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | ACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAGTGCAGGGTCTAGGAACTaGCGGCCGATGAGGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: TEATGQVVVFGRQNLLKSAGSRN*RPMRQA Trigger: GGCTTGCCTCATCGGCCGTCAGTTCCTAGACCCTGC...ACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | ACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAGCAGTGGAGGCCTCTaGCACGCAGCTGTTTTTACG | + |
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Preference number: 4 (lower is better) Translates to: TVRRPTEATGQVVVFGRQSSGGL*HAAVFT Trigger: CGTAAAAACAGCTGCGTGTCAGAGGCCTCCACTGCT...TTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | GTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAATGAGGCTGGCGTACTaGTCGCAGTATATGACAAGC | + |
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Preference number: 4 (lower is better) Translates to: VGRLSEGLASLCRPWWSPMRLAY*SQYMTS Trigger: GCTTGTCATATACTGCGACCAGTACGCCAGCCTCAT...TGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAGCGCTATATCAAAGGTaGAGCCCTGGAAGGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKAALYQR*SPGRRA Trigger: AGCCCTCCTTCCAGGGCTCCACCTTTGATATAGCGC...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | GAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTACGCCGTCCAGCCGCTaGAACTGCATGTCCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: EGKNPRYGQKTNRGHRSGTPSSR*NCMSSL Trigger: TAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGT...ACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAACGCCGTCCAGCCGCTaGAACTGCATGTCCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKATPSSR*NCMSSL Trigger: TAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGT...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR CCA 90 bp | ACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAACTGCACAGCCACAGCTaGCAGCAGTGGAGGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TNRGHRSGGGVWKAKPLKLHSHS*QQWRPL Trigger: CAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAG...TTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTACTGGTCGCAGTATATaGCAAGCTTCTCGAAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACTGRSI*QASRSS Trigger: GCTACTTCGAGAAGCTTGTCATATACTGCGACCAGT...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR TCA 90 bp | GTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAACTGGTCGCAGTATATaGCAAGCTTCTCGAAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: VGRLSEGLASLCRPWWSPTGRSI*QASRSS Trigger: GCTACTTCGAGAAGCTTGTCATATACTGCGACCAGT...TGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | GTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGAAGTAGCTGTACACTaGGATAGTGACTACCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: VGRLSEGLASLCRPWWSPEVAVH*DSDYLG Trigger: ACCCAGGTAGTCACTATCGCAGTGTACAGCTACTTC...TGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS-3UTR GCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTGAAGTAGCTGTACACTaGGATAGTGACTACCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACEVAVH*DSDYLG Trigger: ACCCAGGTAGTCACTATCGCAGTGTACAGCTACTTC...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTGTTAATAAGCTGCTCTaGTACCTTAAGCCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACVNKLL*YLKPAS Trigger: GCTGGCTGGCTTAAGGTAGCAGAGCAGCTTATTAAC...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CCA 90 bp | CGAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGATGAGGCTGGCGTACTaGTCGCAGTATATGACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: RREEPKVRSEDQQRPQVRMRLAY*SQYMTS Trigger: GCTTGTCATATACTGCGACCAGTACGCCAGCCTCAT...CCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CCA 90 bp | TCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCGGCATGCATAGGTACTaGTTCCACCAGCGATGCACC | + |
|
Preference number: 4 (lower is better) Translates to: SEDQQRPQVRWWCLEGKTGMHRY*FHQRCT Trigger: GGTGCATCGCTGGTGGAACCAGTACCTATGCATGCC...GGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CCA 90 bp | GGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAAACGCCGTCCAGCCGCTaGAACTGCATGTCCTCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: GQKTNRGHRSGGGVWKAKTPSSR*NCMSSL Trigger: TAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGT...TTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR TCA 90 bp | AGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAGCAGTGGAGGCCTCTaGCACGCAGCTGTTTTTACG | + |
|
Preference number: 4 (lower is better) Translates to: RPTEATGQVVVFGRQNLLSSGGL*HAAVFT Trigger: CGTAAAAACAGCTGCGTGTCAGAGGCCTCCACTGCT...TAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | ACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAGTCGTCCGGCAGAGGCATaGATAGGTACTGGTTCCACC | + |
|
Preference number: 4 (lower is better) Translates to: TEATGQVVVFGRQNLLKSRPAEA*IGTGST Trigger: GGTGGAACCAGTACCTATGCATGCCTCTGCCGGACG...ACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | GTGAGGGAAGCAGCAACAGCTGGGAGAATATGGACCCCTAAAACCACCAGCCCCGTTAATAAGCTGCTCTaGTACCTTAAGCCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VREAATAGRIWTPKTTSPVNKLL*YLKPAS Trigger: GCTGGCTGGCTTAAGGTAGCAGAGCAGCTTATTAAC...GGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAATGAGGCTGGCGTACTaGTCGCAGTATATGACAAGC | + |
|
Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKAMRLAY*SQYMTS Trigger: GCTTGTCATATACTGCGACCAGTACGCCAGCCTCAT...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CCA 90 bp | AGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAGCGCTATATCAAAGGTaGAGCCCTGGAAGGAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RPTEATGQVVVFGRQNLLALYQR*SPGRRA Trigger: AGCCCTCCTTCCAGGGCTCCACCTTTGATATAGCGC...TAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR TCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAACTGGTCGCAGTATATaGCAAGCTTCTCGAAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKATGRSI*QASRSS Trigger: GCTACTTCGAGAAGCTTGTCATATACTGCGACCAGT...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | ACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAGTTAATAAGCTGCTCTaGTACCTTAAGCCAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TVRRPTEATGQVVVFGRQVNKLL*YLKPAS Trigger: GCTGGCTGGCTTAAGGTAGCAGAGCAGCTTATTAAC...TTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTAAAGGGTTAATAAGCTaGTCTGCTACCTTAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RLSEGLASLCRPWWSPACKGLIS*SATLSQ Trigger: CTGGCTTAAGGTAGCAGAGCAGCTTATTAACCCTTT...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | ACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAATCCAGCCGCTGGAACTaGATGTCCTCTTTAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TNRGHRSGGGVWKAKPLKSSRWN*MSSLAS Trigger: GCTGGCTAAAGAGGACATGCAGTTCCAGCGGCTGGA...TTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | ACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAGTTCCAGCCGCTGGAACTaGATGTCCTCTTTAGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: TEATGQVVVFGRQNLLKSSSRWN*MSSLAS Trigger: GCTGGCTAAAGAGGACATGCAGTTCCAGCGGCTGGA...ACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | TACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAAGGGTTAATAAGCTaGTCTGCTACCTTAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: YGQKTNRGHRSGGGVWKAKGLIS*SATLSQ Trigger: CTGGCTTAAGGTAGCAGAGCAGCTTATTAACCCTTT...TGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | ACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAAGTAGCTGTACACTaGGATAGTGACTACCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: TNRGHRSGGGVWKAKPLKEVAVH*DSDYLG Trigger: ACCCAGGTAGTCACTATCGCAGTGTACAGCTACTTC...TTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR GCA 90 bp | ACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAAGAGTAAAGGGTTAATAAGCTaGTCTGCTACCTTAAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: TEATGQVVVFGRQNLLKSKGLIS*SATLSQ Trigger: CTGGCTTAAGGTAGCAGAGCAGCTTATTAACCCTTT...ACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS TCA 90 bp | ACAGAACCCGCCCCCGCCGGCAGGAGGCGCTGCAGAAAGTCCCCGTaGACCTCTCCCAGCGGGCCATCCACGCCGTCCAGCCGCTGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: TEPAPAGRRRCRKSP*TSPSGPSTPSSRWN Trigger: GTTCCAGCGGCTGGACGGCGTGGATGGCCCGCTGGGAGAGGTTCACGGGGACTTTCTGCAGCGCCTCCTGCCGGCGGGGGCGGGTTCTGT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 90 bp | CGCCTCCGCCATCCGCCGCGCCTGCACAGCCACAGCTGGCAGCAGTaGAGGCCTCTGACACGCAGCTGTTTTTACGCCTTAACAGCGACA | + |
|
Preference number: 5 (lower is better) Translates to: RLRHPPRLHSHSWQQ*RPLTRSCFYALTAT Trigger: TGTCGCTGTTAAGGCGTAAAAACAGCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAGGCGCGGCGGATGGCGGAGGCG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS TCA 90 bp | GGCCTCGATCGTCTCGCCCATGCACGGTGCCAGCCACTATGCACATaGGTGCGTCCGGCAGAGGCATGCATAGGTACTGGTTCCACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: GLDRLAHARCQPLCT*VRPAEACIGTGSTS Trigger: GCTGGTGGAACCAGTACCTATGCATGCCTCTGCCGGACGCACTCATGTGCATAGTGGCTGGCACCGTGCATGGGCGAGACGATCGAGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS GCA 90 bp | CATTCAGCTCCTCTAGTAGCAACTTTAGGGCACTGTTGTCGCGGATaGGCCCCTCTCGCCGCGCCTGCGCTGCCAGGCTCGAGAACCATA | + |
|
Preference number: 5 (lower is better) Translates to: HSAPLVATLGHCCRG*APLAAPALPGSRTI Trigger: TATGGTTCTCGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTTGCTACTAGAGGAGCTGAATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | GTAGGTCGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAAACTTTAGGGCACTGTaGTCGCGGATGCGCCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: VGRLSEGLASLCRPWWSPNFRAL*SRMRPS Trigger: AGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTT...TGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | CGGCTTTCTGAAGGCCTAGCTAGCTTGTGCAGACCCTGGTGGTCGCCAGCATGTAAGTTCTCGAACTTCTaGCGCTCTTCTCGGGTCATA | + |
|
Preference number: 5 (lower is better) Translates to: RLSEGLASLCRPWWSPACKFSNF*RSSRVI Trigger: TATGACCCGAGAAGAGCGCAAGAAGTTCGAGAACTT...ACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | AGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAACCTCTTAAACTTTAGGGCACTGTaGTCGCGGATGCGCCCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RPTEATGQVVVFGRQNLLNFRAL*SRMRPS Trigger: AGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTT...TAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | GTGAGGGAAGCAGCAACAGCTGGGAGAATATGGACCCCTAAAACCACCAGCCCCCGGTCAATAAGAAAGTaGGTCTCAAAGTCGTCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: VREAATAGRIWTPKTTSPRSIRK*VSKSSS Trigger: CGACGACGACTTTGAGACCAACTTTCTTATTGACCG...GGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 90 bp | GCGCGCGAGCTTCTGCTGCATCCCAGTATAGATCTTTCTCCAGCATaGCCAAGTCGTCATACATCTCATCTACAGCTAGCATGGACACCT | + |
|
Preference number: 5 (lower is better) Translates to: ARELLLHPSIDLSPA*PSRHTSHLQLAWTP Trigger: AGGTGTCCATGCTAGCTGTAGATGAGATGTATGACGACTTGGCCATGCTGGAGAAAGATCTATACTGGGATGCAGCAGAAGCTCGCGCGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | GAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTAAGTTCTCGAACTTCTaGCGCTCTTCTCGGGTCATA | + |
|
Preference number: 5 (lower is better) Translates to: EGKNPRYGQKTNRGHRSGKFSNF*RSSRVI Trigger: TATGACCCGAGAAGAGCGCAAGAAGTTCGAGAACTT...ACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | ACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAACGGTCAATAAGAAAGTaGGTCTCAAAGTCGTCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: TVRRPTEATGQVVVFGRQRSIRK*VSKSSS Trigger: CGACGACGACTTTGAGACCAACTTTCTTATTGACCG...TTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | GAAGGGAAGAACCCAAGGTACGGTCAGAAGACCAACAGAGGCCACAGGTCAGGTCGGTCAATAAGAAAGTaGGTCTCAAAGTCGTCGTCG | + |
|
Preference number: 5 (lower is better) Translates to: EGKNPRYGQKTNRGHRSGRSIRK*VSKSSS Trigger: CGACGACGACTTTGAGACCAACTTTCTTATTGACCG...ACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS-3UTR CAA 90 bp | GGTCAGAAGACCAACAGAGGCCACAGGTCAGGTGGTGGTGTTTGGAAGGCAAAAAAGTTCTCGAACTTCTaGCGCTCTTCTCGGGTCATA | + |
|
Preference number: 5 (lower is better) Translates to: GQKTNRGHRSGGGVWKAKKFSNF*RSSRVI Trigger: TATGACCCGAGAAGAGCGCAAGAAGTTCGAGAACTT...TTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACC 51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 90 bp | AACTTCTTGCGCTCTTCTCGGGTCATAAATCCAGCCTCGACCACGTaGTCTATAGTGGGGAACCGTTTGAAGACTGCTGTGCTAACAGAA | + |
|
Preference number: 5 (lower is better) Translates to: NFLRSSRVINPASTT*SIVGNRLKTAVLTE Trigger: TTCTGTTAGCACAGCAGTCTTCAAACGGTTCCCCACTATAGACCACGTGGTCGAGGCTGGATTTATGACCCGAGAAGAGCGCAAGAAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS GCA 72 bp | GCACTGTTGTCGCGGATGCGCCCCTCTCGCCGCGCCTaGGCTGCCAGGCTCGAGAACCATACGCAGGGCACC | + |
|
Preference number: 6 (lower is better) Translates to: ALLSRMRPSRRA*AARLENHTQGT Trigger: GGTGCCCTGCGTATGGTTCTCGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS GCA 72 bp | GTTGTCGCGGATGCGCCCCTCTCGCCGCGCCTGCGCTaGCAGGCTCGAGAACCATACGCAGGGCACCCAGTA | + |
|
Preference number: 6 (lower is better) Translates to: VVADAPLSPRLR*QAREPYAGHPV Trigger: TACTGGGTGCCCTGCGTATGGTTCTCGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 72 bp | CGCCTCCGCCATCCGCCGCGCCTGCACAGCCACAGCTaGCAGCAGTGGAGGCCTCTGACACGCAGCTGTTTT | + |
|
Preference number: 6 (lower is better) Translates to: RLRHPPRLHSHS*QQWRPLTRSCF Trigger: AAAACAGCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAGGCGCGGCGGATGGCGGAGGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS GCA 72 bp | GCTAACAGAACGAAGGATCAGCACCGCGGAGAGCCCTaGGTAGCGCATGAGCGTGCGCCGGTAGAGGCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: ANRTKDQHRGEP*VAHERAPVEAA Trigger: GGCCGCCTCTACCGGCGCACGCTCATGCGCTACGCAGGGCTCTCCGCGGTGCTGATCCTTCGTTCTGTTAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS GCA 72 bp | CCTCTAGTAGCAACTTTAGGGCACTGTTGTCGCGGATaGGCCCCTCTCGCCGCGCCTGCGCTGCCAGGCTCG | + |
|
Preference number: 6 (lower is better) Translates to: PLVATLGHCCRG*APLAAPALPGS Trigger: CGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTTGCTACTAGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 72 bp | AGCCCTGGAAGGAGGGCTGCTGAAGCAGGAAAGCGGTaGCCGCGGTGTAGGGCGCGCGAGCTTCTGCTGCAT | + |
|
Preference number: 6 (lower is better) Translates to: SPGRRAAEAGKR*PRCRARELLLH Trigger: ATGCAGCAGAAGCTCGCGCGCCCTACACCGCGGCCACCGCTTTCCTGCTTCAGCAGCCCTCCTTCCAGGGCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 72 bp | CTCCAGCTCAGGCTCCCGCAGGCTGGGGTCAAGCAATaGGTCTCCACAACCGCACTCAACGCCTCCGCCATC | + |
|
Preference number: 6 (lower is better) Translates to: LQLRLPQAGVKQ*VSTTALNASAI Trigger: GATGGCGGAGGCGTTGAGTGCGGTTGTGGAGACCCATTGCTTGACCCCAGCCTGCGGGAGCCTGAGCTGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CAA 90 bp | CTCCGAAACACATTCAGCTCCTCTAGTAGCAACTTTAGGGCACTGTaGTCGCGGATGCGCCCCTCTCGCCGCGCCTGCGCTGCCAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: LRNTFSSSSSNFRAL*SRMRPSRRACAARL Trigger: GAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTTGCTACTAGAGGAGCTGAATGTGTTTCGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS CCA 72 bp | CATCCGCCGCGCCTGCACAGCCACAGCTGGCAGCAGTaGAGGCCTCTGACACGCAGCTGTTTTTACGCCTTA | + |
|
Preference number: 6 (lower is better) Translates to: HPPRLHSHSWQQ*RPLTRSCFYAL Trigger: TAAGGCGTAAAAACAGCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAGGCGCGGCGGATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
||
| CDS TCA 72 bp | CGTCTCGCCCATGCACGGTGCCAGCCACTATGCACATaGGTGCGTCCGGCAGAGGCATGCATAGGTACTGGT | + |
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Preference number: 6 (lower is better) Translates to: RLAHARCQPLCT*VRPAEACIGTG Trigger: ACCAGTACCTATGCATGCCTCTGCCGGACGCACTCATGTGCATAGTGGCTGGCACCGTGCATGGGCGAGACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS GCA 72 bp | CCCAGCGGGCCATCCACGCCGTCCAGCCGCTGGAACTaGATGTCCTCTTTAGCCAGCGCTATATCAAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PSGPSTPSSRWN*MSSLASAISKV Trigger: CACCTTTGATATAGCGCTGGCTAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGTGGATGGCCCGCTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS CCA 72 bp | ACCTCTCCCAGCGGGCCATCCACGCCGTCCAGCCGCTaGAACTGCATGTCCTCTTTAGCCAGCGCTATATCA | + |
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Preference number: 6 (lower is better) Translates to: TSPSGPSTPSSR*NCMSSLASAIS Trigger: TGATATAGCGCTGGCTAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGTGGATGGCCCGCTGGGAGAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS CAA 72 bp | ACATTCAGCTCCTCTAGTAGCAACTTTAGGGCACTGTaGTCGCGGATGCGCCCCTCTCGCCGCGCCTGCGCT | + |
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Preference number: 6 (lower is better) Translates to: TFSSSSSNFRAL*SRMRPSRRACA Trigger: AGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTTGCTACTAGAGGAGCTGAATGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS GCA 72 bp | ACGGCCGATGAGGCAAGCCAAGAAGTAGCTGTACACTaGGATAGTGACTACCTGGGTGTAGACGAGGGGTAT | + |
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Preference number: 6 (lower is better) Translates to: TADEASQEVAVH*DSDYLGVDEGY Trigger: ATACCCCTCGTCTACACCCAGGTAGTCACTATCGCAGTGTACAGCTACTTCTTGGCTTGCCTCATCGGCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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| CDS CCA 72 bp | CTTCTGCTGCATCCCAGTATAGATCTTTCTCCAGCATaGCCAAGTCGTCATACATCTCATCTACAGCTAGCA | + |
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Preference number: 6 (lower is better) Translates to: LLLHPSIDLSPA*PSRHTSHLQLA Trigger: TGCTAGCTGTAGATGAGATGTATGACGACTTGGCCATGCTGGAGAAAGATCTATACTGGGATGCAGCAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059072.6 ENSMUST00000209322.2 ENSMUST00000209421.2 |
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