Pregenerated sensors for BEST1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037418Ensembl transcript IDs: ENSMUST00000117346.2, ENSMUST00000235983.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGTTACATGCTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTaGTTGTGTGCCTTTGACTGGGTCAGTGCCCTGCTGGGCATCCTT | + |
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Preference number: 1 (lower is better) Translates to: ELHARLSWEHTPGCR*LCAFDWVSALLGIL Trigger: AAGGATGCCCAGCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAGCATGTAACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| 3UTR CAA 90 bp | GACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTaGACTGGGTCAGTGCCCTGCTGGGCATCCTTGCAAGTCAGGGCC | + |
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Preference number: 2 (lower is better) Translates to: DCRGNTLLGVAACVP*TGSVPCWASLQVRA Trigger: GGCCCTGACTTGCAAGGATGCCCAGCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| 3UTR-3UTR CCA 90 bp | AAGATCGTAAAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGGGTCAGTGCCCTGCTaGGCATCCTTGCAAGTCAGG | + |
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Preference number: 2 (lower is better) Translates to: KIVKYRCFQAGLLSTLGSGSVPC*ASLQVR Trigger: CCTGACTTGCAAGGATGCCCAGCAGGGCACTGACCC...AGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTTTACGATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| 3UTR TCA 72 bp | GGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTaGCTGGGTCAGTGCCCTGCTGGGCATCCTTGCAAG | + |
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Preference number: 3 (lower is better) Translates to: GTHSWVSLLVCL*LGQCPAGHPCK Trigger: CTTGCAAGGATGCCCAGCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| 3UTR CCA 72 bp | AGTACTCTTGGTTCTGAGTTACATGCTAGACTGTCGTaGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: STLGSELHARLS*EHTPGCRCLCA Trigger: GGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAGCATGTAACTCAGAACCAAGAGTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR TCA 90 bp | CTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCGGATGGCGTAGCGGATaGGCGTGCGCCGCAGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LSWEHTPGCRCLCAFDWVGWRSG*ACAAAN Trigger: GTTTGCTGCGGCGCACGCTCATCCGCTACGCCATCC...GACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR TCA 90 bp | CGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGGCTAGCACCAGGTGGTaGAGAGTGGGAAAGCGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RGNTLLGVAACVPLTGSVASTRW*RVGKRL Trigger: CAAGCGCTTTCCCACTCTTCACCACCTGGTGCTAGC...CACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | GCTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACGCAGCTTGTAGATGCTaGCTCGCCAGCACAGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: ARLSWEHTPGCRCLCAFDAACRC*LASTGG Trigger: TCCTCCTGTGCTGGCGAGGCAGCATCTACAAGCTGC...GTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | GCTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACACGAAGCTAGACACCTaGATCATGAGGCGGTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: ARLSWEHTPGCRCLCAFDTKLDT*IMRRSG Trigger: GCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGT...GTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGAATGCCGGCGAGACCTaGCAGAAGCAGCTGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWNAGET*QKQLCR Trigger: CCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATT...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | CGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCACCTGTGTCTGAACTaGAGGGTGCTGACTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: RGNTLLGVAACVPLTGSVHLCLN*RVLTAQ Trigger: CTGAGCAGTCAGCACCCTCCAGTTCAGACACAGGTG...CACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | ACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCCCTGCTGGGGTAGGCCCAACTTCTaGAACTGCTTATGTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: TLLGVAACVPLTGSVPCWGRPNF*NCLCSP Trigger: TGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACC...CCAGCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGGAGGCAAGTTCTGGTaGATCCCATCCACGGACAAC | + |
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Preference number: 4 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWGGKFW*IPSTDN Trigger: GTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCC...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGTTGGCATCCTTACACTaGCCTTCGAGGAGGGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWLASLH*PSRRGF Trigger: GAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAA...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR TCA 90 bp | AACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCCCTGCAGCCTGTATATTGGTTaGCATCTGGTCCAAACGGCG | + |
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Preference number: 4 (lower is better) Translates to: NTLLGVAACVPLTGSVPCSLYIG*HLVQTA Trigger: CGCCGTTTGGACCAGATGTCAACCAATATACAGGCT...GCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | GCTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACGTTGATGAGCTGTTCTaGCACCTTCAGCCAGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: ARLSWEHTPGCRCLCAFDVDELF*HLQPAH Trigger: ATGGGCTGGCTGAAGGTGGCAGAACAGCTCATCAAC...GTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | CGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGAGAGAACAGGTTTGGTaGCAGCTTCATCCCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: RGNTLLGVAACVPLTGSVREQVW*QLHPCR Trigger: CCTACAGGGATGAAGCTGGCACCAAACCTGTTCTCT...CACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | CTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAACCGAGGCGGGCATTaGCTACTTTGTTTGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: LSWEHTPGCRCLCAFDWVNRGGH*LLCLCR Trigger: CCTACACAAACAAAGTAGCCAATGCCCGCCTCGGTT...GACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | CTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCCCTTCATTGACAAGTTaGCAAACCACACCCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LSWEHTPGCRCLCAFDWVPSLTS*QTTPRA Trigger: TGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGG...GACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGTGGGTAGTCCTTGTTTaGGTTCAGAAACTGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWWVVLV*VQKLPP Trigger: GGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCA...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | AACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCCCTGCGAAAAAGCTGTATACTaGCACTGTCACCACCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: NTLLGVAACVPLTGSVPCEKAVY*HCHHLC Trigger: ACACAGGTGGTGACAGTGGCAGTATACAGCTTTTTC...GCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | AACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCCCTGCCCTCCCGATCAAGCATaGAAGGAAAAAGCTGTATAC | + |
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Preference number: 4 (lower is better) Translates to: NTLLGVAACVPLTGSVPCPPDQA*KEKAVY Trigger: GTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGG...GCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | CGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGTCTGGTTTTTCTGGTTaGCATCCTTACACTGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: RGNTLLGVAACVPLTGSVSGFSG*HPYTGL Trigger: AAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGA...CACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGTGCTTATGTTCCCCATaGGTCATAAAACCTGCTAGC | + |
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Preference number: 4 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWCLCSP*VIKPAS Trigger: GCTAGCAGGTTTTATGACCCATGGGGAACATAAGCA...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | GCTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTTTCTTGGTAATCTGTaGAAGGCCCATCACCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: ARLSWEHTPGCRCLCAFDFLGNL*KAHHLC Trigger: ACACAGGTGATGGGCCTTCCACAGATTACCAAGAAA...GTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | CTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTCATAGAGAACAGGTTTaGTGCCAGCTTCATCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LDCRGNTLLGVAACVPLTHREQV*CQLHPC Trigger: ACAGGGATGAAGCTGGCACCAAACCTGTTCTCTATG...AGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCCCTGCTCTCCTCTTAAACCTTaGAACACATTTCAAGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: NTLLGVAACVPLTGSVPCSPLKP*NTFQEV Trigger: GACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGA...GCAGGGCACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | GTAAAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGAGTTAAGGGTGGCTGCTGGGTaGCTGTGGGCCACAATGGGA | + |
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Preference number: 4 (lower is better) Translates to: VKYRCFQAGLLSTLGSELRVAAG*LWATMG Trigger: TCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCT...TAACTCAGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | AAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGAGTTACATACAGCAGCTTGTAGATaGTGCCTCGCCAGCACAGGA | + |
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Preference number: 4 (lower is better) Translates to: KYRCFQAGLLSTLGSELHTAACR*CLASTG Trigger: TCCTGTGCTGGCGAGGCAGCATCTACAAGCTGCTGT...ATGTAACTCAGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AAGATCGTAAAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTATGGGAGGCAAGTTCTaGTGCATCCCATCCACGGAC | + |
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Preference number: 4 (lower is better) Translates to: KIVKYRCFQAGLLSTLGSMGGKF*CIPSTD Trigger: GTCCGTGGATGGGATGCACCAGAACTTGCCTCCCAT...AGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTTTACGATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGAGTTACATGCCTGTGGGCCACAATaGGAGCCTCTCCTCTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: KYRCFQAGLLSTLGSELHACGPQ*EPLLLN Trigger: GTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGC...ATGTAACTCAGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR GCA 90 bp | GTAAAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGAGTTAGACAACAGGGACACCTaGAGGTTTCTGTCAATGATC | + |
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Preference number: 4 (lower is better) Translates to: VKYRCFQAGLLSTLGSELDNRDT*RFLSMI Trigger: GATCATTGACAGAAACCTGCAGGTGTCCCTGTTGTC...TAACTCAGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CCA 90 bp | AAGATCGTAAAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTATCCATCTCATGGCCTaGGTAGTCCTTGTTTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: KIVKYRCFQAGLLSTLGSIHLMA*VVLVWV Trigger: AACCCAAACAAGGACTACCCAGGCCATGAGATGGAT...AGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTTTACGATCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR TCA 90 bp | AAGATCGTAAAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTAAGATAGGCCTTCATTaGCAAGTTGGCAAACCACAC | + |
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Preference number: 4 (lower is better) Translates to: KIVKYRCFQAGLLSTLGSKIGLH*QVGKPH Trigger: GTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTT...AGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTTTACGATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR TCA 90 bp | AAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGAGTTACATAGAATTGCAGGATTGTaGAGACAGGCACAACCAGAT | + |
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Preference number: 4 (lower is better) Translates to: KYRCFQAGLLSTLGSELHRIAGL*RQAQPD Trigger: ATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCT...ATGTAACTCAGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS GCA 90 bp | TCTGTGGAAGGCCCATCACCTGTGTCTGAACTGGAGGGTGCTGACTaGTCAGTAGGGTGGCTGCTGGGTGCCTGTGGGCCACAATGGGAG | + |
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Preference number: 5 (lower is better) Translates to: SVEGPSPVSELEGAD*SVGWLLGACGPQWE Trigger: CTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAGGTGATGGGCCTTCCACAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS CCA 90 bp | AGCAAACGGCCTTCCTCATCCTTGCCCTCCACGAAGCTAGACACCTaGATCATGAGGCGGTCGGGCCACGGCAAGTTCTCGTACTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: SKRPSSSLPSTKLDT*IMRRSGHGKFSYWL Trigger: GAGCCAGTACGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGGCCGTTTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CCA 90 bp | AGGGCGGCTGAGGCGCTGCCTCGTTCCAGTACATGTCACGTTCCATaGGAGGCAAGTTCTGGTGCATCCCATCCACGGACAACAGGGACA | + |
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Preference number: 5 (lower is better) Translates to: RAAEALPRSSTCHVP*EASSGASHPRTTGT Trigger: TGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS-3UTR CAA 90 bp | CTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGCGCAGGATGAGCACTaGGCCCAGGATGGCGTAGCG | + |
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Preference number: 5 (lower is better) Translates to: LDCRGNTLLGVAACVPLTAQDEH*AQDGVA Trigger: CGCTACGCCATCCTGGGCCAAGTGCTCATCCTGCGC...AGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CAA 90 bp | CTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCGGCACCCAGAATGTGTaGTGTGGTAGGCCCAACTTC | + |
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Preference number: 5 (lower is better) Translates to: LSWEHTPGCRCLCAFDWVGTQNV*CGRPNF Trigger: GAAGTTGGGCCTACCACACAACACATTCTGGGTGCC...GACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CAA 90 bp | CGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGGCCTTCATTGACAAGTaGGCAAACCACACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: RGNTLLGVAACVPLTGSVAFIDK*ANHTQG Trigger: GCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGC...CACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CAA 90 bp | CGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTCAGTGCTGGGTAGTCCTTGTTaGGGTTCAGAAACTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RGNTLLGVAACVPLTGSVLGSPC*GSETAS Trigger: GGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAG...CACTGACCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS CCA 90 bp | CGGTGTCCCGGATTCGACCTCCAAGATAGGCCTTCATTGACAAGTTaGCAAACCACACCCAGGGCACCCAGAATGTGTTGTGTGGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: RCPGFDLQDRPSLTS*QTTPRAPRMCCVVG Trigger: GCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS-3UTR CAA 90 bp | GACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGGTGTCAGCCTCCTCTTTaGACCAAAGCTCTAAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: DCRGNTLLGVAACVPLTGCQPPL*TKALSL Trigger: AAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACA...CCCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CAA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGTTCTGGTTTTTCTGGTaGGCATCCTTACACTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWFWFFW*ASLHWP Trigger: AGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAA...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CAA 90 bp | AGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTGGCAAGATAGGCCTTCATaGACAAGTTGGCAAACCACA | + |
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Preference number: 5 (lower is better) Translates to: RLSWEHTPGCRCLCAFDWQDRPS*TSWQTT Trigger: TGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTG...CCAGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS-3UTR CAA 90 bp | CTAGACTGTCGTGGGAACACACTCCTGGGTGTCGCTGCTTGTGTGCCTTTGACTCATGTGACAGATTTCTaGGTAATCTGTGGAAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: LDCRGNTLLGVAACVPLTHVTDF*VICGRP Trigger: GGGCCTTCCACAGATTACCAAGAAATCTGTCACATG...AGTCAAAGGCACACAAGCAGCGACACCCAGGAGTGTGTTCCCACGACAGTCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS TCA 90 bp | CTGCCACCTTCAGCCAGCCCATGTAGAATAAGAATTGCAGGATTGTaGAGACAGGCACAACCAGATCCATCTCATGGCCTGGGTAGTCCT | + |
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Preference number: 5 (lower is better) Translates to: LPPSASPCRIRIAGL*RQAQPDPSHGLGSP Trigger: AGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGAAGGTGGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS GCA 90 bp | CAGAAACTGCCTCCCGATCAAGCATGCAAGGAAAAAGCTGTATACTaGCACTGTCACCACCTGTGTGTACACCAATGGGATACTTATCCA | + |
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Preference number: 5 (lower is better) Translates to: QKLPPDQACKEKAVY*HCHHLCVHQWDTYP Trigger: TGGATAAGTATCCCATTGGTGTACACACAGGTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS GCA 90 bp | GATGGTAGTTTTTGGGTTGCAGTCCTAAGAAGCAGCCTATGGTGCTaGTATAGCCACTCTCTTTCTTATCCGTGTCAGCCTCCTCTTTTG | + |
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Preference number: 5 (lower is better) Translates to: DGSFWVAVLRSSLWC*YSHSLSYPCQPPLL Trigger: CAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CCA 90 bp | TGTAGGGATAGGACTCTGCATGCTCCTTCATTAGAGCCTGTATATTaGTTGACATCTGGTCCAAACGGCGCTGTTGAAGATGTTCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: CRDRTLHAPSLEPVY*LTSGPNGAVEDVLW Trigger: CCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS CCA 90 bp | AAGAAGTCCAGACCCTTAAATTTCCAGACATCTTTCTGGTTTTTCTaGTTGGCATCCTTACACTGGCCTTCGAGGAGGGGGTTCTTAGAA | + |
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Preference number: 5 (lower is better) Translates to: KKSRPLNFQTSFWFF*LASLHWPSRRGFLE Trigger: TTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS CCA 90 bp | ACAATAGTTTGGTCTTTAAGTCTTTCAAGGGAAGATGGTAGTTTTTaGGTTGCAGTCCTAAGAAGCAGCCTATGGTGCTGCTATAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: TIVWSLSLSREDGSF*VAVLRSSLWCCYSH Trigger: GTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS-3UTR CAA 90 bp | AAATACAGGTGTTTTCAGGCAGGACTATTAAGTACTCTTGGTTCTGAGTTACATATTAGAGCCTGTATATaGGTTGACATCTGGTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: KYRCFQAGLLSTLGSELHIRACI*VDIWSK Trigger: TTTGGACCAGATGTCAACCAATATACAGGCTCTAAT...ATGTAACTCAGAACCAAGAGTACTTAATAGTCCTGCCTGAAAACACCTGTATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS GCA 72 bp | GGCCCATCACCTGTGTCTGAACTGGAGGGTGCTGACTaGTCAGTAGGGTGGCTGCTGGGTGCCTGTGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: GPSPVSELEGAD*SVGWLLGACGP Trigger: TGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAGGTGATGGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS GCA 72 bp | CCTGGCAGAAGCAGCTGTGTAGGGCGGCTGAGGCGCTaGCTCGTTCCAGTACATGTCACGTTCCATGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: PGRSSCVGRLRR*LVPVHVTFHGR Trigger: CCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CCA 72 bp | CCTTCCTCATCCTTGCCCTCCACGAAGCTAGACACCTaGATCATGAGGCGGTCGGGCCACGGCAAGTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: PSSSLPSTKLDT*IMRRSGHGKFS Trigger: CGAGAACTTGCCGTGGCCCGACCGCCTCATGATCCAGGTGTCTAGCTTCGTGGAGGGCAAGGATGAGGAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CCA 72 bp | GAGGCGCTGCCTCGTTCCAGTACATGTCACGTTCCATaGGAGGCAAGTTCTGGTGCATCCCATCCACGGACA | + |
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Preference number: 6 (lower is better) Translates to: EALPRSSTCHVP*EASSGASHPRT Trigger: TGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CAA 72 bp | CGGTGTCCCGGATTCGACCTCCAAGATAGGCCTTCATaGACAAGTTGGCAAACCACACCCAGGGCACCCAGA | + |
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Preference number: 6 (lower is better) Translates to: RCPGFDLQDRPS*TSWQTTPRAPR Trigger: TCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS TCA 72 bp | GGTGTCCCGGATTCGACCTCCAAGATAGGCCTTCATTaGCAAGTTGGCAAACCACACCCAGGGCACCCAGAA | + |
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Preference number: 6 (lower is better) Translates to: GVPDSTSKIGLH*QVGKPHPGHPE Trigger: TTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAAGGCCTATCTTGGAGGTCGAATCCGGGACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS GCA 72 bp | AGACAAGGAATTCTCCATACAGCAGCTTGTAGATGCTaGCTCGCCAGCACAGGAGGAGGGACGAGAACGAAC | + |
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Preference number: 6 (lower is better) Translates to: RQGILHTAACRC*LASTGGGTRTN Trigger: GTTCGTTCTCGTCCCTCCTCCTGTGCTGGCGAGGCAGCATCTACAAGCTGCTGTATGGAGAATTCCTTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CAA 90 bp | TTCATTGACAAGTTGGCAAACCACACCCAGGGCACCCAGAATGTGTaGTGTGGTAGGCCCAACTTCTGCAACTGCTTATGTTCCCCATGG | + |
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Preference number: 6 (lower is better) Translates to: FIDKLANHTQGTQNV*CGRPNFCNCLCSPW Trigger: CCATGGGGAACATAAGCAGTTGCAGAAGTTGGGCCTACCACACAACACATTCTGGGTGCCCTGGGTGTGGTTTGCCAACTTGTCAATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CAA 90 bp | AGACAGGCACAACCAGATCCATCTCATGGCCTGGGTAGTCCTTGTTaGGGTTCAGAAACTGCCTCCCGATCAAGCATGCAAGGAAAAAGC | + |
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Preference number: 6 (lower is better) Translates to: RQAQPDPSHGLGSPC*GSETASRSSMQGKS Trigger: GCTTTTTCCTTGCATGCTTGATCGGGAGGCAGTTTCTGAACCCAAACAAGGACTACCCAGGCCATGAGATGGATCTGGTTGTGCCTGTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CAA 90 bp | AGGGATAGGACTCTGCATGCTCCTTCATTAGAGCCTGTATATTGGTaGACATCTGGTCCAAACGGCGCTGTTGAAGATGTTCTGTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: RDRTLHAPSLEPVYW*TSGPNGAVEDVLWG Trigger: GCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACAGGCTCTAATGAAGGAGCATGCAGAGTCCTATCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS GCA 72 bp | CCTCCCGATCAAGCATGCAAGGAAAAAGCTGTATACTaGCACTGTCACCACCTGTGTGTACACCAATGGGAT | + |
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Preference number: 6 (lower is better) Translates to: PPDQACKEKAVY*HCHHLCVHQWD Trigger: ATCCCATTGGTGTACACACAGGTGGTGACAGTGGCAGTATACAGCTTTTTCCTTGCATGCTTGATCGGGAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS TCA 72 bp | TCAGCCAGCCCATGTAGAATAAGAATTGCAGGATTGTaGAGACAGGCACAACCAGATCCATCTCATGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: SASPCRIRIAGL*RQAQPDPSHGL Trigger: CAGGCCATGAGATGGATCTGGTTGTGCCTGTCTTCACAATCCTGCAATTCTTATTCTACATGGGCTGGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CCA 72 bp | AGACCCTTAAATTTCCAGACATCTTTCTGGTTTTTCTaGTTGGCATCCTTACACTGGCCTTCGAGGAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: RPLNFQTSFWFF*LASLHWPSRRG Trigger: CCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS TCA 72 bp | TGTATATTGGTTGACATCTGGTCCAAACGGCGCTGTTaGAGATGTTCTGTGGGGCTCTCTGGAATGTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: CILVDIWSKRRC*RCSVGLSGMFK Trigger: CTTGAACATTCCAGAGAGCCCCACAGAACATCTTCAACAGCGCCGTTTGGACCAGATGTCAACCAATATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS CCA 72 bp | TGGTCTTTAAGTCTTTCAAGGGAAGATGGTAGTTTTTaGGTTGCAGTCCTAAGAAGCAGCCTATGGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: WSLSLSREDGSF*VAVLRSSLWCC Trigger: GCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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| CDS CCA 72 bp | ACATCTTTCTGGTTTTTCTGGTTGGCATCCTTACACTaGCCTTCGAGGAGGGGGTTCTTAGAACACAATAGT | + |
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Preference number: 6 (lower is better) Translates to: TSFWFFWLASLH*PSRRGFLEHNS Trigger: ACTATTGTGTTCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS CCA 72 bp | CTGTGGGCCACAATGGGAGCCTCTCCTCTTAAACCTTaGAACACATTTCAAGAAGTCCAGACCCTTAAATTT | + |
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Preference number: 6 (lower is better) Translates to: LWATMGASPLKP*NTFQEVQTLKF Trigger: AAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117346.2 |
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| CDS TCA 72 bp | TTCTGTAGAGTCCACGGATGGAATAGTAGAGGAATATaGAGACAAGGAATTCTCCATACAGCAGCTTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: FCRVHGWNSRGI*RQGILHTAACR Trigger: TCTACAAGCTGCTGTATGGAGAATTCCTTGTCTTCATATTCCTCTACTATTCCATCCGTGGACTCTACAGAA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000117346.2 ENSMUST00000235983.2 |
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