RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BDP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049658

Ensembl transcript IDs: ENSMUST00000038104.12, ENSMUST00000099262.10, ENSMUST00000109379.9, ENSMUST00000163097.2

Found 645 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCTTGAGGACCGGTGTTTTCTTGTTGGGCTTCTGGAATATGAGATaGTACACTCTCTGGCCCATGAAGCACGGGCACGTCGCTGCCTTT +
Preference number: 1 (lower is better)
Translates to: SLRTGVFLLGFWNMR*YTLWPMKHGHVAAF
Trigger: AAAGGCAGCGACGTGCCCGTGCTTCATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR GCA 90 bp ATCAAGCTCCCAGTGTGCCAGCACTACGATTTATACAGATGTGCGTaGACACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATC +
Preference number: 1 (lower is better)
Translates to: IKLPVCQHYDLYRCA*TQFSSPGALSTEDI
Trigger: GATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTGTGCACGCACATCTGTATAAATCGTAGTGCTGGCACACTGGGAGCTTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR GCA 90 bp CACAATCAAGCTCCCAGTGTGCCAGCACTACGATTTATACAGATGTaGGTGCACACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGA +
Preference number: 1 (lower is better)
Translates to: HNQAPSVPALRFIQM*VHTVLKSRCAQHRG
Trigger: TCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTGTGCACGCACATCTGTATAAATCGTAGTGCTGGCACACTGGGAGCTTGATTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR CCA 90 bp GGTGTTTTCTTGTTGGGCTTCTGGAATATGAGATGGTACACTCTCTaGCCCATGAAGCACGGGCACGTCGCTGCCTTTAGGGGTTTCTTT +
Preference number: 1 (lower is better)
Translates to: GVFLLGFWNMRWYTL*PMKHGHVAAFRGFF
Trigger: AAAGAAACCCCTAAAGGCAGCGACGTGCCCGTGCTTCATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 90 bp GGGGTTTCTTTGAGGGCTTCTTTAGCAGCACTCTCACCAAAACTCTaGCCCGAATCGAGTGTCTGCTGCCCTATCTCAGAAGAAGCAACT +
Preference number: 1 (lower is better)
Translates to: GVSLRASLAALSPKL*PESSVCCPISEEAT
Trigger: AGTTGCTTCTTCTGAGATAGGGCAGCAGACACTCGATTCGGGTCAGAGTTTTGGTGAGAGTGCTGCTAAAGAAGCCCTCAAAGAAACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CCA 90 bp ATTCACTGTAACAGCTTGAGGACCGGTGTTTTCTTGTTGGGCTTCTaGAATATGAGATGGTACACTCTCTGGCCCATGAAGCACGGGCAC +
Preference number: 1 (lower is better)
Translates to: IHCNSLRTGVFLLGF*NMRWYTLWPMKHGH
Trigger: GTGCCCGTGCTTCATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCTGTTACAGTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR GCA 90 bp AGAAAAGAAGGGCAGCAAATGTTAAGCACAATCAAGCTCCCAGTGTaGCAGCACTACGATTTATACAGATGTGCGTGCACACAGTTCTCA +
Preference number: 1 (lower is better)
Translates to: RKEGQQMLSTIKLPV*QHYDLYRCACTQFS
Trigger: TGAGAACTGTGTGCACGCACATCTGTATAAATCGTAGTGCTGGCACACTGGGAGCTTGATTGTGCTTAACATTTGCTGCCCTTCTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR TCA 90 bp TTTTCAGAACTGCCACTTCTAGAAGGAGATAAGGATGGAGCATCTTaGACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGT +
Preference number: 1 (lower is better)
Translates to: FSELPLLEGDKDGAS*TTKEVCKLPLRSPR
Trigger: ACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATGCTCCATCCTTATCTCCTTCTAGAAGTGGCAGTTCTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CCA 90 bp TGCGACTGCTCCTCTTCCTTAGTTTCTGCTGCTGTGACTGGTGCATaGCTTTTATCTTCTAATTCTACTGCTTTGGAATCATCTCCTTCA +
Preference number: 1 (lower is better)
Translates to: CDCSSSLVSAAVTGA*LLSSNSTALESSPS
Trigger: TGAAGGAGATGATTCCAAAGCAGTAGAATTAGAAGATAAAAGCCATGCACCAGTCACAGCAGCAGAAACTAAGGAAGAGGAGCAGTCGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 90 bp TTCCAACTGAAGTATTGCTCATTTCCTAATACACTGAACAGTTTTTaGATCTTAGGCACATCCTGCCTAAGCAGCTGCTACCAGGACCAC +
Preference number: 1 (lower is better)
Translates to: FQLKYCSFPNTLNSF*ILGTSCLSSCYQDH
Trigger: GTGGTCCTGGTAGCAGCTGCTTAGGCAGGATGTGCCTAAGATTCAAAAACTGTTCAGTGTATTAGGAAATGAGCAATACTTCAGTTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR TCA 90 bp TCTCACTCTGAGGCAATTGAGCCATGTTTTCTACACACGCATCTTTaGTTTCATCAAGAGATCCAGATGATCCTGTATCAGTTGGCTCAC +
Preference number: 1 (lower is better)
Translates to: SHSEAIEPCFLHTHL*FHQEIQMILYQLAH
Trigger: GTGAGCCAACTGATACAGGATCATCTGGATCTCTTGATGAAATCAAAGATGCGTGTGTAGAAAACATGGCTCAATTGCCTCAGAGTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 90 bp ATATTTGCATCTATGTCTTGCCTGGGCCACCTGCTAAGATGTAATTaGTCAGAGGAAAACAGTCAAGAGAAGGTAAAGCCCTTTCATACA +
Preference number: 1 (lower is better)
Translates to: IFASMSCLGHLLRCN*SEENSQEKVKPFHT
Trigger: TGTATGAAAGGGCTTTACCTTCTCTTGACTGTTTTCCTCTGATCAATTACATCTTAGCAGGTGGCCCAGGCAAGACATAGATGCAAATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR GCA 90 bp GCAGCAGGACAATTTGTTGACCGACATGATTCTCTATACAACAAATaGCCCTGTAGTCTTTATACAATAAATTACATCTTCCATAAAATC +
Preference number: 1 (lower is better)
Translates to: AAGQFVDRHDSLYNK*PCSLYTINYIFHKI
Trigger: GATTTTATGGAAGATGTAATTTATTGTATAAAGACTACAGGGGCATTTGTTGTATAGAGAATCATGTCGGTCAACAAATTGTCCTGCTGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp AGAAGGGGCCCCAGGAGAGAGCTTTATAGTGTCTCATCCACTTCAATGAAGATGCCTGACCAATATAGGTaGTGGCAGCAGAGAGCTCGG +
Preference number: 2 (lower is better)
Translates to: RRGPRRELYSVSSTSMKMPDQYR*WQQRAR
Trigger: CCGAGCTCTCTGCTGCCAGCACCTATATTGGTCAGG...CATCTTCATTGAAGTGGATGAGACACTATAAAGCTCTCTCCTGGGGCCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGCCGTGCTTCCATCACTaGGACCTGGCTCTTCTTGGG +
Preference number: 2 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLPCFHH*DLALLG
Trigger: CCCAAGAAGAGCCAGGTCCCAGTGATGGAAGCACGG...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CAA 90 bp CCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTCGCAGGTAGGATaGCTTCTTGAGAAACACTGGCCCCTTCAACATCACCCACACACT +
Preference number: 2 (lower is better)
Translates to: PLARSPHDLQFSQVG*LLEKHWPLQHHPHT
Trigger: AGTGTGTGGGTGATGTTGAAGGGGCCAGTGTTTCTCAAGAAGCAATCCTACCTGCGAGAATTGAAGATCATGAGGAGACCTTGCAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCCTGCCTAAGCAGCTaGTACCAGGACCACTTGGGC +
Preference number: 2 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSCLSS*YQDHLG
Trigger: GCCCAAGTGGTCCTGGTAGCAGCTGCTTAGGCAGGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGTGCTTTTCTGCTTGGTaGAAGTCAGGGTCGCTGGAA +
Preference number: 2 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLCFSAW*KSGSLE
Trigger: TTCCAGCGACCCTGACTTTCACCAAGCAGAAAAGCA...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp TATCAGTTGGCTCACTGTGTTCCTTCTGAGGTTTTGAGGTTGCATGTGTGCTCTTCTGCTTGCACAGCCTaGGCTGTTGTGTCCATATGT +
Preference number: 2 (lower is better)
Translates to: YQLAHCVPSEVLRLHVCSSACTA*AVVSIC
Trigger: ACATATGGACACAACAGCTCAGGCTGTGCAAGCAGA...AGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TGCAGTACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTACATCACCCACACACTaGGACTGCTCCTCTTCCTTA +
Preference number: 2 (lower is better)
Translates to: CSTRLLNLLQGLLMIFNSTSPTH*DCSSSL
Trigger: TAAGGAAGAGGAGCAGTCGCAGTGTGTGGGTGATGT...AGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGAGTTGTATTCCTGGTTaGCAAGGTCTCCTCCACTGC +
Preference number: 2 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLSCIPG*QGLLHC
Trigger: GCAGTGGAGGAGACCTTGCCAACCAGGAATACAACT...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp AGAAGGGGCCCCAGGAGAGAGCTTTATAGTGTCTCATCCACTTCAATGAAGATGCCTCAGGTGCTCCTTTaGGCCCATTTTTACACTCTT +
Preference number: 2 (lower is better)
Translates to: RRGPRRELYSVSSTSMKMPQVLL*AHFYTL
Trigger: AAGAGTGTAAAAATGGGCCCAAAGGAGCACCTGAGG...CATCTTCATTGAAGTGGATGAGACACTATAAAGCTCTCTCCTGGGGCCCCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CAA 90 bp AGCAAATGGATTCACTGTAACAGCTTGAGGACCGGTGTTTTCTTGTaGGGCTTCTGGAATATGAGATGGTACACTCTCTGGCCCATGAAG +
Preference number: 2 (lower is better)
Translates to: SKWIHCNSLRTGVFL*GFWNMRWYTLWPMK
Trigger: CTTCATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCTGTTACAGTGAATCCATTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CAA 90 bp ATCAGCAAATGGATTCACTGTAACAGCTTGAGGACCGGTGTTTTCTaGTTGGGCTTCTGGAATATGAGATGGTACACTCTCTGGCCCATG +
Preference number: 2 (lower is better)
Translates to: ISKWIHCNSLRTGVF*LGFWNMRWYTLWPM
Trigger: CATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCTGTTACAGTGAATCCATTTGCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGCAGTACCCGACTCTTaGACCTCTTGCAAGGTCTCC +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEAVPDS*TSCKVS
Trigger: GGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGACAGTGGTGCTTTTCTaGTTGGTGAAAGTCAGGGTC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWTVVLF*LVKVRV
Trigger: GACCCTGACTTTCACCAAGCAGAAAAGCACCACTGT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TATCAGTTGGCTCACTGTGTTCCTTCTGAGGTTTTGAGGTTGCATGTGTGCTCTCTCTTCCTTAGTTTCTaGTGCTGTGACTGGTGCATG +
Preference number: 2 (lower is better)
Translates to: YQLAHCVPSEVLRLHVCSLFLSF*CCDWCM
Trigger: CATGCACCAGTCACAGCAGCAGAAACTAAGGAAGAG...AGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTCCAGGAATGATCTCTaGCTGCAATACTATATCTCC +
Preference number: 2 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSRNDL*LQYYIS
Trigger: GGAGATATAGTATTGCAGTCAGAGATCATTCCTGGA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGGACCATGAGACTCACTaGTCTCTAAAGTCTTCTCAG +
Preference number: 2 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLDHETH*SLKSSQ
Trigger: CTGAGAAGACTTTAGAGATCAGTGAGTCTCATGGTC...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGGTAAACAAGCTACAATaGCTGTCAGTGAGACCAGTC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWVNKLQ*LSVRPV
Trigger: GACTGGTCTCACTGACAGGCATTGTAGCTTGTTTAC...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TGCAGTACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTGTAAACAAGCTACAATaGCTGTCAGTGAGACCAGTC +
Preference number: 2 (lower is better)
Translates to: CSTRLLNLLQGLLMIFNSVNKLQ*LSVRPV
Trigger: GACTGGTCTCACTGACAGGCATTGTAGCTTGTTTAC...AGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGGAGGACCTCACTGGCTaGCTTATTTTCTGCTTTAAC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWEDLTG*LIFCFN
Trigger: GTTAAAGCAGAAAATAAGGCAGCCAGTGAGGTCCTC...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGTTCCTTAGTTTCTGCTaGTGTGACTGGTGCATGGCT +
Preference number: 2 (lower is better)
Translates to: WAHFYTLLLARADQKKPEFLSFC*CDWCMA
Trigger: AGCCATGCACCAGTCACAGCAGCAGAAACTAAGGAA...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCAGGTCACCTCGTTCTaGTGCATTCCCAGACCTGAC +
Preference number: 2 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNQVTSF*CIPRPD
Trigger: GTCAGGTCTGGGAATGCAGCAGAACGAGGTGACCTG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGACACTGAACAGTTTTTaGATCTTAGGCACATCCTGC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWTLNSF*ILGTSC
Trigger: GCAGGATGTGCCTAAGATTCAAAAACTGTTCAGTGT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACCCCCTGTCCAGGAATaGTCTCTGACTGCAATACTA +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEPPVQE*SLTAIL
Trigger: TAGTATTGCAGTCAGAGATCATTCCTGGACAGGGGG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGTCACTGTGTTCCTTCTaGGGTTTTGAGGTTGCATGT +
Preference number: 2 (lower is better)
Translates to: WAHFYTLLLARADQKKPESLCSF*GFEVAC
Trigger: ACATGCAACCTCAAAACCTCAGAAGGAACACAGTGA...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGATCAAGAGATCCAGATaGTCCTGTATCAGTTGGCTC +
Preference number: 2 (lower is better)
Translates to: WAHFYTLLLARADQKKPEIKRSR*SCISWL
Trigger: GAGCCAACTGATACAGGATCATCTGGATCTCTTGAT...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGTTCTGGAATATGAGATaGTACACTCTCTGGCCCATG +
Preference number: 2 (lower is better)
Translates to: WAHFYTLLLARADQKKPEFWNMR*YTLWPM
Trigger: CATGGGCCAGAGAGTGTACCATCTCATATTCCAGAA...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCAAGTGAGGACTTTTTaGCAGGAGGAACATGAATAC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWQVRTF*QEEHEY
Trigger: GTATTCATGTTCCTCCTGCCAAAAAGTCCTCACTTG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTGCTTTTCTGCTTGGTaGAAGTCAGGGTCGCTGGAA +
Preference number: 2 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNCFSAW*KSGSLE
Trigger: TTCCAGCGACCCTGACTTTCACCAAGCAGAAAAGCA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGACACTGAACAGTTTTTaGATCTTAGGCACATCCTGC +
Preference number: 2 (lower is better)
Translates to: WAHFYTLLLARADQKKPETLNSF*ILGTSC
Trigger: GCAGGATGTGCCTAAGATTCAAAAACTGTTCAGTGT...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTGTTGTGTCCATATGTaGAAGCTGATGTTCAACAAC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWCCVHM*KLMFNN
Trigger: GTTGTTGAACATCAGCTTTCACATATGGACACAACA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp AGTTTTCTCTTCTTTATCAGATACTATCTCACTCTGAGGCAATTGAGCCATGTTGTTCTCAAGTCCAGGTaGGCTCAGCACAGAGGACAT +
Preference number: 2 (lower is better)
Translates to: SFLFFIRYYLTLRQLSHVVLKSR*AQHRGH
Trigger: ATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAAC...AACATGGCTCAATTGCCTCAGAGTGAGATAGTATCTGATAAAGAAGAGAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGATCAAGCTCCCAGTGTaGCAGCACTACGATTTATAC +
Preference number: 2 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQIKLPV*QHYDLY
Trigger: GTATAAATCGTAGTGCTGGCACACTGGGAGCTTGAT...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCTGGGTATTAATATTTaGATCTATGTCTTGCCTGGG +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWLGINI*IYVLPG
Trigger: CCCAGGCAAGACATAGATGCAAATATTAATACCCAG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAATACACAGCTTTCTCTaGTTGCACAGCCTGAGCTGT +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEIHSFL*LHSLSC
Trigger: ACAGCTCAGGCTGTGCAAGCAGAGAAAGCTGTGTAT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCTCTCTGTTCAGAATTaGAAGCAGGTTCAGTTTTCT +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWLSVQN*KQVQFS
Trigger: AGAAAACTGAACCTGCTTCCAATTCTGAACAGAGAG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTGGAGTTTCACACTTTaGTTTCATATTGTTACAGGC +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWWSFTL*FHIVTG
Trigger: GCCTGTAACAATATGAAAGCAAAGTGTGAAACTCCA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGGGAATGATCTCTGACTaGAATACTATATCTCCCATT +
Preference number: 2 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLGMISD*NTISPI
Trigger: AATGGGAGATATAGTATTGCAGTCAGAGATCATTCC...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTCTTCAAATGATGCATaGGATGTACTAATGACAGGT +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWSSNDA*DVLMTG
Trigger: ACCTGTCATTAGTACATCGCATGCATCATTTGAAGA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCAGATTCATGTTCTGTaGCTGAAAGCCCACATGTCC +
Preference number: 2 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNQIHVL*LKAHMS
Trigger: GGACATGTGGGCTTTCAGCCACAGAACATGAATCTG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGATGTGAATTACCTCCATaGTTTTGTGACATTAGTCAC +
Preference number: 2 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRCELPP*FCDISH
Trigger: GTGACTAATGTCACAAAATCATGGAGGTAATTCACA...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAATGGTCACTTGCATTTaGATAATGGTGGTAAACACT +
Preference number: 2 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRMVTCI*IMVVNT
Trigger: AGTGTTTACCACCATTATTCAAATGCAAGTGACCAT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGGCTGCCTTATTTTCTaGTTTAACATCAGATTCATG +
Preference number: 2 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRGCLIF*FNIRFM
Trigger: CATGAATCTGATGTTAAAGCAGAAAATAAGGCAGCC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTTCCAACTGAAGTATTaGTCATTTCCTAATACACTG +
Preference number: 2 (lower is better)
Translates to: AAATRTTWATQFKKNLLWFQLKY*SFPNTL
Trigger: CAGTGTATTAGGAAATGAGCAATACTTCAGTTGGAA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACTGTCCATCAGCAAATaGATTCACTGTAACAGCTTG +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELSISK*IHCNSL
Trigger: CAAGCTGTTACAGTGAATCCATTTGCTGATGGACAG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAATTGTTACAGGCAACTaGTCACCCTCAAGAAAAAGA +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEIVTGN*SPSRKR
Trigger: TCTTTTTCTTGAGGGTGATCAGTTGCCTGTAACAAT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACCTGTTTTCTTCAAATaGTGCATGCGATGTACTAAT +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEPVFFK*CMRCTN
Trigger: ATTAGTACATCGCATGCATCATTTGAAGAAAACAGG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATTCCAACTGAAGTATTaGTCATTTCCTAATACACTG +
Preference number: 2 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEFQLKY*SFPNTL
Trigger: CAGTGTATTAGGAAATGAGCAATACTTCAGTTGGAA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR CAA 90 bp AAAGCCCTTTCATACATCTCCTTGAAGATTTCTATAACAAATTCCTaGCAACATCTTTCCACCATCACAAATCTTCCCACCTTAAAGCTA +
Preference number: 2 (lower is better)
Translates to: KALSYISLKISITNS*QHLSTITNLPTLKL
Trigger: TAGCTTTAAGGTGGGAAGATTTGTGATGGTGGAAAGATGTTGCAAGGAATTTGTTATAGAAATCTTCAAGGAGATGTATGAAAGGGCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR GCA 72 bp GCTCCCAGTGTGCCAGCACTACGATTTATACAGATGTaGGTGCACACAGTTCTCAAGTCCAGGTGCGCTCAG +
Preference number: 3 (lower is better)
Translates to: APSVPALRFIQM*VHTVLKSRCAQ
Trigger: CTGAGCGCACCTGGACTTGAGAACTGTGTGCACGCACATCTGTATAAATCGTAGTGCTGGCACACTGGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR GCA 72 bp ACACTGGCCCCTTCAACATCACCCACACACTGCGACTaGTCCTCTTCCTTAGTTTCTGCTGCTGTGACTGGT +
Preference number: 3 (lower is better)
Translates to: TLAPSTSPTHCD*SSSLVSAAVTG
Trigger: ACCAGTCACAGCAGCAGAAACTAAGGAAGAGGAGCAGTCGCAGTGTGTGGGTGATGTTGAAGGGGCCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp GCAGAGAGCTCGGCATTAACTGCATGGCAGCGTCAGTaGATCCTTCTGTTGCATGGGTTGGGATTTCCACCA +
Preference number: 3 (lower is better)
Translates to: AESSALTAWQRQ*ILLLHGLGFPP
Trigger: TGGTGGAAATCCCAACCCATGCAACAGAAGGATTCACTGACGCTGCCATGCAGTTAATGCCGAGCTCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CCA 72 bp ACCGGTGTTTTCTTGTTGGGCTTCTGGAATATGAGATaGTACACTCTCTGGCCCATGAAGCACGGGCACGTC +
Preference number: 3 (lower is better)
Translates to: TGVFLLGFWNMR*YTLWPMKHGHV
Trigger: GACGTGCCCGTGCTTCATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp ACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTCGCAGGGTGGTGCTTTTCTGCTaGGTGAAAGTCAGGGTCGCT +
Preference number: 3 (lower is better)
Translates to: TRLLNLLQGLLMIFNSRRVVLFC*VKVRVA
Trigger: AGCGACCCTGACTTTCACCAAGCAGAAAAGCACCAC...CCTGCGAGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp TGCAGTACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTGGGACCTGGCTCTTCTaGGGTCTGTTCACCTACGTC +
Preference number: 3 (lower is better)
Translates to: CSTRLLNLLQGLLMIFNSGTWLF*GLFTYV
Trigger: GACGTAGGTGAACAGACCCAAGAAGAGCCAGGTCCC...AGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGTGGTGCTTTTCTGCTaGGTGAAAGTCAGGGTCGCT +
Preference number: 3 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKVVLFC*VKVRVA
Trigger: AGCGACCCTGACTTTCACCAAGCAGAAAAGCACCAC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCACAGCTTTCTCTGCTaGCACAGCCTGAGCTGTTGT +
Preference number: 3 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKHSFLC*HSLSCC
Trigger: ACAACAGCTCAGGCTGTGCAAGCAGAGAAAGCTGTG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp TTGAGGGCTTCTTTAGCAGCACTCTCACCAAAACTCTaGCCCGAATCGAGTGTCTGCTGCCCTATCTCAGAA +
Preference number: 3 (lower is better)
Translates to: LRASLAALSPKL*PESSVCCPISE
Trigger: TTCTGAGATAGGGCAGCAGACACTCGATTCGGGTCAGAGTTTTGGTGAGAGTGCTGCTAAAGAAGCCCTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGCACAGCCTGAGCTGTaGTGTCCATATGTGAAAGCT +
Preference number: 3 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKAQPEL*CPYVKA
Trigger: AGCTTTCACATATGGACACAACAGCTCAGGCTGTGC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp TGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTaGAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTA +
Preference number: 3 (lower is better)
Translates to: CFILFLWVRGLA*RNCKSVSHFWL
Trigger: TAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
3UTR GCA 72 bp GGGCAGCAAATGTTAAGCACAATCAAGCTCCCAGTGTaGCAGCACTACGATTTATACAGATGTGCGTGCACA +
Preference number: 3 (lower is better)
Translates to: GQQMLSTIKLPV*QHYDLYRCACT
Trigger: TGTGCACGCACATCTGTATAAATCGTAGTGCTGGCACACTGGGAGCTTGATTGTGCTTAACATTTGCTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR CCA 72 bp AACAGCTTGAGGACCGGTGTTTTCTTGTTGGGCTTCTaGAATATGAGATGGTACACTCTCTGGCCCATGAAG +
Preference number: 3 (lower is better)
Translates to: NSLRTGVFLLGF*NMRWYTLWPMK
Trigger: CTTCATGGGCCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp AGAAGGGGCCCCAGGAGAGAGCTTTATAGTGTCTCATCCACTTCAATGAAGATGCCTTTAGGGGTTTCTTaGAGGGCTTCTTTAGCAGCA +
Preference number: 3 (lower is better)
Translates to: RRGPRRELYSVSSTSMKMPLGVS*RASLAA
Trigger: TGCTGCTAAAGAAGCCCTCAAAGAAACCCCTAAAGG...CATCTTCATTGAAGTGGATGAGACACTATAAAGCTCTCTCCTGGGGCCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp TATCAGTTGGCTCACTGTGTTCCTTCTGAGGTTTTGAGGTTGCATGTGTGCTCTTTCTCGCAGGTAGGATaGCTTCTTGAGAAACACTGG +
Preference number: 3 (lower is better)
Translates to: YQLAHCVPSEVLRLHVCSFSQVG*LLEKHW
Trigger: CCAGTGTTTCTCAAGAAGCAATCCTACCTGCGAGAA...AGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGATGGTCAGAGGGGGTTTaGAAGAGGATGTCACGATGT +
Preference number: 3 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRWSEGV*KRMSRC
Trigger: ACATCGTGACATCCTCTTCAAAACCCCCTCTGACCA...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp CTCTGCTTGCACAGCCTGAGCTGTTGTGTCCATATGTaGAAGCTGATGTTCAACAACAGTCATGTCTGCAAC +
Preference number: 3 (lower is better)
Translates to: LCLHSLSCCVHM*KLMFNNSHVCN
Trigger: GTTGCAGACATGACTGTTGTTGAACATCAGCTTTCACATATGGACACAACAGCTCAGGCTGTGCAAGCAGAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp GATGATCCTGTATCAGTTGGCTCACTGTGTTCCTTCTaGGGTTTTGAGGTTGCATGTGTGCTCTCTGAGGTA +
Preference number: 3 (lower is better)
Translates to: DDPVSVGSLCSF*GFEVACVLSEV
Trigger: TACCTCAGAGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATACAGGATCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CCA 72 bp AGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTaGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCT +
Preference number: 3 (lower is better)
Translates to: SSASFCFYGSEG*PEGTASQCPIS
Trigger: AGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
3UTR-3UTR CAA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGTTCATCTTCTCCATCTaGCTGTCCATCAGCAAATGG +
Preference number: 3 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLFIFSI*LSISKW
Trigger: CCATTTGCTGATGGACAGCAAGATGGAGAAGATGAA...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGACCAGTCTTAATTGCTaGATATTTCCAAATGCAGGG +
Preference number: 3 (lower is better)
Translates to: AAATRTTWATQFKKNLLWTSLNC*IFPNAG
Trigger: CCCTGCATTTGGAAATATCAAGCAATTAAGACTGGT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp TGCAGTACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTACCAGTCTTAATTGCTaGATATTTCCAAATGCAGGG +
Preference number: 3 (lower is better)
Translates to: CSTRLLNLLQGLLMIFNSTSLNC*IFPNAG
Trigger: CCCTGCATTTGGAAATATCAAGCAATTAAGACTGGT...AGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCATGGTCACTTGCATTaGAATAATGGTGGTAAACAC +
Preference number: 3 (lower is better)
Translates to: AAATRTTWATQFKKNLLWHGHLH*NNGGKH
Trigger: GTGTTTACCACCATTATTCAAATGCAAGTGACCATG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR TCA 72 bp TACACACGCATCTTTGATTTCATCAAGAGATCCAGATaGTCCTGTATCAGTTGGCTCACTGTGTTCCTTCTG +
Preference number: 3 (lower is better)
Translates to: YTRIFDFIKRSR*SCISWLTVFLL
Trigger: CAGAAGGAACACAGTGAGCCAACTGATACAGGATCATCTGGATCTCTTGATGAAATCAAAGATGCGTGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGGTGGAGTTTCACACTTaGCTTTCATATTGTTACAGG +
Preference number: 3 (lower is better)
Translates to: WAHFYTLLLARADQKKPEVEFHT*LSYCYR
Trigger: CCTGTAACAATATGAAAGCAAAGTGTGAAACTCCAC...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGAGTTCGACCCTTGTTaGCTTAGAAACTTGAAAAGT +
Preference number: 3 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSREFDPC*LRNLKS
Trigger: ACTTTTCAAGTTTCTAAGCAAACAAGGGTCGAACTC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCTTCTGTTGCATGGGTaGGGATTTCCACCAGAGTTA +
Preference number: 3 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNLLLHG*GFPPEL
Trigger: TAACTCTGGTGGAAATCCCAACCCATGCAACAGAAG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp AGTTTTCTCTTCTTTATCAGATACTATCTCACTCTGAGGCAATTGAGCCATGTTTCTGAGGTTTTGAGGTaGCATGTGTGCTCTCTGAGG +
Preference number: 3 (lower is better)
Translates to: SFLFFIRYYLTLRQLSHVSEVLR*HVCSLR
Trigger: CCTCAGAGAGCACACATGCAACCTCAAAACCTCAGA...AACATGGCTCAATTGCCTCAGAGTGAGATAGTATCTGATAAAGAAGAGAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp GAGGCAATTGAGCCATGTTTTCTACACACGCATCTTTaGTTTCATCAAGAGATCCAGATGATCCTGTATCAG +
Preference number: 3 (lower is better)
Translates to: EAIEPCFLHTHL*FHQEIQMILYQ
Trigger: CTGATACAGGATCATCTGGATCTCTTGATGAAATCAAAGATGCGTGTGTAGAAAACATGGCTCAATTGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp ATCAGATACTATCTCACTCTGAGGCAATTGAGCCATGTTTTCTACACACGCATCCACTTTGCTTTCATATaGTTACAGGCAACTGATCAC +
Preference number: 3 (lower is better)
Translates to: IRYYLTLRQLSHVFYTRIHFAFI*LQATDH
Trigger: GTGATCAGTTGCCTGTAACAATATGAAAGCAAAGTG...GATGCGTGTGTAGAAAACATGGCTCAATTGCCTCAGAGTGAGATAGTATCTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGTGGAGTTTCACACTTaGCTTTCATATTGTTACAGG +
Preference number: 3 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEVEFHT*LSYCYR
Trigger: CCTGTAACAATATGAAAGCAAAGTGTGAAACTCCAC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATACACTGAACAGTTTTaGAATCTTAGGCACATCCTG +
Preference number: 3 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEYTEQF*NLRHIL
Trigger: CAGGATGTGCCTAAGATTCAAAAACTGTTCAGTGTA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp ATCAGATACTATCTCACTCTGAGGCAATTGAGCCATGTTTTCTACACACGCATCTCTAATTCTACTGCTTaGGAATCATCTCCTTCAGTT +
Preference number: 3 (lower is better)
Translates to: IRYYLTLRQLSHVFYTRISNSTA*ESSPSV
Trigger: AACTGAAGGAGATGATTCCAAAGCAGTAGAATTAGA...GATGCGTGTGTAGAAAACATGGCTCAATTGCCTCAGAGTGAGATAGTATCTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR TCA 72 bp AAGTATTGCTCATTTCCTAATACACTGAACAGTTTTTaGATCTTAGGCACATCCTGCCTAAGCAGCTGCTAC +
Preference number: 3 (lower is better)
Translates to: KYCSFPNTLNSF*ILGTSCLSSCY
Trigger: GTAGCAGCTGCTTAGGCAGGATGTGCCTAAGATTCAAAAACTGTTCAGTGTATTAGGAAATGAGCAATACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATTGGAAGCATTTAATTaGAACCAGGGGAAAAACTGT +
Preference number: 3 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELEAFN*NQGKNC
Trigger: ACAGTTTTTCCCCTGGTTCAAATTAAATGCTTCCAA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTACACTGAACAGTTTTaGAATCTTAGGCACATCCTG +
Preference number: 3 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNYTEQF*NLRHIL
Trigger: CAGGATGTGCCTAAGATTCAAAAACTGTTCAGTGTA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
3UTR GCA 72 bp AAAAACACCCAAGTTCATAATGAGGACCTCACTGGCTaGCTTATTTTCTGCTTTAACATCAGATTCATGTTC +
Preference number: 3 (lower is better)
Translates to: KNTQVHNEDLTG*LIFCFNIRFMF
Trigger: GAACATGAATCTGATGTTAAAGCAGAAAATAAGGCAGCCAGTGAGGTCCTCATTATGAACTTGGGTGTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCCACGCTGGGGATTaGGAGCGGCGGAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQVHAGD*ERRSPW
Trigger: CCAGGGGCTCCGCCGCTCCCAATCCCCAGCGTGGAC...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTCGGAGCTGACTCGGTaGCAGGCTCCGGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQSELTR*QAPEAW
Trigger: CCAGGCCTCCGGAGCCTGCCACCGAGTCAGCTCCGA...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTGCATGCGCTGCCCTGTaGCTCCTCCTCGCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: CFYGSEGWPEGTASQCPIACAAL*LLLAGR
Trigger: TCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGC...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTCGGAGCTGACTCGGTaGCAGGCTCCGGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSELTR*QAPEAW
Trigger: CCAGGCCTCCGGAGCCTGCCACCGAGTCAGCTCCGA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCCCGGGAGCCTGTTCCTaGGGTTCTGCTCCCCCGGAA +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVPGACS*GSAPPE
Trigger: TTCCGGGGGAGCAGAACCCCAGGAACAGGCTCCCGG...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCCCCCGGAATCCACTaGAGGCACATCTGTGGGCTC +
Preference number: 4 (lower is better)
Translates to: CFYGSEGWPEGTASQCPISPGIH*RHICGL
Trigger: GAGCCCACAGATGTGCCTGCAGTGGATTCCGGGGGA...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGGCCTGGGAGCCTCTaGTCCACGCTGGGGATTGGG +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGRPGSL*STLGIG
Trigger: CCCAATCCCCAGCGTGGACCAGAGGCTCCCAGGCCT...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCACCTCCTCTCTGCATaGGCTGCCCTGTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKHLLSA*AALWLL
Trigger: GAGGAGCCACAGGGCAGCGCATGCAGAGAGGAGGTG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAACACCTCCTCTCTGCATaGGCTGCCCTGTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQHLLSA*AALWLL
Trigger: GAGGAGCCACAGGGCAGCGCATGCAGAGAGGAGGTG...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTGCTTGGTCACTGTCCTaGTGTAGCATGGCGGCCTCC +
Preference number: 4 (lower is better)
Translates to: EGWPEGTASQCPISGYFIAWSLS*CSMAAS
Trigger: GGAGGCCGCCATGCTACAGCAGGACAGTGACCAAGC...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGGTCCACGCTGGGGATTaGGAGCGGCGGAGCCCCTGG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQVHAGD*ERRSPW
Trigger: CCAGGGGCTCCGCCGCTCCCAATCCCCAGCGTGGAC...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATCAGGCTCCGGAGGCCTaGGAGCCTCTGGTCCACGCT +
Preference number: 4 (lower is better)
Translates to: GLKELQVSVPFLAISLAYQAPEA*EPLVHA
Trigger: AGCGTGGACCAGAGGCTCCCAGGCCTCCGGAGCCTG...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTGGAAGCGGCATCCCTTaGTCTGTTTCATGGCGTCCC +
Preference number: 4 (lower is better)
Translates to: CFYGSEGWPEGTASQCPIGSGIP*SVSWRP
Trigger: GGGACGCCATGAAACAGACCAAGGGATGCCGCTTCC...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCTGCCTCAGGCTGCCCTaGGGAATGTTCCTCTGGTTC +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVCLRLP*GMFLWF
Trigger: GAACCAGAGGAACATTCCTCAGGGCAGCCTGAGGCA...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCTCCACAGGAGCGCCTaGTGCCTTTCCTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKLHRSA*CLSSLG
Trigger: TCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCTGCCACCTCCTCTCTaGATGCGCTGCCCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWLPPPL*MRCPVA
Trigger: AGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGCCACCTCCTCTCTaGATGCGCTGCCCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGLPPPL*MRCPVA
Trigger: AGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAG...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGCTCGACTCCACTaGCACCTCCTCTCTGCATGC +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVSARLH*HLLSAC
Trigger: GCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACT...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTACCAGGCCTGACATTTaGCTTCACGCTAAGGCGTGC +
Preference number: 4 (lower is better)
Translates to: CFYGSEGWPEGTASQCPITRPDI*LHAKAC
Trigger: GCACGCCTTAGCGTGAAGCCAAATGTCAGGCCTGGT...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGGTGGCTCCTCCTCGCTaGCAGACTGCTCCACAGGAG +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWVAPPR*QTAPQE
Trigger: CTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCAC...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAACAGGAGCTCTCAGCATaGGCCATGTCAGCAGAGGCA +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQQELSA*AMSAEA
Trigger: TGCCTCTGCTGACATGGCTCATGCTGAGAGCTCCTG...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGCACCTCTTCCTTCTaGGCAGGAGCTCTCAGCATG +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVSTSSF*AGALSM
Trigger: CATGCTGAGAGCTCCTGCTCAGAAGGAAGAGGTGCT...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTCGCAGGTTTGGTCTTGGTCTCTaGAGTCGACCCCTCACTGGG +
Preference number: 4 (lower is better)
Translates to: TRLLNLLQGLLMIFNSRRFGLGL*SRPLTG
Trigger: CCCAGTGAGGGGTCGACTTCAGAGACCAAGACCAAA...CCTGCGAGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTGGTCCAGCGTTCGGCTaGGCATCGTTTCTGTCAGAA +
Preference number: 4 (lower is better)
Translates to: EGWPEGTASQCPISGYFIGPAFG*ASFLSE
Trigger: TTCTGACAGAAACGATGCTCAGCCGAACGCTGGACC...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGACACACCTGAGCTGCTaGACTCTCAGGACTCCCAGC +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLTHLSC*TLRTPS
Trigger: GCTGGGAGTCCTGAGAGTTCAGCAGCTCAGGTGTGT...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTCTGTGAGGGGGCACTaGCAGAAGGCTGAACAAGAC +
Preference number: 4 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQSVRGH*QKAEQD
Trigger: GTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGA...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGATCCCAAAGGCCTTCTaGCAGGTCTGGTCAGAGGGG +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLIPKAF*QVWSEG
Trigger: CCCCTCTGACCAGACCTGGCAGAAGGCCTTTGGGAT...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCAGGCTCCGGAGGCCTaGGAGCCTCTGGTCCACGCT +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSQAPEA*EPLVHA
Trigger: AGCGTGGACCAGAGGCTCCCAGGCCTCCGGAGCCTG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGCTGCAGGCACATCTGTaGGCTCCGCTGGCTTCGGAG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRLQAHL*APLASE
Trigger: CTCCGAAGCCAGCGGAGCCCACAGATGTGCCTGCAG...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGTGGCTCCTCCTCGCTaGCAGACTGCTCCACAGGAG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRVAPPR*QTAPQE
Trigger: CTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCAC...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCGGAGAGAGAGCAGCTTaGTCACTGTCCTGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVGERAA*SLSCCS
Trigger: GCTACAGCAGGACAGTGACCAAGCTGCTCTCTCTCC...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp AGAAGGGGCCCCAGGAGAGAGCTTTATAGTGTCTCATCCACTTCAATGAAGATGGGTCCAGCGTTCGGCTaGGCATCGTTTCTGTCAGAA +
Preference number: 4 (lower is better)
Translates to: RRGPRRELYSVSSTSMKMGPAFG*ASFLSE
Trigger: TTCTGACAGAAACGATGCTCAGCCGAACGCTGGACC...CATCTTCATTGAAGTGGATGAGACACTATAAAGCTCTCTCCTGGGGCCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGAGAAACCTGAGCTGCTaGACTCTCAGGACTCCCAGC +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKRNLSC*TLRTPS
Trigger: GCTGGGAGTCCTGAGAGTTCAGCAGCTCAGGTTTCT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAACAGTGCTCACACACCTaGGCTGCTGAACTCTCAGGA +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQQCSHT*AAELSG
Trigger: TCCTGAGAGTTCAGCAGCTCAGGTGTGTGAGCACTG...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGATGGCGGCCTCCACTTTaGAGGCTTCGGATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGWRPPL*RLRISS
Trigger: GGAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGCCA...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCCTGACCAATATAGGTaGTGGCAGCAGAGAGCTCGG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKPDQYR*WQQRAR
Trigger: CCGAGCTCTCTGCTGCCAGCACCTATATTGGTCAGG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTAGGCCTGGGAGCCTCTaGTCCACGCTGGGGATTGGG +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSRPGSL*STLGIG
Trigger: CCCAATCCCCAGCGTGGACCAGAGGCTCCCAGGCCT...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGTTTTTCCATTGTCAGGCTCCGGAGGCCTaGGAGCCTCTGGTCCACGCT +
Preference number: 4 (lower is better)
Translates to: ERSGGLWLSFVENLFFHCQAPEA*EPLVHA
Trigger: AGCGTGGACCAGAGGCTCCCAGGCCTCCGGAGCCTG...ACAATGGAAAAACAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp CTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTCGGAGCTGACTCGGTaGCAGGCTCCGGAGGCCTGG +
Preference number: 4 (lower is better)
Translates to: LIVIFERSGGLWLSFVENSELTR*QAPEAW
Trigger: CCAGGCCTCCGGAGCCTGCCACCGAGTCAGCTCCGA...ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCTGCAGGCACATCTGTaGGCTCCGCTGGCTTCGGAG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQLQAHL*APLASE
Trigger: CTCCGAAGCCAGCGGAGCCCACAGATGTGCCTGCAG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCCGGGAGCCTGTTCCTaGGGTTCTGCTCCCCCGGAA +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSPGACS*GSAPPE
Trigger: TTCCGGGGGAGCAGAACCCCAGGAACAGGCTCCCGG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp AAGTCTCTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTACCGGGAGCCTGTTCCTaGGGTTCTGCTCCCCCGGAA +
Preference number: 4 (lower is better)
Translates to: KSLIVIFERSGGLWLSFVPGACS*GSAPPE
Trigger: TTCCGGGGGAGCAGAACCCCAGGAACAGGCTCCCGG...TACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAGAGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTATCGAGGAACCAGAAGTaGCCCATCATCCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLSRNQK*PIIHLL
Trigger: GAGGAGGTGGATGATGGGCCACTTCTGGTTCCTCGA...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGCATGCGCTGCCCTGTaGCTCCTCCTCGCTGGCAGA +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEACAAL*LLLAGR
Trigger: TCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGATTTCCTCCCCGACCTaGATCTCTCCAGACCCTCTC +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLISSPT*ISPDPL
Trigger: GAGAGGGTCTGGAGAGATCCAGGTCGGGGAGGAAAT...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACCGTGCTTCCATCACTaGGACCTGGCTCTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEPCFHH*DLALLG
Trigger: CCCAAGAAGAGCCAGGTCCCAGTGATGGAAGCACGG...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
3UTR CAA 72 bp CCAAAGGCCTTCTGCCAGGTCTGGTCAGAGGGGGTTTaGAAGAGGATGTCACGATGTCTCTCTGTTCAGAAT +
Preference number: 4 (lower is better)
Translates to: PKAFCQVWSEGV*KRMSRCLSVQN
Trigger: ATTCTGAACAGAGAGACATCGTGACATCCTCTTCAAAACCCCCTCTGACCAGACCTGGCAGAAGGCCTTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTACTCACTTGGCACTCTaGCACTCTGGAGGACATGTC +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLATHLAL*HSGGHV
Trigger: GACATGTCCTCCAGAGTGTCAGAGTGCCAAGTGAGT...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTTCTGCTTGCACAGCCTaGGCTGTTGTGTCCATATGT +
Preference number: 4 (lower is better)
Translates to: EGWPEGTASQCPISGYFISACTA*AVVSIC
Trigger: ACATATGGACACAACAGCTCAGGCTGTGCAAGCAGA...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGCAGTACCCGACTCTTaGACCTCTTGCAAGGTCTCC +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEAVPDS*TSCKVS
Trigger: GGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGC...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAAGTGCTCGACTCCACTaGCACCTCCTCTCTGCATGC +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRSARLH*HLLSAC
Trigger: GCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTACATCTGCCTCAGGCTaGCCTGAGGAATGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLATSASG*PEECSS
Trigger: AGAGGAACATTCCTCAGGGCAGCCTGAGGCAGATGT...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGGCCTTTTCCCTTGCTTaGAGAGAAAGCTGGGTGTCA +
Preference number: 4 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQAFSLA*RESWVS
Trigger: TGACACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGC...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCAGGTCACCTCGTTCTaGTGCATTCCCAGACCTGAC +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGQVTSF*CIPRPD
Trigger: GTCAGGTCTGGGAATGCAGCAGAACGAGGTGACCTG...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGACCAGGCCTGACATTTaGCTTCACGCTAAGGCGTGC +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWTRPDI*LHAKAC
Trigger: GCACGCCTTAGCGTGAAGCCAAATGTCAGGCCTGGT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATAGGCCTGGGAGCCTCTaGTCCACGCTGGGGATTGGG +
Preference number: 4 (lower is better)
Translates to: LIVIFERSGGLWLSFVENRPGSL*STLGIG
Trigger: CCCAATCCCCAGCGTGGACCAGAGGCTCCCAGGCCT...ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAAGCTGGAGTAGGGTTTaGCTGTGGTGCATCGTGATC +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQSWSRV*LWCIVI
Trigger: GATCACGATGCACCACAGCCAAACCCTACTCCAGCT...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGCTCCCATCTCCCCTaGGCAAGTATCTCTTCCAAT +
Preference number: 4 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQCSHLP*ASISSN
Trigger: ATTGGAAGAGATACTTGCCCAGGGGAGATGGGAGCA...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTGCTGCCTTTCCTCTCTaGGAAGTTCCTCCTCCAATC +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAAAFPL*EVPPPI
Trigger: GATTGGAGGAGGAACTTCCCAGAGAGGAAAGGCAGC...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGATTTCCTCCCCGACCTaGATCTCTCCAGACCCTCTC +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWISSPT*ISPDPL
Trigger: GAGAGGGTCTGGAGAGATCCAGGTCGGGGAGGAAAT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTCGCAGTCTCATCCCTaGAACCTTCTGATGGTCCAG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSQSHP*NLLMVQ
Trigger: CTGGACCATCAGAAGGTTCCAGGGATGAGACTGCGA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGTTTGGTCTTGGTCTCTaGAGTCGACCCCTCACTGGG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRFGLGL*SRPLTG
Trigger: CCCAGTGAGGGGTCGACTTCAGAGACCAAGACCAAA...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGACTCACTTGGCACTCTaGCACTCTGGAGGACATGTC +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWTHLAL*HSGGHV
Trigger: GACATGTCCTCCAGAGTGTCAGAGTGCCAAGTGAGT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTCCTTCTGCAGCAGGTaGTCTTCTGCTGTTAGTGCT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSFCSR*SSAVSA
Trigger: AGCACTAACAGCAGAAGATCACCTGCTGCAGAAGGA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTCCTTCTGCAGCAGGTaGTCTTCTGCTGTTAGTGCT +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLSFCSR*SSAVSA
Trigger: AGCACTAACAGCAGAAGATCACCTGCTGCAGAAGGA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCTGGTTCAGGGGATCTaGGACCAACAGGTACAAACA +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKLVQGI*DQQVQT
Trigger: TGTTTGTACCTGTTGGTCTCAGATCCCCTGAACCAG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGCAGTACCCGACTCTTaGACCTCTTGCAAGGTCTCC +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRAVPDS*TSCKVS
Trigger: GGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAATGCATGTGTGCTCTCTaGGGTAGGGAAAATGCCTTG +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQCMCAL*GRENAL
Trigger: CAAGGCATTTTCCCTACCTCAGAGAGCACACATGCA...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTCCCCCGGAATCCACTaGAGGCACATCTGTGGGCTC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSSPGIH*RHICGL
Trigger: GAGCCCACAGATGTGCCTGCAGTGGATTCCGGGGGA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGGATGTCAATCATTTCTaGTCCCATCTCCCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELDVNHF*SHLPWA
Trigger: TGCCCAGGGGAGATGGGAGCAGAAATGATTGACATC...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGCTCCACAGGAGCGCCTaGTGCCTTTCCTCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQLHRSA*CLSSLG
Trigger: TCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAG...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGTTCCCAGGCACACAGTaGTCTGCTTCTATGGTTGCT +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELFPGTQ*SASMVA
Trigger: AGCAACCATAGAAGCAGAGCACTGTGTGCCTGGGAA...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGCTTGGTCACTGTCCTaGTGTAGCATGGCGGCCTCC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEAWSLS*CSMAAS
Trigger: GGAGGCCGCCATGCTACAGCAGGACAGTGACCAAGC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGACAAGGTCTCCTCCACTaGTTCTTCCTCCACAGCAGC +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRQGLLH*FFLHSS
Trigger: GCTGCTGTGGAGGAAGAAGCAGTGGAGGAGACCTTG...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGCAAGGTCTCCTCCACTaGTTCTTCCTCCACAGCAGC +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRQGLLH*FFLHSS
Trigger: GCTGCTGTGGAGGAAGAAGCAGTGGAGGAGACCTTG...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTACATCACCCACACACTaGGACTGCTCCTCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLATSPTH*DCSSSL
Trigger: TAAGGAAGAGGAGCAGTCGCAGTGTGTGGGTGATGT...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCCCGAATCGAGTGTCTaGTGCCCTATCTCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKPESSV*CPISEE
Trigger: TTCTTCTGAGATAGGGCAGCAGACACTCGATTCGGG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCCCGAATCGAGTGTCTaGTGCCCTATCTCAGAAGAA +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAPESSV*CPISEE
Trigger: TTCTTCTGAGATAGGGCAGCAGACACTCGATTCGGG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATCCTGACCAATATAGGTaGTGGCAGCAGAGAGCTCGG +
Preference number: 4 (lower is better)
Translates to: GLKELQVSVPFLAISLAYPDQYR*WQQRAR
Trigger: CCGAGCTCTCTGCTGCCAGCACCTATATTGGTCAGG...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGTTTTTCCATTGTCTGCAGGCACATCTGTaGGCTCCGCTGGCTTCGGAG +
Preference number: 4 (lower is better)
Translates to: ERSGGLWLSFVENLFFHCLQAHL*APLASE
Trigger: CTCCGAAGCCAGCGGAGCCCACAGATGTGCCTGCAG...ACAATGGAAAAACAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTAGGGTTTGGCTGTaGTGCATCGTGATCAACTGT +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVSRVWL*CIVINC
Trigger: ACAGTTGATCACGATGCACCACAGCCAAACCCTACT...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTATTGCCTATCTCTCGTTaGGGTGGGAGCCAAGGATTT +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLLPISR*GGSQGF
Trigger: AAATCCTTGGCTCCCACCCCAACGAGAGATAGGCAA...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGAATCAGACACAGTTTTaGCACCTGGGCTCTCTCCGT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKNQTQF*HLGSLR
Trigger: ACGGAGAGAGCCCAGGTGCCAAAACTGTGTCTGATT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGGCTGCCTTTCCTCTCTaGGAAGTTCCTCCTCCAATC +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWAAFPL*EVPPPI
Trigger: GATTGGAGGAGGAACTTCCCAGAGAGGAAAGGCAGC...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATCGCAGTCTCATCCCTaGAACCTTCTGATGGTCCAG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKESQSHP*NLLMVQ
Trigger: CTGGACCATCAGAAGGTTCCAGGGATGAGACTGCGA...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTTCGCTTTCTTCTCTGTaGAGAAGCAGAGGACAATGT +
Preference number: 4 (lower is better)
Translates to: EGWPEGTASQCPISGYFISLSSL*RSRGQC
Trigger: ACATTGTCCTCTGCTTCTTCACAGAGAAGAAAGCGA...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTAAGACTGGATGTGCTTaGCACTCGCTTTCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAKTGCA*HSLSSL
Trigger: CAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTT...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCAGGAGCTCTCAGCATaGGCCATGTCAGCAGAGGCA +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSQELSA*AMSAEA
Trigger: TGCCTCTGCTGACATGGCTCATGCTGAGAGCTCCTG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATGCCTCAGGCTGCCCTaGGGAATGTTCCTCTGGTTC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNECLRLP*GMFLWF
Trigger: GAACCAGAGGAACATTCCTCAGGGCAGCCTGAGGCA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGAGCAAGACTCCACATaGCCTAAGTGGCTGGATATG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEEQDST*PKWLDM
Trigger: CATATCCAGCCACTTAGGTCATGTGGAGTCTTGCTC...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGAAGGTACATTATGTTaGGGAGAGAGAGCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKEGTLC*GERAAW
Trigger: CCAAGCTGCTCTCTCTCCTCAACATAATGTACCTTC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTGAAGGTACATTATGTTaGGGAGAGAGAGCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAEGTLC*GERAAW
Trigger: CCAAGCTGCTCTCTCTCCTCAACATAATGTACCTTC...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCTCTTCATCCTCTTTCTaGGAAGCCCGAAGAGTCACC +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGSSSSF*EARRVT
Trigger: GGTGACTCTTCGGGCTTCTCAGAAAGAGGATGAAGA...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGGTTCAGGGGATCTaGGACCAACAGGTACAAACA +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGLVQGI*DQQVQT
Trigger: TGTTTGTACCTGTTGGTCTCAGATCCCCTGAACCAG...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCCCCCTGTCCAGGAATaGTCTCTGACTGCAATACTA +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWPPVQE*SLTAIL
Trigger: TAGTATTGCAGTCAGAGATCATTCCTGGACAGGGGG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGAATTCCTGGAACAAGTaGGGACTTTTTGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKNSWNK*GLFGRR
Trigger: CCTCCTGCCAAAAAGTCCTCACTTGTTCCAGGAATT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGTTCCTTCTGAGGTTTTaGGGTTGCATGTGTGCTCTC +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELFLLRF*GCMCAL
Trigger: GAGAGCACACATGCAACCTCAAAACCTCAGAAGGAA...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCTCACTGTGTTCCTTCTaGGGTTTTGAGGTTGCATGT +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVSLCSF*GFEVAC
Trigger: ACATGCAACCTCAAAACCTCAGAAGGAACACAGTGA...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTCCCCCGGAATCCACTaGAGGCACATCTGTGGGCTC +
Preference number: 4 (lower is better)
Translates to: LIVIFERSGGLWLSFVENSPGIH*RHICGL
Trigger: GAGCCCACAGATGTGCCTGCAGTGGATTCCGGGGGA...ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCCTCCCTTTCTTCAGTaGTATCTGTCGTGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWPPFLQ*YLSCLV
Trigger: CACCAGACACGACAGATAGCACTGAAGAAAGGGAGG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGCACAGGAGCGCCTGCTaGCTTTCCTCTCTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQHRSAC*LSSLGS
Trigger: ACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTG...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAACATCTGCCTCAGGCTaGCCTGAGGAATGTTCCTCT +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRTSASG*PEECSS
Trigger: AGAGGAACATTCCTCAGGGCAGCCTGAGGCAGATGT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTTCCCAGGCACACAGTaGTCTGCTTCTATGGTTGCT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWFPGTQ*SASMVA
Trigger: AGCAACCATAGAAGCAGAGCACTGTGTGCCTGGGAA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGATCTGCCTTTTCCCTTaGTTGCAGAGAAAGCTGGGT +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELICLFP*LQRKLG
Trigger: ACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCAGAT...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGATACACAGCTTTCTCTaGTTGCACAGCCTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKIHSFL*LHSLSC
Trigger: ACAGCTCAGGCTGTGCAAGCAGAGAAAGCTGTGTAT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAATACACAGCTTTCTCTaGTTGCACAGCCTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLIHSFL*LHSLSC
Trigger: ACAGCTCAGGCTGTGCAAGCAGAGAAAGCTGTGTAT...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAATCCCAAAGGCCTTCTaGCAGGTCTGGTCAGAGGGG +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEIPKAF*QVWSEG
Trigger: CCCCTCTGACCAGACCTGGCAGAAGGCCTTTGGGAT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAAGCTGGAGTAGGGTTTaGCTGTGGTGCATCGTGATC +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRSWSRV*LWCIVI
Trigger: GATCACGATGCACCACAGCCAAACCCTACTCCAGCT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTCGATCTGGTGGCCTCTaGCTTTCATTTGTAGAAAAT +
Preference number: 4 (lower is better)
Translates to: CFYGSEGWPEGTASQCPIRSGGL*LSFVEN
Trigger: ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCG...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCGAGGAACCAGAAGTaGCCCATCATCCACCTCCTC +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSRNQK*PIIHLL
Trigger: GAGGAGGTGGATGATGGGCCACTTCTGGTTCCTCGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGAATAGGTGTCTCCTCTaGTATCCCTTCCTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKNRCLL*YPFLGG
Trigger: TCCTCCAAGGAAGGGATACCAGAGGAGACACCTATT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTAATAGGTGTCTCCTCTaGTATCCCTTCCTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLANRCLL*YPFLGG
Trigger: TCCTCCAAGGAAGGGATACCAGAGGAGACACCTATT...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCATTCACTTTATCCTGTaGAGAGCCAGTGCTGCCGTC +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGIHFIL*RASAAV
Trigger: GACGGCAGCACTGGCTCTCCACAGGATAAAGTGAAT...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCCTTGGTCTGTTTCATaGCGTCCCAAATTCTGTGAG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKPWSVS*RPKFCE
Trigger: CTCACAGAATTTGGGACGCCATGAAACAGACCAAGG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCCTTGGTCTGTTTCATaGCGTCCCAAATTCTGTGAG +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAPWSVS*RPKFCE
Trigger: CTCACAGAATTTGGGACGCCATGAAACAGACCAAGG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGGGAGAGAGAGCAGCTTaGTCACTGTCCTGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQGERAA*SLSCCS
Trigger: GCTACAGCAGGACAGTGACCAAGCTGCTCTCTCTCC...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTATTGCACATTTGGTCTTaGTCTCTGAAGTCGACCCCT +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLLHIWS*SLKSTP
Trigger: AGGGGTCGACTTCAGAGACCAAGACCAAATGTGCAA...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGGCCTTTTGCACATTTaGTCTTGGTCTCTGAAGTCG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKGLLHI*SWSLKS
Trigger: CGACTTCAGAGACCAAGACCAAATGTGCAAAAGGCC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTGGCCTTTTGCACATTTaGTCTTGGTCTCTGAAGTCG +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAGLLHI*SWSLKS
Trigger: CGACTTCAGAGACCAAGACCAAATGTGCAAAAGGCC...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAAGTTGTATTCCTGGTTaGCAAGGTCTCCTCCACTGC +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKESCIPG*QGLLHC
Trigger: GCAGTGGAGGAGACCTTGCCAACCAGGAATACAACT...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGATTCGGTATCTGTCTaGACACGGCTGCTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEDSVSV*TRLLLF
Trigger: AAAGAGAAGCAGCCGTGTTCAGACAGATACCGAATC...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTCTCATAGTCATTTTTaGACGATCTGGTGGCCTCTG +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLSHSHF*TIWWPL
Trigger: CAGAGGCCACCAGATCGTTCAAAAATGACTATGAGA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCTTAAAACCTTTGCCTaGCTATCCTGCTGTACACAG +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLALKTFA*LSCCTQ
Trigger: CTGTGTACAGCAGGATAGTCAGGCAAAGGTTTTAAG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGAGCAAGACTCCACATaGCCTAAGTGGCTGGATATG +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSREQDST*PKWLDM
Trigger: CATATCCAGCCACTTAGGTCATGTGGAGTCTTGCTC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAAGTGGCTGCTGTTCTTaGGGAAGAGGTTTGCTTAAG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKESGCCS*GRGLLK
Trigger: CTTAAGCAAACCTCTTCCTCAAGAACAGCAGCCACT...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTTTGGTCTTGGTCTCTaGAGTCGACCCCTCACTGGG +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSFGLGL*SRPLTG
Trigger: CCCAGTGAGGGGTCGACTTCAGAGACCAAGACCAAA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACACTCTTTTCTCACTaGAACCTCCAGAGGCATATC +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGTLFSH*NLQRHI
Trigger: GATATGCCTCTGGAGGTTTCAGTGAGAAAAGAGTGT...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGGTCCAGCGTTCGGCTaGGCATCGTTTCTGTCAGAA +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSGPAFG*ASFLSE
Trigger: TTCTGACAGAAACGATGCTCAGCCGAACGCTGGACC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGATTGTTTCCTCGATCTaGGCAGAAACTGGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWIVSSI*AETGSG
Trigger: CCCTGAACCAGTTTCTGCTCAGATCGAGGAAACAAT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCATTGTTTCCTCGATCTaGGCAGAAACTGGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGIVSSI*AETGSG
Trigger: CCCTGAACCAGTTTCTGCTCAGATCGAGGAAACAAT...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATCCCCCTGTCCAGGAATaGTCTCTGACTGCAATACTA +
Preference number: 4 (lower is better)
Translates to: GLKELQVSVPFLAISLAYPPVQE*SLTAIL
Trigger: TAGTATTGCAGTCAGAGATCATTCCTGGACAGGGGG...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCAATTCCTGGAACAAGTaGGGACTTTTTGGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGNSWNK*GLFGRR
Trigger: CCTCCTGCCAAAAAGTCCTCACTTGTTCCAGGAATT...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGATCAAGAGATCCAGATaGTCCTGTATCAGTTGGCTC +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKIKRSR*SCISWL
Trigger: GAGCCAACTGATACAGGATCATCTGGATCTCTTGAT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATCAAGAGATCCAGATaGTCCTGTATCAGTTGGCTC +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGIKRSR*SCISWL
Trigger: GAGCCAACTGATACAGGATCATCTGGATCTCTTGAT...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAACTGAAGACAAACTCTaGGACTGGGGTCACCTCTTC +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRTEDKL*DWGHLF
Trigger: GAAGAGGTGACCCCAGTCTCAGAGTTTGTCTTCAGT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGAAGCAGAGGACAATGTaGTGGACTCTGCAGCATTAT +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELKQRTM*WTLQHY
Trigger: ATAATGCTGCAGAGTCCAGCACATTGTCCTCTGCTT...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTCTGTGAGGGGGCACTaGCAGAAGGCTGAACAAGAC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSSVRGH*QKAEQD
Trigger: GTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTTGTGTATTTCTGCTaGAGGAGGGCTCGAATGAAC +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKELVYFC*RRARMN
Trigger: GTTCATTCGAGCCCTCCTGCAGCAGAAATACACAAG...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCACAGGAGCGCCTGCTaGCTTTCCTCTCTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNHRSAC*LSSLGS
Trigger: ACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTGGCGGCCTCCACTTTaGAGGCTTCGGATTTCTTCC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSWRPPL*RLRISS
Trigger: GGAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGCCA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGGAGGACATGTCAACTaGAACTCCACTTTCAATGTG +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKGGHVN*NSTFNV
Trigger: CACATTGAAAGTGGAGTTGCAGTTGACATGTCCTCC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTTTTCTACAGGATCTaGGTGGCCTTGACTTTCACT +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQVFYRI*VALTFT
Trigger: AGTGAAAGTCAAGGCCACGCAGATCCTGTAGAAAAC...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGCCTTTTCCCTTGCTTaGAGAGAAAGCTGGGTGTCA +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRAFSLA*RESWVS
Trigger: TGACACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTTCCTTAGTTTCTGCTaGTGTGACTGGTGCATGGCT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWFLSFC*CDWCMA
Trigger: AGCCATGCACCAGTCACAGCAGCAGAAACTAAGGAA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATTCCTTAGTTTCTGCTaGTGTGACTGGTGCATGGCT +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEFLSFC*CDWCMA
Trigger: AGCCATGCACCAGTCACAGCAGCAGAAACTAAGGAA...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAACATCACCCACACACTaGGACTGCTCCTCTTCCTTA +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRTSPTH*DCSSSL
Trigger: TAAGGAAGAGGAGCAGTCGCAGTGTGTGGGTGATGT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGAGTGAATCCTTCTGTTaGATGGGTTGGGATTTCCAC +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSESFC*MGWDFH
Trigger: GTGGAAATCCCAACCCATGCAACAGAAGGATTCACT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCAGGTCACCTCGTTCTaGTGCATTCCCAGACCTGAC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSQVTSF*CIPRPD
Trigger: GTCAGGTCTGGGAATGCAGCAGAACGAGGTGACCTG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGAGTAGGGTTTGGCTGTaGTGCATCGTGATCAACTGT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWSRVWL*CIVINC
Trigger: ACAGTTGATCACGATGCACCACAGCCAAACCCTACT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTCTCGGTCTCTTCACTaGGTGCTAAACCTGCAATGT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWSRSLH*VLNLQC
Trigger: ACATTGCAGGTTTAGCACCCAGTGAAGAGACCGAGA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGGAAGCGGCATCCCTTaGTCTGTTTCATGGCGTCCC +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNGSGIP*SVSWRP
Trigger: GGGACGCCATGAAACAGACCAAGGGATGCCGCTTCC...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TATCAGTTGGCTCACTGTGTTCCTTCTGAGGTTTTGAGGTTGCATGTGTGCTCTTTGCACATTTGGTCTTaGTCTCTGAAGTCGACCCCT +
Preference number: 4 (lower is better)
Translates to: YQLAHCVPSEVLRLHVCSLHIWS*SLKSTP
Trigger: AGGGGTCGACTTCAGAGACCAAGACCAAATGTGCAA...AGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCGCAGTCTCATCCCTaGAACCTTCTGATGGTCCAG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSQSHP*NLLMVQ
Trigger: CTGGACCATCAGAAGGTTCCAGGGATGAGACTGCGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGATCTGAGCAGAAACTaGTTCAGGGGATCTGAGACC +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRDLSRN*FRGSET
Trigger: GGTCTCAGATCCCCTGAACCAGTTTCTGCTCAGATC...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCCGTGCTTCCATCACTaGGACCTGGCTCTTCTTGGG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNPCFHH*DLALLG
Trigger: CCCAAGAAGAGCCAGGTCCCAGTGATGGAAGCACGG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAAATCCTTCTGTTGCATaGGTTGGGATTTCCACCAGA +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLNPSVA*VGISTR
Trigger: TCTGGTGGAAATCCCAACCCATGCAACAGAAGGATT...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
3UTR CAA 72 bp AGGTCTCCTCATGATCTTCAATTCTCGCAGGTAGGATaGCTTCTTGAGAAACACTGGCCCCTTCAACATCAC +
Preference number: 4 (lower is better)
Translates to: RSPHDLQFSQVG*LLEKHWPLQHH
Trigger: GTGATGTTGAAGGGGCCAGTGTTTCTCAAGAAGCAATCCTACCTGCGAGAATTGAAGATCATGAGGAGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATAGCACCTCTTCCTTCTaGGCAGGAGCTCTCAGCATG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSTSSF*AGALSM
Trigger: CATGCTGAGAGCTCCTGCTCAGAAGGAAGAGGTGCT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAGTCTCTTTTTCCATGTaGTTCTTCTCAGCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGVSFSM*FFSAAV
Trigger: AACTGCAGCTGAGAAGAATCACATGGAAAAAGAGAC...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTTTCTTCCAGGCTCTaGCACAGTATCTTCACATTG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKELSSRL*HSIFTL
Trigger: CAATGTGAAGATACTGTGTCAGAGCCTGGAAGAAAG...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAACTCACTTGGCACTCTaGCACTCTGGAGGACATGTC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNETHLAL*HSGGHV
Trigger: GACATGTCCTCCAGAGTGTCAGAGTGCCAAGTGAGT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TGCAGTACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTACACTCTTTTCTCACTaGAACCTCCAGAGGCATATC +
Preference number: 4 (lower is better)
Translates to: CSTRLLNLLQGLLMIFNSTLFSH*NLQRHI
Trigger: GATATGCCTCTGGAGGTTTCAGTGAGAAAAGAGTGT...AGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCTTCATCCTCTTTCTaGGAAGCCCGAAGAGTCACC +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSSSSF*EARRVT
Trigger: GGTGACTCTTCGGGCTTCTCAGAAAGAGGATGAAGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGATCCAGGAATGATCTCTaGCTGCAATACTATATCTCC +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGSRNDL*LQYYIS
Trigger: GGAGATATAGTATTGCAGTCAGAGATCATTCCTGGA...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTATGACTTTTATCCTCTaGATGAACATCAGGGAATAC +
Preference number: 4 (lower is better)
Translates to: CFYGSEGWPEGTASQCPIMTFIL*MNIREY
Trigger: GTATTCCCTGATGTTCATTCAGAGGATAAAAGTCAT...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCAATGTGCTGGACTCTaGAGCATTATTTTTGTCACC +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKQCAGL*SIIFVT
Trigger: GGTGACAAAAATAATGCTGCAGAGTCCAGCACATTG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTACAATGTGCTGGACTCTaGAGCATTATTTTTGTCACC +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLQCAGL*SIIFVT
Trigger: GGTGACAAAAATAATGCTGCAGAGTCCAGCACATTG...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTCTGTGAGGGGGCACTaGCAGAAGGCTGAACAAGAC +
Preference number: 4 (lower is better)
Translates to: LIVIFERSGGLWLSFVENSVRGH*QKAEQD
Trigger: GTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGA...ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR GCA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAATAGAACCATCTTCTaGCACTTTTACTCGAGGAAC +
Preference number: 4 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVNRTIF*HFYSRN
Trigger: GTTCCTCGAGTAAAAGTGGCAGAAGATGGTTCTATT...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGGCGTTTTTCCTGGAATaGTTTGTCTATTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLAFFLE*FVYSPS
Trigger: GGATGGAGAATAGACAAAGCATTCCAGGAAAAACGC...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCATTCTTGTGTATTTCTaGTGCAGGAGGGCTCGAATG +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGILVYF*CRRARM
Trigger: CATTCGAGCCCTCCTGCAGCAGAAATACACAAGAAT...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGGTCTGGACAACATTTTaGCTTGTTTCTTGTGTGACC +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELVWTTF*LVSCVT
Trigger: GGTCACACAAGAAACAAGGCAAAATGTTGTCCAGAC...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCAAACACTGGTGCTTTaGTTAATTCTTCTGGGGCAA +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAQTLVL*LILLGQ
Trigger: TTGCCCCAGAAGAATTAAGCAAAGCACCAGTGTTTG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGCTCTTCCTTAGTTTCTaGTGCTGTGACTGGTGCATG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRLFLSF*CCDWCM
Trigger: CATGCACCAGTCACAGCAGCAGAAACTAAGGAAGAG...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACCTCTTCCTCAGGTaGTCCTTTGGGCCCATTTTT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQHLFLR*SFGPIF
Trigger: AAAAATGGGCCCAAAGGAGCACCTGAGGAAGAGGTG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATACCAGGCCTGACATTTaGCTTCACGCTAAGGCGTGC +
Preference number: 4 (lower is better)
Translates to: LIVIFERSGGLWLSFVENTRPDI*LHAKAC
Trigger: GCACGCCTTAGCGTGAAGCCAAATGTCAGGCCTGGT...ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTTGCCTATCTCTCGTTaGGGTGGGAGCCAAGGATTT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQLPISR*GGSQGF
Trigger: AAATCCTTGGCTCCCACCCCAACGAGAGATAGGCAA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGACACTACATTTGGCTTTaGTCTTTGCATTCGACTCCT +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGHYIWL*SLHSTP
Trigger: AGGAGTCGAATGCAAAGACCAAAGCCAAATGTAGTG...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGAGCTTTCACTACATTTaGCTTTGGTCTTTGCATTCG +
Preference number: 4 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQSFHYI*LWSLHS
Trigger: CGAATGCAAAGACCAAAGCCAAATGTAGTGAAAGCT...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCTCATTTTCCGTTTGTaGAGGAATCACAACACAGGA +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLALIFRL*RNHNTG
Trigger: TCCTGTGTTGTGATTCCTCCACAAACGGAAAATGAG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAACTGGGAGAGTTGTCTaGACAACATTTTGCCTTGTT +
Preference number: 4 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQTGRVV*TTFCLV
Trigger: AACAAGGCAAAATGTTGTCCAGACAACTCTCCCAGT...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTTGATCCACGCCCTTTaGTCAGATTTGGTTTCGTCT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWLIHAL*SDLVSS
Trigger: AGACGAAACCAAATCTGACCAAAGGGCGTGGATCAA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCTTGATCCACGCCCTTTaGTCAGATTTGGTTTCGTCT +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGLIHAL*SDLVSS
Trigger: AGACGAAACCAAATCTGACCAAAGGGCGTGGATCAA...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGAGTTGTATTCCTGGTTaGCAAGGTCTCCTCCACTGC +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSCIPG*QGLLHC
Trigger: GCAGTGGAGGAGACCTTGCCAACCAGGAATACAACT...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCTTCTGGAATATGAGATaGTACACTCTCTGGCCCATG +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGFWNMR*YTLWPM
Trigger: CATGGGCCAGAGAGTGTACCATCTCATATTCCAGAA...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTGAGGACTTTTTaGCAGGAGGAACATGAATAC +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELQVRTF*QEEHEY
Trigger: GTATTCATGTTCCTCCTGCCAAAAAGTCCTCACTTG...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTCTCTCTGTTCAGAATTaGAAGCAGGTTCAGTTTTCT +
Preference number: 4 (lower is better)
Translates to: EGWPEGTASQCPISGYFILSVQN*KQVQFS
Trigger: AGAAAACTGAACCTGCTTCCAATTCTGAACAGAGAG...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
3UTR CAA 72 bp GATACACAGCTTTCTCTGCTTGCACAGCCTGAGCTGTaGTGTCCATATGTGAAAGCTGATGTTCAACAACAG +
Preference number: 4 (lower is better)
Translates to: DTQLSLLAQPEL*CPYVKADVQQQ
Trigger: CTGTTGTTGAACATCAGCTTTCACATATGGACACAACAGCTCAGGCTGTGCAAGCAGAGAAAGCTGTGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CAA 72 bp ATTCACTGTAACAGCTTGAGGACCGGTGTTTTCTTGTaGGGCTTCTGGAATATGAGATGGTACACTCTCTGG +
Preference number: 4 (lower is better)
Translates to: IHCNSLRTGVFL*GFWNMRWYTLW
Trigger: CCAGAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCTGTTACAGTGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
3UTR CAA 72 bp TGGATTCACTGTAACAGCTTGAGGACCGGTGTTTTCTaGTTGGGCTTCTGGAATATGAGATGGTACACTCTC +
Preference number: 4 (lower is better)
Translates to: WIHCNSLRTGVF*LGFWNMRWYTL
Trigger: GAGAGTGTACCATCTCATATTCCAGAAGCCCAACAAGAAAACACCGGTCCTCAAGCTGTTACAGTGAATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGGATTCGGTATCTGTCTaGACACGGCTGCTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQDSVSV*TRLLLF
Trigger: AAAGAGAAGCAGCCGTGTTCAGACAGATACCGAATC...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCTCCTCTTTTTCTCTTaGTTTTGGTCTTGCTCTAAC +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLALLFFS*FWSCSN
Trigger: GTTAGAGCAAGACCAAAATCAAGAGAAAAAGAGGAG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGAGTGGCTGCTGTTCTTaGGGAAGAGGTTTGCTTAAG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSGCCS*GRGLLK
Trigger: CTTAAGCAAACCTCTTCCTCAAGAACAGCAGCCACT...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGTGTTGTGTCCATATGTaGAAGCTGATGTTCAACAAC +
Preference number: 4 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELCCVHM*KLMFNN
Trigger: GTTGTTGAACATCAGCTTTCACATATGGACACAACA...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCTGCTTGCACAGCCTaGGCTGTTGTGTCCATATGT +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNESACTA*AVVSIC
Trigger: ACATATGGACACAACAGCTCAGGCTGTGCAAGCAGA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATGACCATGAGACTCACTaGTCTCTAAAGTCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: GLKELQVSVPFLAISLAYDHETH*SLKSSQ
Trigger: CTGAGAAGACTTTAGAGATCAGTGAGTCTCATGGTC...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGTTGGCAGGAGGAACATaGATACTTTCATCAGGACTG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRLAGGT*ILSSGL
Trigger: CAGTCCTGATGAAAGTATTCATGTTCCTCCTGCCAA...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATGCATGTGTGCTCTCTaGGGTAGGGAAAATGCCTTG +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNECMCAL*GRENAL
Trigger: CAAGGCATTTTCCCTACCTCAGAGAGCACACATGCA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGATCACTGTGTTCCTTCTaGGGTTTTGAGGTTGCATGT +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRSLCSF*GFEVAC
Trigger: ACATGCAACCTCAAAACCTCAGAAGGAACACAGTGA...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCTTGTGTATTTCTGCTaGAGGAGGGCTCGAATGAAC +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQLVYFC*RRARMN
Trigger: GTTCATTCGAGCCCTCCTGCAGCAGAAATACACAAG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGATGTCAATCATTTCTaGTCCCATCTCCCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEDVNHF*SHLPWA
Trigger: TGCCCAGGGGAGATGGGAGCAGAAATGATTGACATC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTCTTTTCCAGTTTCTTaGAAACCTGTCTCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLSFPVS*KPVSGS
Trigger: TGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGCCTCCCTTTCTTCAGTaGTATCTGTCGTGTCTGGTG +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQPPFLQ*YLSCLV
Trigger: CACCAGACACGACAGATAGCACTGAAGAAAGGGAGG...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TATCAGTTGGCTCACTGTGTTCCTTCTGAGGTTTTGAGGTTGCATGTGTGCTCTGTCTGGACAACATTTTaGCTTGTTTCTTGTGTGACC +
Preference number: 4 (lower is better)
Translates to: YQLAHCVPSEVLRLHVCSVWTTF*LVSCVT
Trigger: GGTCACACAAGAAACAAGGCAAAATGTTGTCCAGAC...AGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGGAGGACATGTCAACTaGAACTCCACTTTCAATGTG +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRGGHVN*NSTFNV
Trigger: CACATTGAAAGTGGAGTTGCAGTTGACATGTCCTCC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGGAGGACATGTCAACTaGAACTCCACTTTCAATGTG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRGGHVN*NSTFNV
Trigger: CACATTGAAAGTGGAGTTGCAGTTGACATGTCCTCC...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGTTTTCTACAGGATCTaGGTGGCCTTGACTTTCACT +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRVFYRI*VALTFT
Trigger: AGTGAAAGTCAAGGCCACGCAGATCCTGTAGAAAAC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGATCTGCCTTTTCCCTTaGTTGCAGAGAAAGCTGGGT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQICLFP*LQRKLG
Trigger: ACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCAGAT...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTGTTTACTAAGACTCTaGTCTTCAAGCCCCAAAGAT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKCLLRL*SSSPKD
Trigger: ATCTTTGGGGCTTGAAGAGCAGAGTCTTAGTAAACA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAGTTCTTTTCCAACTGTaGTCTATTTCACACTCAGAG +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGVLFQL*SISHSE
Trigger: CTCTGAGTGTGAAATAGAGCACAGTTGGAAAAGAAC...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTTCTTCAAATGATGCATaGGATGTACTAATGACAGGT +
Preference number: 4 (lower is better)
Translates to: EGWPEGTASQCPISGYFISSNDA*DVLMTG
Trigger: ACCTGTCATTAGTACATCGCATGCATCATTTGAAGA...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGACTCGCTTTCTTCTCTaGTCCCGGGAGCCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: IVIFERSGGLWLSFVENLTRFLL*SREPVP
Trigger: AGGAACAGGCTCCCGGGAGCAGAGAAGAAAGCGAGT...CAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp GAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGTTTTTCCATTGTAGCTGGAGTAGGGTTTaGCTGTGGTGCATCGTGATC +
Preference number: 4 (lower is better)
Translates to: ERSGGLWLSFVENLFFHCSWSRV*LWCIVI
Trigger: GATCACGATGCACCACAGCCAAACCCTACTCCAGCT...ACAATGGAAAAACAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCGATCTGGTGGCCTCTaGCTTTCATTTGTAGAAAAT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWRSGGL*LSFVEN
Trigger: ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAATCAGACACAGTTTTaGCACCTGGGCTCTCTCCGT +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQNQTQF*HLGSLR
Trigger: ACGGAGAGAGCCCAGGTGCCAAAACTGTGTCTGATT...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTTCTTCCCAAGTTGCTaGTATTTCTCCAGAAATAGG +
Preference number: 4 (lower is better)
Translates to: AGLKELQVSVPFLAISLAFFPSC*YFSRNR
Trigger: CCTATTTCTGGAGAAATACCAGCAACTTGGGAAGAA...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTGCTCCCATCTCCCCTaGGCAAGTATCTCTTCCAAT +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSCSHLP*ASISSN
Trigger: ATTGGAAGAGATACTTGCCCAGGGGAGATGGGAGCA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGGTGTGCTCTCTTTCATaGCCAAATCTTTTCCAGTTT +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLVCSLS*PNLFQF
Trigger: AAACTGGAAAAGATTTGGCCATGAAAGAGAGCACAC...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGAGTGCTCTGCTTCTATaGTTGCTCTCTTTAAAGCTG +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWSALLL*LLSLKL
Trigger: CAGCTTTAAAGAGAGCAACCATAGAAGCAGAGCACT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGACTGGGAGAGTTGTCTaGACAACATTTTGCCTTGTT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWTGRVV*TTFCLV
Trigger: AACAAGGCAAAATGTTGTCCAGACAACTCTCCCAGT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGGTCTTTTTGCAGTTCTaGTCCTTCATTCTTAGCTAT +
Preference number: 4 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQVFLQF*SFILSY
Trigger: ATAGCTAAGAATGAAGGACCAGAACTGCAAAAAGAC...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTCTTATCAGCAGTGCTaGACTAGGAACATACGGTTT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWSYQQC*TRNIRF
Trigger: AAACCGTATGTTCCTAGTCCAGCACTGCTGATAAGA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGTCTTATCAGCAGTGCTaGACTAGGAACATACGGTTT +
Preference number: 4 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLSYQQC*TRNIRF
Trigger: AAACCGTATGTTCCTAGTCCAGCACTGCTGATAAGA...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATCTTATCAGCAGTGCTaGACTAGGAACATACGGTTT +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKESYQQC*TRNIRF
Trigger: AAACCGTATGTTCCTAGTCCAGCACTGCTGATAAGA...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGGACTCGAAACAGTCTTaGGATAGCTTGATTCTTTCC +
Preference number: 4 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLDSKQS*DSLILS
Trigger: GGAAAGAATCAAGCTATCCCAAGACTGTTTCGAGTC...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGTTGATCCACGCCCTTTaGTCAGATTTGGTTTCGTCT +
Preference number: 4 (lower is better)
Translates to: WAHFYTLLLARADQKKPELIHAL*SDLVSS
Trigger: AGACGAAACCAAATCTGACCAAAGGGCGTGGATCAA...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGATCTGAGCAGAAACTaGTTCAGGGGATCTGAGACC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSDLSRN*FRGSET
Trigger: GGTCTCAGATCCCCTGAACCAGTTTCTGCTCAGATC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTGTGACTGGTGCATaGCTTTTATCTTCTAATTCT +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLAVTGA*LLSSNS
Trigger: AGAATTAGAAGATAAAAGCCATGCACCAGTCACAGC...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGTCCATCAGCAAATaGATTCACTGTAACAGCTTG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKELSISK*IHCNSL
Trigger: CAAGCTGTTACAGTGAATCCATTTGCTGATGGACAG...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp AAGTCTCTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAAAGACTGGATGTGCTTaGCACTCGCTTTCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: KSLIVIFERSGGLWLSFVKTGCA*HSLSSL
Trigger: CAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTT...TACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAGAGACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAATTGGACCATGGCTTTaGGTAGTAGTTCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRIGPWL*VVVLPE
Trigger: TTCAGGAAGAACTACTACTCAAAGCCATGGTCCAAT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGATTGGACCATGGCTTTaGGTAGTAGTTCTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRIGPWL*VVVLPE
Trigger: TTCAGGAAGAACTACTACTCAAAGCCATGGTCCAAT...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGTGATTCCTCTTCATTaGCTGTCTCAGCATCATTTT +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEVIPLH*LSQHHF
Trigger: AAAATGATGCTGAGACAGTCAATGAAGAGGAATCAC...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACCCAAATTTTTCCTGTaGGGTGAGAATTTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEPKFFL*GENFFP
Trigger: AGGAAAGAAATTCTCACCTCACAGGAAAAATTTGGG...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTCCTTCTGCAGCAGGTaGTCTTCTGCTGTTAGTGCT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSFCSR*SSAVSA
Trigger: AGCACTAACAGCAGAAGATCACCTGCTGCAGAAGGA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTTCCTTCTGAGGTTTTaGGGTTGCATGTGTGCTCTC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSFLLRF*GCMCAL
Trigger: GAGAGCACACATGCAACCTCAAAACCTCAGAAGGAA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGATCCGTCTGTATTCTTTaGTACAGATGTTTCAGATTC +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGSVCIL*YRCFRF
Trigger: GAATCTGAAACATCTGTAGCAAAGAATACAGACGGA...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGAAGCTGTATCATTTCTaGCACTGTCTTTCACATCTG +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWKLYHF*HCLSHL
Trigger: CAGATGTGAAAGACAGTGGCAGAAATGATACAGCTT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTTTCTCCCAAATTTGTaGAAATTTCCCCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKFLPNL*KFPQWY
Trigger: ATACCACTGGGGAAATTTGCACAAATTTGGGAGAAA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGGTTTTCTACAGGATCTaGGTGGCCTTGACTTTCACT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQVFYRI*VALTFT
Trigger: AGTGAAAGTCAAGGCCACGCAGATCCTGTAGAAAAC...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGCCTTTTCCCTTGCTTaGAGAGAAAGCTGGGTGTCA +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNAFSLA*RESWVS
Trigger: TGACACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGC...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp TATCAGTTGGCTCACTGTGTTCCTTCTGAGGTTTTGAGGTTGCATGTGTGCTCTGTTCTTTTCCAACTGTaGTCTATTTCACACTCAGAG +
Preference number: 4 (lower is better)
Translates to: YQLAHCVPSEVLRLHVCSVLFQL*SISHSE
Trigger: CTCTGAGTGTGAAATAGAGCACAGTTGGAAAAGAAC...AGAGCACACATGCAACCTCAAAACCTCAGAAGGAACACAGTGAGCCAACTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGGAATGATCTCTGACTaGAATACTATATCTCCCATT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKGMISD*NTISPI
Trigger: AATGGGAGATATAGTATTGCAGTCAGAGATCATTCC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAGGAATGATCTCTGACTaGAATACTATATCTCCCATT +
Preference number: 4 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGGMISD*NTISPI
Trigger: AATGGGAGATATAGTATTGCAGTCAGAGATCATTCC...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCTCTTCCTTAGTTTCTaGTGCTGTGACTGGTGCATG +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSLFLSF*CCDWCM
Trigger: CATGCACCAGTCACAGCAGCAGAAACTAAGGAAGAG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTATCCCATGCAAGACTCTaGTGTTTTCTCAAAAACATT +
Preference number: 4 (lower is better)
Translates to: RAGLKELQVSVPFLAISLSHARL*CFLKNI
Trigger: AATGTTTTTGAGAAAACAGCAGAGTCTTGCATGGGA...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGAAAGGGCGTTTTTCCTaGAATGCTTTGTCTATTCTC +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWKGRFS*NALSIL
Trigger: GAGAATAGACAAAGCATTCCAGGAAAAACGCCCTTT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGTCTCGGTCTCTTCACTaGGTGCTAAACCTGCAATGT +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQSRSLH*VLNLQC
Trigger: ACATTGCAGGTTTAGCACCCAGTGAAGAGACCGAGA...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTCCTGTATTTGGTTTTaGTTTCTGGAATCTAGTCCT +
Preference number: 4 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSCIWF*FLESSP
Trigger: AGGACTAGATTCCAGAAACCAAAACCAAATACAGGA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTCCTGTATTTGGTTTTaGTTTCTGGAATCTAGTCCT +
Preference number: 4 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLSCIWF*FLESSP
Trigger: AGGACTAGATTCCAGAAACCAAAACCAAATACAGGA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATATTCACTTTATCCTGTaGAGAGCCAGTGCTGCCGTC +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNIHFIL*RASAAV
Trigger: GACGGCAGCACTGGCTCTCCACAGGATAAAGTGAAT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGAGTGCTCTGCTTCTATaGTTGCTCTCTTTAAAGCTG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRSALLL*LLSLKL
Trigger: CAGCTTTAAAGAGAGCAACCATAGAAGCAGAGCACT...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATTGCACATTTGGTCTTaGTCTCTGAAGTCGACCCCT +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELHIWS*SLKSTP
Trigger: AGGGGTCGACTTCAGAGACCAAGACCAAATGTGCAA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGGCCTTTTGCACATTTaGTCTTGGTCTCTGAAGTCG +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSGLLHI*SWSLKS
Trigger: CGACTTCAGAGACCAAGACCAAATGTGCAAAAGGCC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAGACTCGAAACAGTCTTaGGATAGCTTGATTCTTTCC +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRDSKQS*DSLILS
Trigger: GGAAAGAATCAAGCTATCCCAAGACTGTTTCGAGTC...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGGCTGTGACTGGTGCATaGCTTTTATCTTCTAATTCT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWAVTGA*LLSSNS
Trigger: AGAATTAGAAGATAAAAGCCATGCACCAGTCACAGC...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTTCTGGAATATGAGATaGTACACTCTCTGGCCCATG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQFWNMR*YTLWPM
Trigger: CATGGGCCAGAGAGTGTACCATCTCATATTCCAGAA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCTTCTTGTTGGGCTTCTaGAATATGAGATGGTACACT +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGFLLGF*NMRWYT
Trigger: AGTGTACCATCTCATATTCCAGAAGCCCAACAAGAA...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCCTCAGGTGCTCCTTTaGGCCCATTTTTACACTCTT +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSPQVLL*AHFYTL
Trigger: AAGAGTGTAAAAATGGGCCCAAAGGAGCACCTGAGG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCGCTTTCTTCTCTGTaGAGAAGCAGAGGACAATGT +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNESLSSL*RSRGQC
Trigger: ACATTGTCCTCTGCTTCTTCACAGAGAAGAAAGCGA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATAAGACTGGATGTGCTTaGCACTCGCTTTCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNKTGCA*HSLSSL
Trigger: CAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGTTTTTCCATTGTGATTCGGTATCTGTCTaGACACGGCTGCTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: ERSGGLWLSFVENLFFHCDSVSV*TRLLLF
Trigger: AAAGAGAAGCAGCCGTGTTCAGACAGATACCGAATC...ACAATGGAAAAACAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACTTAAAACCTTTGCCTaGCTATCCTGCTGTACACAG +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELKTFA*LSCCTQ
Trigger: CTGTGTACAGCAGGATAGTCAGGCAAAGGTTTTAAG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAATTTTTCCTGTGAGGTaGGAATTTCTTTCCTTTCTG +
Preference number: 4 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEIFPVR*EFLSFL
Trigger: CAGAAAGGAAAGAAATTCTCACCTCACAGGAAAAAT...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAACACTCTTTTCTCACTaGAACCTCCAGAGGCATATC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNETLFSH*NLQRHI
Trigger: GATATGCCTCTGGAGGTTTCAGTGAGAAAAGAGTGT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCCAGGAATGATCTCTaGCTGCAATACTATATCTCC +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSRNDL*LQYYIS
Trigger: GGAGATATAGTATTGCAGTCAGAGATCATTCCTGGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGATGACTTTTATCCTCTaGATGAACATCAGGGAATAC +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWMTFIL*MNIREY
Trigger: GTATTCCCTGATGTTCATTCAGAGGATAAAAGTCAT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCCTGTTTTCTTCAAATaGTGCATGCGATGTACTAAT +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGPVFFK*CMRCTN
Trigger: ATTAGTACATCGCATGCATCATTTGAAGAAAACAGG...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTTGGCAGGAGGAACATaGATACTTTCATCAGGACTG +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSLAGGT*ILSSGL
Trigger: CAGTCCTGATGAAAGTATTCATGTTCCTCCTGCCAA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATTTTGGCTTTGGTCTTTaGATTCGACTCCTCATTAGT +
Preference number: 4 (lower is better)
Translates to: GLKELQVSVPFLAISLAYFGFGL*IRLLIS
Trigger: ACTAATGAGGAGTCGAATGCAAAGACCAAAGCCAAA...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGAAGCTGTATCATTTCTaGCACTGTCTTTCACATCTG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRKLYHF*HCLSHL
Trigger: CAGATGTGAAAGACAGTGGCAGAAATGATACAGCTT...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATATCTGCCTTTTCCCTTaGTTGCAGAGAAAGCTGGGT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNICLFP*LQRKLG
Trigger: ACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCAGAT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATTGTTTACTAAGACTCTaGTCTTCAAGCCCCAAAGAT +
Preference number: 4 (lower is better)
Translates to: GLKELQVSVPFLAISLAYCLLRL*SSSPKD
Trigger: ATCTTTGGGGCTTGAAGAGCAGAGTCTTAGTAAACA...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCAAACACTGGTGCTTTaGTTAATTCTTCTGGGGCAA +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQQTLVL*LILLGQ
Trigger: TTGCCCCAGAAGAATTAAGCAAAGCACCAGTGTTTG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGTGAATCCTTCTGTTaGATGGGTTGGGATTTCCAC +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQSESFC*MGWDFH
Trigger: GTGGAAATCCCAACCCATGCAACAGAAGGATTCACT...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTCCCATGCAAGACTCTaGTGTTTTCTCAAAAACATT +
Preference number: 4 (lower is better)
Translates to: AAATRTTWATQFKKNLLWSHARL*CFLKNI
Trigger: AATGTTTTTGAGAAAACAGCAGAGTCTTGCATGGGA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp CTCATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATAGTAGGGTTTGGCTGTaGTGCATCGTGATCAACTGT +
Preference number: 4 (lower is better)
Translates to: LIVIFERSGGLWLSFVENSRVWL*CIVINC
Trigger: ACAGTTGATCACGATGCACCACAGCCAAACCCTACT...ATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTATGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTACATTTGGCTTTaGTCTTTGCATTCGACTCCT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQHYIWL*SLHSTP
Trigger: AGGAGTCGAATGCAAAGACCAAAGCCAAATGTAGTG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAAATCCTTCTGTTGCATaGGTTGGGATTTCCACCAGA +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNENPSVA*VGISTR
Trigger: TCTGGTGGAAATCCCAACCCATGCAACAGAAGGATT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTCTCATAGTCATTTTTaGACGATCTGGTGGCCTCTG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSHSHF*TIWWPL
Trigger: CAGAGGCCACCAGATCGTTCAAAAATGACTATGAGA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGTCTCTTTTTCCATGTaGTTCTTCTCAGCTGCAGTT +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSVSFSM*FFSAAV
Trigger: AACTGCAGCTGAGAAGAATCACATGGAAAAAGAGAC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAATTTTTCCTGTGAGGTaGGAATTTCTTTCCTTTCTG +
Preference number: 4 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRIFPVR*EFLSFL
Trigger: CAGAAAGGAAAGAAATTCTCACCTCACAGGAAAAAT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGTTGCAAGTTTTTATGTaGCTCATTTTCCGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRLQVFM*LIFRLW
Trigger: CCACAAACGGAAAATGAGTCACATAAAAACTTGCAA...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCTTTCTTCCAGGCTCTaGCACAGTATCTTCACATTG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNLSSRL*HSIFTL
Trigger: CAATGTGAAGATACTGTGTCAGAGCCTGGAAGAAAG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGACCATGAGACTCACTaGTCTCTAAAGTCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNDHETH*SLKSSQ
Trigger: CTGAGAAGACTTTAGAGATCAGTGAGTCTCATGGTC...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATAAGCAGAGGACAATGTaGTGGACTCTGCAGCATTAT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNKQRTM*WTLQHY
Trigger: ATAATGCTGCAGAGTCCAGCACATTGTCCTCTGCTT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTTAATTTCTATCCTTaGTCTGTGAGGAAAAAGTTG +
Preference number: 4 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGLNFYP*SVRKKL
Trigger: CAACTTTTTCCTCACAGAGCAAGGATAGAAATTAAG...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGCGTTTTTCCTGGAATaGTTTGTCTATTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEAFFLE*FVYSPS
Trigger: GGATGGAGAATAGACAAAGCATTCCAGGAAAAACGC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATATTCTTGTGTATTTCTaGTGCAGGAGGGCTCGAATG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNILVYF*CRRARM
Trigger: CATTCGAGCCCTCCTGCAGCAGAAATACACAAGAAT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGTCTGGACAACATTTTaGCTTGTTTCTTGTGTGACC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSVWTTF*LVSCVT
Trigger: GGTCACACAAGAAACAAGGCAAAATGTTGTCCAGAC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGGTTCTTTTCCAACTGTaGTCTATTTCACACTCAGAG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQVLFQL*SISHSE
Trigger: CTCTGAGTGTGAAATAGAGCACAGTTGGAAAAGAAC...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACTCATTTTCCGTTTGTaGAGGAATCACAACACAGGA +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELIFRL*RNHNTG
Trigger: TCCTGTGTTGTGATTCCTCCACAAACGGAAAATGAG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGGACTCGAAACAGTCTTaGGATAGCTTGATTCTTTCC +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQDSKQS*DSLILS
Trigger: GGAAAGAATCAAGCTATCCCAAGACTGTTTCGAGTC...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTTCTTGTTGGGCTTCTaGAATATGAGATGGTACACT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQFLLGF*NMRWYT
Trigger: AGTGTACCATCTCATATTCCAGAAGCCCAACAAGAA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCTGTCCATCAGCAAATaGATTCACTGTAACAGCTTG +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSLSISK*IHCNSL
Trigger: CAAGCTGTTACAGTGAATCCATTTGCTGATGGACAG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACAAGTGAGGACTTTTTaGCAGGAGGAACATGAATAC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEQVRTF*QEEHEY
Trigger: GTATTCATGTTCCTCCTGCCAAAAAGTCCTCACTTG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGTGATTCCTCTTCATTaGCTGTCTCAGCATCATTTT +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSVIPLH*LSQHHF
Trigger: AAAATGATGCTGAGACAGTCAATGAAGAGGAATCAC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACTCCTCTTTTTCTCTTaGTTTTGGTCTTGCTCTAAC +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELLFFS*FWSCSN
Trigger: GTTAGAGCAAGACCAAAATCAAGAGAAAAAGAGGAG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACCCAAATTTTTCCTGTaGGGTGAGAATTTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEPKFFL*GENFFP
Trigger: AGGAAAGAAATTCTCACCTCACAGGAAAAATTTGGG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTTGCAAGTTTTTATGTaGCTCATTTTCCGTTTGTGG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQLQVFM*LIFRLW
Trigger: CCACAAACGGAAAATGAGTCACATAAAAACTTGCAA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR TCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTGTTGTGTCCATATGTaGAAGCTGATGTTCAACAAC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSCCVHM*KLMFNN
Trigger: GTTGTTGAACATCAGCTTTCACATATGGACACAACA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTAATAGAACCATCTTCTaGCACTTTTACTCGAGGAAC +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSNRTIF*HFYSRN
Trigger: GTTCCTCGAGTAAAAGTGGCAGAAGATGGTTCTATT...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATTTGGCTTTGGTCTTTaGATTCGACTCCTCATTAGT +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEFGFGL*IRLLIS
Trigger: ACTAATGAGGAGTCGAATGCAAAGACCAAAGCCAAA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAAAGGGCGTTTTTCCTaGAATGCTTTGTCTATTCTC +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQKGRFS*NALSIL
Trigger: GAGAATAGACAAAGCATTCCAGGAAAAACGCCCTTT...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATTCTTCCCAAGTTGCTaGTATTTCTCCAGAAATAGG +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEFFPSC*YFSRNR
Trigger: CCTATTTCTGGAGAAATACCAGCAACTTGGGAAGAA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGTGTGCTCTCTTTCATaGCCAAATCTTTTCCAGTTT +
Preference number: 4 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSVCSLS*PNLFQF
Trigger: AAACTGGAAAAGATTTGGCCATGAAAGAGAGCACAC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATACTGGGAGAGTTGTCTaGACAACATTTTGCCTTGTT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNTGRVV*TTFCLV
Trigger: AACAAGGCAAAATGTTGTCCAGACAACTCTCCCAGT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGGTCTTTTTGCAGTTCTaGTCCTTCATTCTTAGCTAT +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQVFLQF*SFILSY
Trigger: ATAGCTAAGAATGAAGGACCAGAACTGCAAAAAGAC...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACTCTCTGTTCAGAATTaGAAGCAGGTTCAGTTTTCT +
Preference number: 4 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELSVQN*KQVQFS
Trigger: AGAAAACTGAACCTGCTTCCAATTCTGAACAGAGAG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCTTAATTTCTATCCTTaGTCTGTGAGGAAAAAGTTG +
Preference number: 4 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQLNFYP*SVRKKL
Trigger: CAACTTTTTCCTCACAGAGCAAGGATAGAAATTAAG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGTTTCTCCCAAATTTGTaGAAATTTCCCCAGTGGTAT +
Preference number: 4 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQFLPNL*KFPQWY
Trigger: ATACCACTGGGGAAATTTGCACAAATTTGGGAGAAA...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTCTTTTCCAGTTTCTTaGAAACCTGTCTCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSFPVS*KPVSGS
Trigger: TGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTGTTTACTAAGACTCTaGTCTTCAAGCCCCAAAGAT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNCLLRL*SSSPKD
Trigger: ATCTTTGGGGCTTGAAGAGCAGAGTCTTAGTAAACA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATAGCTTTCACTACATTTaGCTTTGGTCTTTGCATTCG +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSFHYI*LWSLHS
Trigger: CGAATGCAAAGACCAAAGCCAAATGTAGTGAAAGCT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
3UTR CAA 72 bp AATCAGCACTCTAGACTCATTGAGTTCGACCCTTGTTaGCTTAGAAACTTGAAAAGTGGTCACCATTTTATC +
Preference number: 4 (lower is better)
Translates to: NQHSRLIEFDPC*LRNLKSGHHFI
Trigger: GATAAAATGGTGACCACTTTTCAAGTTTCTAAGCAAACAAGGGTCGAACTCAATGAGTCTAGAGTGCTGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR TCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCCTGTTTTCTTCAAATaGTGCATGCGATGTACTAAT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNPVFFK*CMRCTN
Trigger: ATTAGTACATCGCATGCATCATTTGAAGAAAACAGG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTCCGTCTGTATTCTTTaGTACAGATGTTTCAGATTC +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSVCIL*YRCFRF
Trigger: GAATCTGAAACATCTGTAGCAAAGAATACAGACGGA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR GCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTCTTCAAATGATGCATaGGATGTACTAATGACAGGT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSSNDA*DVLMTG
Trigger: ACCTGTCATTAGTACATCGCATGCATCATTTGAAGA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CCA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGTCTTTTTGCAGTTCTaGTCCTTCATTCTTAGCTAT +
Preference number: 4 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNVFLQF*SFILSY
Trigger: ATAGCTAAGAATGAAGGACCAGAACTGCAAAAAGAC...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS GCA 90 bp CTTCTGCAGTGCTCGACTCCACTGCCACCTCCTCTCTGCATGCGCTaGCCTGTGGCTCCTCCTCGCTGGCAGACTGCTCCACAGGAGCGC +
Preference number: 5 (lower is better)
Translates to: LLQCSTPLPPPLCMR*PVAPPRWQTAPQER
Trigger: GCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAG
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp TCCTCTCTGCATGCGCTGCCCTGTGGCTCCTCCTCGCTGGCAGACTaGTCCACAGGAGCGCCTGCTGCCTTTCCTCTCTGGGAAGTTCCT +
Preference number: 5 (lower is better)
Translates to: SSLHALPCGSSSLAD*STGAPAAFPLWEVP
Trigger: AGGAACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGCAGAGAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp GCTCCTTTCCTTCTGCAGTGCTCGACTCCACTGCCACCTCCTCTCTaGATGCGCTGCCCTGTGGCTCCTCCTCGCTGGCAGACTGCTCCA +
Preference number: 5 (lower is better)
Translates to: APFLLQCSTPLPPPL*MRCPVAPPRWQTAP
Trigger: TGGAGCAGTCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAGGAAAGGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp ACACTCGCTTTCTTCTCTGCTCCCGGGAGCCTGTTCCTGGGGTTCTaGTCCCCCGGAATCCACTGCAGGCACATCTGTGGGCTCCGCTGG +
Preference number: 5 (lower is better)
Translates to: TLAFFSAPGSLFLGF*SPGIHCRHICGLRW
Trigger: CCAGCGGAGCCCACAGATGTGCCTGCAGTGGATTCCGGGGGAGCAGAACCCCAGGAACAGGCTCCCGGGAGCAGAGAAGAAAGCGAGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS GCA 90 bp CTGTGGCTCCTCCTCGCTGGCAGACTGCTCCACAGGAGCGCCTGCTaGCTTTCCTCTCTGGGAAGTTCCTCCTCCAATCTCTTCCAGGGG +
Preference number: 5 (lower is better)
Translates to: LWLLLAGRLLHRSAC*LSSLGSSSSNLFQG
Trigger: CCCCTGGAAGAGATTGGAGGAGGAACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp GCCCTGTGGCTCCTCCTCGCTGGCAGACTGCTCCACAGGAGCGCCTaGTGCCTTTCCTCTCTGGGAAGTTCCTCCTCCAATCTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: ALWLLLAGRLLHRSA*CLSSLGSSSSNLFQ
Trigger: CTGGAAGAGATTGGAGGAGGAACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCACAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp TTCCCTCAGGTTCAGCTCCTTTCCTTCTGCAGTGCTCGACTCCACTaGCACCTCCTCTCTGCATGCGCTGCCCTGTGGCTCCTCCTCGCT +
Preference number: 5 (lower is better)
Translates to: FPQVQLLSFCSARLH*HLLSACAALWLLLA
Trigger: AGCGAGGAGGAGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAGGAAAGGAGCTGAACCTGAGGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp AGGGGCGACTCTGTGAGGGGGCACTGCCAGAAGGCTGAACAAGACTaGATGTGCTTGACACTCGCTTTCTTCTCTGCTCCCGGGAGCCTG +
Preference number: 5 (lower is better)
Translates to: RGDSVRGHCQKAEQD*MCLTLAFFSAPGSL
Trigger: CAGGCTCCCGGGAGCAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGAGTCGCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CAA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTGGTCCACGCTGGGGATaGGGAGCGGCGGAGCCCCTG +
Preference number: 5 (lower is better)
Translates to: AGLKELQVSVPFLAISLAGPRWG*GAAEPL
Trigger: CAGGGGCTCCGCCGCTCCCAATCCCCAGCGTGGACC...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS GCA 90 bp CATCTTCTCCAGTTTCCCTCAGGTTCAGCTCCTTTCCTTCTGCAGTaGTCGACTCCACTGCCACCTCCTCTCTGCATGCGCTGCCCTGTG +
Preference number: 5 (lower is better)
Translates to: HLLQFPSGSAPFLLQ*STPLPPPLCMRCPV
Trigger: CACAGGGCAGCGCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAGGAAAGGAGCTGAACCTGAGGGAAACTGGAGAAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp GACTCTGTGAGGGGGCACTGCCAGAAGGCTGAACAAGACTGGATGTaGTTGACACTCGCTTTCTTCTCTGCTCCCGGGAGCCTGTTCCTG +
Preference number: 5 (lower is better)
Translates to: DSVRGHCQKAEQDWM*LTLAFFSAPGSLFL
Trigger: CAGGAACAGGCTCCCGGGAGCAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS GCA 90 bp GAGCAGCTTGGTCACTGTCCTGCTGTAGCATGGCGGCCTCCACTTTaGAGGCTTCGGATTTCTTCCCAGGCACACAGTGCTCTGCTTCTA +
Preference number: 5 (lower is better)
Translates to: EQLGHCPAVAWRPPL*RLRISSQAHSALLL
Trigger: TAGAAGCAGAGCACTGTGTGCCTGGGAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGCCATGCTACAGCAGGACAGTGACCAAGCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 90 bp GGCTGCTTCTCTTTAGCTGGAGTAGGGTTTGGCTGTGGTGCATCGTaGTCAACTGTAGATAAGGGGCGACTCTGTGAGGGGGCACTGCCA +
Preference number: 5 (lower is better)
Translates to: GCFSLAGVGFGCGAS*STVDKGRLCEGALP
Trigger: TGGCAGTGCCCCCTCACAGAGTCGCCCCTTATCTACAGTTGATCACGATGCACCACAGCCAAACCCTACTCCAGCTAAAGAGAAGCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
ENSMUST00000163097.2
CDS TCA 90 bp GTCTTCAGGTCAGCACCTCTTCCTTCTGAGCAGGAGCTCTCAGCATaGGCCATGTCAGCAGAGGCAGTATTACCGGGTTCCCACACAGGT +
Preference number: 5 (lower is better)
Translates to: VFRSAPLPSEQELSA*AMSAEAVLPGSHTG
Trigger: ACCTGTGTGGGAACCCGGTAATACTGCCTCTGCTGACATGGCTCATGCTGAGAGCTCCTGCTCAGAAGGAAGAGGTGCTGACCTGAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp AGGGGCGACTCTGTGAGGGGGCACTGCCAGAAGGCTGAACAAGACTaGATGTGCTTGACACTCGCTTTCTTCTCTGTGAAGAAGCAGAGG +
Preference number: 5 (lower is better)
Translates to: RGDSVRGHCQKAEQD*MCLTLAFFSVKKQR
Trigger: CCTCTGCTTCTTCACAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGAGTCGCCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 90 bp TTCAGTCTCTGGTGCCGCAGTCTTCAGGTCAGCACCTCTTCCTTCTaGGCAGGAGCTCTCAGCATGAGCCATGTCAGCAGAGGCAGTATT +
Preference number: 5 (lower is better)
Translates to: FSLWCRSLQVSTSSF*AGALSMSHVSRGSI
Trigger: AATACTGCCTCTGCTGACATGGCTCATGCTGAGAGCTCCTGCTCAGAAGGAAGAGGTGCTGACCTGAAGACTGCGGCACCAGAGACTGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGGTCCACGCTGGGGATaGGGAGCGGCGGAGCCCCTG +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSGPRWG*GAAEPL
Trigger: CAGGGGCTCCGCCGCTCCCAATCCCCAGCGTGGACC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTGGGACCTGGCTCTTCTaGGGTCTGTTCACCTACGTC +
Preference number: 5 (lower is better)
Translates to: CFYGSEGWPEGTASQCPIGTWLF*GLFTYV
Trigger: GACGTAGGTGAACAGACCCAAGAAGAGCCAGGTCCC...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS GCA 90 bp CCAGTGCTGCCGTCACTACTGCTCAGAATTACATCTGCCTCAGGCTaGCCTGAGGAATGTTCCTCTGGTTCACGTTCTCTTGGAGCAACA +
Preference number: 5 (lower is better)
Translates to: PVLPSLLLRITSASG*PEECSSGSRSLGAT
Trigger: TGTTGCTCCAAGAGAACGTGAACCAGAGGAACATTCCTCAGGGCAGCCTGAGGCAGATGTAATTCTGAGCAGTAGTGACGGCAGCACTGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp GCGGCCTCCACTTTGCAGGCTTCGGATTTCTTCCCAGGCACACAGTaGTCTGCTTCTATGGTTGCTCTCTTTAAAGCTGCTCTTGACAGG +
Preference number: 5 (lower is better)
Translates to: AASTLQASDFFPGTQ*SASMVALFKAALDR
Trigger: CCTGTCAAGAGCAGCTTTAAAGAGAGCAACCATAGAAGCAGAGCACTGTGTGCCTGGGAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp GACTCTGTGAGGGGGCACTGCCAGAAGGCTGAACAAGACTGGATGTaGTTGACACTCGCTTTCTTCTCTGTGAAGAAGCAGAGGACAATG +
Preference number: 5 (lower is better)
Translates to: DSVRGHCQKAEQDWM*LTLAFFSVKKQRTM
Trigger: CATTGTCCTCTGCTTCTTCACAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGAGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ATAGTCATTTTTGAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGGGTCCACGCTGGGGATaGGGAGCGGCGGAGCCCCTG +
Preference number: 5 (lower is better)
Translates to: IVIFERSGGLWLSFVENLGPRWG*GAAEPL
Trigger: CAGGGGCTCCGCCGCTCCCAATCCCCAGCGTGGACC...CAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTCAAAAATGACTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGATGGCGGCCTCCACTTaGCAGGCTTCGGATTTCTTC +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQMAAST*QASDFF
Trigger: GAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGCCAT...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGGGACCTGGCTCTTCTaGGGTCTGTTCACCTACGTC +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKGTWLF*GLFTYV
Trigger: GACGTAGGTGAACAGACCCAAGAAGAGCCAGGTCCC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS TCA 90 bp GCTGCCGTCACTACTGCTCAGAATTACATCTGCCTCAGGCTGCCCTaGGGAATGTTCCTCTGGTTCACGTTCTCTTGGAGCAACATCTAT +
Preference number: 5 (lower is better)
Translates to: AAVTTAQNYICLRLP*GMFLWFTFSWSNIY
Trigger: ATAGATGTTGCTCCAAGAGAACGTGAACCAGAGGAACATTCCTCAGGGCAGCCTGAGGCAGATGTAATTCTGAGCAGTAGTGACGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGCCCTCACTGGGAGAGTaGTCTGGACAACATTTTGCC +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQPSLGE*SGQHFA
Trigger: GGCAAAATGTTGTCCAGACAACTCTCCCAGTGAGGG...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGGTCACCAACACGGACTaGGAAGCTCTAGGTTCCTTC +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQVTNTD*EALGSF
Trigger: GAAGGAACCTAGAGCTTCCAAGTCCGTGTTGGTGAC...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS TCA 90 bp CAACATCTCCCTCAGTTTTCGGGCCTTATAGATTCGGTATCTGTCTaGACACGGCTGCTTCTCTTTAGCTGGAGTAGGGTTTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: QHLPQFSGLIDSVSV*TRLLLFSWSRVWLW
Trigger: CCACAGCCAAACCCTACTCCAGCTAAAGAGAAGCAGCCGTGTTCAGACAGATACCGAATCTATAAGGCCCGAAAACTGAGGGAGATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 90 bp GTAAAGCCACAGCACACGACTCTGAGGACTCCCTTGCTAGTGGCATaGTGTCTTGTTGATTACATGTGGAAGGGATGGGGTCCATTCTCA +
Preference number: 5 (lower is better)
Translates to: VKPQHTTLRTPLLVA*CLVDYMWKGWGPFS
Trigger: TGAGAATGGACCCCATCCCTTCCACATGTAATCAACAAGACATCATGCCACTAGCAAGGGAGTCCTCAGAGTCGTGTGCTGTGGCTTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp GTGTCTGGTGTGCTCTCTTTCATGGCCAAATCTTTTCCAGTTTCTTaGAAACCTGTCTCTGGTTCACTAACTGGACCGACCTCCTTCGGG +
Preference number: 5 (lower is better)
Translates to: VSGVLSFMAKSFPVS*KPVSGSLTGPTSFG
Trigger: CCCGAAGGAGGTCGGTCCAGTTAGTGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGATTTGGCCATGAAAGAGAGCACACCAGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGATGGCGGCCTCCACTTaGCAGGCTTCGGATTTCTTC +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWMAAST*QASDFF
Trigger: GAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGCCAT...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS CCA 90 bp TTAGTATCTGAAAACCGCTCTAGAGCATCTGGAAGCGGCATCCCTTaGTCTGTTTCATGGCGTCCCAAATTCTGTGAGCAAGACTCCACA +
Preference number: 5 (lower is better)
Translates to: LVSENRSRASGSGIP*SVSWRPKFCEQDST
Trigger: TGTGGAGTCTTGCTCACAGAATTTGGGACGCCATGAAACAGACCAAGGGATGCCGCTTCCAGATGCTCTAGAGCGGTTTTCAGATACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp TGCTCATCCTTACGGCGTGCTCCTCCTAAATTTGGTTTAGCCTTTTaGAACCGCCTTCTTATCAGCAGTGCTGGACTAGGAACATACGGT +
Preference number: 5 (lower is better)
Translates to: CSSLRRAPPKFGLAF*NRLLISSAGLGTYG
Trigger: ACCGTATGTTCCTAGTCCAGCACTGCTGATAAGAAGGCGGTTCCAAAAGGCTAAACCAAATTTAGGAGGAGCACGCCGTAAGGATGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGCGACGCAGGGGCCTTTaGTTCTCAAAACTTCTACAG +
Preference number: 5 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLRRRGL*FSKLLQ
Trigger: CTGTAGAAGTTTTGAGAACAAAAGGCCCCTGCGTCG...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTGGGAGCTGGTTTAACTaGAAGTGGCTGCTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: AGLKELQVSVPFLAISLAGSWFN*KWLLFL
Trigger: CAAGAACAGCAGCCACTTCAAGTTAAACCAGCTCCC...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCCCTCACTGGGAGAGTaGTCTGGACAACATTTTGCC +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWPSLGE*SGQHFA
Trigger: GGCAAAATGTTGTCCAGACAACTCTCCCAGTGAGGG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTGCCTTTTCCCTTGCTaGCAGAGAAAGCTGGGTGTC +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWCLFPC*QRKLGV
Trigger: GACACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp CATCTTGAACAACCAAAGAGGTTTGTAAACTCCCACTCAGGTCACCTCGTTCTGTGCCTTTTCCCTTGCTaGCAGAGAAAGCTGGGTGTC +
Preference number: 5 (lower is better)
Translates to: HLEQPKRFVNSHSGHLVLCLFPC*QRKLGV
Trigger: GACACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCA...CAGAACGAGGTGACCTGAGTGGGAGTTTACAAACCTCTTTGGTTGTTCAAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGTATCTGCCTTTTCCCTaGCTTGCAGAGAAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELYLPFP*LAEKAG
Trigger: CCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCAGATA...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGCACAGCCTGAGCTGTaGTGTCCATATGTGAAAGCT +
Preference number: 5 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQAQPEL*CPYVKA
Trigger: AGCTTTCACATATGGACACAACAGCTCAGGCTGTGC...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCTTCTCGCAGGTAGGATaGCTTCTTGAGAAACACTGG +
Preference number: 5 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVFSQVG*LLEKHW
Trigger: CCAGTGTTTCTCAAGAAGCAATCCTACCTGCGAGAA...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTCTGAGGTTTTGAGGTaGCATGTGTGCTCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLSEVLR*HVCSLR
Trigger: CCTCAGAGAGCACACATGCAACCTCAAAACCTCAGA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGATGGTCAGAGGGGGTTTaGAAGAGGATGTCACGATGT +
Preference number: 5 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGWSEGV*KRMSRC
Trigger: ACATCGTGACATCCTCTTCAAAACCCCCTCTGACCA...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS CCA 90 bp TACATGTGGAAGGGATGGGGTCCATTCTCATCTCGGTCTCTTCACTaGGTGCTAAACCTGCAATGTCATCTATGTTCTGTGTCAAGGATG +
Preference number: 5 (lower is better)
Translates to: YMWKGWGPFSSRSLH*VLNLQCHLCSVSRM
Trigger: CATCCTTGACACAGAACATAGATGACATTGCAGGTTTAGCACCCAGTGAAGAGACCGAGATGAGAATGGACCCCATCCCTTCCACATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp CTCCCTCAGAGAAGTGTCCAGACTCGGAATTTCTTCCCAAGTTGCTaGTATTTCTCCAGAAATAGGTGTCTCCTCTGGTATCCCTTCCTT +
Preference number: 5 (lower is better)
Translates to: LPQRSVQTRNFFPSC*YFSRNRCLLWYPFL
Trigger: AAGGAAGGGATACCAGAGGAGACACCTATTTCTGGAGAAATACCAGCAACTTGGGAAGAAATTCCGAGTCTGGACACTTCTCTGAGGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp TGCAGGCTTCGGATTTCTTCCCAGGCACACAGTGCTCTGCTTCTATaGTTGCTCTCTTTAAAGCTGCTCTTGACAGGTTTGGTTTTGGTT +
Preference number: 5 (lower is better)
Translates to: CRLRISSQAHSALLL*LLSLKLLLTGLVLV
Trigger: AACCAAAACCAAACCTGTCAAGAGCAGCTTTAAAGAGAGCAACCATAGAAGCAGAGCACTGTGTGCCTGGGAAGAAATCCGAAGCCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAACAAGACTGGATGTGCTaGACACTCGCTTTCTTCTCT +
Preference number: 5 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQQDWMC*TLAFFS
Trigger: AGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTG...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGCAGTTTCTCCCAAATTaGTGCAAATTTCCCCAGTGG +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQQFLPN*CKFPQW
Trigger: CCACTGGGGAAATTTGCACAAATTTGGGAGAAACTG...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TGCAGTACCCGACTCTTGAACCTCTTGCAAGGTCTCCTCATGATCTTCAATTCTTTTGCACATTTGGTCTaGGTCTCTGAAGTCGACCCC +
Preference number: 5 (lower is better)
Translates to: CSTRLLNLLQGLLMIFNSFAHLV*VSEVDP
Trigger: GGGGTCGACTTCAGAGACCAAGACCAAATGTGCAAA...AGAATTGAAGATCATGAGGAGACCTTGCAAGAGGTTCAAGAGTCGGGTACTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATTTGCACATTTGGTCTaGGTCTCTGAAGTCGACCCC +
Preference number: 5 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEFAHLV*VSEVDP
Trigger: GGGGTCGACTTCAGAGACCAAGACCAAATGTGCAAA...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGACAATGTGAGAAGAGTTaGCCACAGTCAGGCATGTTC +
Preference number: 5 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGQCEKS*PQSGMF
Trigger: GAACATGCCTGACTGTGGCAAACTCTTCTCACATTG...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAAGGATCTGCGTGGCCTaGACTTTCACTCACTTGGCA +
Preference number: 5 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRRICVA*TFTHLA
Trigger: TGCCAAGTGAGTGAAAGTCAAGGCCACGCAGATCCT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTCAGTCTTGGGATAGCTaGATTCTTTCCATAGTTGTG +
Preference number: 5 (lower is better)
Translates to: CFYGSEGWPEGTASQCPIQSWDS*ILSIVV
Trigger: CACAACTATGGAAAGAATCAAGCTATCCCAAGACTG...AATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTTTGATCCACGCCCTTaGGTCAGATTTGGTTTCGTC +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKFDPRP*VRFGFV
Trigger: GACGAAACCAAATCTGACCAAAGGGCGTGGATCAAA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAATTTGATCCACGCCCTTaGGTCAGATTTGGTTTCGTC +
Preference number: 5 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQFDPRP*VRFGFV
Trigger: GACGAAACCAAATCTGACCAAAGGGCGTGGATCAAA...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTCTCAAGCTCTTCCATaGTTTCCTCGATCTGAGCAG +
Preference number: 5 (lower is better)
Translates to: AGLKELQVSVPFLAISLASQALP*FPRSEQ
Trigger: CTGCTCAGATCGAGGAAACAATGGAAGAGCTTGAGA...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGACCTTTAGGGGTTTCTTaGAGGGCTTCTTTAGCAGCA +
Preference number: 5 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGPLGVS*RASLAA
Trigger: TGCTGCTAAAGAAGCCCTCAAAGAAACCCCTAAAGG...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTTCCTTCTGAGGTTTaGAGGTTGCATGTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQVPSEV*RLHVCS
Trigger: AGAGCACACATGCAACCTCAAAACCTCAGAAGGAAC...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGTGGTCAGAGGGGGTTTaGAAGAGGATGTCACGATGT +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWWSEGV*KRMSRC
Trigger: ACATCGTGACATCCTCTTCAAAACCCCCTCTGACCA...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS TCA 90 bp GGAAGCTCTAGGTTCCTTCTTAGCAGTCTTACCTCGAATTCGTTTTaGTCCACGCCCTTTGGTCAGATTTGGTTTCGTCTTCCTCTGTGT +
Preference number: 5 (lower is better)
Translates to: GSSRFLLSSLTSNSF*STPFGQIWFRLPLC
Trigger: ACACAGAGGAAGACGAAACCAAATCTGACCAAAGGGCGTGGATCAAAACGAATTCGAGGTAAGACTGCTAAGAAGGAACCTAGAGCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp CCCTTTCTTCAGTGCTATCTGTCGTGTCTGGTGTGCTCTCTTTCATaGCCAAATCTTTTCCAGTTTCTTGCAAACCTGTCTCTGGTTCAC +
Preference number: 5 (lower is better)
Translates to: PFLQCYLSCLVCSLS*PNLFQFLANLSLVH
Trigger: GTGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGATTTGGCCATGAAAGAGAGCACACCAGACACGACAGATAGCACTGAAGAAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp GGTTATCTCAAGCTCTTCCATTGTTTCCTCGATCTGAGCAGAAACTaGTTCAGGGGATCTGAGACCAACAGGTACAAACACTGGTGCTTT +
Preference number: 5 (lower is better)
Translates to: GYLKLFHCFLDLSRN*FRGSETNRYKHWCF
Trigger: AAAGCACCAGTGTTTGTACCTGTTGGTCTCAGATCCCCTGAACCAGTTTCTGCTCAGATCGAGGAAACAATGGAAGAGCTTGAGATAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GAGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTCCACTGAAGAAGTCATaGGATTGTTATCTGGAAGGT +
Preference number: 5 (lower is better)
Translates to: EGWPEGTASQCPISGYFIPLKKS*DCYLEG
Trigger: ACCTTCCAGATAACAATCCAATGACTTCTTCAGTGG...AATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAATCACTACATTTGGCTTaGGTCTTTGCATTCGACTCC +
Preference number: 5 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQSLHLA*VFAFDS
Trigger: GGAGTCGAATGCAAAGACCAAAGCCAAATGTAGTGA...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGCAGCTTTCACTACATTaGGCTTTGGTCTTTGCATTC +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQQLSLH*ALVFAF
Trigger: GAATGCAAAGACCAAAGCCAAATGTAGTGAAAGCTG...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCTCTGGTATCCCTTCCTaGGAGGATATTCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: VLHFVSMGQRAGLKELQVSGIPS*EDILLL
Trigger: AAGAAGAAGAATATCCTCCAAGGAAGGGATACCAGA...GACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCCTTTAGGGGTTTCTTaGAGGGCTTCTTTAGCAGCA +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWPLGVS*RASLAA
Trigger: TGCTGCTAAAGAAGCCCTCAAAGAAACCCCTAAAGG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTACCGGTGTTTTCTTGTaGGGCTTCTGGAATATGAGA +
Preference number: 5 (lower is better)
Translates to: AGLKELQVSVPFLAISLATGVFL*GFWNMR
Trigger: TCTCATATTCCAGAAGCCCAACAAGAAAACACCGGT...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS TCA 90 bp GTCCCAATAGGAACAAGTAAGCCATTTTCCTGGTTTGGGGTTAACTaGGAACCCTCTTTAGGTTCACTTGAATTTGGCGGTGAAGCATCC +
Preference number: 5 (lower is better)
Translates to: VPIGTSKPFSWFGVN*EPSLGSLEFGGEAS
Trigger: GGATGCTTCACCGCCAAATTCAAGTGAACCTAAAGAGGGTTCTCAGTTAACCCCAAACCAGGAAAATGGCTTACTTGTTCCTATTGGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 90 bp TCTGTCAGAACCCGACTCTTCAGAATGTATACACTCTTTTCTCACTaGAACCTCCAGAGGCATATCTGCCTTTTCCCTTGCTTGCAGAGA +
Preference number: 5 (lower is better)
Translates to: SVRTRLFRMYTLFSH*NLQRHICLFPCLQR
Trigger: TCTCTGCAAGCAAGGGAAAAGGCAGATATGCCTCTGGAGGTTTCAGTGAGAAAAGAGTGTATACATTCTGAAGAGTCGGGTTCTGACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS TCA 90 bp CTTCCATTGTTTCCTCGATCTGAGCAGAAACTGGTTCAGGGGATCTaGGACCAACAGGTACAAACACTGGTGCTTTGCTTAATTCTTCTG +
Preference number: 5 (lower is better)
Translates to: LPLFPRSEQKLVQGI*DQQVQTLVLCLILL
Trigger: CAGAAGAATTAAGCAAAGCACCAGTGTTTGTACCTGTTGGTCTCAGATCCCCTGAACCAGTTTCTGCTCAGATCGAGGAAACAATGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 90 bp TTGGTCAGATTTGGTTTCGTCTTCCTCTGTGTTCTTTTCCAACTGTaGTCTATTTCACACTCAGAGGCAGAAGAGAGAGGGGTTCTTCGA +
Preference number: 5 (lower is better)
Translates to: LVRFGFVFLCVLFQL*SISHSEAEERGVLR
Trigger: TCGAAGAACCCCTCTCTCTTCTGCCTCTGAGTGTGAAATAGAGCACAGTTGGAAAAGAACACAGAGGAAGACGAAACCAAATCTGACCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGAGTGCTCTGATTTTCTaGCCTATCTCTCGTTGGGGT +
Preference number: 5 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRSALIF*PISRWG
Trigger: ACCCCAACGAGAGATAGGCAAGAAAATCAGAGCACT...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGGAAGGACATGTATTCTaGTGTATTTCTGCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKEGHVF*CISAAG
Trigger: TCCTGCAGCAGAAATACACAAGAATACATGTCCTTC...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTGGCATGATGTCTTGTaGATTACATGTGGAAGGGAT +
Preference number: 5 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLWHDVL*ITCGRD
Trigger: ATCCCTTCCACATGTAATCAACAAGACATCATGCCA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGCTCCGTCTGTATTCTTaGCTACAGATGTTTCAGATT +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQLRLYS*LQMFQI
Trigger: AATCTGAAACATCTGTAGCAAAGAATACAGACGGAG...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGATCTTTTCCAGTTTCTaGCAAACCTGTCTCTGGTTC +
Preference number: 5 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLIFSSF*QTCLWF
Trigger: GAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGAT...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACCCTCACTGGGAGAGTaGTCTGGACAACATTTTGCC +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEPSLGE*SGQHFA
Trigger: GGCAAAATGTTGTCCAGACAACTCTCCCAGTGAGGG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGATCTGCGTGGCCTaGACTTTCACTCACTTGGCA +
Preference number: 5 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQRICVA*TFTHLA
Trigger: TGCCAAGTGAGTGAAAGTCAAGGCCACGCAGATCCT...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGTGCCTTTTCCCTTGCTaGCAGAGAAAGCTGGGTGTC +
Preference number: 5 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQCLFPC*QRKLGV
Trigger: GACACCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCA...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTATCTGCCTTTTCCCTaGCTTGCAGAGAAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQYLPFP*LAEKAG
Trigger: CCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCAGATA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp AGAAGGGGCCCCAGGAGAGAGCTTTATAGTGTCTCATCCACTTCAATGAAGATGCAGTCTTGGGATAGCTaGATTCTTTCCATAGTTGTG +
Preference number: 5 (lower is better)
Translates to: RRGPRRELYSVSSTSMKMQSWDS*ILSIVV
Trigger: CACAACTATGGAAAGAATCAAGCTATCCCAAGACTG...CATCTTCATTGAAGTGGATGAGACACTATAAAGCTCTCTCCTGGGGCCCCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGTCACCAACACGGACTaGGAAGCTCTAGGTTCCTTC +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSVTNTD*EALGSF
Trigger: GAAGGAACCTAGAGCTTCCAAGTCCGTGTTGGTGAC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGCACAGCTTTCTCTGCTaGCACAGCCTGAGCTGTTGT +
Preference number: 5 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQHSFLC*HSLSCC
Trigger: ACAACAGCTCAGGCTGTGCAAGCAGAGAAAGCTGTG...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGAAGGACCGGTGTTTTCTaGTTGGGCTTCTGGAATATG +
Preference number: 5 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRRTGVF*LGFWNM
Trigger: CATATTCCAGAAGCCCAACAAGAAAACACCGGTCCT...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATAGGACCGGTGTTTTCTaGTTGGGCTTCTGGAATATG +
Preference number: 5 (lower is better)
Translates to: GLKELQVSVPFLAISLAYRTGVF*LGFWNM
Trigger: CATATTCCAGAAGCCCAACAAGAAAACACCGGTCCT...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAGTCAGCTCAGAGGTACATTCTaGATAATCAATTCCTGGAAC +
Preference number: 5 (lower is better)
Translates to: ASFCFYGSEGWPEGTASQLRGTF*IINSWN
Trigger: GTTCCAGGAATTGATTATCAAGAATGTACCTCTGAG...CTGACTTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS CCA 90 bp TTGACACTCGCTTTCTTCTCTGTGAAGAAGCAGAGGACAATGTGCTaGACTCTGCAGCATTATTTTTGTCACCAGTCTTTTCATCACTGC +
Preference number: 5 (lower is better)
Translates to: LTLAFFSVKKQRTMC*TLQHYFCHQSFHHC
Trigger: GCAGTGATGAAAAGACTGGTGACAAAAATAATGCTGCAGAGTCCAGCACATTGTCCTCTGCTTCTTCACAGAGAAGAAAGCGAGTGTCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp AATAATAGAACCATCTTCTGCCACTTTTACTCGAGGAACCAGAAGTaGCCCATCATCCACCTCCTCTTCCACGTCTTCATTATCATTAGC +
Preference number: 5 (lower is better)
Translates to: NNRTIFCHFYSRNQK*PIIHLLFHVFIIIS
Trigger: GCTAATGATAATGAAGACGTGGAAGAGGAGGTGGATGATGGGCCACTTCTGGTTCCTCGAGTAAAAGTGGCAGAAGATGGTTCTATTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp CTGTACACAGGATTTCTCACTCAAATCAGACACAGTTTTGGCACCTaGGCTCTCTCCGTCTGTATTCTTTGCTACAGATGTTTCAGATTC +
Preference number: 5 (lower is better)
Translates to: LYTGFLTQIRHSFGT*ALSVCILCYRCFRF
Trigger: GAATCTGAAACATCTGTAGCAAAGAATACAGACGGAGAGAGCCCAGGTGCCAAAACTGTGTCTGATTTGAGTGAGAAATCCTGTGTACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGCCACTGAAGAAGTCATaGGATTGTTATCTGGAAGGT +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWPLKKS*DCYLEG
Trigger: ACCTTCCAGATAACAATCCAATGACTTCTTCAGTGG...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACGACGCAGGGGCCTTTaGTTCTCAAAACTTCTACAG +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNERRRGL*FSKLLQ
Trigger: CTGTAGAAGTTTTGAGAACAAAAGGCCCCTGCGTCG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGGTGATTCCTCTTCATaGACTGTCTCAGCATCATTT +
Preference number: 5 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEGDSSS*TVSASF
Trigger: AAATGATGCTGAGACAGTCAATGAAGAGGAATCACC...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGTTTATTAGCTTCACCTaGGTTCCTCCTCCTCTTTTT +
Preference number: 5 (lower is better)
Translates to: GNTTVVLHFVSMGQRAGLFISFT*VPPPLF
Trigger: AAAAAGAGGAGGAGGAACCAAGGTGAAGCTAATAAA...CAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTGGCTGGATATGTCCTaGTCAGTAGTTTCTTTTTCT +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKWLDMS*SVVSFS
Trigger: AGAAAAAGAAACTACTGACAAGGACATATCCAGCCA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGTGGCTGGATATGTCCTaGTCAGTAGTTTCTTTTTCT +
Preference number: 5 (lower is better)
Translates to: TVVLHFVSMGQRAGLKELWLDMS*SVVSFS
Trigger: AGAAAAAGAAACTACTGACAAGGACATATCCAGCCA...CAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGGGAGCTGGTTTAACTaGAAGTGGCTGCTGTTCTTG +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEGSWFN*KWLLFL
Trigger: CAAGAACAGCAGCCACTTCAAGTTAAACCAGCTCCC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTTTGCACATTTGGTCTaGGTCTCTGAAGTCGACCCC +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSFAHLV*VSEVDP
Trigger: GGGGTCGACTTCAGAGACCAAGACCAAATGTGCAAA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp ATCAGATACTATCTCACTCTGAGGCAATTGAGCCATGTTTTCTACACACGCATCCAATGTGAGAAGAGTTaGCCACAGTCAGGCATGTTC +
Preference number: 5 (lower is better)
Translates to: IRYYLTLRQLSHVFYTRIQCEKS*PQSGMF
Trigger: GAACATGCCTGACTGTGGCAAACTCTTCTCACATTG...GATGCGTGTGTAGAAAACATGGCTCAATTGCCTCAGAGTGAGATAGTATCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATAGGATCTGCGTGGCCTaGACTTTCACTCACTTGGCA +
Preference number: 5 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNRICVA*TFTHLA
Trigger: TGCCAAGTGAGTGAAAGTCAAGGCCACGCAGATCCT...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATATCTGCCTTTTCCCTaGCTTGCAGAGAAAGCTGGG +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEYLPFP*LAEKAG
Trigger: CCCAGCTTTCTCTGCAAGCAAGGGAAAAGGCAGATA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTTTGATCCACGCCCTTaGGTCAGATTTGGTTTCGTC +
Preference number: 5 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQFDPRP*VRFGFV
Trigger: GACGAAACCAAATCTGACCAAAGGGCGTGGATCAAA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCTCAAGCTCTTCCATaGTTTCCTCGATCTGAGCAG +
Preference number: 5 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSQALP*FPRSEQ
Trigger: CTGCTCAGATCGAGGAAACAATGGAAGAGCTTGAGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGATCCTTCAGTTTCTCTTaGAATTTCCACTTCTGTCTC +
Preference number: 5 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGSFSFS*NFHFCL
Trigger: GAGACAGAAGTGGAAATTCAAAGAGAAACTGAAGGA...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGATTCATCTTCTCCATCTaGCTGTCCATCAGCAAATGG +
Preference number: 5 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRFIFSI*LSISKW
Trigger: CCATTTGCTGATGGACAGCAAGATGGAGAAGATGAA...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATTTCATCTTCTCCATCTaGCTGTCCATCAGCAAATGG +
Preference number: 5 (lower is better)
Translates to: GLKELQVSVPFLAISLAYFIFSI*LSISKW
Trigger: CCATTTGCTGATGGACAGCAAGATGGAGAAGATGAA...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCTTCTGTTGCATGGGTaGGGATTTCCACCAGAGTTA +
Preference number: 5 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQLLLHG*GFPPEL
Trigger: TAACTCTGGTGGAAATCCCAACCCATGCAACAGAAG...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATATGATCCTGTATCAGTaGGCTCACTGTGTTCCTTCT +
Preference number: 5 (lower is better)
Translates to: GLKELQVSVPFLAISLAYMILYQ*AHCVPS
Trigger: AGAAGGAACACAGTGAGCCAACTGATACAGGATCAT...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATCTCTCTGTTCAGAATaGGAAGCAGGTTCAGTTTTC +
Preference number: 5 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKESLCSE*EAGSVF
Trigger: GAAAACTGAACCTGCTTCCAATTCTGAACAGAGAGA...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGCTTCTTACTATGGGTTaGAGTCACTTCATCAGATTC +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKLLTMG*SHFIRF
Trigger: GAATCTGATGAAGTGACTCAAACCCATAGTAAGAAG...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTCTTCTTACTATGGGTTaGAGTCACTTCATCAGATTC +
Preference number: 5 (lower is better)
Translates to: AGLKELQVSVPFLAISLALLTMG*SHFIRF
Trigger: GAATCTGATGAAGTGACTCAAACCCATAGTAAGAAG...AGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTCTGCAGCATTATTTTaGTCACCAGTCTTTTCATCA +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKSAALF*SPVFSS
Trigger: TGATGAAAAGACTGGTGACAAAAATAATGCTGCAGA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAAGTGCTCTGATTTTCTaGCCTATCTCTCGTTGGGGT +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNESALIF*PISRWG
Trigger: ACCCCAACGAGAGATAGGCAAGAAAATCAGAGCACT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGTTTTCCTGGAATGCTTaGTCTATTCTCCATCCATTT +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKFSWNA*SILHPF
Trigger: AAATGGATGGAGAATAGACAAAGCATTCCAGGAAAA...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGCTTATGAAGGACATGTATTCTaGTGTATTTCTGCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: GLKELQVSVPFLAISLAYEGHVF*CISAAG
Trigger: TCCTGCAGCAGAAATACACAAGAATACATGTCCTTC...ATAAGCTAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAGGGACTTGTTTCCGTTaGTTTTCTTTATTACCTTCA +
Preference number: 5 (lower is better)
Translates to: HYSSASFCFYGSEGWPEGGTCFR*FSLLPS
Trigger: TGAAGGTAATAAAGAAAACAAACGGAAACAAGTCCC...TCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp GCAGCTGCTACCAGGACCACTTGGGCTACACAGTTCAAAAAGAATCTTTTATGGGAATTTCTTCCCAAGTaGCTGGTATTTCTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: AAATRTTWATQFKKNLLWEFLPK*LVFLQK
Trigger: TTTCTGGAGAAATACCAGCAACTTGGGAAGAAATTC...CCATAAAAGATTCTTTTTGAACTGTGTAGCCCAAGTGGTCCTGGTAGCAGCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAAGAATTTCTTCCCAAGTaGCTGGTATTTCTCCAGAAA +
Preference number: 5 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEEFLPK*LVFLQK
Trigger: TTTCTGGAGAAATACCAGCAACTTGGGAAGAAATTC...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCAAGTATCTCTTCCAATaGTTTCCAAACCTGTCTCCA +
Preference number: 5 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGKYLFQ*FPNLSP
Trigger: TGGAGACAGGTTTGGAAACAATTGGAAGAGATACTT...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTGGAAGGTACATTATGTaGAGGAGAGAGAGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSGRYIM*RRESSL
Trigger: CAAGCTGCTCTCTCTCCTCAACATAATGTACCTTCC...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGGGAAGGTACATTATGTaGAGGAGAGAGAGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQGRYIM*RRESSL
Trigger: CAAGCTGCTCTCTCTCCTCAACATAATGTACCTTCC...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp CACAGTTCTCAAGTCCAGGTGCGCTCAGCACAGAGGACATCAAATGTAAACAAGATTTTGCCTTGTTTCTaGTGTGACCGTATTCATCAT +
Preference number: 5 (lower is better)
Translates to: HSSQVQVRSAQRTSNVNKILPCF*CDRIHH
Trigger: ATGATGAATACGGTCACACAAGAAACAAGGCAAAAT...CTTGTTTACATTTGATGTCCTCTGTGCTGAGCGCACCTGGACTTGAGAACTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp GTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAACTGCAAATTTTGCCTTGTTTCTaGTGTGACCGTATTCATCAT +
Preference number: 5 (lower is better)
Translates to: VVLHFVSMGQRAGLKELQILPCF*CDRIHH
Trigger: ATGATGAATACGGTCACACAAGAAACAAGGCAAAAT...TTGCAGTTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCAATGTGAGAAGAGTTaGCCACAGTCAGGCATGTTC +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSQCEKS*PQSGMF
Trigger: GAACATGCCTGACTGTGGCAAACTCTTCTCACATTG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp AGGGCTGGCCTGAAGGAACTGCAAGTCAGTGTCCCATTTCTGGCTATTTCATTAGTCATGGACAACTTTTaGATTTACATTATCTGGGCT +
Preference number: 5 (lower is better)
Translates to: RAGLKELQVSVPFLAISLVMDNF*IYIIWA
Trigger: AGCCCAGATAATGTAAATCAAAAAGTTGTCCATGAC...TAATGAAATAGCCAGAAATGGGACACTGACTTGCAGTTCCTTCAGGCCAGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTTCTCGCAGGTAGGATaGCTTCTTGAGAAACACTGG +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSFSQVG*LLEKHW
Trigger: CCAGTGTTTCTCAAGAAGCAATCCTACCTGCGAGAA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGCTTCTGTTGCATGGGTaGGGATTTCCACCAGAGTTA +
Preference number: 5 (lower is better)
Translates to: FPKTGNTTVVLHFVSMGQLLLHG*GFPPEL
Trigger: TAACTCTGGTGGAAATCCCAACCCATGCAACAGAAG...CTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATTCTGAGGTTTTGAGGTaGCATGTGTGCTCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNSEVLR*HVCSLR
Trigger: CCTCAGAGAGCACACATGCAACCTCAAAACCTCAGA...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGTTCCTTCTGAGGTTTaGAGGTTGCATGTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEVPSEV*RLHVCS
Trigger: AGAGCACACATGCAACCTCAAAACCTCAGAAGGAAC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS GCA 90 bp TTTCTTGTCTTTCAGTTTCTTCTGAATATGCCTCCCTTTCTTCAGTaGTATCTGTCGTGTCTGGTGTGCTCTCTTTCATGGCCAAATCTT +
Preference number: 5 (lower is better)
Translates to: FLVFQFLLNMPPFLQ*YLSCLVCSLSWPNL
Trigger: AAGATTTGGCCATGAAAGAGAGCACACCAGACACGACAGATAGCACTGAAGAAAGGGAGGCATATTCAGAAGAAACTGAAAGACAAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 90 bp TATGTGAAAGCTGATGTTCAACAACAGTCATGTCTGCAACGTCCATaGTTATCTCAAGCTCTTCCATTGTTTCCTCGATCTGAGCAGAAA +
Preference number: 5 (lower is better)
Translates to: YVKADVQQQSCLQRP*LSQALPLFPRSEQK
Trigger: TTTCTGCTCAGATCGAGGAAACAATGGAAGAGCTTGAGATAACCATGGACGTTGCAGACATGACTGTTGTTGAACATCAGCTTTCACATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCTCTGCAGCATTATTTTaGTCACCAGTCTTTTCATCA +
Preference number: 5 (lower is better)
Translates to: TGNTTVVLHFVSMGQRAGSAALF*SPVFSS
Trigger: TGATGAAAAGACTGGTGACAAAAATAATGCTGCAGA...GCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATCAAGACTGGATGTGCTaGACACTCGCTTTCTTCTCT +
Preference number: 5 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNQDWMC*TLAFFS
Trigger: AGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTG...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp GAACGATCTGGTGGCCTCTGGCTTTCATTTGTAGAAAATTTGTTTTTCCATTGTCAAGACTGGATGTGCTaGACACTCGCTTTCTTCTCT +
Preference number: 5 (lower is better)
Translates to: ERSGGLWLSFVENLFFHCQDWMC*TLAFFS
Trigger: AGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTG...ACAATGGAAAAACAAATTTTCTACAAATGAAAGCCAGAGGCCACCAGATCGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGATTTATTAGCTTCACCTaGGTTCCTCCTCCTCTTTTT +
Preference number: 5 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRFISFT*VPPPLF
Trigger: AAAAAGAGGAGGAGGAACCAAGGTGAAGCTAATAAA...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTCACTACATTTGGCTTaGGTCTTTGCATTCGACTCC +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSSLHLA*VFAFDS
Trigger: GGAGTCGAATGCAAAGACCAAAGCCAAATGTAGTGA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGGCTGGCCTGAAGGAATTCTTCTTCCTGTATTaGGTTTTGGTTTCTGGAATC +
Preference number: 5 (lower is better)
Translates to: TTVVLHFVSMGQRAGLKEFFFLY*VLVSGI
Trigger: GATTCCAGAAACCAAAACCAAATACAGGAAGAAGAA...TTCCTTCAGGCCAGCCCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCAGTTTCTCCCAAATTaGTGCAAATTTCCCCAGTGG +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSQFLPN*CKFPQW
Trigger: CCACTGGGGAAATTTGCACAAATTTGGGAGAAACTG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAACCGGTGTTTTCTTGTaGGGCTTCTGGAATATGAGA +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNETGVFL*GFWNMR
Trigger: TCTCATATTCCAGAAGCCCAACAAGAAAACACCGGT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTATGATCCTGTATCAGTaGGCTCACTGTGTTCCTTCT +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSMILYQ*AHCVPS
Trigger: AGAAGGAACACAGTGAGCCAACTGATACAGGATCAT...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGTTTTCCTGGAATGCTTaGTCTATTCTCCATCCATTT +
Preference number: 5 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRFSWNA*SILHPF
Trigger: AAATGGATGGAGAATAGACAAAGCATTCCAGGAAAA...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTTGGCATGATGTCTTGTaGATTACATGTGGAAGGGAT +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSWHDVL*ITCGRD
Trigger: ATCCCTTCCACATGTAATCAACAAGACATCATGCCA...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACAGCTTTCACTACATTaGGCTTTGGTCTTTGCATTC +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEQLSLH*ALVFAF
Trigger: GAATGCAAAGACCAAAGCCAAATGTAGTGAAAGCTG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCTGGTATCCCTTCCTaGGAGGATATTCTTCTTCTT +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNESGIPS*EDILLL
Trigger: AAGAAGAAGAATATCCTCCAAGGAAGGGATACCAGA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAATCTTTTCCAGTTTCTaGCAAACCTGTCTCTGGTTC +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEIFSSF*QTCLWF
Trigger: GAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGAT...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TGGGCCCATTTTTACACTCTTCTTTTAGCAAGGGCTGATCAGAAGAAACCTGAGATTTTGCCTTGTTTCTaGTGTGACCGTATTCATCAT +
Preference number: 5 (lower is better)
Translates to: WAHFYTLLLARADQKKPEILPCF*CDRIHH
Trigger: ATGATGAATACGGTCACACAAGAAACAAGGCAAAAT...CTCAGGTTTCTTCTGATCAGCCCTTGCTAAAAGAAGAGTGTAAAAATGGGCCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACAGTCTTGGGATAGCTaGATTCTTTCCATAGTTGTG +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEQSWDS*ILSIVV
Trigger: CACAACTATGGAAAGAATCAAGCTATCCCAAGACTG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
CDS-3UTR CAA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTCCTTCAGTTTCTCTTaGAATTTCCACTTCTGTCTC +
Preference number: 5 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQSFSFS*NFHFCL
Trigger: GAGACAGAAGTGGAAATTCAAAGAGAAACTGAAGGA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp AGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGCACTCTAGATCTAATTCTACTGCTTaGGAATCATCTCCTTCAGTT +
Preference number: 5 (lower is better)
Translates to: SHRTGNRLTVSSMNQHSRSNSTA*ESSPSV
Trigger: AACTGAAGGAGATGATTCCAAAGCAGTAGAATTAGA...TCTAGAGTGCTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp CCCAAGACAGGTAACACTACAGTAGTGCTTCATTTTGTTTCTATGGGTCAGAGGTCTAATTCTACTGCTTaGGAATCATCTCCTTCAGTT +
Preference number: 5 (lower is better)
Translates to: PKTGNTTVVLHFVSMGQRSNSTA*ESSPSV
Trigger: AACTGAAGGAGATGATTCCAAAGCAGTAGAATTAGA...CCTCTGACCCATAGAAACAAAATGAAGCACTACTGTAGTGTTACCTGTCTTGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCTCTCTGTTCAGAATaGGAAGCAGGTTCAGTTTTC +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNESLCSE*EAGSVF
Trigger: GAAAACTGAACCTGCTTCCAATTCTGAACAGAGAGA...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS TCA 90 bp GAAGGACATGTATTCTTGTGTATTTCTGCTGCAGGAGGGCTCGAATaGACAAGAACCCTCTCTAAAAGATTTGTTGCTTCCTGTTTATTA +
Preference number: 5 (lower is better)
Translates to: EGHVFLCISAAGGLE*TRTLSKRFVASCLL
Trigger: TAATAAACAGGAAGCAACAAATCTTTTAGAGAGGGTTCTTGTTCATTCGAGCCCTCCTGCAGCAGAAATACACAAGAATACATGTCCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGGTGATTCCTCTTCATaGACTGTCTCAGCATCATTT +
Preference number: 5 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNGDSSS*TVSASF
Trigger: AAATGATGCTGAGACAGTCAATGAAGAGGAATCACC...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTCTCCGTCTGTATTCTTaGCTACAGATGTTTCAGATT +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSLRLYS*LQMFQI
Trigger: AATCTGAAACATCTGTAGCAAAGAATACAGACGGAG...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAATCAGTTCTTCTTCCTGTATTaGGTTTTGGTTTCTGGAATC +
Preference number: 5 (lower is better)
Translates to: LTLSHRTGNRLTVSSMNQFFFLY*VLVSGI
Trigger: GATTCCAGAAACCAAAACCAAATACAGGAAGAAGAA...CTGATTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp TTTCTGCTTGGTGAAAGTCAGGGTCGCTGGAAATCTCAAACTCATTACAAAAGTAAGTATCTCTTCCAATaGTTTCCAAACCTGTCTCCA +
Preference number: 5 (lower is better)
Translates to: FLLGESQGRWKSQTHYKSKYLFQ*FPNLSP
Trigger: TGGAGACAGGTTTGGAAACAATTGGAAGAGATACTT...ACTTTTGTAATGAGTTTGAGATTTCCAGCGACCCTGACTTTCACCAAGCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAACTCAGAGGTACATTCTaGATAATCAATTCCTGGAAC +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNELRGTF*IINSWN
Trigger: GTTCCAGGAATTGATTATCAAGAATGTACCTCTGAG...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS TCA 90 bp TTTGCTACAGATGTTTCAGATTCATTCATGGTCTCTTTTTCCATGTaGTTCTTCTCAGCTGCAGTTTCTGAAGGTGAGTTCTTGTTCCTT +
Preference number: 5 (lower is better)
Translates to: FATDVSDSFMVSFSM*FFSAAVSEGEFLFL
Trigger: AAGGAACAAGAACTCACCTTCAGAAACTGCAGCTGAGAAGAATCACATGGAAAAAGAGACCATGAATGAATCTGAAACATCTGTAGCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp ACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGAAGGGACTTGTTTCCGTTaGTTTTCTTTATTACCTTCA +
Preference number: 5 (lower is better)
Translates to: TFDSKPQNRKQAHSKFNEGTCFR*FSLLPS
Trigger: TGAAGGTAATAAAGAAAACAAACGGAAACAAGTCCC...TTCATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS TCA 90 bp GCTGGACTAGGAACATACGGTTTATTTTCATGCCTCATCTGTTCATaGACAACACTGGCTTTATTAACACTTAAGTTTTCTACAGGATCT +
Preference number: 5 (lower is better)
Translates to: AGLGTYGLFSCLICS*TTLALLTLKFSTGS
Trigger: AGATCCTGTAGAAAACTTAAGTGTTAATAAAGCCAGTGTTGTTCATGAACAGATGAGGCATGAAAATAAACCGTATGTTCCTAGTCCAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS-3UTR CAA 90 bp TATACATTTGACTCTAAGCCACAGAACAGGAAACAGGCTCACAGTAAGTTCAATGTCATGGACAACTTTTaGATTTACATTATCTGGGCT +
Preference number: 5 (lower is better)
Translates to: YTFDSKPQNRKQAHSKFNVMDNF*IYIIWA
Trigger: AGCCCAGATAATGTAAATCAAAAAGTTGTCCATGAC...ATTGAACTTACTGTGAGCCTGTTTCCTGTTCTGTGGCTTAGAGTCAAATGTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038104.12
CDS CAA 72 bp TCCGGAGGCCTGGGAGCCTCTGGTCCACGCTGGGGATaGGGAGCGGCGGAGCCCCTGGTCCCTACACCAGGC +
Preference number: 6 (lower is better)
Translates to: SGGLGASGPRWG*GAAEPLVPTPG
Trigger: GCCTGGTGTAGGGACCAGGGGCTCCGCCGCTCCCAATCCCCAGCGTGGACCAGAGGCTCCCAGGCCTCCGGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
ENSMUST00000163097.2
CDS GCA 72 bp CATGCGCTGCCCTGTGGCTCCTCCTCGCTGGCAGACTaGTCCACAGGAGCGCCTGCTGCCTTTCCTCTCTGG +
Preference number: 6 (lower is better)
Translates to: HALPCGSSSLAD*STGAPAAFPLW
Trigger: CCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp CCTCTCTGCATGCGCTGCCCTGTGGCTCCTCCTCGCTaGCAGACTGCTCCACAGGAGCGCCTGCTGCCTTTC +
Preference number: 6 (lower is better)
Translates to: PLCMRCPVAPPR*QTAPQERLLPF
Trigger: GAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGCAGAGAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp CTTCTGCAGTGCTCGACTCCACTGCCACCTCCTCTCTaGATGCGCTGCCCTGTGGCTCCTCCTCGCTGGCAG +
Preference number: 6 (lower is better)
Translates to: LLQCSTPLPPPL*MRCPVAPPRWQ
Trigger: CTGCCAGCGAGGAGGAGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp GTTCTGCTCCCCCGGAATCCACTGCAGGCACATCTGTaGGCTCCGCTGGCTTCGGAGCTGACTCGGTGGCAG +
Preference number: 6 (lower is better)
Translates to: VLLPRNPLQAHL*APLASELTRWQ
Trigger: CTGCCACCGAGTCAGCTCCGAAGCCAGCGGAGCCCACAGATGTGCCTGCAGTGGATTCCGGGGGAGCAGAAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
ENSMUST00000163097.2
CDS GCA 72 bp TTCATCACTGCTCCCGGGAGCCTGTTCCTGGGGTTCTaGTCCCCCGGAATCCACTGCAGGCACATCTGTGGG +
Preference number: 6 (lower is better)
Translates to: FITAPGSLFLGF*SPGIHCRHICG
Trigger: CCCACAGATGTGCCTGCAGTGGATTCCGGGGGAGCAGAACCCCAGGAACAGGCTCCCGGGAGCAGTGATGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp CACTCGCTTTCTTCTCTGCTCCCGGGAGCCTGTTCCTaGGGTTCTGCTCCCCCGGAATCCACTGCAGGCACA +
Preference number: 6 (lower is better)
Translates to: HSLSSLLPGACS*GSAPPESTAGT
Trigger: TGTGCCTGCAGTGGATTCCGGGGGAGCAGAACCCCAGGAACAGGCTCCCGGGAGCAGAGAAGAAAGCGAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS GCA 72 bp CTCCTCGCTGGCAGACTGCTCCACAGGAGCGCCTGCTaGCTTTCCTCTCTGGGAAGTTCCTCCTCCAATCTC +
Preference number: 6 (lower is better)
Translates to: LLAGRLLHRSAC*LSSLGSSSSNL
Trigger: GAGATTGGAGGAGGAACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp CTCCTCCTCGCTGGCAGACTGCTCCACAGGAGCGCCTaGTGCCTTTCCTCTCTGGGAAGTTCCTCCTCCAAT +
Preference number: 6 (lower is better)
Translates to: LLLAGRLLHRSA*CLSSLGSSSSN
Trigger: ATTGGAGGAGGAACTTCCCAGAGAGGAAAGGCAGCAGGCGCTCCTGTGGAGCAGTCTGCCAGCGAGGAGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp GTTCAGCTCCTTTCCTTCTGCAGTGCTCGACTCCACTaGCACCTCCTCTCTGCATGCGCTGCCCTGTGGCTC +
Preference number: 6 (lower is better)
Translates to: VQLLSFCSARLH*HLLSACAALWL
Trigger: GAGCCACAGGGCAGCGCATGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAGGAAAGGAGCTGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp AGGGGGCACTGCCAGAAGGCTGAACAAGACTGGATGTaGTTGACACTCGCTTTCTTCTCTGCTCCCGGGAGC +
Preference number: 6 (lower is better)
Translates to: RGHCQKAEQDWM*LTLAFFSAPGS
Trigger: GCTCCCGGGAGCAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS CAA 90 bp AGAGCAGCTTGGTCACTGTCCTGCTGTAGCATGGCGGCCTCCACTTaGCAGGCTTCGGATTTCTTCCCAGGCACACAGTGCTCTGCTTCT +
Preference number: 6 (lower is better)
Translates to: RAAWSLSCCSMAAST*QASDFFPGTQCSAS
Trigger: AGAAGCAGAGCACTGTGTGCCTGGGAAGAAATCCGAAGCCTGCAAAGTGGAGGCCGCCATGCTACAGCAGGACAGTGACCAAGCTGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp TGGTGCCGCAGTCTTCAGGTCAGCACCTCTTCCTTCTaGGCAGGAGCTCTCAGCATGAGCCATGTCAGCAGA +
Preference number: 6 (lower is better)
Translates to: WCRSLQVSTSSF*AGALSMSHVSR
Trigger: TCTGCTGACATGGCTCATGCTGAGAGCTCCTGCTCAGAAGGAAGAGGTGCTGACCTGAAGACTGCGGCACCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp TCAGCACCTCTTCCTTCTGAGCAGGAGCTCTCAGCATaGGCCATGTCAGCAGAGGCAGTATTACCGGGTTCC +
Preference number: 6 (lower is better)
Translates to: SAPLPSEQELSA*AMSAEAVLPGS
Trigger: GGAACCCGGTAATACTGCCTCTGCTGACATGGCTCATGCTGAGAGCTCCTGCTCAGAAGGAAGAGGTGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp TTCTCCAGTTTCCCTCAGGTTCAGCTCCTTTCCTTCTaGAGTGCTCGACTCCACTGCCACCTCCTCTCTGCA +
Preference number: 6 (lower is better)
Translates to: FSSFPQVQLLSF*SARLHCHLLSA
Trigger: TGCAGAGAGGAGGTGGCAGTGGAGTCGAGCACTGCAGAAGGAAAGGAGCTGAACCTGAGGGAAACTGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp CTTTATCCTGTGGAGAGCCAGTGCTGCCGTCACTACTaGTCAGAATTACATCTGCCTCAGGCTGCCCTGAGG +
Preference number: 6 (lower is better)
Translates to: LYPVESQCCRHY*SELHLPQAALR
Trigger: CCTCAGGGCAGCCTGAGGCAGATGTAATTCTGAGCAGTAGTGACGGCAGCACTGGCTCTCCACAGGATAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp TCTGTGAGGGGGCACTGCCAGAAGGCTGAACAAGACTaGATGTGCTTGACACTCGCTTTCTTCTCTGCTCCC +
Preference number: 6 (lower is better)
Translates to: SVRGHCQKAEQD*MCLTLAFFSAP
Trigger: GGGAGCAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163097.2
CDS TCA 72 bp TCTTTAGCTGGAGTAGGGTTTGGCTGTGGTGCATCGTaGTCAACTGTAGATAAGGGGCGACTCTGTGAGGGG +
Preference number: 6 (lower is better)
Translates to: SLAGVGFGCGAS*STVDKGRLCEG
Trigger: CCCCTCACAGAGTCGCCCCTTATCTACAGTTGATCACGATGCACCACAGCCAAACCCTACTCCAGCTAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
ENSMUST00000163097.2
CDS TCA 72 bp CTCTGTCTGGCCTTTTGCACATTTGGTCTTGGTCTCTaGAGTCGACCCCTCACTGGGAGAGTTGTCTGGACA +
Preference number: 6 (lower is better)
Translates to: LCLAFCTFGLGL*SRPLTGRVVWT
Trigger: TGTCCAGACAACTCTCCCAGTGAGGGGTCGACTTCAGAGACCAAGACCAAATGTGCAAAAGGCCAGACAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CCA 72 bp TCTGTGAGGGGGCACTGCCAGAAGGCTGAACAAGACTaGATGTGCTTGACACTCGCTTTCTTCTCTGTGAAG +
Preference number: 6 (lower is better)
Translates to: SVRGHCQKAEQD*MCLTLAFFSVK
Trigger: CTTCACAGAGAAGAAAGCGAGTGTCAAGCACATCCAGTCTTGTTCAGCCTTCTGGCAGTGCCCCCTCACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp GGTTTTCCTAAGTCTTCCACCATTTCCTCCCCGACCTaGATCTCTCCAGACCCTCTCTCCCAAGAGACAGAA +
Preference number: 6 (lower is better)
Translates to: GFPKSSTISSPT*ISPDPLSQETE
Trigger: TTCTGTCTCTTGGGAGAGAGGGTCTGGAGAGATCCAGGTCGGGGAGGAAATGGTGGAAGACTTAGGAAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp ACTACTGCTCAGAATTACATCTGCCTCAGGCTGCCCTaGGGAATGTTCCTCTGGTTCACGTTCTCTTGGAGC +
Preference number: 6 (lower is better)
Translates to: TTAQNYICLRLP*GMFLWFTFSWS
Trigger: GCTCCAAGAGAACGTGAACCAGAGGAACATTCCTCAGGGCAGCCTGAGGCAGATGTAATTCTGAGCAGTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp ATCTGCGTGGCCTTGACTTTCACTCACTTGGCACTCTaGCACTCTGGAGGACATGTCAACTGCAACTCCACT +
Preference number: 6 (lower is better)
Translates to: ICVALTFTHLAL*HSGGHVNCNST
Trigger: AGTGGAGTTGCAGTTGACATGTCCTCCAGAGTGTCAGAGTGCCAAGTGAGTGAAAGTCAAGGCCACGCAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS GCA 72 bp CCGTCACTACTGCTCAGAATTACATCTGCCTCAGGCTaGCCTGAGGAATGTTCCTCTGGTTCACGTTCTCTT +
Preference number: 6 (lower is better)
Translates to: PSLLLRITSASG*PEECSSGSRSL
Trigger: AAGAGAACGTGAACCAGAGGAACATTCCTCAGGGCAGCCTGAGGCAGATGTAATTCTGAGCAGTAGTGACGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp GAAAACCGCTCTAGAGCATCTGGAAGCGGCATCCCTTaGTCTGTTTCATGGCGTCCCAAATTCTGTGAGCAA +
Preference number: 6 (lower is better)
Translates to: ENRSRASGSGIP*SVSWRPKFCEQ
Trigger: TTGCTCACAGAATTTGGGACGCCATGAAACAGACCAAGGGATGCCGCTTCCAGATGCTCTAGAGCGGTTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 72 bp TTTCTGCCACTGTCTTTCACATCTGACTCTGAGTCCTaGGTGGAAGCGGTAGCAGTAAGAGGGGCAAGAGGT +
Preference number: 6 (lower is better)
Translates to: FLPLSFTSDSES*VEAVAVRGARG
Trigger: ACCTCTTGCCCCTCTTACTGCTACCGCTTCCACCAAGGACTCAGAGTCAGATGTGAAAGACAGTGGCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 90 bp GCTGTATCATTTCTGCCACTGTCTTTCACATCTGACTCTGAGTCCTaGGTGGAAGCGGTAGCAGTAAGAGGGGCAAGAGGTACACTCAGT +
Preference number: 6 (lower is better)
Translates to: AVSFLPLSFTSDSES*VEAVAVRGARGTLS
Trigger: ACTGAGTGTACCTCTTGCCCCTCTTACTGCTACCGCTTCCACCAAGGACTCAGAGTCAGATGTGAAAGACAGTGGCAGAAATGATACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 90 bp CGTGTCTGGTGTGCTCTCTTTCATGGCCAAATCTTTTCCAGTTTCTaGCAAACCTGTCTCTGGTTCACTAACTGGACCGACCTCCTTCGG +
Preference number: 6 (lower is better)
Translates to: RVWCALFHGQIFSSF*QTCLWFTNWTDLLR
Trigger: CCGAAGGAGGTCGGTCCAGTTAGTGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGATTTGGCCATGAAAGAGAGCACACCAGACACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp CTAAGACTCTGCTCTTCAAGCCCCAAAGATGTAGGCTaGTCTTTCGCAGTCTCATCCCTGGAACCTTCTGAT +
Preference number: 6 (lower is better)
Translates to: LRLCSSSPKDVG*SFAVSSLEPSD
Trigger: ATCAGAAGGTTCCAGGGATGAGACTGCGAAAGAGCAGCCTACATCTTTGGGGCTTGAAGAGCAGAGTCTTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CCA 72 bp GGCCAAATCTTTTCCAGTTTCTTGCAAACCTGTCTCTaGTTCACTAACTGGACCGACCTCCTTCGGGCCATT +
Preference number: 6 (lower is better)
Translates to: GQIFSSFLQTCL*FTNWTDLLRAI
Trigger: AATGGCCCGAAGGAGGTCGGTCCAGTTAGTGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGATTTGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 90 bp TCGCAGCCTCCTCCTCCTCCTCATGACCGGATTTATCATTTTCTCTaGATGCCATCAGGGAAGGTACATTATGTTGAGGAGAGAGAGCAG +
Preference number: 6 (lower is better)
Translates to: SQPPPPPHDRIYHFL*MPSGKVHYVEEREQ
Trigger: CTGCTCTCTCTCCTCAACATAATGTACCTTCCCTGATGGCATCAAGAGAAAATGATAAATCCGGTCATGAGGAGGAGGAGGAGGCTGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp TCTGAGGACTCCCTTGCTAGTGGCATGATGTCTTGTTaGTTACATGTGGAAGGGATGGGGTCCATTCTCATC +
Preference number: 6 (lower is better)
Translates to: SEDSLASGMMSC*LHVEGMGSILI
Trigger: GATGAGAATGGACCCCATCCCTTCCACATGTAATCAACAAGACATCATGCCACTAGCAAGGGAGTCCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp ACCTGCCTCTGTTTCCATAGGGATGTCAATCATTTCTaGTCCCATCTCCCCTGGGCAAGTATCTCTTCCAAT +
Preference number: 6 (lower is better)
Translates to: TCLCFHRDVNHF*SHLPWASISSN
Trigger: ATTGGAAGAGATACTTGCCCAGGGGAGATGGGAGCAGAAATGATTGACATCCCTATGGAAACAGAGGCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp CGACCCCTCACTGGGAGAGTTGTCTGGACAACATTTTaGCTTGTTTCTTGTGTGACCGTATTCATCATGGGA +
Preference number: 6 (lower is better)
Translates to: RPLTGRVVWTTF*LVSCVTVFIMG
Trigger: TCCCATGATGAATACGGTCACACAAGAAACAAGGCAAAATGTTGTCCAGACAACTCTCCCAGTGAGGGGTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CCA 72 bp AAGGGATGGGGTCCATTCTCATCTCGGTCTCTTCACTaGGTGCTAAACCTGCAATGTCATCTATGTTCTGTG +
Preference number: 6 (lower is better)
Translates to: KGWGPFSSRSLH*VLNLQCHLCSV
Trigger: CACAGAACATAGATGACATTGCAGGTTTAGCACCCAGTGAAGAGACCGAGATGAGAATGGACCCCATCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp CTCGCGCTTCGCCTTTTTCTACTATTTGCCTCTGTCTaGCCTTTTGCACATTTGGTCTTGGTCTCTGAAGTC +
Preference number: 6 (lower is better)
Translates to: LALRLFLLFASV*PFAHLVLVSEV
Trigger: GACTTCAGAGACCAAGACCAAATGTGCAAAAGGCCAGACAGAGGCAAATAGTAGAAAAAGGCGAAGCGCGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CAA 72 bp TCGACCCCTCACTGGGAGAGTTGTCTGGACAACATTTaGCCTTGTTTCTTGTGTGACCGTATTCATCATGGG +
Preference number: 6 (lower is better)
Translates to: STPHWESCLDNI*PCFLCDRIHHG
Trigger: CCCATGATGAATACGGTCACACAAGAAACAAGGCAAAATGTTGTCCAGACAACTCTCCCAGTGAGGGGTCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CAA 90 bp TCTCTGAAGTCGACCCCTCACTGGGAGAGTTGTCTGGACAACATTTaGCCTTGTTTCTTGTGTGACCGTATTCATCATGGGAGTCCCAAT +
Preference number: 6 (lower is better)
Translates to: SLKSTPHWESCLDNI*PCFLCDRIHHGSPN
Trigger: ATTGGGACTCCCATGATGAATACGGTCACACAAGAAACAAGGCAAAATGTTGTCCAGACAACTCTCCCAGTGAGGGGTCGACTTCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CAA 90 bp GCCAGATTAGGCTTAGGTCTCTGTAGTCGACTTCTTGATTTTGGTTaGACATTTTCTGTCTGTTCAGTCTCTGGTGCCGCAGTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: ARLGLGLCSRLLDFG*TFSVCSVSGAAVFR
Trigger: CCTGAAGACTGCGGCACCAGAGACTGAACAGACAGAAAATGTCAAACCAAAATCAAGAAGTCGACTACAGAGACCTAAGCCTAATCTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp TCATGGCGTCCCAAATTCTGTGAGCAAGACTCCACATaGCCTAAGTGGCTGGATATGTCCTTGTCAGTAGTT +
Preference number: 6 (lower is better)
Translates to: SWRPKFCEQDST*PKWLDMSLSVV
Trigger: AACTACTGACAAGGACATATCCAGCCACTTAGGTCATGTGGAGTCTTGCTCACAGAATTTGGGACGCCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp TTTCCTCGATCTGAGCAGAAACTGGTTCAGGGGATCTaGGACCAACAGGTACAAACACTGGTGCTTTGCTTA +
Preference number: 6 (lower is better)
Translates to: FPRSEQKLVQGI*DQQVQTLVLCL
Trigger: TAAGCAAAGCACCAGTGTTTGTACCTGTTGGTCTCAGATCCCCTGAACCAGTTTCTGCTCAGATCGAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp CAGAAGAGAGAGGGGTTCTTCGACTCGAAACAGTCTTaGGATAGCTTGATTCTTTCCATAGTTGTGGACAGC +
Preference number: 6 (lower is better)
Translates to: QKREGFFDSKQS*DSLILSIVVDS
Trigger: GCTGTCCACAACTATGGAAAGAATCAAGCTATCCCAAGACTGTTTCGAGTCGAAGAACCCCTCTCTCTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CAA 72 bp CTTAGCTATGTCTCGCGCTTCGCCTTTTTCTACTATTaGCCTCTGTCTGGCCTTTTGCACATTTGGTCTTGG +
Preference number: 6 (lower is better)
Translates to: LSYVSRFAFFYY*PLSGLLHIWSW
Trigger: CCAAGACCAAATGTGCAAAAGGCCAGACAGAGGCAAATAGTAGAAAAAGGCGAAGCGCGAGACATAGCTAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS GCA 72 bp TTTGGTTTCGTCTTCCTCTGTGTTCTTTTCCAACTGTaGTCTATTTCACACTCAGAGGCAGAAGAGAGAGGG +
Preference number: 6 (lower is better)
Translates to: FGFVFLCVLFQL*SISHSEAEERG
Trigger: CCCTCTCTCTTCTGCCTCTGAGTGTGAAATAGAGCACAGTTGGAAAAGAACACAGAGGAAGACGAAACCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CCA 72 bp GGATTTCTCACTCAAATCAGACACAGTTTTGGCACCTaGGCTCTCTCCGTCTGTATTCTTTGCTACAGATGT +
Preference number: 6 (lower is better)
Translates to: GFLTQIRHSFGT*ALSVCILCYRC
Trigger: ACATCTGTAGCAAAGAATACAGACGGAGAGAGCCCAGGTGCCAAAACTGTGTCTGATTTGAGTGAGAAATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp CATAGGGATGTCAATCATTTCTGCTCCCATCTCCCCTaGGCAAGTATCTCTTCCAATTGTTTCCAAACCTGT +
Preference number: 6 (lower is better)
Translates to: HRDVNHFCSHLP*ASISSNCFQTC
Trigger: ACAGGTTTGGAAACAATTGGAAGAGATACTTGCCCAGGGGAGATGGGAGCAGAAATGATTGACATCCCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp ATATGCCTCCCTTTCTTCAGTGCTATCTGTCGTGTCTaGTGTGCTCTCTTTCATGGCCAAATCTTTTCCAGT +
Preference number: 6 (lower is better)
Translates to: ICLPFFSAICRV*CALFHGQIFSS
Trigger: ACTGGAAAAGATTTGGCCATGAAAGAGAGCACACCAGACACGACAGATAGCACTGAAGAAAGGGAGGCATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 72 bp GGCTTAGGTCTCTGTAGTCGACTTCTTGATTTTGGTTaGACATTTTCTGTCTGTTCAGTCTCTGGTGCCGCA +
Preference number: 6 (lower is better)
Translates to: GLGLCSRLLDFG*TFSVCSVSGAA
Trigger: TGCGGCACCAGAGACTGAACAGACAGAAAATGTCAAACCAAAATCAAGAAGTCGACTACAGAGACCTAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 72 bp TGTGCTCTCTTTCATGGCCAAATCTTTTCCAGTTTCTaGCAAACCTGTCTCTGGTTCACTAACTGGACCGAC +
Preference number: 6 (lower is better)
Translates to: CALFHGQIFSSF*QTCLWFTNWTD
Trigger: GTCGGTCCAGTTAGTGAACCAGAGACAGGTTTGCAAGAAACTGGAAAAGATTTGGCCATGAAAGAGAGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 72 bp GCAGTCTTACCTCGAATTCGTTTTGATCCACGCCCTTaGGTCAGATTTGGTTTCGTCTTCCTCTGTGTTCTT +
Preference number: 6 (lower is better)
Translates to: AVLPRIRFDPRP*VRFGFVFLCVL
Trigger: AAGAACACAGAGGAAGACGAAACCAAATCTGACCAAAGGGCGTGGATCAAAACGAATTCGAGGTAAGACTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 90 bp TCCTTCTTAGCAGTCTTACCTCGAATTCGTTTTGATCCACGCCCTTaGGTCAGATTTGGTTTCGTCTTCCTCTGTGTTCTTTTCCAACTG +
Preference number: 6 (lower is better)
Translates to: SFLAVLPRIRFDPRP*VRFGFVFLCVLFQL
Trigger: CAGTTGGAAAAGAACACAGAGGAAGACGAAACCAAATCTGACCAAAGGGCGTGGATCAAAACGAATTCGAGGTAAGACTGCTAAGAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp GGAACAAGTAAGCCATTTTCCTGGTTTGGGGTTAACTaGGAACCCTCTTTAGGTTCACTTGAATTTGGCGGT +
Preference number: 6 (lower is better)
Translates to: GTSKPFSWFGVN*EPSLGSLEFGG
Trigger: ACCGCCAAATTCAAGTGAACCTAAAGAGGGTTCTCAGTTAACCCCAAACCAGGAAAATGGCTTACTTGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp AGGTTCCTTCTTAGCAGTCTTACCTCGAATTCGTTTTaGTCCACGCCCTTTGGTCAGATTTGGTTTCGTCTT +
Preference number: 6 (lower is better)
Translates to: RFLLSSLTSNSF*STPFGQIWFRL
Trigger: AAGACGAAACCAAATCTGACCAAAGGGCGTGGATCAAAACGAATTCGAGGTAAGACTGCTAAGAAGGAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp TTTCAGTTTCTTCTGAATATGCCTCCCTTTCTTCAGTaGTATCTGTCGTGTCTGGTGTGCTCTCTTTCATGG +
Preference number: 6 (lower is better)
Translates to: FQFLLNMPPFLQ*YLSCLVCSLSW
Trigger: CCATGAAAGAGAGCACACCAGACACGACAGATAGCACTGAAGAAAGGGAGGCATATTCAGAAGAAACTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS GCA 72 bp TGGTTTAGCCTTTTGGAACCGCCTTCTTATCAGCAGTaGTGGACTAGGAACATACGGTTTATTTTCATGCCT +
Preference number: 6 (lower is better)
Translates to: WFSLLEPPSYQQ*WTRNIRFIFMP
Trigger: AGGCATGAAAATAAACCGTATGTTCCTAGTCCAGCACTGCTGATAAGAAGGCGGTTCCAAAAGGCTAAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CCA 72 bp AGAAGTGTCCAGACTCGGAATTTCTTCCCAAGTTGCTaGTATTTCTCCAGAAATAGGTGTCTCCTCTGGTAT +
Preference number: 6 (lower is better)
Translates to: RSVQTRNFFPSC*YFSRNRCLLWY
Trigger: ATACCAGAGGAGACACCTATTTCTGGAGAAATACCAGCAACTTGGGAAGAAATTCCGAGTCTGGACACTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp CAGTCTTACCTCGAATTCGTTTTGATCCACGCCCTTTaGTCAGATTTGGTTTCGTCTTCCTCTGTGTTCTTT +
Preference number: 6 (lower is better)
Translates to: QSYLEFVLIHAL*SDLVSSSSVFF
Trigger: AAAGAACACAGAGGAAGACGAAACCAAATCTGACCAAAGGGCGTGGATCAAAACGAATTCGAGGTAAGACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp GCTGATGTTCAACAACAGTCATGTCTGCAACGTCCATaGTTATCTCAAGCTCTTCCATTGTTTCCTCGATCT +
Preference number: 6 (lower is better)
Translates to: ADVQQQSCLQRP*LSQALPLFPRS
Trigger: AGATCGAGGAAACAATGGAAGAGCTTGAGATAACCATGGACGTTGCAGACATGACTGTTGTTGAACATCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 72 bp CAGTTTTGGCACCTGGGCTCTCTCCGTCTGTATTCTTaGCTACAGATGTTTCAGATTCATTCATGGTCTCTT +
Preference number: 6 (lower is better)
Translates to: QFWHLGSLRLYS*LQMFQIHSWSL
Trigger: AAGAGACCATGAATGAATCTGAAACATCTGTAGCAAAGAATACAGACGGAGAGAGCCCAGGTGCCAAAACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CAA 72 bp CTCGAATTCGTTTTGATCCACGCCCTTTGGTCAGATTaGGTTTCGTCTTCCTCTGTGTTCTTTTCCAACTGT +
Preference number: 6 (lower is better)
Translates to: LEFVLIHALWSD*VSSSSVFFSNC
Trigger: ACAGTTGGAAAAGAACACAGAGGAAGACGAAACCAAATCTGACCAAAGGGCGTGGATCAAAACGAATTCGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS TCA 72 bp AGTGCTGTCCTGATGAACTCGGTGATTCCTCTTCATTaGCTGTCTCAGCATCATTTTGAGATCTTTCTGGAT +
Preference number: 6 (lower is better)
Translates to: SAVLMNSVIPLH*LSQHHFEIFLD
Trigger: ATCCAGAAAGATCTCAAAATGATGCTGAGACAGTCAATGAAGAGGAATCACCGAGTTCATCAGGACAGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp GTATTCTTGTGTATTTCTGCTGCAGGAGGGCTCGAATaGACAAGAACCCTCTCTAAAAGATTTGTTGCTTCC +
Preference number: 6 (lower is better)
Translates to: VFLCISAAGGLE*TRTLSKRFVAS
Trigger: GGAAGCAACAAATCTTTTAGAGAGGGTTCTTGTTCATTCGAGCCCTCCTGCAGCAGAAATACACAAGAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS TCA 72 bp CTCCTCATTAGTCTGGTAGGTCTTAAAACCTTTGCCTaGCTATCCTGCTGTACACAGGATTTCTCACTCAAA +
Preference number: 6 (lower is better)
Translates to: LLISLVGLKTFA*LSCCTQDFSLK
Trigger: TTTGAGTGAGAAATCCTGTGTACAGCAGGATAGTCAGGCAAAGGTTTTAAGACCTACCAGACTAATGAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp GCTTTCTTCTCTGTGAAGAAGCAGAGGACAATGTGCTaGACTCTGCAGCATTATTTTTGTCACCAGTCTTTT +
Preference number: 6 (lower is better)
Translates to: AFFSVKKQRTMC*TLQHYFCHQSF
Trigger: AAAAGACTGGTGACAAAAATAATGCTGCAGAGTCCAGCACATTGTCCTCTGCTTCTTCACAGAGAAGAAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp AGTTGCTGGTATTTCTCCAGAAATAGGTGTCTCCTCTaGTATCCCTTCCTTGGAGGATATTCTTCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: SCWYFSRNRCLL*YPFLGGYSSSS
Trigger: AGAAGAAGAAGAATATCCTCCAAGGAAGGGATACCAGAGGAGACACCTATTTCTGGAGAAATACCAGCAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9
CDS CCA 72 bp TTTAGCCTTTTGGAACCGCCTTCTTATCAGCAGTGCTaGACTAGGAACATACGGTTTATTTTCATGCCTCAT +
Preference number: 6 (lower is better)
Translates to: FSLLEPPSYQQC*TRNIRFIFMPH
Trigger: ATGAGGCATGAAAATAAACCGTATGTTCCTAGTCCAGCACTGCTGATAAGAAGGCGGTTCCAAAAGGCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000038104.12
ENSMUST00000099262.10
ENSMUST00000109379.9
CDS CAA 72 bp TCTCCAGAAATAGGTGTCTCCTCTGGTATCCCTTCCTaGGAGGATATTCTTCTTCTTCTTCTTCCTGTATTT +
Preference number: 6 (lower is better)
Translates to: SPEIGVSSGIPS*EDILLLLLPVF
Trigger: AAATACAGGAAGAAGAAGAAGAAGAATATCCTCCAAGGAAGGGATACCAGAGGAGACACCTATTTCTGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038104.12
ENSMUST00000109379.9