Pregenerated sensors for BDH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028167Ensembl transcript IDs: ENSMUST00000029817.11, ENSMUST00000120397.8
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGAGTCACACTCTCGGGAACAATCACTAAAGGGCTTATTTTCATaGATGTCACTCTCAGAAGAGATGATCACCCAGGCAGCTTGCTTT | + |
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Preference number: 1 (lower is better) Translates to: KESHSREQSLKGLFS*MSLSEEMITQAACF Trigger: AAAGCAAGCTGCCTGGGTGATCATCTCTTCTGAGAGTGACATTCATGAAAATAAGCCCTTTAGTGATTGTTCCCGAGAGTGTGACTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCAGAAGAGACGAGAGACTATTAAAGAGTCACACTCTCGGGAACAATCACTAAAGGGCTTATTTTCATaGATGTCACTCTCAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LQKRRETIKESHSREQSLKGLFS*MSLSEE Trigger: CTCTTCTGAGAGTGACATTCATGAAAATAAGCCCTT...TAGTGATTGTTCCCGAGAGTGTGACTCTTTAATAGTCTCTCGTCTCTTCTGAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| 3UTR CCA 72 bp | GAAGAGATGATCACCCAGGCAGCTTGCTTTGCTCCGTaGCTAGGAAGGGCCTGTCTTCCCAGCAGGGATCCT | + |
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Preference number: 3 (lower is better) Translates to: EEMITQAACFAP*LGRACLPSRDP Trigger: AGGATCCCTGCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGATCATCTCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| 3UTR GCA 72 bp | ACTCTCAGAAGAGATGATCACCCAGGCAGCTTGCTTTaGTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TLRRDDHPGSLL*SVARKGLSSQQ Trigger: CTGCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGATCATCTCTTCTGAGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| 3UTR GCA 72 bp | ATGTCACTCTCAGAAGAGATGATCACCCAGGCAGCTTaGTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: MSLSEEMITQAA*FAPWLGRACLP Trigger: GGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGATCATCTCTTCTGAGAGTGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| 3UTR TCA 72 bp | CACTCTCGGGAACAATCACTAAAGGGCTTATTTTCATaGATGTCACTCTCAGAAGAGATGATCACCCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: HSREQSLKGLFS*MSLSEEMITQA Trigger: TGCCTGGGTGATCATCTCTTCTGAGAGTGACATTCATGAAAATAAGCCCTTTAGTGATTGTTCCCGAGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR TCA 90 bp | ATCACCCAGGCAGCTTGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCTGTTCTCCACCCCTTTaGTGCTGGAGGCCACAGACG | + |
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Preference number: 4 (lower is better) Translates to: ITQAACFAPWLGRACLPSCSPPL*CWRPQT Trigger: CGTCTGTGGCCTCCAGCATCAAAGGGGTGGAGAACA...GCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | CAGGCAGCTTGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCAGGGATTCCAGGATGGTTCCGTaGTGGACAAAACCAGCAACA | + |
|
Preference number: 4 (lower is better) Translates to: QAACFAPWLGRACLPSRDSRMVP*WTKPAT Trigger: TGTTGCTGGTTTTGTCCACCACGGAACCATCCTGGA...ATCCCTGCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | ATCACCCAGGCAGCTTGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCTCCAGGATGGTTCCGTaGTGGACAAAACCAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: ITQAACFAPWLGRACLPSSRMVP*WTKPAT Trigger: TGTTGCTGGTTTTGTCCACCACGGAACCATCCTGGA...GCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | CAGGCAGCTTGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCAGGGATTCTTTCTTGCAGAGATaGGGTGTCAACCGTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: QAACFAPWLGRACLPSRDSFLQR*GVNRSW Trigger: CCAGGAACGGTTGACACCCCATCTCTGCAAGAAAGA...ATCCCTGCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | ATCACCCAGGCAGCTTGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCAGGATGGTTCCGTGGTaGACAAAACCAGCAACATTA | + |
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Preference number: 4 (lower is better) Translates to: ITQAACFAPWLGRACLPSRMVPW*TKPATL Trigger: TAATGTTGCTGGTTTTGTCCACCACGGAACCATCCT...GCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| 3UTR CAA 72 bp | AATGTCACTCTCAGAAGAGATGATCACCCAGGCAGCTaGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: NVTLRRDDHPGS*LCSVARKGLSS Trigger: GGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTGGGTGATCATCTCTTCTGAGAGTGACATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR TCA 90 bp | CAGCTTCAGAAGAGACGAGAGACTATTAAAGAGTCACACTCTCGGGAACAATCATGTTCTCCACCCCTTTaGTGCTGGAGGCCACAGACG | + |
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Preference number: 4 (lower is better) Translates to: QLQKRRETIKESHSREQSCSPPL*CWRPQT Trigger: CGTCTGTGGCCTCCAGCATCAAAGGGGTGGAGAACA...TGATTGTTCCCGAGAGTGTGACTCTTTAATAGTCTCTCGTCTCTTCTGAAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | CTCTCGGGAACAATCACTAAAGGGCTTATTTTCATGAATGTCACTCTCAGAAGAGGTGTCAACCGTTCCTaGACACACACAGTTGCATCT | + |
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Preference number: 4 (lower is better) Translates to: LSGTITKGLIFMNVTLRRGVNRS*THTVAS Trigger: AGATGCAACTGTGTGTGTCCAGGAACGGTTGACACC...TCTTCTGAGAGTGACATTCATGAAAATAAGCCCTTTAGTGATTGTTCCCGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | AGAGTCACACTCTCGGGAACAATCACTAAAGGGCTTATTTTCATGAATGTCACTTCTTTCTTGCAGAGATaGGGTGTCAACCGTTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: RVTLSGTITKGLIFMNVTSFLQR*GVNRSW Trigger: CCAGGAACGGTTGACACCCCATCTCTGCAAGAAAGA...AGTGACATTCATGAAAATAAGCCCTTTAGTGATTGTTCCCGAGAGTGTGACTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR TCA 90 bp | CAGCTTCAGAAGAGACGAGAGACTATTAAAGAGTCACACTCTCGGGAACAATCATCTGTCTCTTCTTTGTaGCATCAAGGACTCGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: QLQKRRETIKESHSREQSSVSSL*HQGLEF Trigger: AAACTCGAGTCCTTGATGTCACAAAGAAGAGACAGA...TGATTGTTCCCGAGAGTGTGACTCTTTAATAGTCTCTCGTCTCTTCTGAAGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CCA 90 bp | CTCTCGGGAACAATCACTAAAGGGCTTATTTTCATGAATGTCACTCTCAGAAGAAGGATGGTTCCGTGGTaGACAAAACCAGCAACATTA | + |
|
Preference number: 4 (lower is better) Translates to: LSGTITKGLIFMNVTLRRRMVPW*TKPATL Trigger: TAATGTTGCTGGTTTTGTCCACCACGGAACCATCCT...TCTTCTGAGAGTGACATTCATGAAAATAAGCCCTTTAGTGATTGTTCCCGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR TCA 90 bp | AGAGTCACACTCTCGGGAACAATCACTAAAGGGCTTATTTTCATGAATGTCACTTCTGTCTCTTCTTTGTaGCATCAAGGACTCGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: RVTLSGTITKGLIFMNVTSVSSL*HQGLEF Trigger: AAACTCGAGTCCTTGATGTCACAAAGAAGAGACAGA...AGTGACATTCATGAAAATAAGCCCTTTAGTGATTGTTCCCGAGAGTGTGACTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CAA 90 bp | CAGGCAGCTTGCTTTGCTCCGTGGCTAGGAAGGGCCTGTCTTCCCAGCAGGGATGTTTTCAGTGCCTCTTaGGGATTGTCTCTGGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: QAACFAPWLGRACLPSRDVFSAS*GLSLAC Trigger: ACAAGCCAGAGACAATCCCAAAGAGGCACTGAAAAC...ATCCCTGCTGGGAAGACAGGCCCTTCCTAGCCACGGAGCAAAGCAAGCTGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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| CDS-3UTR CAA 90 bp | TTACCACAGCTTCAGAAGAGACGAGAGACTATTAAAGAGTCACACTCTCGGGAAGTTTTCAGTGCCTCTTaGGGATTGTCTCTGGCTTGT | + |
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Preference number: 5 (lower is better) Translates to: LPQLQKRRETIKESHSREVFSAS*GLSLAC Trigger: ACAAGCCAGAGACAATCCCAAAGAGGCACTGAAAAC...TTCCCGAGAGTGTGACTCTTTAATAGTCTCTCGTCTCTTCTGAAGCTGTGGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029817.11 ENSMUST00000120397.8 |
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