RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BDH1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046598

Ensembl transcript IDs: ENSMUST00000089759.9, ENSMUST00000115226.8, ENSMUST00000115227.10, ENSMUST00000149039.2, ENSMUST00000232433.2

Found 205 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTCATAGCGCAGGCAGTCCGAGAAAGCCTCGATCCCAAACTTGGTaGTGCAGTATGGCGAGCGGGCGGGGTTGGCCATGCGGCCCAGCA +
Preference number: 1 (lower is better)
Translates to: SHSAGSPRKPRSQTW*CSMASGRGWPCGPA
Trigger: TGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCCATACTGCATCACCAAGTTTGGGATCGAGGCTTTCTCGGACTGCCTGCGCTATGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 90 bp CAGGCAGTCCGAGAAAGCCTCGATCCCAAACTTGGTGATGCAGTATaGCGAGCGGGCGGGGTTGGCCATGCGGCCCAGCATGCTGCTGAT +
Preference number: 1 (lower is better)
Translates to: QAVRESLDPKLGDAV*RAGGVGHAAQHAAD
Trigger: ATCAGCAGCATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCCATACTGCATCACCAAGTTTGGGATCGAGGCTTTCTCGGACTGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 90 bp CATAGTCCTTGCGGACGACCTCAGGCAGGTCATCCCACATCTTCTTaGCGATGGCCTGGATGCGCTCGGGGCTGTAGAGACTGGTGGCCG +
Preference number: 1 (lower is better)
Translates to: HSPCGRPQAGHPTSS*RWPGCARGCRDWWP
Trigger: CGGCCACCAGTCTCTACAGCCCCGAGCGCATCCAGGCCATCGCCAAGAAGATGTGGGATGACCTGCCTGAGGTCGTCCGCAAGGACTATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR GCA 90 bp AGAGTCACAGCCTGTGATCAGGATAGCTTTGCCACTAGCCGCATCTaGCTGACTGGCGTAGGTCCGACGGGTGTCAGGGCTGAAGGATGC +
Preference number: 1 (lower is better)
Translates to: RVTACDQDSFATSRI*LTGVGPTGVRAEGC
Trigger: GCATCCTTCAGCCCTGACACCCGTCGGACCTACGCCAGTCAGGCAGATGCGGCTAGTGGCAAAGCTATCCTGATCACAGGCTGTGACTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 90 bp ACAAATGCATCCCGCTGTCAGGTAAATTCGTGGACCCTGGGGCCCTaGCTCCCTCTCACCTTCCCTCTCAGGCCCTATCTACTTTGCTTT +
Preference number: 1 (lower is better)
Translates to: TNASRCQVNSWTLGP*LPLTFPLRPYLLCF
Trigger: AAAGCAAAGTAGATAGGGCCTGAGAGGGAAGGTGAGAGGGAGCCAGGGCCCCAGGGTCCACGAATTTACCTGACAGCGGGATGCATTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR GCA 90 bp CCTTTGCTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTaGCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCT +
Preference number: 1 (lower is better)
Translates to: PLLSPGAGLQFQARH*QECRIGFQGGLCSS
Trigger: AGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAGCAAAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 90 bp GAGAATGTCAAGATCTCAGCTGAAAAGTCTCTGGATTCCCCCACCTaGAGCCAGCAGAGAGTCACTGACTGCTGGCCACCAGTCACACAG +
Preference number: 1 (lower is better)
Translates to: ENVKISAEKSLDSPT*SQQRVTDCWPPVTQ
Trigger: CTGTGTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAATCCAGAGACTTTTCAGCTGAGATCTTGACATTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 90 bp CTCCTTATATGTCTCCATGCTGGTGAACTCCACCTCCCCAAACGTTaGGATGCCTGCGTTGTTAACCAGGCCCCACATTCCCTTCTCAGG +
Preference number: 1 (lower is better)
Translates to: LLICLHAGELHLPKR*DACVVNQAPHSLLR
Trigger: CCTGAGAAGGGAATGTGGGGCCTGGTTAACAACGCAGGCATCTCAACGTTTGGGGAGGTGGAGTTCACCAGCATGGAGACATATAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 90 bp CACACAGAGCTACGGACGCACAGAGACATAGCACACAGTGACCTTTaGTGTGACTGGCTCAGGAGAAGGTACAGAGTTGGTCACAGGGTT +
Preference number: 1 (lower is better)
Translates to: HTELRTHRDIAHSDL*CDWLRRRYRVGHRV
Trigger: AACCCTGTGACCAACTCTGTACCTTCTCCTGAGCCAGTCACACCAAAGGTCACTGTGTGCTATGTCTCTGTGCGTCCGTAGCTCTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 90 bp GTCTCCACCGCCTTCTCCACCTCTTCACTGTTGCAGACATTGAGCTaGATGGTTCTCAGTCGGTCACTCTTCAAGCTGTCCAGTTCCTTG +
Preference number: 1 (lower is better)
Translates to: VSTAFSTSSLLQTLS*MVLSRSLFKLSSSL
Trigger: CAAGGAACTGGACAGCTTGAAGAGTGACCGACTGAGAACCATCCAGCTCAATGTCTGCAACAGTGAAGAGGTGGAGAAGGCGGTGGAGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 90 bp CTGGCTCCCTCTCACCTTCCCTCTCAGGCCCTATCTACTTTGCTTTaGAGACAGGAGCTAGAACAGTGCACCTCTGTTTGTATCCAGAGG +
Preference number: 1 (lower is better)
Translates to: LAPSHLPSQALSTLL*RQELEQCTSVCIQR
Trigger: CCTCTGGATACAAACAGAGGTGCACTGTTCTAGCTCCTGTCTTCAAAGCAAAGTAGATAGGGCCTGAGAGGGAAGGTGAGAGGGAGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 90 bp AGGGTTACTGGACTGATGGGTTCAAGTGTCTGTGGGACACAAATGTaGTTTGCCTTTGCCGTAACACTGGCGGGACTCCGTGGACACAAT +
Preference number: 1 (lower is better)
Translates to: RVTGLMGSSVCGTQM*FAFAVTLAGLRGHN
Trigger: ATTGTGTCCACGGAGTCCCGCCAGTGTTACGGCAAAGGCAAATCACATTTGTGTCCCACAGACACTTGAACCCATCAGTCCAGTAACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 90 bp CAGAGTTGGTCACAGGGTTACTGGACTGATGGGTTCAAGTGTCTGTaGGACACAAATGTGATTTGCCTTTGCCGTAACACTGGCGGGACT +
Preference number: 1 (lower is better)
Translates to: QSWSQGYWTDGFKCL*DTNVICLCRNTGGT
Trigger: AGTCCCGCCAGTGTTACGGCAAAGGCAAATCACATTTGTGTCCCACAGACACTTGAACCCATCAGTCCAGTAACCCTGTGACCAACTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 90 bp GCTGGATGGTTCTCAGTCGGTCACTCTTCAAGCTGTCCAGTTCCTTaGCCCCAGCATCACCTTTGTCCTTCATCAAACAGCCAGCAAATA +
Preference number: 1 (lower is better)
Translates to: AGWFSVGHSSSCPVP*PQHHLCPSSNSQQI
Trigger: TATTTGCTGGCTGTTTGATGAAGGACAAAGGTGATGCTGGGGTCAAGGAACTGGACAGCTTGAAGAGTGACCGACTGAGAACCATCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 90 bp CTCGAATCTTTAATGAGAATGTCAAGATCTCAGCTGAAAAGTCTCTaGATTCCCCCACCTGGAGCCAGCAGAGAGTCACTGACTGCTGGC +
Preference number: 1 (lower is better)
Translates to: LESLMRMSRSQLKSL*IPPPGASRESLTAG
Trigger: GCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAATCCAGAGACTTTTCAGCTGAGATCTTGACATTCTCATTAAAGATTCGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 90 bp AGTGTATGTAGATCTTGTCAGAGATGGCTCCAGGAAAATGGGTCATaGTCTGCATCCGAAGCCACCAGTAGTAGTCCATGGGATGGTAGC +
Preference number: 1 (lower is better)
Translates to: SVCRSCQRWLQENGS*SASEATSSSPWDGS
Trigger: GCTACCATCCCATGGACTACTACTGGTGGCTTCGGATGCAGATCATGACCCATTTTCCTGGAGCCATCTCTGACAAGATCTACATACACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR GCA 90 bp TTGTCCTTCATCAAACAGCCAGCAAATACAAGGAAGCCTTTTGAGTaGAGATGCTTGGCCAGTGAGAACCCAAATCCAGAGTCACAGCCT +
Preference number: 1 (lower is better)
Translates to: LSFIKQPANTRKPFE*RCLASENPNPESQP
Trigger: AGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCTTGTATTTGCTGGCTGTTTGATGAAGGACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 90 bp TTTATTAAACACGGATACAAATTCTCCCAAGGTGTAAAATGCCACTaGAAGACGCCAGCAGGAGGCAGGCTCTGCAGTACAAATGCATCC +
Preference number: 1 (lower is better)
Translates to: FIKHGYKFSQGVKCH*KTPAGGRLCSTNAS
Trigger: GGATGCATTTGTACTGCAGAGCCTGCCTCCTGCTGGCGTCTTTCAGTGGCATTTTACACCTTGGGAGAATTTGTATCCGTGTTTAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 90 bp GCCTCGATCCCAAACTTGGTGATGCAGTATGGCGAGCGGGCGGGGTaGGCCATGCGGCCCAGCATGCTGCTGATGTTAACGACGCGACCT +
Preference number: 2 (lower is better)
Translates to: ASIPNLVMQYGERAG*AMRPSMLLMLTTRP
Trigger: AGGTCGCGTCGTTAACATCAGCAGCATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCCATACTGCATCACCAAGTTTGGGATCGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp TGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTTCTCCTGGCGCTGGGCTTCTCCTGCCATAGTCCTTaGGGACGACCTCAGGCAGGT +
Preference number: 2 (lower is better)
Translates to: CTRLWLSRFLCFLLALGFSCHSP*GRPQAG
Trigger: ACCTGCCTGAGGTCGTCCGCAAGGACTATGGCAGGA...GAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp AGCACCATATTGGCCCTGAGGTTTAGGGCCACCCACCTGCGCCCTCCGCCCGCCCCACCTGGAACGTGGTaGGATTTGGTTTGGATCCAA +
Preference number: 2 (lower is better)
Translates to: STILALRFRATHLRPPPAPPGTW*DLVWIQ
Trigger: TTGGATCCAAACCAAATCCCACCACGTTCCAGGTGG...GGCGGGCGGAGGGCGCAGGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp TCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTCGGCCCAAGACTTGCTaGCACCTGGAACGTGGTGGG +
Preference number: 2 (lower is better)
Translates to: SLSQHCLHPPVAVQVPLLRPKTC*HLERGG
Trigger: CCCACCACGTTCCAGGTGGCAGCAAGTCTTGGGCCG...AAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp TGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTTCTCCTGGCGCTGGGCTTCCAGCCTTGGCACCACTaGTCTGTTTGCAGCACCAAG +
Preference number: 2 (lower is better)
Translates to: CTRLWLSRFLCFLLALGFQPWHH*SVCSTK
Trigger: CTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTG...GAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp ATTCCCCCACCTGGAGCCAGCAGAGAGTCACTGACTGCTGGCCACCAGTCACACCTCAGTGCCCAGCCTTaGCACCACTGGTCTGTTTGC +
Preference number: 2 (lower is better)
Translates to: IPPPGASRESLTAGHQSHLSAQP*HHWSVC
Trigger: GCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAG...GTGTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 90 bp TTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTaGCTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTGC +
Preference number: 2 (lower is better)
Translates to: LSQHCLHPPVAVQVP*LSPGAGLQFQARHC
Trigger: GCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp TCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTCCAGCAGAGAGTCACTaGCTGCTGGCCACCAGTCAC +
Preference number: 2 (lower is better)
Translates to: SLSQHCLHPPVAVQVPLLPAESH*LLATSH
Trigger: GTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGG...AAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 90 bp TTGGCCATGCGGCCCAGCATGCTGCTGATGTTAACGACGCGACCTTaGGCTCTTCGGAGAAGGGGAAGGAAGGATTTTGTGGTGCGCACG +
Preference number: 2 (lower is better)
Translates to: LAMRPSMLLMLTTRP*ALRRRGRKDFVVRT
Trigger: CGTGCGCACCACAAAATCCTTCCTTCCCCTTCTCCGAAGAGCCAAAGGTCGCGTCGTTAACATCAGCAGCATGCTGGGCCGCATGGCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp CTAGACACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCCGGCCCAAGACTTGCTaGCACCTGGAACGTGGTGGG +
Preference number: 2 (lower is better)
Translates to: LDTARSVGSVSKGVFALLRPKTC*HLERGG
Trigger: CCCACCACGTTCCAGGTGGCAGCAAGTCTTGGGCCG...GAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGTGTCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp TGTCTCAGTGCCCAGCCTTGGCACCACTGGTCTGTTTGCAGCACCAAGCATAGCTGTGGGAGCACCACATaGGCACACAAGACAACAGGC +
Preference number: 2 (lower is better)
Translates to: CLSAQPWHHWSVCSTKHSCGSTT*AHKTTG
Trigger: GCCTGTTGTCTTGTGTGCTCATGTGGTGCTCCCACA...GCTATGCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp TGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTTCTCCTGGCGCTGGGCTTCTTCCAAGGGGGTCTTTaGTCTTCTCTTTGTTCCCTG +
Preference number: 2 (lower is better)
Translates to: CTRLWLSRFLCFLLALGFFQGGL*SSLCSL
Trigger: CAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAA...GAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGCTTGGTGATGCAGTATaGCGAGCGGGCGGGGTTGGC +
Preference number: 2 (lower is better)
Translates to: VSKGVFALLFVPWQCPSRLGDAV*RAGGVG
Trigger: GCCAACCCCGCCCGCTCGCCATACTGCATCACCAAG...CCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp AAGACCCCAAGTTTGTGTGAACGAAAACGCCCGGGCCTGAGCAGGCTCCAGTTGACAGGGTTACTGGACTaGTGGGTTCAAGTGTCTGTG +
Preference number: 2 (lower is better)
Translates to: KTPSLCERKRPGLSRLQLTGLLD*WVQVSV
Trigger: CACAGACACTTGAACCCATCAGTCCAGTAACCCTGT...CAACTGGAGCCTGCTCAGGCCCGGGCGTTTTCGTTCACACAAACTTGGGGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp GTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCGGCAGGCTGAATCGATCCCAAACTTGGTaGTGCAGTATGGCGAGCGGG +
Preference number: 2 (lower is better)
Translates to: VHLCLYPEGLKAQTGRLNRSQTW*CSMASG
Trigger: CCCGCTCGCCATACTGCATCACCAAGTTTGGGATCG...ATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp TGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTTCTCCTGGCGCTGGGCTTCCAAGCAGCCTTCAAATaGAAAAGTCCCTTGATTGAG +
Preference number: 2 (lower is better)
Translates to: CTRLWLSRFLCFLLALGFQAAFK*KSPLIE
Trigger: CTCAATCAAGGGACTTTTGCATTTGAAGGCTGCTTG...GAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp CTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTGCCAGGAGTGTAGGAGGAAGCCTTTTGAGTaGAGATGCTTGGCCAGTGAG +
Preference number: 2 (lower is better)
Translates to: LSPGAGLQFQARHCQECRRKPFE*RCLASE
Trigger: CTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCT...CCTACACTCCTGGCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp TGCTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTGCCAGGAGTGTAGCACACAGTGACCTTTaGTGTGACTGGCTCAGGAGA +
Preference number: 2 (lower is better)
Translates to: CFLLALGFSFRLDTARSVAHSDL*CDWLRR
Trigger: TCTCCTGAGCCAGTCACACCAAAGGTCACTGTGTGC...TACACTCCTGGCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp ATGTGGGAGCACCACATGAGCACACAAGACAACAGGCATCTAGACCCATTGCTGCTGGATTCCCCCACCTaGAGCCAGCAGAGAGTCACT +
Preference number: 2 (lower is better)
Translates to: MWEHHMSTQDNRHLDPLLLDSPT*SQQRVT
Trigger: AGTGACTCTCTGCTGGCTCCAGGTGGGGGAATCCAG...CAGCAATGGGTCTAGATGCCTGTTGTCTTGTGTGCTCATGTGGTGCTCCCACAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAGGACTCAGTGCCCAGCCTTaGCACCACTGGTCTGTTTGC +
Preference number: 2 (lower is better)
Translates to: ATWNVVGFGLDPNTETLGLSAQP*HHWSVC
Trigger: GCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAG...TCCTAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp TCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTCCACCTGGAACGTGGTaGGATTTGGTTTGGATCCAA +
Preference number: 2 (lower is better)
Translates to: SLSQHCLHPPVAVQVPLLPPGTW*DLVWIQ
Trigger: TTGGATCCAAACCAAATCCCACCACGTTCCAGGTGG...AAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp ACCCTCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTTTGAGTGCAGATGCTTaGCCAGTGAGAACCCAAATC +
Preference number: 2 (lower is better)
Translates to: TLFVSALPAPACGCPGSFLSADA*PVRTQI
Trigger: GATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAA...AAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGAGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp ACCCTCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTATGGCTCCAGGAAAATaGGTCATGATCTGCATCCGA +
Preference number: 2 (lower is better)
Translates to: TLFVSALPAPACGCPGSFMAPGK*VMICIR
Trigger: TCGGATGCAGATCATGACCCATTTTCCTGGAGCCAT...AAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp AAGACCCCAAGTTTGTGTGAACGAAAACGCCCGGGCCTGAGCAGGCTCCAGTTGTTGCAGACATTGAGCTaGATGGTTCTCAGTCGGTCA +
Preference number: 2 (lower is better)
Translates to: KTPSLCERKRPGLSRLQLLQTLS*MVLSRS
Trigger: TGACCGACTGAGAACCATCCAGCTCAATGTCTGCAA...CAACTGGAGCCTGCTCAGGCCCGGGCGTTTTCGTTCACACAAACTTGGGGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp AAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGTGGTCACATCCCACATCTTCTTaGCGATGGCCTGGATGCGCT +
Preference number: 2 (lower is better)
Translates to: KGVFALLFVPWQCPSRWSHPTSS*RWPGCA
Trigger: AGCGCATCCAGGCCATCGCCAAGAAGATGTGGGATG...TGACCACCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp GGAGCTAGAACAGTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCCAGATGCTTGGCCAGTaGGAACCCAAATCCAGAGTC +
Preference number: 2 (lower is better)
Translates to: GARTVHLCLYPEGLKAQTQMLGQ*EPKSRV
Trigger: GACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTG...GGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCACTGTTCTAGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp TCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTGGCAGTCCTAGACTTTaGAACAAGATGCACAAAAGT +
Preference number: 2 (lower is better)
Translates to: SLSQHCLHPPVAVQVPLLGSPRL*NKMHKS
Trigger: ACTTTTGTGCATCTTGTTGCAAAGTCTAGGACTGCC...AAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp CAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGTTTCAGGCTAGACACTaGCAGGAGTGTAGGATCGGT +
Preference number: 2 (lower is better)
Translates to: QECRIGFQGGLCSSLCSLFQARH*QECRIG
Trigger: ACCGATCCTACACTCCTGGCAGTGTCTAGCCTGAAA...CAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCTGCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTACTTCTCTTTGTTCCCTaGCAGTGTCCAAGTAGGTGG +
Preference number: 2 (lower is better)
Translates to: AATWNVVGFGLDPNTETLLLFVP*QCPSRW
Trigger: CCACCTACTTGGACACTGCCAGGGAACAAAGAGAAG...TAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp TTCAAATGCAAAAGTCCCTTGATTGAGAACACAGGCTCTCTAACTGTGTCTCAGGCCTGCACCCGCCTGTaGCTGTCCAGGTTCCTTTGC +
Preference number: 2 (lower is better)
Translates to: FKCKSPLIENTGSLTVSQACTRL*LSRFLC
Trigger: GCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGC...CTGAGACACAGTTAGAGAGCCTGTGTTCTCAATCAAGGGACTTTTGCATTTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 90 bp AGCTGGATGGTTCTCAGTCGGTCACTCTTCAAGCTGTCCAGTTCCTaGACCCCAGCATCACCTTTGTCCTTCATCAAACAGCCAGCAAAT +
Preference number: 2 (lower is better)
Translates to: SWMVLSRSLFKLSSS*TPASPLSFIKQPAN
Trigger: ATTTGCTGGCTGTTTGATGAAGGACAAAGGTGATGCTGGGGTCAAGGAACTGGACAGCTTGAAGAGTGACCGACTGAGAACCATCCAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp CAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGACTCCGTGGACACAATaGAAGAGGTGTCTCGTATGT +
Preference number: 2 (lower is better)
Translates to: QECRIGFQGGLCSSLCSLTPWTQ*KRCLVC
Trigger: ACATACGAGACACCTCTTTCATTGTGTCCACGGAGT...CAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp GCAGCCTTCAAATGCAAAAGTCCCTTGATTGAGAACACAGGCTCTCTAACTGTGTGTGGGAGCACCACATaGGCACACAAGACAACAGGC +
Preference number: 2 (lower is better)
Translates to: AAFKCKSPLIENTGSLTVCGSTT*AHKTTG
Trigger: GCCTGTTGTCTTGTGTGCTCATGTGGTGCTCCCACA...CACAGTTAGAGAGCCTGTGTTCTCAATCAAGGGACTTTTGCATTTGAAGGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp GGAGCTAGAACAGTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCTTTCAGGCTAGACACTaGCAGGAGTGTAGGATCGGT +
Preference number: 2 (lower is better)
Translates to: GARTVHLCLYPEGLKAQTFQARH*QECRIG
Trigger: ACCGATCCTACACTCCTGGCAGTGTCTAGCCTGAAA...GGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCACTGTTCTAGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAGGAGAGAAGGTACAGAGTTaGTCACAGGGTTACTGGACT +
Preference number: 2 (lower is better)
Translates to: ATWNVVGFGLDPNTETLGEKVQS*SQGYWT
Trigger: AGTCCAGTAACCCTGTGACCAACTCTGTACCTTCTC...TCCTAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp ACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTACTCCGTGGACACAATaGAAGAGGTGTCTCGTATGT +
Preference number: 2 (lower is better)
Translates to: TARSVGSVSKGVFALLFVTPWTQ*KRCLVC
Trigger: ACATACGAGACACCTCTTTCATTGTGTCCACGGAGT...AACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp CTAGACACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGGATCCAAATACTaGGACCCTAGGAAACTTCAG +
Preference number: 2 (lower is better)
Translates to: LDTARSVGSVSKGVFALLFGSKY*DPRKLQ
Trigger: CTGAAGTTTCCTAGGGTCTCAGTATTTGGATCCAAA...GAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGTGTCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp CTAGACACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCGTCTCGTATGTCCTCTaGGATCTGCAAATTCTTTCA +
Preference number: 2 (lower is better)
Translates to: LDTARSVGSVSKGVFALLVSYVL*DLQILS
Trigger: TGAAAGAATTTGCAGATCGCAGAGGACATACGAGAC...GAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGTGTCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp TTCAAATGCAAAAGTCCCTTGATTGAGAACACAGGCTCTCTAACTGTGTCTCAGCTGTCCAGGTTCCTTTaGTTTCTCCTGGCGCTGGGC +
Preference number: 2 (lower is better)
Translates to: FKCKSPLIENTGSLTVSQLSRFL*FLLALG
Trigger: GCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAG...CTGAGACACAGTTAGAGAGCCTGTGTTCTCAATCAAGGGACTTTTGCATTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp ACCCTCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGATACAGATTTCGAATaGATGTTTTGGCTGGAAAAT +
Preference number: 2 (lower is better)
Translates to: TLFVSALPAPACGCPGSFDTDFE*MFWLEN
Trigger: ATTTTCCAGCCAAAACATCCATTCGAAATCTGTATC...AAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAGGAGGGTTCAAGTGTCTGTaGGACACAAATGTGATTTGC +
Preference number: 2 (lower is better)
Translates to: ATWNVVGFGLDPNTETLGGFKCL*DTNVIC
Trigger: GCAAATCACATTTGTGTCCCACAGACACTTGAACCC...TCCTAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCTGCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAAGGGCTGAAGGATGCTaGATAAAACAACAGTGTGTG +
Preference number: 2 (lower is better)
Translates to: AATWNVVGFGLDPNTETLRAEGC*IKQQCV
Trigger: CACACACTGTTGTTTTATCCAGCATCCTTCAGCCCT...TAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCTGCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAAGATCTTGTCAGAGATaGCTCCAGGAAAATGGGTCA +
Preference number: 2 (lower is better)
Translates to: AATWNVVGFGLDPNTETLRSCQR*LQENGS
Trigger: TGACCCATTTTCCTGGAGCCATCTCTGACAAGATCT...TAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp GTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCGGCAGGCTGAATGTCTCGTATGTCCTCTaGGATCTGCAAATTCTTTCA +
Preference number: 2 (lower is better)
Translates to: VHLCLYPEGLKAQTGRLNVSYVL*DLQILS
Trigger: TGAAAGAATTTGCAGATCGCAGAGGACATACGAGAC...ATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR GCA 90 bp AAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGTGGTCAGGCAGTCCTAGACTTTaGAACAAGATGCACAAAAGT +
Preference number: 2 (lower is better)
Translates to: KGVFALLFVPWQCPSRWSGSPRL*NKMHKS
Trigger: ACTTTTGTGCATCTTGTTGCAAAGTCTAGGACTGCC...TGACCACCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp AGGAAGGATTTTGTGGTGCGCACGGTTCCCCAGAGGTTCACTTCAGCCACCTCCGATACAGATTTCGAATaGATGTTTTGGCTGGAAAAT +
Preference number: 2 (lower is better)
Translates to: RKDFVVRTVPQRFTSATSDTDFE*MFWLEN
Trigger: ATTTTCCAGCCAAAACATCCATTCGAAATCTGTATC...GGAGGTGGCTGAAGTGAACCTCTGGGGAACCGTGCGCACCACAAAATCCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCGCACCATATTGGCCCTaGGGTTTAGGGCCACCCACC +
Preference number: 2 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFAPYWP*GLGPPT
Trigger: GGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGC...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp GCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAGGAAGTAGGTTTCCATCTTaGCAATCTTTTCATCGAAGT +
Preference number: 2 (lower is better)
Translates to: ATWNVVGFGLDPNTETLGSRFPS*QSFHRS
Trigger: ACTTCGATGAAAAGATTGCCAAGATGGAAACCTACT...TCCTAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR TCA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCGACGGGTGTCAGGGCTaGAGGATGCTGGATAAAACA +
Preference number: 2 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFDGCQG*RMLDKT
Trigger: TGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTC...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CCA 90 bp CAGCATCTTCACCCAGACCTAACTCGAATCTTTAATGAGAATGTCAAGATCTCAGGGTTCAAGTGTCTGTaGGACACAAATGTGATTTGC +
Preference number: 2 (lower is better)
Translates to: QHLHPDLTRIFNENVKISGFKCL*DTNVIC
Trigger: GCAAATCACATTTGTGTCCCACAGACACTTGAACCC...TGAGATCTTGACATTCTCATTAAAGATTCGAGTTAGGTCTGGGTGAAGATGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp TCCCCCACCTGGAGCCAGCAGAGAGTCACTGACTGCTaGCCACCAGTCACACAGAGCTACGGACGCACAGAG +
Preference number: 3 (lower is better)
Translates to: SPTWSQQRVTDC*PPVTQSYGRTE
Trigger: CTCTGTGCGTCCGTAGCTCTGTGTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp CGAGAAAGCCTCGATCCCAAACTTGGTGATGCAGTATaGCGAGCGGGCGGGGTTGGCCATGCGGCCCAGCAT +
Preference number: 3 (lower is better)
Translates to: RESLDPKLGDAV*RAGGVGHAAQH
Trigger: ATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCCATACTGCATCACCAAGTTTGGGATCGAGGCTTTCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 72 bp TGCGGACGACCTCAGGCAGGTCATCCCACATCTTCTTaGCGATGGCCTGGATGCGCTCGGGGCTGTAGAGAC +
Preference number: 3 (lower is better)
Translates to: CGRPQAGHPTSS*RWPGCARGCRD
Trigger: GTCTCTACAGCCCCGAGCGCATCCAGGCCATCGCCAAGAAGATGTGGGATGACCTGCCTGAGGTCGTCCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp ACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTGGCGAGCGGGCGGGGTaGGCCATGCGGCCCAGCATG +
Preference number: 3 (lower is better)
Translates to: TARSVGSVSKGVFALLFVGERAG*AMRPSM
Trigger: CATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCC...AACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 72 bp TCTGGATTCCCCCACCTGGAGCCAGCAGAGAGTCACTaGCTGCTGGCCACCAGTCACACAGAGCTACGGACG +
Preference number: 3 (lower is better)
Translates to: SGFPHLEPAESH*LLATSHTELRT
Trigger: CGTCCGTAGCTCTGTGTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAATCCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR GCA 72 bp GATTCCCCCACCTGGAGCCAGCAGAGAGTCACTGACTaGTGGCCACCAGTCACACAGAGCTACGGACGCACA +
Preference number: 3 (lower is better)
Translates to: DSPTWSQQRVTD*WPPVTQSYGRT
Trigger: TGTGCGTCCGTAGCTCTGTGTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTaGCGGAGACCGAAGGGACCTCTTCAGCTCTTCAGT +
Preference number: 3 (lower is better)
Translates to: PSPHLSPSHQVP*RRPKGPLQLFS
Trigger: ACTGAAGAGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR GCA 72 bp ACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTaGTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTA +
Preference number: 3 (lower is better)
Translates to: TACTRLWLSRFL*FLLALGFSFRL
Trigger: TAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp TGCTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTGCCAGGAGTGTAGCTGTCCAGGTTCCTTaGCTTTCTCCTGGCGCTGGG +
Preference number: 3 (lower is better)
Translates to: CFLLALGFSFRLDTARSVAVQVP*LSPGAG
Trigger: CCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGC...TACACTCCTGGCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR GCA 72 bp TGTCTCAGTGCCCAGCCTTGGCACCACTGGTCTGTTTaGAGCACCAAGCATAGCACCAATCCTGTCCTAGGC +
Preference number: 3 (lower is better)
Translates to: CLSAQPWHHWSV*STKHSTNPVLG
Trigger: GCCTAGGACAGGATTGGTGCTATGCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR GCA 72 bp TCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTaGCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTT +
Preference number: 3 (lower is better)
Translates to: SPGAGLQFQARH*QECRIGFQGGL
Trigger: AAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp CTGGGCAAGTGTCTCAGTGCCCAGCCTTGGCACCACTaGTCTGTTTGCAGCACCAAGCATAGCACCAATCCT +
Preference number: 3 (lower is better)
Translates to: LGKCLSAQPWHH*SVCSTKHSTNP
Trigger: AGGATTGGTGCTATGCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACACTTGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 72 bp TGTCTCCATGCTGGTGAACTCCACCTCCCCAAACGTTaGGATGCCTGCGTTGTTAACCAGGCCCCACATTCC +
Preference number: 3 (lower is better)
Translates to: CLHAGELHLPKR*DACVVNQAPHS
Trigger: GGAATGTGGGGCCTGGTTAACAACGCAGGCATCTCAACGTTTGGGGAGGTGGAGTTCACCAGCATGGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 72 bp AAGATCTCAGCTGAAAAGTCTCTGGATTCCCCCACCTaGAGCCAGCAGAGAGTCACTGACTGCTGGCCACCA +
Preference number: 3 (lower is better)
Translates to: KISAEKSLDSPT*SQQRVTDCWPP
Trigger: TGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAATCCAGAGACTTTTCAGCTGAGATCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp CAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGTCTGTGGGACCCTCTTaGTCTCAGCACTGCCTGCAC +
Preference number: 3 (lower is better)
Translates to: QECRIGFQGGLCSSLCSLSVGPS*SQHCLH
Trigger: GTGCAGGCAGTGCTGAGACAAAGAGGGTCCCACAGA...CAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 72 bp CTGCCTGACTGGCGTAGGTCCGACGGGTGTCAGGGCTaGAGGATGCTGGATAAAACAACAGTGTGTGTCTTA +
Preference number: 3 (lower is better)
Translates to: LPDWRRSDGCQG*RMLDKTTVCVL
Trigger: TAAGACACACACTGTTGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTCGGACCTACGCCAGTCAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp CTTTCTCCTGGCGCTGGGCTTCAGTTTCAGGCTAGACACTGCCAGGAGTGTAGGTCTTTGCTCTTCTCTTaGTTCCCTGGCAGTGTCCAA +
Preference number: 3 (lower is better)
Translates to: LSPGAGLQFQARHCQECRSLLFS*FPGSVQ
Trigger: TTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGA...CCTACACTCCTGGCAGTGTCTAGCCTGAAACTGAAGCCCAGCGCCAGGAGAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp AAGACCCCAAGTTTGTGTGAACGAAAACGCCCGGGCCTGAGCAGGCTCCAGTTGATACAAGGAAGCCTTTaGAGTGCAGATGCTTGGCCA +
Preference number: 3 (lower is better)
Translates to: KTPSLCERKRPGLSRLQLIQGSL*SADAWP
Trigger: TGGCCAAGCATCTGCACTCAAAAGGCTTCCTTGTAT...CAACTGGAGCCTGCTCAGGCCCGGGCGTTTTCGTTCACACAAACTTGGGGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 72 bp GGACTGATGGGTTCAAGTGTCTGTGGGACACAAATGTaGTTTGCCTTTGCCGTAACACTGGCGGGACTCCGT +
Preference number: 3 (lower is better)
Translates to: GLMGSSVCGTQM*FAFAVTLAGLR
Trigger: ACGGAGTCCCGCCAGTGTTACGGCAAAGGCAAATCACATTTGTGTCCCACAGACACTTGAACCCATCAGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR GCA 72 bp GATGGGTTCAAGTGTCTGTGGGACACAAATGTGATTTaGCTTTGCCGTAACACTGGCGGGACTCCGTGGACA +
Preference number: 3 (lower is better)
Translates to: DGFKCLWDTNVI*LCRNTGGTPWT
Trigger: TGTCCACGGAGTCCCGCCAGTGTTACGGCAAAGGCAAATCACATTTGTGTCCCACAGACACTTGAACCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp CTACGGACGCACAGAGACATAGCACACAGTGACCTTTaGTGTGACTGGCTCAGGAGAAGGTACAGAGTTGGT +
Preference number: 3 (lower is better)
Translates to: LRTHRDIAHSDL*CDWLRRRYRVG
Trigger: ACCAACTCTGTACCTTCTCCTGAGCCAGTCACACCAAAGGTCACTGTGTGCTATGTCTCTGTGCGTCCGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp AAATACCCGGCCCAAGACTTGCTGCCACCTGGAACGTaGTGGGATTTGGTTTGGATCCAAATACTGAGACCC +
Preference number: 3 (lower is better)
Translates to: KYPAQDLLPPGT*WDLVWIQILRP
Trigger: GGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGCAGCAAGTCTTGGGCCGGGTATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp GCCTTCTCCACCTCTTCACTGTTGCAGACATTGAGCTaGATGGTTCTCAGTCGGTCACTCTTCAAGCTGTCC +
Preference number: 3 (lower is better)
Translates to: AFSTSSLLQTLS*MVLSRSLFKLS
Trigger: GGACAGCTTGAAGAGTGACCGACTGAGAACCATCCAGCTCAATGTCTGCAACAGTGAAGAGGTGGAGAAGGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp TGTCTCAGTGCCCAGCCTTGGCACCACTGGTCTGTTTGCAGCACCAAGCATAGCACAGTGCACCTCTGTTaGTATCCAGAGGGGTTAAAA +
Preference number: 3 (lower is better)
Translates to: CLSAQPWHHWSVCSTKHSTVHLC*YPEGLK
Trigger: TTTTAACCCCTCTGGATACAAACAGAGGTGCACTGT...GCTATGCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp GCTGCCACCTGGAACGTGGTGGGATTTGGTTTGGATCCAAATACTGAGACCCTAGCGTGTGTGACAGCGTaGATGACAGAGGAAGTATCT +
Preference number: 3 (lower is better)
Translates to: AATWNVVGFGLDPNTETLACVTA*MTEEVS
Trigger: AGATACTTCCTCTGTCATCAACGCTGTCACACACGC...TAGGGTCTCAGTATTTGGATCCAAACCAAATCCCACCACGTTCCAGGTGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 72 bp CACGGATACAAATTCTCCCAAGGTGTAAAATGCCACTaGAAGACGCCAGCAGGAGGCAGGCTCTGCAGTACA +
Preference number: 3 (lower is better)
Translates to: HGYKFSQGVKCH*KTPAGGRLCST
Trigger: TGTACTGCAGAGCCTGCCTCCTGCTGGCGTCTTTCAGTGGCATTTTACACCTTGGGAGAATTTGTATCCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp GTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCGGCAGGCTGAATGGAACGTGGTGGGATTaGGTTTGGATCCAAATACTG +
Preference number: 3 (lower is better)
Translates to: VHLCLYPEGLKAQTGRLNGTWWD*VWIQIL
Trigger: CAGTATTTGGATCCAAACCAAATCCCACCACGTTCC...ATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp GTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGTTTGAGTGCAGATGCTaGGCCAGTGAGAACCCAAAT +
Preference number: 3 (lower is better)
Translates to: VSKGVFALLFVPWQCPSRFECRC*ASENPN
Trigger: ATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAA...CCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 72 bp CCTGAAGTCTATGGAGCAGGTGTGTGTGTGTGTGTGTaGTGTGTGTGTGTGTGTGTGATGTGTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: PEVYGAGVCVCV*CVCVCVMCVCV
Trigger: CACACACACACACATCACACACACACACACACATCACACACACACACACACACCTGCTCCATAGACTTCAGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 72 bp TTCTCAGTCGGTCACTCTTCAAGCTGTCCAGTTCCTTaGCCCCAGCATCACCTTTGTCCTTCATCAAACAGC +
Preference number: 3 (lower is better)
Translates to: FSVGHSSSCPVP*PQHHLCPSSNS
Trigger: GCTGTTTGATGAAGGACAAAGGTGATGCTGGGGTCAAGGAACTGGACAGCTTGAAGAGTGACCGACTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR TCA 72 bp AGATCTTGTCAGAGATGGCTCCAGGAAAATGGGTCATaGTCTGCATCCGAAGCCACCAGTAGTAGTCCATGG +
Preference number: 3 (lower is better)
Translates to: RSCQRWLQENGS*SASEATSSSPW
Trigger: CCATGGACTACTACTGGTGGCTTCGGATGCAGATCATGACCCATTTTCCTGGAGCCATCTCTGACAAGATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 72 bp GCTCAGGAGAAGGTACAGAGTTGGTCACAGGGTTACTaGACTGATGGGTTCAAGTGTCTGTGGGACACAAAT +
Preference number: 3 (lower is better)
Translates to: AQEKVQSWSQGY*TDGFKCLWDTN
Trigger: ATTTGTGTCCCACAGACACTTGAACCCATCAGTCCAGTAACCCTGTGACCAACTCTGTACCTTCTCCTGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp TGTCTCAGTGCCCAGCCTTGGCACCACTGGTCTGTTTGCAGCACCAAGCATAGCGGCTGGAAAATGATTTaGGATTCTATTCCAATAACC +
Preference number: 3 (lower is better)
Translates to: CLSAQPWHHWSVCSTKHSGWKMI*DSIPIT
Trigger: GGTTATTGGAATAGAATCCAAAATCATTTTCCAGCC...GCTATGCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp CAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGACAGTGCACCTCTGTTaGTATCCAGAGGGGTTAAAA +
Preference number: 3 (lower is better)
Translates to: QECRIGFQGGLCSSLCSLTVHLC*YPEGLK
Trigger: TTTTAACCCCTCTGGATACAAACAGAGGTGCACTGT...CAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 72 bp GGAGAAGGTACAGAGTTGGTCACAGGGTTACTGGACTaGTGGGTTCAAGTGTCTGTGGGACACAAATGTGAT +
Preference number: 3 (lower is better)
Translates to: GEGTELVTGLLD*WVQVSVGHKCD
Trigger: ATCACATTTGTGTCCCACAGACACTTGAACCCATCAGTCCAGTAACCCTGTGACCAACTCTGTACCTTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR TCA 72 bp TCTCACCTTCCCTCTCAGGCCCTATCTACTTTGCTTTaGAGACAGGAGCTAGAACAGTGCACCTCTGTTTGT +
Preference number: 3 (lower is better)
Translates to: SHLPSQALSTLL*RQELEQCTSVC
Trigger: ACAAACAGAGGTGCACTGTTCTAGCTCCTGTCTTCAAAGCAAAGTAGATAGGGCCTGAGAGGGAAGGTGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp TTAATGAGAATGTCAAGATCTCAGCTGAAAAGTCTCTaGATTCCCCCACCTGGAGCCAGCAGAGAGTCACTG +
Preference number: 3 (lower is better)
Translates to: LMRMSRSQLKSL*IPPPGASRESL
Trigger: CAGTGACTCTCTGCTGGCTCCAGGTGGGGGAATCCAGAGACTTTTCAGCTGAGATCTTGACATTCTCATTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CCA 72 bp GGCGTAGGTCCGACGGGTGTCAGGGCTGAAGGATGCTaGATAAAACAACAGTGTGTGTCTTATTATAAAACG +
Preference number: 3 (lower is better)
Translates to: GVGPTGVRAEGC*IKQQCVSYYKT
Trigger: CGTTTTATAATAAGACACACACTGTTGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTCGGACCTACGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp TCTTCAGTGTATGTAGATCTTGTCAGAGATGGCTCCAGGAAAATGGGTCATGATGTGATCAGGATAGCTTaGCCACTAGCCGCATCTGCC +
Preference number: 3 (lower is better)
Translates to: SSVYVDLVRDGSRKMGHDVIRIA*PLAASA
Trigger: GGCAGATGCGGCTAGTGGCAAAGCTATCCTGATCAC...ATCATGACCCATTTTCCTGGAGCCATCTCTGACAAGATCTACATACACTGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp GCAGCCTTCAAATGCAAAAGTCCCTTGATTGAGAACACAGGCTCTCTAACTGTGACCCCAGCATCACCTTaGTCCTTCATCAAACAGCCA +
Preference number: 3 (lower is better)
Translates to: AAFKCKSPLIENTGSLTVTPASP*SFIKQP
Trigger: TGGCTGTTTGATGAAGGACAAAGGTGATGCTGGGGT...CACAGTTAGAGAGCCTGTGTTCTCAATCAAGGGACTTTTGCATTTGAAGGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp CATCTTCACCCAGACCTAACTCGAATCTTTAATGAGAATGTCAAGATCTCAGCTTCCACCACACTGACCTaGACACCCAGAGGGTGCATC +
Preference number: 3 (lower is better)
Translates to: HLHPDLTRIFNENVKISASTTLT*TPRGCI
Trigger: GATGCACCCTCTGGGTGTCAAGGTCAGTGTGGTGGA...AGCTGAGATCTTGACATTCTCATTAAAGATTCGAGTTAGGTCTGGGTGAAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR GCA 72 bp ACTGGCGTAGGTCCGACGGGTGTCAGGGCTGAAGGATaGTGGATAAAACAACAGTGTGTGTCTTATTATAAA +
Preference number: 3 (lower is better)
Translates to: TGVGPTGVRAEG*WIKQQCVSYYK
Trigger: TTTATAATAAGACACACACTGTTGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTCGGACCTACGCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR GCA 72 bp ATCAAACAGCCAGCAAATACAAGGAAGCCTTTTGAGTaGAGATGCTTGGCCAGTGAGAACCCAAATCCAGAG +
Preference number: 3 (lower is better)
Translates to: IKQPANTRKPFE*RCLASENPNPE
Trigger: CTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCTTGTATTTGCTGGCTGTTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR-3UTR CAA 90 bp CATCTTCACCCAGACCTAACTCGAATCTTTAATGAGAATGTCAAGATCTCAGCTTCACTGTTGCAGACATaGAGCTGGATGGTTCTCAGT +
Preference number: 3 (lower is better)
Translates to: HLHPDLTRIFNENVKISASLLQT*SWMVLS
Trigger: ACTGAGAACCATCCAGCTCAATGTCTGCAACAGTGA...AGCTGAGATCTTGACATTCTCATTAAAGATTCGAGTTAGGTCTGGGTGAAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CCA 72 bp GTTCTGTTTACTCATGAGACTTACATAAGGATCAAATaGGATACAGATTTCGAATGGATGTTTTGGCTGGAA +
Preference number: 3 (lower is better)
Translates to: VLFTHETYIRIK*DTDFEWMFWLE
Trigger: TTCCAGCCAAAACATCCATTCGAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
ENSMUST00000232433.2
CDS-3UTR GCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGATGGCGATGGCCTGGATaGGCTCGGGGCTGTAGAGAC +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGWRWPG*ARGCRD
Trigger: GTCTCTACAGCCCCGAGCGCATCCAGGCCATCGCCA...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACTTGGTGATGCAGTATaGCGAGCGGGCGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGLGDAV*RAGGVG
Trigger: GCCAACCCCGCCCGCTCGCCATACTGCATCACCAAG...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp CTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTCGCTGTGACAGGGGTCTaGAGAGACGGGCAGCTAGCA +
Preference number: 4 (lower is better)
Translates to: LSPSHQVPWRRPKGPLQLAVTGV*RDGQLA
Trigger: TGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGC...GAGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
ENSMUST00000232433.2
CDS-3UTR CCA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTCTTGGTGATGCAGTATaGCGAGCGGGCGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: SFSLPPGSLAETEGTSSALGDAV*RAGGVG
Trigger: GCCAACCCCGCCCGCTCGCCATACTGCATCACCAAG...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
3UTR CAA 72 bp ACCGGCAGGCTGAATTCGCTCTCTGTGGGACCCTCTTaGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTC +
Preference number: 4 (lower is better)
Translates to: TGRLNSLSVGPS*SQHCLHPPVAV
Trigger: GACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGAGGGTCCCACAGAGAGCGAATTCAGCCTGCCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
CDS-3UTR GCA 90 bp AGCACCATATTGGCCCTGAGGTTTAGGGCCACCCACCTGCGCCCTCCGCCCGCCCATCGAAGTACTTCCTaGCATAGTCCTTGCGGACGA +
Preference number: 4 (lower is better)
Translates to: STILALRFRATHLRPPPAHRSTS*HSPCGR
Trigger: TCGTCCGCAAGGACTATGGCAGGAAGTACTTCGATG...GGCGGGCGGAGGGCGCAGGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTACATCTTCTTGGCGATaGCCTGGATGCGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: SFSLPPGSLAETEGTSSATSSWR*PGCARG
Trigger: GCCCCGAGCGCATCCAGGCCATCGCCAAGAAGATGT...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACATCCCACATCTTCTTaGCGATGGCCTGGATGCGCT +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGHPTSS*RWPGCA
Trigger: AGCGCATCCAGGCCATCGCCAAGAAGATGTGGGATG...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp AGCACCATATTGGCCCTGAGGTTTAGGGCCACCCACCTGCGCCCTCCGCCCGCCACCAGTAGTAGTCCATaGGATGGTAGCGGGTATACG +
Preference number: 4 (lower is better)
Translates to: STILALRFRATHLRPPPATSSSP*DGSGYT
Trigger: CGTATACCCGCTACCATCCCATGGACTACTACTGGT...GGCGGGCGGAGGGCGCAGGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
3UTR CAA 72 bp CCAAACTTGGTGATGCAGTATGGCGAGCGGGCGGGGTaGGCCATGCGGCCCAGCATGCTGCTGATGTTAACG +
Preference number: 4 (lower is better)
Translates to: PNLVMQYGERAG*AMRPSMLLMLT
Trigger: CGTTAACATCAGCAGCATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCCATACTGCATCACCAAGTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
CDS-3UTR TCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAGACGGGTGTCAGGGCTaGAGGATGCTGGATAAAACA +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGDGCQG*RMLDKT
Trigger: TGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTC...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR TCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACAGATGCTTGGCCAGTaGGAACCCAAATCCAGAGTC +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGQMLGQ*EPKSRV
Trigger: GACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTG...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp GCAAGTGTCTCAGTGCCCAGCCTTGGCACCACTGGTCTGTTTGCAGCACCAAGCACATCTTCTTGGCGATaGCCTGGATGCGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: ASVSVPSLGTTGLFAAPSTSSWR*PGCARG
Trigger: GCCCCGAGCGCATCCAGGCCATCGCCAAGAAGATGT...GCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACACTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp AGCACCATATTGGCCCTGAGGTTTAGGGCCACCCACCTGCGCCCTCCGCCCGCCATGGCTCCAGGAAAATaGGTCATGATCTGCATCCGA +
Preference number: 4 (lower is better)
Translates to: STILALRFRATHLRPPPAMAPGK*VMICIR
Trigger: TCGGATGCAGATCATGACCCATTTTCCTGGAGCCAT...GGCGGGCGGAGGGCGCAGGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAAGGAAGCCTTTTGAGTaGAGATGCTTGGCCAGTGAG +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGRKPFE*RCLASE
Trigger: CTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCT...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTCATCCCACATCTTCTTaGCGATGGCCTGGATGCGCT +
Preference number: 4 (lower is better)
Translates to: SFSLPPGSLAETEGTSSAHPTSS*RWPGCA
Trigger: AGCGCATCCAGGCCATCGCCAAGAAGATGTGGGATG...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAACCAGTAGTAGTCCATaGGATGGTAGCGGGTATACG +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGTSSSP*DGSGYT
Trigger: CGTATACCCGCTACCATCCCATGGACTACTACTGGT...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp AGCACCATATTGGCCCTGAGGTTTAGGGCCACCCACCTGCGCCCTCCGCCCGCCAGATCTTGTCAGAGATaGCTCCAGGAAAATGGGTCA +
Preference number: 4 (lower is better)
Translates to: STILALRFRATHLRPPPARSCQR*LQENGS
Trigger: TGACCCATTTTCCTGGAGCCATCTCTGACAAGATCT...GGCGGGCGGAGGGCGCAGGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR TCA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTCAGATGCTTGGCCAGTaGGAACCCAAATCCAGAGTC +
Preference number: 4 (lower is better)
Translates to: SFSLPPGSLAETEGTSSAQMLGQ*EPKSRV
Trigger: GACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTG...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp CTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTCCATCGAAGTACTTCCTaGCATAGTCCTTGCGGACGA +
Preference number: 4 (lower is better)
Translates to: LSPSHQVPWRRPKGPLQLHRSTS*HSPCGR
Trigger: TCGTCCGCAAGGACTATGGCAGGAAGTACTTCGATG...GAGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
3UTR CAA 72 bp TACGGGGTGGCGGCGGTCAAGGCGTGTGTGACAGCGTaGATGACAGAGGAAGTATCTGTGGAACCGCTGTTG +
Preference number: 4 (lower is better)
Translates to: YGVAAVKACVTA*MTEEVSVEPLL
Trigger: CAACAGCGGTTCCACAGATACTTCCTCTGTCATCAACGCTGTCACACACGCCTTGACCGCCGCCACCCCGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
CDS-3UTR CCA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAAGGGCTGAAGGATGCTaGATAAAACAACAGTGTGTG +
Preference number: 4 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGRAEGC*IKQQCV
Trigger: CACACACTGTTGTTTTATCCAGCATCCTTCAGCCCT...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp GTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCGGCAGGCTGAATCTTGGTGATGCAGTATaGCGAGCGGGCGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: VHLCLYPEGLKAQTGRLNLGDAV*RAGGVG
Trigger: GCCAACCCCGCCCGCTCGCCATACTGCATCACCAAG...ATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp AAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGTGGTCAGCTGTGACAGGGGTCTaGAGAGACGGGCAGCTAGCA +
Preference number: 4 (lower is better)
Translates to: KGVFALLFVPWQCPSRWSAVTGV*RDGQLA
Trigger: TGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGC...TGACCACCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 72 bp CACATGAGCACACAAGACAACAGGCATCTAGACCCATaGCTGGGCAAGTGTCTCAGTGCCCAGCCTTGGCAC +
Preference number: 4 (lower is better)
Translates to: HMSTQDNRHLDP*LGKCLSAQPWH
Trigger: GTGCCAAGGCTGGGCACTGAGACACTTGCCCAGCAATGGGTCTAGATGCCTGTTGTCTTGTGTGCTCATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 72 bp GACCTTTGGCTCTTCGGAGAAGGGGAAGGAAGGATTTaGTGGTGCGCACGGTTCCCCAGAGGTTCACTTCAG +
Preference number: 4 (lower is better)
Translates to: DLWLFGEGEGRI*WCARFPRGSLQ
Trigger: CTGAAGTGAACCTCTGGGGAACCGTGCGCACCACAAAATCCTTCCTTCCCCTTCTCCGAAGAGCCAAAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
3UTR CAA 72 bp CGGCCCAGCATGCTGCTGATGTTAACGACGCGACCTTaGGCTCTTCGGAGAAGGGGAAGGAAGGATTTTGTG +
Preference number: 4 (lower is better)
Translates to: RPSMLLMLTTRP*ALRRRGRKDFV
Trigger: CACAAAATCCTTCCTTCCCCTTCTCCGAAGAGCCAAAGGTCGCGTCGTTAACATCAGCAGCATGCTGGGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
CDS-3UTR CCA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTAGGGCTGAAGGATGCTaGATAAAACAACAGTGTGTG +
Preference number: 4 (lower is better)
Translates to: SFSLPPGSLAETEGTSSARAEGC*IKQQCV
Trigger: CACACACTGTTGTTTTATCCAGCATCCTTCAGCCCT...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp GGAGCTAGAACAGTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCTCCTGCCATAGTCCTTaGGGACGACCTCAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: GARTVHLCLYPEGLKAQTSCHSP*GRPQAG
Trigger: ACCTGCCTGAGGTCGTCCGCAAGGACTATGGCAGGA...GGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCACTGTTCTAGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTTTGAGTGCAGATGCTTaGCCAGTGAGAACCCAAATC +
Preference number: 4 (lower is better)
Translates to: SLSQHCLHPPVAVQVPLLLSADA*PVRTQI
Trigger: GATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAA...AAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp ACCCTCTTTGTCTCAGCACTGCCTGCACCCGCCTGTGGCTGTCCAGGTTCCTTTAGATCTTGTCAGAGATaGCTCCAGGAAAATGGGTCA +
Preference number: 4 (lower is better)
Translates to: TLFVSALPAPACGCPGSFRSCQR*LQENGS
Trigger: TGACCCATTTTCCTGGAGCCATCTCTGACAAGATCT...AAAGGAACCTGGACAGCCACAGGCGGGTGCAGGCAGTGCTGAGACAAAGAGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR TCA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCACGATCCCAAACTTGGTaGTGCAGTATGGCGAGCGGG +
Preference number: 4 (lower is better)
Translates to: STANQKVNSLPSSFSLPPRSQTW*CSMASG
Trigger: CCCGCTCGCCATACTGCATCACCAAGTTTGGGATCG...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCATCCTGCCATAGTCCTTaGGGACGACCTCAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: STANQKVNSLPSSFSLPPSCHSP*GRPQAG
Trigger: ACCTGCCTGAGGTCGTCCGCAAGGACTATGGCAGGA...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp ACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCATCCCACATCTTCTTaGCGATGGCCTGGATGCGCT +
Preference number: 4 (lower is better)
Translates to: TARSVGSVSKGVFALLFVHPTSS*RWPGCA
Trigger: AGCGCATCCAGGCCATCGCCAAGAAGATGTGGGATG...AACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp AAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGTGGTCAAGGAAGCCTTTTGAGTaGAGATGCTTGGCCAGTGAG +
Preference number: 4 (lower is better)
Translates to: KGVFALLFVPWQCPSRWSRKPFE*RCLASE
Trigger: CTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCT...TGACCACCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTAGTAGGTTTCCATCTTaGCAATCTTTTCATCGAAGT +
Preference number: 4 (lower is better)
Translates to: SFSLPPGSLAETEGTSSASRFPS*QSFHRS
Trigger: ACTTCGATGAAAAGATTGCCAAGATGGAAACCTACT...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
3UTR CAA 72 bp GCTTTGAAGACAGGAGCTAGAACAGTGCACCTCTGTTaGTATCCAGAGGGGTTAAAAGCCCAAACCGGCAGG +
Preference number: 4 (lower is better)
Translates to: ALKTGARTVHLC*YPEGLKAQTGR
Trigger: CCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCACTGTTCTAGCTCCTGTCTTCAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
3UTR CAA 72 bp CCAGCAAATACAAGGAAGCCTTTTGAGTGCAGATGCTaGGCCAGTGAGAACCCAAATCCAGAGTCACAGCCT +
Preference number: 4 (lower is better)
Translates to: PANTRKPFECRC*ASENPNPESQP
Trigger: AGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCTTGTATTTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
CDS-3UTR CCA 90 bp ACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTTTGCAGACATTGAGCTaGATGGTTCTCAGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: TARSVGSVSKGVFALLFVLQTLS*MVLSRS
Trigger: TGACCGACTGAGAACCATCCAGCTCAATGTCTGCAA...AACAAAGAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCCTCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCATTGAGTGCAGATGCTTaGCCAGTGAGAACCCAAATC +
Preference number: 4 (lower is better)
Translates to: SSTANQKVNSLPSSFSLPLSADA*PVRTQI
Trigger: GATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAA...TGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCATTGCAGACATTGAGCTaGATGGTTCTCAGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: STANQKVNSLPSSFSLPPLQTLS*MVLSRS
Trigger: TGACCGACTGAGAACCATCCAGCTCAATGTCTGCAA...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCCTCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCATTGCAGACATTGAGCTaGATGGTTCTCAGTCGGTCA +
Preference number: 4 (lower is better)
Translates to: SSTANQKVNSLPSSFSLPLQTLS*MVLSRS
Trigger: TGACCGACTGAGAACCATCCAGCTCAATGTCTGCAA...TGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCCTCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCAATGGCTCCAGGAAAATaGGTCATGATCTGCATCCGA +
Preference number: 4 (lower is better)
Translates to: SSTANQKVNSLPSSFSLPMAPGK*VMICIR
Trigger: TCGGATGCAGATCATGACCCATTTTCCTGGAGCCAT...TGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCTGGCGATGGCCTGGATaGGCTCGGGGCTGTAGAGAC +
Preference number: 4 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFWRWPG*ARGCRD
Trigger: GTCTCTACAGCCCCGAGCGCATCCAGGCCATCGCCA...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp AAGGTTAAAATAGGTCTTCCTAAGACAGTGGGTAATCCTCAACAGCTAATCAAAGCTGTGACAGGGGTCTaGAGAGACGGGCAGCTAGCA +
Preference number: 4 (lower is better)
Translates to: KVKIGLPKTVGNPQQLIKAVTGV*RDGQLA
Trigger: TGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGC...TTTGATTAGCTGTTGAGGATTACCCACTGTCTTAGGAAGACCTATTTTAACCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
ENSMUST00000232433.2
CDS-3UTR CCA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCAAGATCTTGTCAGAGATaGCTCCAGGAAAATGGGTCA +
Preference number: 4 (lower is better)
Translates to: STANQKVNSLPSSFSLPPRSCQR*LQENGS
Trigger: TGACCCATTTTCCTGGAGCCATCTCTGACAAGATCT...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
3UTR CAA 72 bp CTTCAGGGACAAGCAGCCTTCAAATGCAAAAGTCCCTaGATTGAGAACACAGGCTCTCTAACTGTGTCTCAG +
Preference number: 4 (lower is better)
Translates to: LQGQAAFKCKSP*IENTGSLTVSQ
Trigger: CTGAGACACAGTTAGAGAGCCTGTGTTCTCAATCAAGGGACTTTTGCATTTGAAGGCTGCTTGTCCCTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000115227.10
ENSMUST00000232433.2
CDS-3UTR GCA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCTCCTGCCATAGTCCTTaGGGACGACCTCAGGCAGGT +
Preference number: 4 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFSCHSP*GRPQAG
Trigger: ACCTGCCTGAGGTCGTCCGCAAGGACTATGGCAGGA...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp AAGGTTAAAATAGGTCTTCCTAAGACAGTGGGTAATCCTCAACAGCTAATCAAACATCGAAGTACTTCCTaGCATAGTCCTTGCGGACGA +
Preference number: 4 (lower is better)
Translates to: KVKIGLPKTVGNPQQLIKHRSTS*HSPCGR
Trigger: TCGTCCGCAAGGACTATGGCAGGAAGTACTTCGATG...TTTGATTAGCTGTTGAGGATTACCCACTGTCTTAGGAAGACCTATTTTAACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp GCAGCCTTCAAATGCAAAAGTCCCTTGATTGAGAACACAGGCTCTCTAACTGTGAGTAGGTTTCCATCTTaGCAATCTTTTCATCGAAGT +
Preference number: 4 (lower is better)
Translates to: AAFKCKSPLIENTGSLTVSRFPS*QSFHRS
Trigger: ACTTCGATGAAAAGATTGCCAAGATGGAAACCTACT...CACAGTTAGAGAGCCTGTGTTCTCAATCAAGGGACTTTTGCATTTGAAGGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR GCA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCAGGAAGCCTTTTGAGTaGAGATGCTTGGCCAGTGAG +
Preference number: 4 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFRKPFE*RCLASE
Trigger: CTCACTGGCCAAGCATCTGCACTCAAAAGGCTTCCT...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCTTGAGTGCAGATGCTTaGCCAGTGAGAACCCAAATC +
Preference number: 4 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFLSADA*PVRTQI
Trigger: GATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAA...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CCA 90 bp AAGGTTAAAATAGGTCTTCCTAAGACAGTGGGTAATCCTCAACAGCTAATCAAAAGTAGGTTTCCATCTTaGCAATCTTTTCATCGAAGT +
Preference number: 4 (lower is better)
Translates to: KVKIGLPKTVGNPQQLIKSRFPS*QSFHRS
Trigger: ACTTCGATGAAAAGATTGCCAAGATGGAAACCTACT...TTTGATTAGCTGTTGAGGATTACCCACTGTCTTAGGAAGACCTATTTTAACCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAGGCGAGCGGGCGGGGTaGGCCATGCGGCCCAGCATG +
Preference number: 5 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGGERAG*AMRPSM
Trigger: CATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCC...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTGGCGAGCGGGCGGGGTaGGCCATGCGGCCCAGCATG +
Preference number: 5 (lower is better)
Translates to: SFSLPPGSLAETEGTSSAGERAG*AMRPSM
Trigger: CATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCC...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp GTTTCCAAGGGGGTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGGGCGAGCGGGCGGGGTaGGCCATGCGGCCCAGCATG +
Preference number: 5 (lower is better)
Translates to: VSKGVFALLFVPWQCPSRGERAG*AMRPSM
Trigger: CATGCTGGGCCGCATGGCCAACCCCGCCCGCTCGCC...CCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGACCCCCTTGGAAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGATCATCCCACATCTTCTaGGCGATGGCCTGGATGCGC +
Preference number: 5 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGSSHIF*AMAWMR
Trigger: GCGCATCCAGGCCATCGCCAAGAAGATGTGGGATGA...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTCGTGGCCGCTATGAAGTaGCCAGGTTCCACCACACTG +
Preference number: 5 (lower is better)
Translates to: LSPSHQVPWRRPKGPLQLVAAMK*PGSTTL
Trigger: CAGTGTGGTGGAACCTGGCAACTTCATAGCGGCCAC...GAGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS CCA 90 bp CTGGGAGCTGTGACAGGGGTCTGGAGAGACGGGCAGCTAGCATCGTaGCACCAAGTTGTAAGACGCTCTGCTTCCTTCTGGTGGCTCTGG +
Preference number: 5 (lower is better)
Translates to: LGAVTGVWRDGQLAS*HQVVRRSASFWWLW
Trigger: CCAGAGCCACCAGAAGGAAGCAGAGCGTCTTACAACTTGGTGCCACGATGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGCTCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149039.2
CDS-3UTR CAA 90 bp AGCACCATATTGGCCCTGAGGTTTAGGGCCACCCACCTGCGCCCTCCGCCCGCCTCACTGTTGCAGACATaGAGCTGGATGGTTCTCAGT +
Preference number: 5 (lower is better)
Translates to: STILALRFRATHLRPPPASLLQT*SWMVLS
Trigger: ACTGAGAACCATCCAGCTCAATGTCTGCAACAGTGA...GGCGGGCGGAGGGCGCAGGTGGGTGGCCCTAAACCTCAGGGCCAATATGGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp ATTCCCCCACCTGGAGCCAGCAGAGAGTCACTGACTGCTGGCCACCAGTCACACTCCACCACACTGACCTaGACACCCAGAGGGTGCATC +
Preference number: 5 (lower is better)
Translates to: IPPPGASRESLTAGHQSHSTTLT*TPRGCI
Trigger: GATGCACCCTCTGGGTGTCAAGGTCAGTGTGGTGGA...GTGTGACTGGTGGCCAGCAGTCAGTGACTCTCTGCTGGCTCCAGGTGGGGGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAACCCCAGCATCACCTTaGTCCTTCATCAAACAGCCA +
Preference number: 5 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGTPASP*SFIKQP
Trigger: TGGCTGTTTGATGAAGGACAAAGGTGATGCTGGGGT...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS CCA 90 bp TGTCACGGACACTTAGGGCTTTTCCTGGGAGCTGTGACAGGGGTCTaGAGAGACGGGCAGCTAGCATCGTGGCACCAAGTTGTAAGACGC +
Preference number: 5 (lower is better)
Translates to: CHGHLGLFLGAVTGV*RDGQLASWHQVVRR
Trigger: GCGTCTTACAACTTGGTGCCACGATGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGCTCCCAGGAAAAGCCCTAAGTGTCCGTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149039.2
CDS-3UTR CAA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAATACAAGGAAGCCTTTaGAGTGCAGATGCTTGGCCA +
Preference number: 5 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGIQGSL*SADAWP
Trigger: TGGCCAAGCATCTGCACTCAAAAGGCTTCCTTGTAT...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TGCACCCGCCTGTGGCTGTCCAGGTTCCTTTGCTTTCTCCTGGCGCTGGGCTTCACCCCAGCATCACCTTaGTCCTTCATCAAACAGCCA +
Preference number: 5 (lower is better)
Translates to: CTRLWLSRFLCFLLALGFTPASP*SFIKQP
Trigger: TGGCTGTTTGATGAAGGACAAAGGTGATGCTGGGGT...GAAGCCCAGCGCCAGGAGAAAGCAAAGGAACCTGGACAGCCACAGGCGGGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGATCACTGTTGCAGACATaGAGCTGGATGGTTCTCAGT +
Preference number: 5 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGSLLQT*SWMVLS
Trigger: ACTGAGAACCATCCAGCTCAATGTCTGCAACAGTGA...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CCCTCCCCTCATCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGAACAACAGTGTGTGTCTaGTCCCATTTTCTCTGTCAC +
Preference number: 5 (lower is better)
Translates to: PSPHLSPSHQVPWRRPKGTTVCV*SHFLCH
Trigger: GTGACAGAGAAAATGGGACAAGACACACACTGTTGT...TCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGATGAGGGGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCTTTCTCCCTCCCACCAGGTTCCCTGGCGGAGACCGAAGGGACCTCTTCAGCTGCGTGTGTGACAGCGTaGATGACAGAGGAAGTATCT +
Preference number: 5 (lower is better)
Translates to: SFSLPPGSLAETEGTSSAACVTA*MTEEVS
Trigger: AGATACTTCCTCTGTCATCAACGCTGTCACACACGC...AGCTGAAGAGGTCCCTTCGGTCTCCGCCAGGGAACCTGGTGGGAGGGAGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS GCA 90 bp GAGAGACGGGCAGCTAGCATCGTGGCACCAAGTTGTAAGACGCTCTaGTTCCTTCTGGTGGCTCTGGTACACAGACTTCTAAAGCCACCA +
Preference number: 5 (lower is better)
Translates to: ERRAASIVAPSCKTL*FLLVALVHRLLKPP
Trigger: TGGTGGCTTTAGAAGTCTGTGTACCAGAGCCACCAGAAGGAAGCAGAGCGTCTTACAACTTGGTGCCACGATGCTAGCTGCCCGTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149039.2
CDS-3UTR CAA 90 bp GTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCGGCAGGCTGAATGTGGCCGCTATGAAGTaGCCAGGTTCCACCACACTG +
Preference number: 5 (lower is better)
Translates to: VHLCLYPEGLKAQTGRLNVAAMK*PGSTTL
Trigger: CAGTGTGGTGGAACCTGGCAACTTCATAGCGGCCAC...ATTCAGCCTGCCGGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TGTCTCAGTGCCCAGCCTTGGCACCACTGGTCTGTTTGCAGCACCAAGCATAGCTCACTGTTGCAGACATaGAGCTGGATGGTTCTCAGT +
Preference number: 5 (lower is better)
Translates to: CLSAQPWHHWSVCSTKHSSLLQT*SWMVLS
Trigger: ACTGAGAACCATCCAGCTCAATGTCTGCAACAGTGA...GCTATGCTTGGTGCTGCAAACAGACCAGTGGTGCCAAGGCTGGGCACTGAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCATCCACCACACTGACCTaGACACCCAGAGGGTGCATC +
Preference number: 5 (lower is better)
Translates to: STANQKVNSLPSSFSLPPSTTLT*TPRGCI
Trigger: GATGCACCCTCTGGGTGTCAAGGTCAGTGTGGTGGA...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCCTCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCATCATCCCACATCTTCTaGGCGATGGCCTGGATGCGC +
Preference number: 5 (lower is better)
Translates to: SSTANQKVNSLPSSFSLPSSHIF*AMAWMR
Trigger: GCGCATCCAGGCCATCGCCAAGAAGATGTGGGATGA...TGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CTAGACACTGCCAGGAGTGTAGGATCGGTTTCCAAGGGGGTCTTTGCTCTTCTCGCGTGTGTGACAGCGTaGATGACAGAGGAAGTATCT +
Preference number: 5 (lower is better)
Translates to: LDTARSVGSVSKGVFALLACVTA*MTEEVS
Trigger: AGATACTTCCTCTGTCATCAACGCTGTCACACACGC...GAGAAGAGCAAAGACCCCCTTGGAAACCGATCCTACACTCCTGGCAGTGTCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCCTCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCAGTGATCAGGATAGCTTaGCCACTAGCCGCATCTGCC +
Preference number: 5 (lower is better)
Translates to: SSTANQKVNSLPSSFSLPVIRIA*PLAASA
Trigger: GGCAGATGCGGCTAGTGGCAAAGCTATCCTGATCAC...TGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCAACCCCAGCATCACCTTaGTCCTTCATCAAACAGCCA +
Preference number: 5 (lower is better)
Translates to: STANQKVNSLPSSFSLPPTPASP*SFIKQP
Trigger: TGGCTGTTTGATGAAGGACAAAGGTGATGCTGGGGT...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp GGAGCTAGAACAGTGCACCTCTGTTTGTATCCAGAGGGGTTAAAAGCCCAAACCCTAGGTTCAATCCCCTaGTCCCATTTTCTCTGTCAC +
Preference number: 5 (lower is better)
Translates to: GARTVHLCLYPEGLKAQTLGSIP*SHFLCH
Trigger: GTGACAGAGAAAATGGGACAAGGGGATTGAACCTAG...GGTTTGGGCTTTTAACCCCTCTGGATACAAACAGAGGTGCACTGTTCTAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000232433.2
CDS-3UTR CAA 90 bp TCCTCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCATTTGAGTGCAGATGCTaGGCCAGTGAGAACCCAAAT +
Preference number: 5 (lower is better)
Translates to: SSTANQKVNSLPSSFSLPFECRC*ASENPN
Trigger: ATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAA...TGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp GTCTTTGCTCTTCTCTTTGTTCCCTGGCAGTGTCCAAGTAGGTGGTCAAACACTATACAAGGAAGCCTTTaGAGTGCAGATGCTTGGCCA +
Preference number: 5 (lower is better)
Translates to: VFALLFVPWQCPSRWSNTIQGSL*SADAWP
Trigger: TGGCCAAGCATCTGCACTCAAAAGGCTTCCTTGTAT...AGTGTTTGACCACCTACTTGGACACTGCCAGGGAACAAAGAGAAGAGCAAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCAACAGCTAATCAAAAGGTAAACTCCCTCCCCTCATCTTTCTCCCTCCCACCAACAACAGTGTGTGTCTaGTCCCATTTTCTCTGTCAC +
Preference number: 5 (lower is better)
Translates to: STANQKVNSLPSSFSLPPTTVCV*SHFLCH
Trigger: GTGACAGAGAAAATGGGACAAGACACACACTGTTGT...TGGTGGGAGGGAGAAAGATGAGGGGAGGGAGTTTACCTTTTGATTAGCTGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp AAGGTTAAAATAGGTCTTCCTAAGACAGTGGGTAATCCTCAACAGCTAATCAAAGTGATCAGGATAGCTTaGCCACTAGCCGCATCTGCC +
Preference number: 5 (lower is better)
Translates to: KVKIGLPKTVGNPQQLIKVIRIA*PLAASA
Trigger: GGCAGATGCGGCTAGTGGCAAAGCTATCCTGATCAC...TTTGATTAGCTGTTGAGGATTACCCACTGTCTTAGGAAGACCTATTTTAACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCGTGGCCGCTATGAAGTaGCCAGGTTCCACCACACTG +
Preference number: 5 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFVAAMK*PGSTTL
Trigger: CAGTGTGGTGGAACCTGGCAACTTCATAGCGGCCAC...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp TCTGTTCTGTTTACTCATGAGACTTACATAAGGATCAAATGGGATACAGATTTCTCATCCCACATCTTCTaGGCGATGGCCTGGATGCGC +
Preference number: 5 (lower is better)
Translates to: SVLFTHETYIRIKWDTDFSSHIF*AMAWMR
Trigger: GCGCATCCAGGCCATCGCCAAGAAGATGTGGGATGA...GAAATCTGTATCCCATTTGATCCTTATGTAAGTCTCATGAGTAAACAGAACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CATCTTCACCCAGACCTAACTCGAATCTTTAATGAGAATGTCAAGATCTCAGCTTTTGAGTGCAGATGCTaGGCCAGTGAGAACCCAAAT +
Preference number: 5 (lower is better)
Translates to: HLHPDLTRIFNENVKISAFECRC*ASENPN
Trigger: ATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAA...AGCTGAGATCTTGACATTCTCATTAAAGATTCGAGTTAGGTCTGGGTGAAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp CAGCATCTTCACCCAGACCTAACTCGAATCTTTAATGAGAATGTCAAGATCTCAACAACAGTGTGTGTCTaGTCCCATTTTCTCTGTCAC +
Preference number: 5 (lower is better)
Translates to: QHLHPDLTRIFNENVKISTTVCV*SHFLCH
Trigger: GTGACAGAGAAAATGGGACAAGACACACACTGTTGT...TGAGATCTTGACATTCTCATTAAAGATTCGAGTTAGGTCTGGGTGAAGATGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp AAGGTTAAAATAGGTCTTCCTAAGACAGTGGGTAATCCTCAACAGCTAATCAAAGCGTGTGTGACAGCGTaGATGACAGAGGAAGTATCT +
Preference number: 5 (lower is better)
Translates to: KVKIGLPKTVGNPQQLIKACVTA*MTEEVS
Trigger: AGATACTTCCTCTGTCATCAACGCTGTCACACACGC...TTTGATTAGCTGTTGAGGATTACCCACTGTCTTAGGAAGACCTATTTTAACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS-3UTR CAA 90 bp AAGGTTAAAATAGGTCTTCCTAAGACAGTGGGTAATCCTCAACAGCTAATCAAATTTGAGTGCAGATGCTaGGCCAGTGAGAACCCAAAT +
Preference number: 5 (lower is better)
Translates to: KVKIGLPKTVGNPQQLIKFECRC*ASENPN
Trigger: ATTTGGGTTCTCACTGGCCAAGCATCTGCACTCAAA...TTTGATTAGCTGTTGAGGATTACCCACTGTCTTAGGAAGACCTATTTTAACCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089759.9
ENSMUST00000115227.10
CDS CCA 72 bp GTGACAGGGGTCTGGAGAGACGGGCAGCTAGCATCGTaGCACCAAGTTGTAAGACGCTCTGCTTCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: VTGVWRDGQLAS*HQVVRRSASFW
Trigger: CCAGAAGGAAGCAGAGCGTCTTACAACTTGGTGCCACGATGCTAGCTGCCCGTCTCTCCAGACCCCTGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149039.2
CDS CCA 72 bp CACTTAGGGCTTTTCCTGGGAGCTGTGACAGGGGTCTaGAGAGACGGGCAGCTAGCATCGTGGCACCAAGTT +
Preference number: 6 (lower is better)
Translates to: HLGLFLGAVTGV*RDGQLASWHQV
Trigger: AACTTGGTGCCACGATGCTAGCTGCCCGTCTCTCCAGACCCCTGTCACAGCTCCCAGGAAAAGCCCTAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149039.2
CDS TCA 72 bp CTGCCTGACTGGCGTAGGTCCGACGGGTGTCAGGGCTaGAGGATGCTGGATAAAACAACAGTGTGTGTCTTG +
Preference number: 6 (lower is better)
Translates to: LPDWRRSDGCQG*RMLDKTTVCVL
Trigger: CAAGACACACACTGTTGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTCGGACCTACGCCAGTCAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
ENSMUST00000149039.2
CDS GCA 72 bp ACTGGCGTAGGTCCGACGGGTGTCAGGGCTGAAGGATaGTGGATAAAACAACAGTGTGTGTCTTGTCCCATT +
Preference number: 6 (lower is better)
Translates to: TGVGPTGVRAEG*WIKQQCVSCPI
Trigger: AATGGGACAAGACACACACTGTTGTTTTATCCAGCATCCTTCAGCCCTGACACCCGTCGGACCTACGCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000089759.9
ENSMUST00000115226.8
ENSMUST00000115227.10
ENSMUST00000149039.2
CDS GCA 72 bp GCAGCTAGCATCGTGGCACCAAGTTGTAAGACGCTCTaGTTCCTTCTGGTGGCTCTGGTACACAGACTTCTA +
Preference number: 6 (lower is better)
Translates to: AASIVAPSCKTL*FLLVALVHRLL
Trigger: TAGAAGTCTGTGTACCAGAGCCACCAGAAGGAAGCAGAGCGTCTTACAACTTGGTGCCACGATGCTAGCTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149039.2