Pregenerated sensors for BCS1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026172Ensembl transcript IDs: ENSMUST00000027358.11, ENSMUST00000113732.2, ENSMUST00000113733.10
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGGCCATGGCCCCATCATTTGTAGATGTAGATCTTGTAGGTACCTaGTATGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGG | + |
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Preference number: 1 (lower is better) Translates to: QAMAPSFVDVDLVGT*YGNSFYSQVQTQQW Trigger: CCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTACCTACAAGATCTACATCTACAAATGATGGGGCCATGGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| 3UTR CCA 90 bp | CATGGCCCCATCATTTGTAGATGTAGATCTTGTAGGTACCTGCTATaGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGA | + |
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Preference number: 1 (lower is better) Translates to: HGPIICRCRSCRYLL*QLILFSSTNTAMEG Trigger: TCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTACCTACAAGATCTACATCTACAAATGATGGGGCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| 3UTR TCA 72 bp | CAGGGCAACAATGTATCTTATTTGGGTGGCCTTTCATaGTTGCATGTATATTTTCCATTAACACTCACTCCC | + |
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Preference number: 3 (lower is better) Translates to: QGNNVSYLGGLS*LHVYFPLTLTP Trigger: GGGAGTGAGTGTTAATGGAAAATATACATGCAATCATGAAAGGCCACCCAAATAAGATACATTGTTGCCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| 3UTR CCA 72 bp | TGTGTGCCACAACACAGGGCAACAATGTATCTTATTTaGGTGGCCTTTCATGATTGCATGTATATTTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: CVPQHRATMYLI*VAFHDCMYIFH Trigger: ATGGAAAATATACATGCAATCATGAAAGGCCACCCAAATAAGATACATTGTTGCCCTGTGTTGTGGCACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| 3UTR GCA 72 bp | GCCCCATCATTTGTAGATGTAGATCTTGTAGGTACCTaGTATGGCAACTCATTTTATTCTCAAGTACAAACA | + |
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Preference number: 3 (lower is better) Translates to: APSFVDVDLVGT*YGNSFYSQVQT Trigger: TGTTTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTACCTACAAGATCTACATCTACAAATGATGGGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| 3UTR CCA 72 bp | ATCATTTGTAGATGTAGATCTTGTAGGTACCTGCTATaGCAACTCATTTTATTCTCAAGTACAAACACAGCA | + |
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Preference number: 3 (lower is better) Translates to: IICRCRSCRYLL*QLILFSSTNTA Trigger: TGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTACCTACAAGATCTACATCTACAAATGAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR TCA 90 bp | CTGATTAGTGTGACAGGTGTTTATGGAATTTTTGAGAGCAGATCATGGCCTGGTTCAACACTGAGGTGCTaGGTGCGGGTGCTGTGTCGG | + |
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Preference number: 4 (lower is better) Translates to: LISVTGVYGIFESRSWPGSTLRC*VRVLCR Trigger: CCGACACAGCACCCGCACTCAGCACCTCAGTGTTGA...ACCAGGCCATGATCTGCTCTCAAAAATTCCATAAACACCTGTCACACTAATCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | ACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCTCAACACTGAGGTGCTaGGTGCGGGTGCTGTGTCGG | + |
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Preference number: 4 (lower is better) Translates to: THFILKYKHSNGGRKGTSSTLRC*VRVLCR Trigger: CCGACACAGCACCCGCACTCAGCACCTCAGTGTTGA...GCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | GGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACCAGGGACTTCCAGTGTaGTCATGTAATGGCGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: GNSFYSQVQTQQWREERHQGLPV*SCNGAG Trigger: TCCGGCGCCATTACATGATCACACTGGAAGTCCCTG...GTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | TATGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGTTCCCTTCCTCCTGCTaGAGGGCCAGTGCTCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: YGNSFYSQVQTQQWREERFPSSC*RASARA Trigger: AGCTCGAGCACTGGCCCTGCAGCAGGAGGAAGGGAA...CCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | CACAGCAATGGAGGGAGGAAAGGCACAAGCCTGATTAGTGTGACAGGTGTTTATATTCCCGGATATCTTTaGCAATTCGGTCAGCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: HSNGGRKGTSLISVTGVYIPGYL*QFGQPD Trigger: GTCTGGCTGACCGAATTGTCAAAGATATCCGGGAAT...ATAAACACCTGTCACACTAATCAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | TCTTGTAGGTACCTGCTATGGCAACTCATTTTATTCTCAAGTACAAACACAGCATTCCCTTCCTCCTGCTaGAGGGCCAGTGCTCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: SCRYLLWQLILFSSTNTAFPSSC*RASARA Trigger: AGCTCGAGCACTGGCCCTGCAGCAGGAGGAAGGGAA...TGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTACCTACAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR GCA 90 bp | GCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACACGGTCAGCCAGACCCTaGTGTAGGACTACAGAATCC | + |
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Preference number: 4 (lower is better) Translates to: ATHFILKYKHSNGGRKGTRSARP*CRTTES Trigger: GGATTCTGTAGTCCTACAGCAGGGTCTGGCTGACCG...TGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | TACCTGCTATGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGACAGGGACTTCCAGTGTaGTCATGTAATGGCGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: YLLWQLILFSSTNTAMEGQGLPV*SCNGAG Trigger: TCCGGCGCCATTACATGATCACACTGGAAGTCCCTG...TCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR GCA 90 bp | ATGATTGCATGTATATTTTCCATTAACACTCACTCCCCTGTCCTCAGGCCATGGCTCAGCCAAAGAAGGTaGTTGCCCTGGATAGAACCT | + |
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Preference number: 4 (lower is better) Translates to: MIACIFSINTHSPVLRPWLSQRR*LPWIEP Trigger: AGGTTCTATCCAGGGCAAGCACCTTCTTTGGCTGAG...CCATGGCCTGAGGACAGGGGAGTGAGTGTTAATGGAAAATATACATGCAATCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR CCA 90 bp | AGCCTGATTAGTGTGACAGGTGTTTATGGAATTTTTGAGAGCAGATCATGGCCTAACCTCTGGAACATCTaGGTCAGCTGCCAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: SLISVTGVYGIFESRSWPNLWNI*VSCQCE Trigger: CTCACACTGGCAGCTGACCCAGATGTTCCAGAGGTT...AGGCCATGATCTGCTCTCAAAAATTCCATAAACACCTGTCACACTAATCAGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | GCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACATTCCCTGATACCAAATaGAGTGGTTTCCAGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: ATHFILKYKHSNGGRKGTFPDTK*SGFQGW Trigger: CCAGCCCTGGAAACCACTTCATTTGGTATCAGGGAA...TGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | TGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCATTCCCTGATACCAAATaGAGTGGTTTCCAGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: WQLILFSSTNTAMEGGKAFPDTK*SGFQGW Trigger: CCAGCCCTGGAAACCACTTCATTTGGTATCAGGGAA...TGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | CATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGATTCCCGGATATCTTTaGCAATTCGGTCAGCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: HFILKYKHSNGGRKGTSLIPGYL*QFGQPD Trigger: GTCTGGCTGACCGAATTGTCAAAGATATCCGGGAAT...CAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | CATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGCAAGGAGTCCCTGTTTaGAAGTCTACCATCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: HFILKYKHSNGGRKGTSLQGVPV*KSTICM Trigger: CATGCAGATGGTAGACTTGCAAACAGGGACTCCTTG...CAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | GATGTAGATCTTGTAGGTACCTGCTATGGCAACTCATTTTATTCTCAAGTACAAATGAGGTTTCAACACTaGGGTGCTGAGTGCGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: DVDLVGTCYGNSFYSQVQMRFQH*GAECGC Trigger: GCACCCGCACTCAGCACCTCAGTGTTGAAACCTCAT...TTGTACTTGAGAATAAAATGAGTTGCCATAGCAGGTACCTACAAGATCTACATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR TCA 90 bp | CATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGTTCATGCTGAAGGTATaGGGTTTCAACACTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: HFILKYKHSNGGRKGTSLFMLKV*GFNTEV Trigger: CACCTCAGTGTTGAAACCTCATACCTTCAGCATGAA...CAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | TTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGATTCAAGGAGTCCCTGTTTaGAAGTCTACCATCTGCATG | + |
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Preference number: 4 (lower is better) Translates to: FILKYKHSNGGRKGTSLIQGVPV*KSTICM Trigger: CATGCAGATGGTAGACTTGCAAACAGGGACTCCTTG...AATCAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | AACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCTCAGCCAAAGAAGGTaGTTGCCCTGGATAGAACCT | + |
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Preference number: 4 (lower is better) Translates to: NSFYSQVQTQQWREERHKLSQRR*LPWIEP Trigger: AGGTTCTATCCAGGGCAAGCACCTTCTTTGGCTGAG...CTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CCA 90 bp | CTGATTAGTGTGACAGGTGTTTATGGAATTTTTGAGAGCAGATCATGGCCTGGTAGAAGGTGCTTGCCCTaGATAGAACCTCTGGAACAT | + |
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Preference number: 4 (lower is better) Translates to: LISVTGVYGIFESRSWPGRRCLP*IEPLEH Trigger: ATGTTCCAGAGGTTCTATCCAGGGCAAGCACCTTCT...ACCAGGCCATGATCTGCTCTCAAAAATTCCATAAACACCTGTCACACTAATCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CCA 90 bp | AGCCTGATTAGTGTGACAGGTGTTTATGGAATTTTTGAGAGCAGATCATGGCCTAGAAGGTGCTTGCCCTaGATAGAACCTCTGGAACAT | + |
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Preference number: 4 (lower is better) Translates to: SLISVTGVYGIFESRSWPRRCLP*IEPLEH Trigger: ATGTTCCAGAGGTTCTATCCAGGGCAAGCACCTTCT...AGGCCATGATCTGCTCTCAAAAATTCCATAAACACCTGTCACACTAATCAGGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | CTGATTTATAGAACAAGTTCCAGGACAGCCAGGACTATACAGAGAAGTCTGTCTCTTCTTCCAGGATGTTaGAGAAAACCTTTCGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LIYRTSSRTARTIQRSLSLLPGC*RKPFGQ Trigger: CTGACCGAAAGGTTTTCTTCAACATCCTGGAAGAAG...AGACAGACTTCTCTGTATAGTCCTGGCTGTCCTGGAACTTGTTCTATAAATCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR TCA 90 bp | TTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGATTCTTCTTCCAGGATGTTaGAGAAAACCTTTCGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FILKYKHSNGGRKGTSLILLPGC*RKPFGQ Trigger: CTGACCGAAAGGTTTTCTTCAACATCCTGGAAGAAG...AATCAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | AACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCAGCCAAGTCTCTACTaGGAAAAGCAGCATCCACAT | + |
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Preference number: 4 (lower is better) Translates to: NSFYSQVQTQQWREERHKQPSLY*EKQHPH Trigger: ATGTGGATGCTGCTTTTCTCAGTAGAGACTTGGCTG...CTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | TATGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCAGCCAAGTCTCTACTaGGAAAAGCAGCATCCACAT | + |
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Preference number: 4 (lower is better) Translates to: YGNSFYSQVQTQQWREERQPSLY*EKQHPH Trigger: ATGTGGATGCTGCTTTTCTCAGTAGAGACTTGGCTG...CCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | ATGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCCATTTTTATACAGCATaGAGTAGCCTTGCACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: MATHFILKYKHSNGGRKGHFYTA*SSLAPG Trigger: CCCAGGTGCAAGGCTACTTCATGCTGTATAAAAATG...GCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | ACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCATTTTTATACAGCATaGAGTAGCCTTGCACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: THFILKYKHSNGGRKGTSHFYTA*SSLAPG Trigger: CCCAGGTGCAAGGCTACTTCATGCTGTATAAAAATG...GCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | AACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCACGTCTGTAGGGAATaGCTCTGTCAATGTACCACT | + |
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Preference number: 4 (lower is better) Translates to: NSFYSQVQTQQWREERHKHVCRE*LCQCTT Trigger: AGTGGTACATTGACAGAGGCATTCCCTACAGACGTG...CTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR GCA 90 bp | TATGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACGTCTGTAGGGAATaGCTCTGTCAATGTACCACT | + |
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Preference number: 4 (lower is better) Translates to: YGNSFYSQVQTQQWREERHVCRE*LCQCTT Trigger: AGTGGTACATTGACAGAGGCATTCCCTACAGACGTG...CCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | CAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAATTCATGCTGAAGGTATaGGGTTTCAACACTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: QLILFSSTNTAMEGGKAQFMLKV*GFNTEV Trigger: CACCTCAGTGTTGAAACCTCATACCTTCAGCATGAA...TTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR TCA 90 bp | CTGATTAGTGTGACAGGTGTTTATGGAATTTTTGAGAGCAGATCATGGCCTGGTCGGATCCATTTTCCCTaGTACCAAATGAAGTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: LISVTGVYGIFESRSWPGRIHFP*YQMKWF Trigger: AAACCACTTCATTTGGTATCAGGGAAAATGGATCCG...ACCAGGCCATGATCTGCTCTCAAAAATTCCATAAACACCTGTCACACTAATCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CCA 90 bp | GCAACAATGTATCTTATTTGGGTGGCCTTTCATGATTGCATGTATATTTTCCATAACCTCTGGAACATCTaGGTCAGCTGCCAGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: ATMYLIWVAFHDCMYIFHNLWNI*VSCQCE Trigger: CTCACACTGGCAGCTGACCCAGATGTTCCAGAGGTT...ATGGAAAATATACATGCAATCATGAAAGGCCACCCAAATAAGATACATTGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR TCA 90 bp | TTATTTGGGTGGCCTTTCATGATTGCATGTATATTTTCCATTAACACTCACTCCCGGATCCATTTTCCCTaGTACCAAATGAAGTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: LFGWPFMIACIFSINTHSRIHFP*YQMKWF Trigger: AAACCACTTCATTTGGTATCAGGGAAAATGGATCCG...GGAGTGAGTGTTAATGGAAAATATACATGCAATCATGAAAGGCCACCCAAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS TCA 90 bp | TTGCCCTGGATAGAACCTCTGGAACATCTGGGTCAGCTGCCAGTGTaGGCAGTAGCCCACATACTCCTTCAGATCTACTCGCCCGGGACG | + |
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Preference number: 5 (lower is better) Translates to: LPWIEPLEHLGQLPV*AVAHILLQIYSPGT Trigger: CGTCCCGGGCGAGTAGATCTGAAGGAGTATGTGGGCTACTGCTCACACTGGCAGCTGACCCAGATGTTCCAGAGGTTCTATCCAGGGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS-3UTR CAA 90 bp | GCAGGAGGGGACTGTGTGCCACAACACAGGGCAACAATGTATCTTATTTGGGTGCCAAGGAGTCCCTGTTaGCAAGTCTACCATCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: AGGDCVPQHRATMYLIWVPRSPC*QVYHLH Trigger: ATGCAGATGGTAGACTTGCAAACAGGGACTCCTTGG...CACCCAAATAAGATACATTGTTGCCCTGTGTTGTGGCACACAGTCCCCTCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS GCA 90 bp | TGTAGCTTTAAGGACATGTTCAGCAAAGTTCTCAGCCAAAGAAGGTaGTTGCCCTGGATAGAACCTCTGGAACATCTGGGTCAGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: CSFKDMFSKVLSQRR*LPWIEPLEHLGQLP Trigger: TGGCAGCTGACCCAGATGTTCCAGAGGTTCTATCCAGGGCAAGCACCTTCTTTGGCTGAGAACTTTGCTGAACATGTCCTTAAAGCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS GCA 90 bp | AGGATCCAGCCTGTCAATGTAGTTGGTGGTCATGAACACAATTCGTaGTTCAGTGGAGGCTACACCATCCAAAGCATTAAGCAGTCCACT | + |
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Preference number: 5 (lower is better) Translates to: RIQPVNVVGGHEHNS*FSGGYTIQSIKQST Trigger: AGTGGACTGCTTAATGCTTTGGATGGTGTAGCCTCCACTGAAGCACGAATTGTGTTCATGACCACCAACTACATTGACAGGCTGGATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS-3UTR CAA 90 bp | ATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGATTAGTACACTCAGTAGATGGTaGAGCCGGTCATCTGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: ILKYKHSNGGRKGTSLISTLSRW*SRSSER Trigger: CCTCTCAGATGACCGGCTCAACCATCTACTGAGTGT...ACTAATCAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CAA 90 bp | ATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCTGATTAGTCAGCATGAAGTAGCCTaGCACCTGGGCAGGACTAAT | + |
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Preference number: 5 (lower is better) Translates to: ILKYKHSNGGRKGTSLISQHEVA*HLGRTN Trigger: ATTAGTCCTGCCCAGGTGCAAGGCTACTTCATGCTG...ACTAATCAGGCTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CAA 90 bp | CAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAACAGCATGAAGTAGCCTaGCACCTGGGCAGGACTAAT | + |
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Preference number: 5 (lower is better) Translates to: QLILFSSTNTAMEGGKAQQHEVA*HLGRTN Trigger: ATTAGTCCTGCCCAGGTGCAAGGCTACTTCATGCTG...TTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CAA 90 bp | TGGCAACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCAGGGATAAATTCAAACTaGGTGGAGATCCGGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: WQLILFSSTNTAMEGGKAGINSN*VEIRPL Trigger: AAGTGGCCGGATCTCCACCAAGTTTGAATTTATCCC...TGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CAA 90 bp | AACTCATTTTATTCTCAAGTACAAACACAGCAATGGAGGGAGGAAAGGCACAAGCCAAGGAGTCCCTGTTaGCAAGTCTACCATCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: NSFYSQVQTQQWREERHKPRSPC*QVYHLH Trigger: ATGCAGATGGTAGACTTGCAAACAGGGACTCCTTGG...CTTGTGCCTTTCCTCCCTCCATTGCTGTGTTTGTACTTGAGAATAAAATGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 |
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| CDS-3UTR CAA 90 bp | AGGGCAACAATGTATCTTATTTGGGTGGCCTTTCATGATTGCATGTATATTTTCGGGATAAATTCAAACTaGGTGGAGATCCGGCCACTT | + |
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Preference number: 5 (lower is better) Translates to: RATMYLIWVAFHDCMYIFGINSN*VEIRPL Trigger: AAGTGGCCGGATCTCCACCAAGTTTGAATTTATCCC...GAAAATATACATGCAATCATGAAAGGCCACCCAAATAAGATACATTGTTGCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS-3UTR CAA 90 bp | AGGGCAACAATGTATCTTATTTGGGTGGCCTTTCATGATTGCATGTATATTTTCAATTCCCGGATATCTTaGACAATTCGGTCAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RATMYLIWVAFHDCMYIFNSRIS*TIRSAR Trigger: TCTGGCTGACCGAATTGTCAAAGATATCCGGGAATT...GAAAATATACATGCAATCATGAAAGGCCACCCAAATAAGATACATTGTTGCCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027358.11 |
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| CDS CAA 72 bp | TGCTGCAGGGCCAGTGCTCGAGCTTCTTCCAGGATGTaGAAGAAAACCTTTCGGTCAGTGCCCAGGGCCGTG | + |
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Preference number: 6 (lower is better) Translates to: CCRASARASSRM*KKTFRSVPRAV Trigger: CACGGCCCTGGGCACTGACCGAAAGGTTTTCTTCAACATCCTGGAAGAAGCTCGAGCACTGGCCCTGCAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 90 bp | TCCAGGAGCACCAAGCTCTGCTGTGGTGCTACACTCAGTAGATGGTaGAGCCGGTCATCTGAGAGGCTAGAGTCTGTGAGGCTGAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SRSTKLCCGATLSRW*SRSSERLESVRLSR Trigger: CCTGCTCAGCCTCACAGACTCTAGCCTCTCAGATGACCGGCTCAACCATCTACTGAGTGTAGCACCACAGCAGAGCTTGGTGCTCCTGGA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS TCA 72 bp | CCACATACTCCTTCAGATCTACTCGCCCGGGACGTATaGGGGCAGGATCCAGCCTGTCAATGTAGTTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: PHTPSDLLARDV*GQDPACQCSWW Trigger: CCACCAACTACATTGACAGGCTGGATCCTGCCCTCATACGTCCCGGGCGAGTAGATCTGAAGGAGTATGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS GCA 72 bp | TCCCGGATATCTTTGACAATTCGGTCAGCCAGACCCTaGTGTAGGACTACAGAATCCAGTGGCCGACGTCGG | + |
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Preference number: 6 (lower is better) Translates to: SRISLTIRSARP*CRTTESSGRRR Trigger: CCGACGTCGGCCACTGGATTCTGTAGTCCTACAGCAGGGTCTGGCTGACCGAATTGTCAAAGATATCCGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 90 bp | AGTGCCCAGGGCCGTGAAGGTGACAGATTCCCAAGGAGTCCCTGTTaGCAAGTCTACCATCTGCATGTCTCGGTTTCGTTCTACCCGGAT | + |
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Preference number: 6 (lower is better) Translates to: SAQGREGDRFPRSPC*QVYHLHVSVSFYPD Trigger: ATCCGGGTAGAACGAAACCGAGACATGCAGATGGTAGACTTGCAAACAGGGACTCCTTGGGAATCTGTCACCTTCACGGCCCTGGGCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS TCA 72 bp | AGGCATAGCTTCTGTCTCTGGCAGGGACTTCCAGTGTaGTCATGTAATGGCGCCGGAATGCCACTAGACCCA | + |
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Preference number: 6 (lower is better) Translates to: RHSFCLWQGLPV*SCNGAGMPLDP Trigger: TGGGTCTAGTGGCATTCCGGCGCCATTACATGATCACACTGGAAGTCCCTGCCAGAGACAGAAGCTATGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS TCA 72 bp | CTTGGTGGAGATCCGGCCACTTTCATGCTGAAGGTATaGGGTTTCAACACTGAGGTGCTGAGTGCGGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: LGGDPATFMLKV*GFNTEVLSAGA Trigger: AGCACCCGCACTCAGCACCTCAGTGTTGAAACCTCATACCTTCAGCATGAAAGTGGCCGGATCTCCACCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 72 bp | ACCAAGCTCTGCTGTGGTGCTACACTCAGTAGATGGTaGAGCCGGTCATCTGAGAGGCTAGAGTCTGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: TKLCCGATLSRW*SRSSERLESVR Trigger: CCTCACAGACTCTAGCCTCTCAGATGACCGGCTCAACCATCTACTGAGTGTAGCACCACAGCAGAGCTTGGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 72 bp | GGCCGTGAAGGTGACAGATTCCCAAGGAGTCCCTGTTaGCAAGTCTACCATCTGCATGTCTCGGTTTCGTTC | + |
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Preference number: 6 (lower is better) Translates to: GREGDRFPRSPC*QVYHLHVSVSF Trigger: GAACGAAACCGAGACATGCAGATGGTAGACTTGCAAACAGGGACTCCTTGGGAATCTGTCACCTTCACGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS TCA 72 bp | GGGCAGGATCCAGCCTGTCAATGTAGTTGGTGGTCATaGACACAATTCGTGCTTCAGTGGAGGCTACACCAT | + |
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Preference number: 6 (lower is better) Translates to: GQDPACQCSWWS*TQFVLQWRLHH Trigger: ATGGTGTAGCCTCCACTGAAGCACGAATTGTGTTCATGACCACCAACTACATTGACAGGCTGGATCCTGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS TCA 72 bp | ATAGAACCTCTGGAACATCTGGGTCAGCTGCCAGTGTaGGCAGTAGCCCACATACTCCTTCAGATCTACTCG | + |
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Preference number: 6 (lower is better) Translates to: IEPLEHLGQLPV*AVAHILLQIYS Trigger: CGAGTAGATCTGAAGGAGTATGTGGGCTACTGCTCACACTGGCAGCTGACCCAGATGTTCCAGAGGTTCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 90 bp | AGCTTTAAGGACATGTTCAGCAAAGTTCTCAGCCAAAGAAGGTGCTaGCCCTGGATAGAACCTCTGGAACATCTGGGTCAGCTGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SFKDMFSKVLSQRRC*PWIEPLEHLGQLPV Trigger: CACTGGCAGCTGACCCAGATGTTCCAGAGGTTCTATCCAGGGCAAGCACCTTCTTTGGCTGAGAACTTTGCTGAACATGTCCTTAAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CCA 72 bp | TTAAGCAGTCCACTGAAGGTGAGGCGGCCTAGTCCTTaGTACTTTATAGGGTTCTCCACAGCCAAGTCTCTA | + |
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Preference number: 6 (lower is better) Translates to: LSSPLKVRRPSP*YFIGFSTAKSL Trigger: TAGAGACTTGGCTGTGGAGAACCCTATAAAGTACCAAGGACTAGGCCGCCTCACCTTCAGTGGACTGCTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS GCA 72 bp | GATTCCCAAGGAGTCCCTGTTTGCAAGTCTACCATCTaGATGTCTCGGTTTCGTTCTACCCGGATCCATTTT | + |
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Preference number: 6 (lower is better) Translates to: DSQGVPVCKSTI*MSRFRSTRIHF Trigger: AAAATGGATCCGGGTAGAACGAAACCGAGACATGCAGATGGTAGACTTGCAAACAGGGACTCCTTGGGAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS GCA 72 bp | AAGGACATGTTCAGCAAAGTTCTCAGCCAAAGAAGGTaGTTGCCCTGGATAGAACCTCTGGAACATCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: KDMFSKVLSQRR*LPWIEPLEHLG Trigger: ACCCAGATGTTCCAGAGGTTCTATCCAGGGCAAGCACCTTCTTTGGCTGAGAACTTTGCTGAACATGTCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 90 bp | CTGTCAATGTACCACTTGGGGTTATCAATAAATTCCCGGATATCTTaGACAATTCGGTCAGCCAGACCCTGCTGTAGGACTACAGAATCC | + |
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Preference number: 6 (lower is better) Translates to: LSMYHLGLSINSRIS*TIRSARPCCRTTES Trigger: GGATTCTGTAGTCCTACAGCAGGGTCTGGCTGACCGAATTGTCAAAGATATCCGGGAATTTATTGATAACCCCAAGTGGTACATTGACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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| CDS CAA 72 bp | TACCACTTGGGGTTATCAATAAATTCCCGGATATCTTaGACAATTCGGTCAGCCAGACCCTGCTGTAGGACT | + |
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Preference number: 6 (lower is better) Translates to: YHLGLSINSRIS*TIRSARPCCRT Trigger: AGTCCTACAGCAGGGTCTGGCTGACCGAATTGTCAAAGATATCCGGGAATTTATTGATAACCCCAAGTGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027358.11 ENSMUST00000113732.2 ENSMUST00000113733.10 |
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