RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for BCO2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032066

Ensembl transcript IDs: ENSMUST00000119103.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTGAGTCTCCTCCGCCGTaGTCAGCAGTGGGGCAATGC +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPESPPP*SAVGQC
Trigger: GCATTGCCCCACTGCTGACCACGGCGGAGGAGACTC...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTCAGTGGGGCAATGCATaGCAGGCTCTGCTTCGGTCC +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPQWGNA*QALLRS
Trigger: GGACCGAAGCAGAGCCTGCCATGCATTGCCCCACTG...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTGTCGTAATGAGGATGTaGAGTGGCTCCATTCACAGC +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPVVMRM*SGSIHS
Trigger: GCTGTGAATGGAGCCACTGCACATCCTCATTACGAC...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR TCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTCAGCGTGCCAAATTCTaGGATCACAATTCTACCTCC +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPQRAKF*DHNSTS
Trigger: GGAGGTAGAATTGTGATCTCAGAATTTGGCACGCTG...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTTCAGCAGTGGGGCAATaGATGGCAGGCTCTGCTTCG +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFSAVGQ*MAGSAS
Trigger: CGAAGCAGAGCCTGCCATGCATTGCCCCACTGCTGA...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTTCTTGTATGTCACTGTaGCCCTCTCCATTCGGAACT +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPSCMSL*PSPFGT
Trigger: AGTTCCGAATGGAGAGGGGCACAGTGACATACAAGA...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGTTCAAAGATGCTCTTaGATGGGTCAGGAAGGGCCA +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILVQRCS*MGQEGP
Trigger: TGGCCCTTCCTGACCCATGCAAGAGCATCTTTGAAC...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTATCTCAGTGGAGGCAATaGAACATAGCACCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILSQWRQ*NIAPVL
Trigger: GAGCACAGGTGCTATGTTCCATTGCCTCCACTGAGA...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTCTTCTCCCATCATCCTaGCAGCACAGATCAATCACA +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPLLPSS*QHRSIT
Trigger: TGTGATTGATCTGTGCTGCCAGGATGATGGGAGAAG...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAAGACAAGGAGGAAGTTaGTTTCACTCTGGTTGGGAG +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILRQGGS*FHSGWE
Trigger: CTCCCAACCAGAGTGAAAGCAACTTCCTCCTTGTCT...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp TTGAGTGAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGTACCTCCAGCACTGTTaGCCTTATATGTGTCACTCT +
Preference number: 4 (lower is better)
Translates to: LSEIHHFLFSSECAHRSPYLQHC*PYMCHS
Trigger: AGAGTGACACATATAAGGCCAACAGTGCTGGAGGTA...CGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTCACTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTAACCGCGTGTTATACTaGGGCTCCCAGCTTATCCCA +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFNRVLY*GSQLIP
Trigger: TGGGATAAGCTGGGAGCCCCAGTATAACACGCGGTT...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTATCTTCCAGGTCTTCGTaGTGTAGATTTTCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILSSRSS*CRFSGE
Trigger: CTCTCCTGAAAATCTACACCACGAAGACCTGGAAGA...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTTTCCTCATCTGCTCCTaGCACCGGAACAAAAACGGG +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFFLICS*HRNKNG
Trigger: CCCGTTTTTGTTCCGGTGCCAGGAGCAGATGAGGAA...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAAAGTTGCTTTCACTCTaGTTGGGAGTGATCACCACA +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILKLLSL*LGVITT
Trigger: TGTGGTGATCACTCCCAACCAGAGTGAAAGCAACTT...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp TTGAGTGAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGCACTCTGTAGAAACTTaGTCTTGTATGTCACTGTGC +
Preference number: 4 (lower is better)
Translates to: LSEIHHFLFSSECAHRSPHSVET*SCMSLC
Trigger: GCACAGTGACATACAAGAGCAAGTTTCTACAGAGTG...CGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTCACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTCAGGAAGGGCCAGCGTaGCAAATTCTGAGATCACAA +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFQEGPA*QILRSQ
Trigger: TTGTGATCTCAGAATTTGGCACGCTGGCCCTTCCTG...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR GCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTACTGTCTTCCTCATCTaGTCCTGGCACCGGAACAAA +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFTVFLI*SWHRNK
Trigger: TTTGTTCCGGTGCCAGGAGCAGATGAGGAAGACAGT...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTGTATGCTGTCCCATCTaGGTCGTAATGAGGATGTGC +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFVCCPI*VVMRMC
Trigger: GCACATCCTCATTACGACCCAGATGGGACAGCATAC...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCTTCATTTTCTCAGTaGAGGCAATGGAACATAGCA +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILASFSQ*RQWNIA
Trigger: TGCTATGTTCCATTGCCTCCACTGAGAAAATGAAGC...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAATCACAATACAGCCCTaGTCCTCAAAGGCATTGATT +
Preference number: 4 (lower is better)
Translates to: EIHHFLFSSECAHRSPILITIQP*SSKALI
Trigger: AATCAATGCCTTTGAGGACCAGGGCTGTATTGTGAT...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTCCTGTTTCACAGCGCTaGCTGAAGAATAGGACAGTG +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFPVSQR*LKNRTV
Trigger: CACTGTCCTATTCTTCAGCCAGCGCTGTGAAACAGG...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR TCA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTATTCCATCAAACCAATaGTTGTATCTATCCTTCCCA +
Preference number: 4 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPIPSNQ*LYLSFP
Trigger: TGGGAAGGATAGATACAATCATTGGTTTGATGGAAT...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR TCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTCTCCATTCACAGCAATaGATTTGCTCCAGTCCACCT +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFLHSQQ*ICSSPP
Trigger: AGGTGGACTGGAGCAAATTCATTGCTGTGAATGGAG...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR TCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTTGTTTATCCACCACATaGAACCGCGTGTTATACTGG +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFCLSTT*NRVLYW
Trigger: CCAGTATAACACGCGGTTTCATGTGGTGGATAAACA...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR TCA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTAGGTGGCTCAAACCTTaGCATGAAACGTTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFRWLKP*HETFKD
Trigger: ATCTTTGAACGTTTCATGTCAAGGTTTGAGCCACCT...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 90 bp GTCCTCGGACCCGAGCAGAGACAGCACTCAGAGTCTCCTCCGCCGTaGTCAGCAGTGGGGCAATGCATGGCAGGCTCTGCTTCGGTCCCA +
Preference number: 5 (lower is better)
Translates to: VLGPEQRQHSESPPP*SAVGQCMAGSASVP
Trigger: TGGGACCGAAGCAGAGCCTGCCATGCATTGCCCCACTGCTGACCACGGCGGAGGAGACTCTGAGTGCTGTCTCTGCTCGGGTCCGAGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 90 bp ACCCGTAAGGCATCTGCACGGGTACTTCCGCTCGCCCCAGCTCTGTaGAGCTCTTGGCATCCAAGACAAGGAGGAAGTTGCTTTCACTCT +
Preference number: 5 (lower is better)
Translates to: TRKASARVLPLAPAL*SSWHPRQGGSCFHS
Trigger: AGAGTGAAAGCAACTTCCTCCTTGTCTTGGATGCCAAGAGCTTCACAGAGCTGGGGCGAGCGGAAGTACCCGTGCAGATGCCTTACGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 90 bp ACCTCTTGGCCCATAGCTGTTCCCCATGTTGTATGCTGTCCCATCTaGGTCGTAATGAGGATGTGCAGTGGCTCCATTCACAGCAATGAA +
Preference number: 5 (lower is better)
Translates to: TSWPIAVPHVVCCPI*VVMRMCSGSIHSNE
Trigger: TTCATTGCTGTGAATGGAGCCACTGCACATCCTCATTACGACCCAGATGGGACAGCATACAACATGGGGAACAGCTATGGGCCAAGAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTACGTTCAAAGATGCTCTaGCATGGGTCAGGAAGGGCC +
Preference number: 5 (lower is better)
Translates to: EIHHFLFSSECAHRSPILRSKML*HGSGRA
Trigger: GGCCCTTCCTGACCCATGCAAGAGCATCTTTGAACG...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 90 bp GTTCCCCATGTTGTATGCTGTCCCATCTGGGTCGTAATGAGGATGTaGAGTGGCTCCATTCACAGCAATGAATTTGCTCCAGTCCACCTT +
Preference number: 5 (lower is better)
Translates to: VPHVVCCPIWVVMRM*SGSIHSNEFAPVHL
Trigger: AAGGTGGACTGGAGCAAATTCATTGCTGTGAATGGAGCCACTGCACATCCTCATTACGACCCAGATGGGACAGCATACAACATGGGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTCTACCTCCAGCACTGTaGGCCTTATATGTGTCACTC +
Preference number: 5 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPLPPAL*ALYVSL
Trigger: GAGTGACACATATAAGGCCAACAGTGCTGGAGGTAG...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAAGCTCTGTGAAGCTCTaGGCATCCAAGACAAGGAGG +
Preference number: 5 (lower is better)
Translates to: EIHHFLFSSECAHRSPILSSVKL*ASKTRR
Trigger: CCTCCTTGTCTTGGATGCCAAGAGCTTCACAGAGCT...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 90 bp AAAGATGCTCTTGCATGGGTCAGGAAGGGCCAGCGTGCCAAATTCTaGGATCACAATTCTACCTCCAGCACTGTTGGCCTTATATGTGTC +
Preference number: 5 (lower is better)
Translates to: KDALAWVRKGQRAKF*DHNSTSSTVGLICV
Trigger: GACACATATAAGGCCAACAGTGCTGGAGGTAGAATTGTGATCTCAGAATTTGGCACGCTGGCCCTTCCTGACCCATGCAAGAGCATCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 90 bp ATTATAGCAAGAACCTCTTGGCCCATAGCTGTTCCCCATGTTGTATaGTGTCCCATCTGGGTCGTAATGAGGATGTGCAGTGGCTCCATT +
Preference number: 5 (lower is better)
Translates to: IIARTSWPIAVPHVV*CPIWVVMRMCSGSI
Trigger: AATGGAGCCACTGCACATCCTCATTACGACCCAGATGGGACAGCATACAACATGGGGAACAGCTATGGGCCAAGAGGTTCTTGCTATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTTGTAGAAACTTGCTCTaGTATGTCACTGTGCCCCTC +
Preference number: 5 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPCRNLL*YVTVPL
Trigger: GAGGGGCACAGTGACATACAAGAGCAAGTTTCTACA...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 90 bp CATCTGGGTCGTAATGAGGATGTGCAGTGGCTCCATTCACAGCAATaGATTTGCTCCAGTCCACCTTTTCTGTCCTTTCCAGCATCTCAA +
Preference number: 5 (lower is better)
Translates to: HLGRNEDVQWLHSQQ*ICSSPPFLSFPASQ
Trigger: TTGAGATGCTGGAAAGGACAGAAAAGGTGGACTGGAGCAAATTCATTGCTGTGAATGGAGCCACTGCACATCCTCATTACGACCCAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 90 bp TACCTCCAGCACTGTTGGCCTTATATGTGTCACTCTGTAGAAACTTaGTCTTGTATGTCACTGTGCCCCTCTCCATTCGGAACTGGTGAA +
Preference number: 5 (lower is better)
Translates to: YLQHCWPYMCHSVET*SCMSLCPSPFGTGE
Trigger: TTCACCAGTTCCGAATGGAGAGGGGCACAGTGACATACAAGAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTGCTGGAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp CCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAGCCTTCCTTTGTACTGCACAAAGTaGACGTTGGTGTTGTCAGTC +
Preference number: 5 (lower is better)
Translates to: PFSLFLRVCSSKPDPSLPLYCTK*TLVLSV
Trigger: GACTGACAACACCAACGTCAACTTTGTGCAGTACAA...AGGAAGGCTAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTAAAGACAAGGAGGAAGTaGCTTTCACTCTGGTTGGGA +
Preference number: 5 (lower is better)
Translates to: EIHHFLFSSECAHRSPILKTRRK*LSLWLG
Trigger: TCCCAACCAGAGTGAAAGCAACTTCCTCCTTGTCTT...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 90 bp AAAGTTGACGTTGGTGTTGTCAGTCATAGTAGGTGGCTCAAACCTTaGCATGAAACGTTCAAAGATGCTCTTGCATGGGTCAGGAAGGGC +
Preference number: 5 (lower is better)
Translates to: KVDVGVVSHSRWLKP*HETFKDALAWVRKG
Trigger: GCCCTTCCTGACCCATGCAAGAGCATCTTTGAACGTTTCATGTCAAGGTTTGAGCCACCTACTATGACTGACAACACCAACGTCAACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 90 bp TTGTCATTCCAAAGCTATGGTAGTAAGAAGGCTTCATTTTCTCAGTaGAGGCAATGGAACATAGCACCTGTGCTCCGTGAATCGTCTCCC +
Preference number: 5 (lower is better)
Translates to: LSFQSYGSKKASFSQ*RQWNIAPVLRESSP
Trigger: GGGAGACGATTCACGGAGCACAGGTGCTATGTTCCATTGCCTCCACTGAGAAAATGAAGCCTTCTTACTACCATAGCTTTGGAATGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTATCACTCTGTAGAAACTaGCTCTTGTATGTCACTGTG +
Preference number: 5 (lower is better)
Translates to: EIHHFLFSSECAHRSPILSLCRN*LLYVTV
Trigger: CACAGTGACATACAAGAGCAAGTTTCTACAGAGTGA...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTATTCACAGCAATGAATTaGCTCCAGTCCACCTTTTCT +
Preference number: 5 (lower is better)
Translates to: EIHHFLFSSECAHRSPILFTAMN*LQSTFS
Trigger: AGAAAAGGTGGACTGGAGCAAATTCATTGCTGTGAA...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp AGGGTCAGGTCCAAACTACAACAGCTTTTGAGTGAGATCCACCATTTTCTCTTTTTGCTTTCACTCTGGTaGGGAGTGATCACCACAGAG +
Preference number: 5 (lower is better)
Translates to: RVRSKLQQLLSEIHHFLFLLSLW*GVITTE
Trigger: CTCTGTGGTGATCACTCCCAACCAGAGTGAAAGCAA...AAAGAGAAAATGGTGGATCTCACTCAAAAGCTGTTGTAGTTTGGACCTGACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS-3UTR CAA 90 bp GAGATCCACCATTTTCTCTTTTCCTCAGAGTGTGCTCATCGAAGCCCGATCCTACTCAAAGGCATTGATTaGATGATAGGTAAGAAAAGG +
Preference number: 5 (lower is better)
Translates to: EIHHFLFSSECAHRSPILLKGID*MIGKKR
Trigger: CCTTTTCTTACCTATCATCAAATCAATGCCTTTGAG...TAGGATCGGGCTTCGATGAGCACACTCTGAGGAAAAGAGAAAATGGTGGATCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 72 bp CCCGAGCAGAGACAGCACTCAGAGTCTCCTCCGCCGTaGTCAGCAGTGGGGCAATGCATGGCAGGCTCTGCT +
Preference number: 6 (lower is better)
Translates to: PEQRQHSESPPP*SAVGQCMAGSA
Trigger: AGCAGAGCCTGCCATGCATTGCCCCACTGCTGACCACGGCGGAGGAGACTCTGAGTGCTGTCTCTGCTCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 72 bp GACAGCACTCAGAGTCTCCTCCGCCGTGGTCAGCAGTaGGGCAATGCATGGCAGGCTCTGCTTCGGTCCCAA +
Preference number: 6 (lower is better)
Translates to: DSTQSLLRRGQQ*GNAWQALLRSQ
Trigger: TTGGGACCGAAGCAGAGCCTGCCATGCATTGCCCCACTGCTGACCACGGCGGAGGAGACTCTGAGTGCTGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 72 bp GCATCTGCACGGGTACTTCCGCTCGCCCCAGCTCTGTaGAGCTCTTGGCATCCAAGACAAGGAGGAAGTTGC +
Preference number: 6 (lower is better)
Translates to: ASARVLPLAPAL*SSWHPRQGGSC
Trigger: GCAACTTCCTCCTTGTCTTGGATGCCAAGAGCTTCACAGAGCTGGGGCGAGCGGAAGTACCCGTGCAGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 90 bp GGCATCTGCACGGGTACTTCCGCTCGCCCCAGCTCTGTGAAGCTCTaGGCATCCAAGACAAGGAGGAAGTTGCTTTCACTCTGGTTGGGA +
Preference number: 6 (lower is better)
Translates to: GICTGTSARPSSVKL*ASKTRRKLLSLWLG
Trigger: TCCCAACCAGAGTGAAAGCAACTTCCTCCTTGTCTTGGATGCCAAGAGCTTCACAGAGCTGGGGCGAGCGGAAGTACCCGTGCAGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 72 bp CACCACAGAGAGTATAACCCCACTGTCTTCCTCATCTaGTCCTGGCACCGGAACAAAAACGGGCTCCGAGGG +
Preference number: 6 (lower is better)
Translates to: HHREYNPTVFLI*SWHRNKNGLRG
Trigger: CCCTCGGAGCCCGTTTTTGTTCCGGTGCCAGGAGCAGATGAGGAAGACAGTGGGGTTATACTCTCTGTGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 72 bp ACGGGTACTTCCGCTCGCCCCAGCTCTGTGAAGCTCTaGGCATCCAAGACAAGGAGGAAGTTGCTTTCACTC +
Preference number: 6 (lower is better)
Translates to: TGTSARPSSVKL*ASKTRRKLLSL
Trigger: GAGTGAAAGCAACTTCCTCCTTGTCTTGGATGCCAAGAGCTTCACAGAGCTGGGGCGAGCGGAAGTACCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 72 bp CTTGCATGGGTCAGGAAGGGCCAGCGTGCCAAATTCTaGGATCACAATTCTACCTCCAGCACTGTTGGCCTT +
Preference number: 6 (lower is better)
Translates to: LAWVRKGQRAKF*DHNSTSSTVGL
Trigger: AAGGCCAACAGTGCTGGAGGTAGAATTGTGATCTCAGAATTTGGCACGCTGGCCCTTCCTGACCCATGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 72 bp CCTGGGAGAAGCTGTCCAGTGTGTTTATCCACCACATaGAACCGCGTGTTATACTGGGGCTCCCAGCTTATC +
Preference number: 6 (lower is better)
Translates to: PGRSCPVCLSTT*NRVLYWGSQLI
Trigger: GATAAGCTGGGAGCCCCAGTATAACACGCGGTTTCATGTGGTGGATAAACACACTGGACAGCTTCTCCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 72 bp CCCATAGCTGTTCCCCATGTTGTATGCTGTCCCATCTaGGTCGTAATGAGGATGTGCAGTGGCTCCATTCAC +
Preference number: 6 (lower is better)
Translates to: PIAVPHVVCCPI*VVMRMCSGSIH
Trigger: GTGAATGGAGCCACTGCACATCCTCATTACGACCCAGATGGGACAGCATACAACATGGGGAACAGCTATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 72 bp CAAAGATGCTCTTGCATGGGTCAGGAAGGGCCAGCGTaGCAAATTCTGAGATCACAATTCTACCTCCAGCAC +
Preference number: 6 (lower is better)
Translates to: QRCSCMGQEGPA*QILRSQFYLQH
Trigger: GTGCTGGAGGTAGAATTGTGATCTCAGAATTTGGCACGCTGGCCCTTCCTGACCCATGCAAGAGCATCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 72 bp AGAACCTCTTGGCCCATAGCTGTTCCCCATGTTGTATaGTGTCCCATCTGGGTCGTAATGAGGATGTGCAGT +
Preference number: 6 (lower is better)
Translates to: RTSWPIAVPHVV*CPIWVVMRMCS
Trigger: ACTGCACATCCTCATTACGACCCAGATGGGACAGCATACAACATGGGGAACAGCTATGGGCCAAGAGGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 72 bp GGCTCAAACCTTGACATGAAACGTTCAAAGATGCTCTaGCATGGGTCAGGAAGGGCCAGCGTGCCAAATTCT +
Preference number: 6 (lower is better)
Translates to: GSNLDMKRSKML*HGSGRASVPNS
Trigger: AGAATTTGGCACGCTGGCCCTTCCTGACCCATGCAAGAGCATCTTTGAACGTTTCATGTCAAGGTTTGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 72 bp GCATCCAAGACAAGGAGGAAGTTGCTTTCACTCTGGTaGGGAGTGATCACCACAGAGAGTATAACCCCACTG +
Preference number: 6 (lower is better)
Translates to: ASKTRRKLLSLW*GVITTESITPL
Trigger: CAGTGGGGTTATACTCTCTGTGGTGATCACTCCCAACCAGAGTGAAAGCAACTTCCTCCTTGTCTTGGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 72 bp GTTGTATGCTGTCCCATCTGGGTCGTAATGAGGATGTaGAGTGGCTCCATTCACAGCAATGAATTTGCTCCA +
Preference number: 6 (lower is better)
Translates to: VVCCPIWVVMRM*SGSIHSNEFAP
Trigger: TGGAGCAAATTCATTGCTGTGAATGGAGCCACTGCACATCCTCATTACGACCCAGATGGGACAGCATACAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 72 bp GCACTGTTGGCCTTATATGTGTCACTCTGTAGAAACTaGCTCTTGTATGTCACTGTGCCCCTCTCCATTCGG +
Preference number: 6 (lower is better)
Translates to: ALLALYVSLCRN*LLYVTVPLSIR
Trigger: CCGAATGGAGAGGGGCACAGTGACATACAAGAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 90 bp ATAGTAGGTGGCTCAAACCTTGACATGAAACGTTCAAAGATGCTCTaGCATGGGTCAGGAAGGGCCAGCGTGCCAAATTCTGAGATCACA +
Preference number: 6 (lower is better)
Translates to: IVGGSNLDMKRSKML*HGSGRASVPNSEIT
Trigger: TGTGATCTCAGAATTTGGCACGCTGGCCCTTCCTGACCCATGCAAGAGCATCTTTGAACGTTTCATGTCAAGGTTTGAGCCACCTACTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS GCA 72 bp CACTGTTGGCCTTATATGTGTCACTCTGTAGAAACTTaGTCTTGTATGTCACTGTGCCCCTCTCCATTCGGA +
Preference number: 6 (lower is better)
Translates to: HCWPYMCHSVET*SCMSLCPSPFG
Trigger: TCCGAATGGAGAGGGGCACAGTGACATACAAGAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 90 bp GCCAGCGTGCCAAATTCTGAGATCACAATTCTACCTCCAGCACTGTaGGCCTTATATGTGTCACTCTGTAGAAACTTGCTCTTGTATGTC +
Preference number: 6 (lower is better)
Translates to: ASVPNSEITILPPAL*ALYVSLCRNLLLYV
Trigger: GACATACAAGAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTGCTGGAGGTAGAATTGTGATCTCAGAATTTGGCACGCTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS TCA 72 bp GTTGGTGTTGTCAGTCATAGTAGGTGGCTCAAACCTTaGCATGAAACGTTCAAAGATGCTCTTGCATGGGTC +
Preference number: 6 (lower is better)
Translates to: VGVVSHSRWLKP*HETFKDALAWV
Trigger: GACCCATGCAAGAGCATCTTTGAACGTTTCATGTCAAGGTTTGAGCCACCTACTATGACTGACAACACCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 72 bp CATCTAAGGGCAAGACAAATCTTCGAGGGAAAGACTTaGCCTTTAACTCATAGACCTGATCAAGCCCCTCTC +
Preference number: 6 (lower is better)
Translates to: HLRARQIFEGKT*PLTHRPDQAPL
Trigger: GAGAGGGGCTTGATCAGGTCTATGAGTTAAAGGCAAAGTCTTTCCCTCGAAGATTTGTCTTGCCCTTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 90 bp GCACAGATCAATCACAATACAGCCCTGGTCCTCAAAGGCATTGATTaGATGATAGGTAAGAAAAGGCATGCTGTAGTACATTCCTGGGAG +
Preference number: 6 (lower is better)
Translates to: AQINHNTALVLKGID*MIGKKRHAVVHSWE
Trigger: CTCCCAGGAATGTACTACAGCATGCCTTTTCTTACCTATCATCAAATCAATGCCTTTGAGGACCAGGGCTGTATTGTGATTGATCTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 72 bp CCAAATTCTGAGATCACAATTCTACCTCCAGCACTGTaGGCCTTATATGTGTCACTCTGTAGAAACTTGCTC +
Preference number: 6 (lower is better)
Translates to: PNSEITILPPAL*ALYVSLCRNLL
Trigger: GAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTGCTGGAGGTAGAATTGTGATCTCAGAATTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CCA 72 bp CAAATTCTGAGATCACAATTCTACCTCCAGCACTGTTaGCCTTATATGTGTCACTCTGTAGAAACTTGCTCT +
Preference number: 6 (lower is better)
Translates to: QILRSQFYLQHC*PYMCHSVETCS
Trigger: AGAGCAAGTTTCTACAGAGTGACACATATAAGGCCAACAGTGCTGGAGGTAGAATTGTGATCTCAGAATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2
CDS CAA 90 bp ACAGCTTCATCTTTACAGGCTGTTCGACAAAGATTATGTAGTTTTTaGTCATTCCAAAGCTATGGTAGTAAGAAGGCTTCATTTTCTCAG +
Preference number: 6 (lower is better)
Translates to: TASSLQAVRQRLCSF*SFQSYGSKKASFSQ
Trigger: CTGAGAAAATGAAGCCTTCTTACTACCATAGCTTTGGAATGACAAAAAACTACATAATCTTTGTCGAACAGCCTGTAAAGATGAAGCTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000119103.2