Pregenerated sensors for BCL7C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030814Ensembl transcript IDs: ENSMUST00000061468.9, ENSMUST00000106282.8, ENSMUST00000153277.3, ENSMUST00000205977.2, ENSMUST00000206200.2, ENSMUST00000207019.2
Found 183 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCACTTCAGTGCAGCAACCCTCACCGGAGGGCACGCCCCCGCTGTaGACCACTGCACAACACAGCACCTCCCCTTCAGCCCAGCCACAC | + |
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Preference number: 1 (lower is better) Translates to: PTSVQQPSPEGTPPL*TTAQHSTSPSAQPH Trigger: GTGTGGCTGGGCTGAAGGGGAGGTGCTGTGTTGTGCAGTGGTGCACAGCGGGGGCGTGCCCTCCGGTGAGGGTTGCTGCACTGAAGTGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR GCA 90 bp | ACCTCCCCTTCCCTTGTGGTATCGTCCTGGGTGCCCTCTGGGCCTTaGTCCCACTTCCGGGAGCTCTGGGTTCCGGAACCGTGGAAGTTG | + |
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Preference number: 1 (lower is better) Translates to: TSPSLVVSSWVPSGP*SHFRELWVPEPWKL Trigger: CAACTTCCACGGTTCCGGAACCCAGAGCTCCCGGAAGTGGGAGCAAGGCCCAGAGGGCACCCAGGACGATACCACAAGGGAAGGGGAGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | GCCCTCCGAGTCCTCTGTGTCACCCTGGGCTGCCTCAGGGACAGATaGCACTGGCTCAAAGACAGGGTAAGCTTCGGGGGCCTCAGCTTC | + |
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Preference number: 1 (lower is better) Translates to: ALRVLCVTLGCLRDR*HWLKDRVSFGGLSF Trigger: GAAGCTGAGGCCCCCGAAGCTTACCCTGTCTTTGAGCCAGTGCCATCTGTCCCTGAGGCAGCCCAGGGTGACACAGAGGACTCGGAGGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000153277.3 ENSMUST00000207019.2 |
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| 3UTR GCA 90 bp | GGACAAGCAGAGAGCTGGCTGCCGACCTCCATTGCTGGCTGCGGGTaGCCAGCTCCAAAGCCCTCTCCACCCTTAAACGGTGTGGGTAAA | + |
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Preference number: 1 (lower is better) Translates to: GQAESWLPTSIAGCG*PAPKPSPPLNGVGK Trigger: TTTACCCACACCGTTTAAGGGTGGAGAGGGCTTTGGAGCTGGGCACCCGCAGCCAGCAATGGAGGTCGGCAGCCAGCTCTCTGCTTGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | TGGACCACATGTCTCCATCCATTCCTGGGGCAGGAGGCTGTGGCCTaGTCTGAAAGGTCACTGGGCCATGTGCACCCCTCGATTGACCTG | + |
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Preference number: 1 (lower is better) Translates to: WTTCLHPFLGQEAVA*SERSLGHVHPSIDL Trigger: CAGGTCAATCGAGGGGTGCACATGGCCCAGTGACCTTTCAGACCAGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGACATGTGGTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | AGTGCTGGACCACATGTCTCCATCCATTCCTGGGGCAGGAGGCTGTaGCCTGGTCTGAAAGGTCACTGGGCCATGTGCACCCCTCGATTG | + |
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Preference number: 1 (lower is better) Translates to: SAGPHVSIHSWGRRL*PGLKGHWAMCTPRL Trigger: CAATCGAGGGGTGCACATGGCCCAGTGACCTTTCAGACCAGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGACATGTGGTCCAGCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | CTTCGGGGGCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTaGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCCCCC | + |
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Preference number: 1 (lower is better) Translates to: LRGPQLLAILEQAPP*SALGVHQYRLQVSP Trigger: GGGGGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGCCCCCGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| 3UTR CCA 90 bp | CGCCGGAATCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTaGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCCCCC | + |
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Preference number: 1 (lower is better) Translates to: RRNPQLLAILEQAPP*SALGVHQYRLQVSP Trigger: GGGGGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGATTCCGGCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
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| 3UTR GCA 90 bp | CCAGAGTCCATAGGCTCGTGGAAGCGGGTGAGGCTGCCAGGTGCTTaGTGGAGTGGTGTCTCTACACACGGGCAATTGAATCTTCACACC | + |
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Preference number: 1 (lower is better) Translates to: PESIGSWKRVRLPGA*WSGVSTHGQLNLHT Trigger: GGTGTGAAGATTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGCCTATGGACTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR GCA 90 bp | AGGCCCAGAGTCCATAGGCTCGTGGAAGCGGGTGAGGCTGCCAGGTaGTTGCTGGAGTGGTGTCTCTACACACGGGCAATTGAATCTTCA | + |
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Preference number: 1 (lower is better) Translates to: RPRVHRLVEAGEAAR*LLEWCLYTRAIESS Trigger: TGAAGATTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGCCTATGGACTCTGGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | GGGACCTGCTCTGGCCCAGTAGTTTTGGACCCACAGCAAGCAGGATaGATCCATAATTTAGGGACAGGGACAAGCAGAGAGCTGGCTGCC | + |
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Preference number: 1 (lower is better) Translates to: GTCSGPVVLDPQQAG*IHNLGTGTSRELAA Trigger: GGCAGCCAGCTCTCTGCTTGTCCCTGTCCCTAAATTATGGATCCATCCTGCTTGCTGTGGGTCCAAAACTACTGGGCCAGAGCAGGTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | TGCCCAGCTCCAAAGCCCTCTCCACCCTTAAACGGTGTGGGTAAATaGCTGGATCTTGAGGCAGCTAAGGAAGACCTAAGGGCCTCCCCT | + |
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Preference number: 1 (lower is better) Translates to: CPAPKPSPPLNGVGK*LDLEAAKEDLRASP Trigger: AGGGGAGGCCCTTAGGTCTTCCTTAGCTGCCTCAAGATCCAGTCATTTACCCACACCGTTTAAGGGTGGAGAGGGCTTTGGAGCTGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | GAGTCCATAGGCTCGTGGAAGCGGGTGAGGCTGCCAGGTGCTTGCTaGAGTGGTGTCTCTACACACGGGCAATTGAATCTTCACACCATT | + |
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Preference number: 1 (lower is better) Translates to: ESIGSWKRVRLPGAC*SGVSTHGQLNLHTI Trigger: AATGGTGTGAAGATTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGCCTATGGACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | ACAAAGCTCACAGCTGCAGCCCACCTGCATGCCCAGCACAAAAAGTaGTACACTAGCAGGGACTGTGGAGTCAGGTGGGTAGACTGGATG | + |
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Preference number: 1 (lower is better) Translates to: TKLTAAAHLHAQHKK*YTSRDCGVRWVDWM Trigger: CATCCAGTCTACCCACCTGACTCCACAGTCCCTGCTAGTGTACCACTTTTTGTGCTGGGCATGCAGGTGGGCTGCAGCTGTGAGCTTTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | AGCCCATGGCTTCTGGGAAGTCGCCAATCAGGAGCTGGGCCTAGATaGTGCTTCCTGTATCAATGGCACTCCAGAGAGGAATCTGAGGGA | + |
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Preference number: 1 (lower is better) Translates to: SPWLLGSRQSGAGPR*CFLYQWHSREESEG Trigger: TCCCTCAGATTCCTCTCTGGAGTGCCATTGATACAGGAAGCATCATCTAGGCCCAGCTCCTGATTGGCGACTTCCCAGAAGCCATGGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | CATAGGCTCGTGGAAGCGGGTGAGGCTGCCAGGTGCTTGCTGGAGTaGTGTCTCTACACACGGGCAATTGAATCTTCACACCATTCACAA | + |
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Preference number: 1 (lower is better) Translates to: HRLVEAGEAARCLLE*CLYTRAIESSHHSQ Trigger: TTGTGAATGGTGTGAAGATTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGCCTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | ACCTTTAATCCCAGCACTGGAGAGGCAGAGATAGACAGACCTCTGTaGGTTCAAGACTGGCCTGGTCTAGTGGGTTCATGGCCAGCAGAG | + |
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Preference number: 1 (lower is better) Translates to: TFNPSTGEAEIDRPL*VQDWPGLVGSWPAE Trigger: CTCTGCTGGCCATGAACCCACTAGACCAGGCCAGTCTTGAACTCACAGAGGTCTGTCTATCTCTGCCTCTCCAGTGCTGGGATTAAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | GTGCAGCCTTGGACATTGGACATGACGTTCCCAAGCCCCAACCCCTaGTCTGCTAACTGGGCTAGGGATTACTTTGTGAGGCTAGGCTTT | + |
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Preference number: 1 (lower is better) Translates to: VQPWTLDMTFPSPNP*SANWARDYFVRLGF Trigger: AAAGCCTAGCCTCACAAAGTAATCCCTAGCCCAGTTAGCAGATCAGGGGTTGGGGCTTGGGAACGTCATGTCCAATGTCCAAGGCTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | TGGAGAGGCAGAGATAGACAGACCTCTGTGAGTTCAAGACTGGCCTaGTCTAGTGGGTTCATGGCCAGCAGAGGAAGAAAGGAAGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: WRGRDRQTSVSSRLA*SSGFMASRGRKEGR Trigger: CCTTCCTTCCTTTCTTCCTCTGCTGGCCATGAACCCACTAGACCAGGCCAGTCTTGAACTCACAGAGGTCTGTCTATCTCTGCCTCTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | CAGGAAAGGCTGACACATGAAACGAAGGCAGACATCCTTAGAATTTaGGAACCAAGAACTGAGGGGAGCCGTGCCAGGCCAGTCTTCTGT | + |
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Preference number: 1 (lower is better) Translates to: QERLTHETKADILRI*EPRTEGSRARPVFC Trigger: ACAGAAGACTGGCCTGGCACGGCTCCCCTCAGTTCTTGGTTCCCAAATTCTAAGGATGTCTGCCTTCGTTTCATGTGTCAGCCTTTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | TCACGAATGTATCTCCTGCACCAGCTGCTGAATCTGGCACACCACTaGGCACTCGATAACCCGCTGACAGACGAAAAAGGTGAACCCTAT | + |
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Preference number: 1 (lower is better) Translates to: SRMYLLHQLLNLAHH*ALDNPLTDEKGEPY Trigger: ATAGGGTTCACCTTTTTCGTCTGTCAGCGGGTTATCGAGTGCCCAGTGGTGTGCCAGATTCAGCAGCTGGTGCAGGAGATACATTCGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | CTGTATCAATGGCACTCCAGAGAGGAATCTGAGGGACCCAGGGGCTaGGCTCAAGTCCCTTACCACTCAATGTCCATGTCATCTCAGTTA | + |
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Preference number: 1 (lower is better) Translates to: LYQWHSREESEGPRG*AQVPYHSMSMSSQL Trigger: TAACTGAGATGACATGGACATTGAGTGGTAAGGGACTTGAGCTCAGCCCCTGGGTCCCTCAGATTCCTCTCTGGAGTGCCATTGATACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | GTCTCTACACACGGGCAATTGAATCTTCACACCATTCACAAGCTGTaGCATTACCTTTTGCCCAGTGCTTCAGGGGTTGCTCGCTGCTCA | + |
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Preference number: 1 (lower is better) Translates to: VSTHGQLNLHTIHKL*HYLLPSASGVARCS Trigger: TGAGCAGCGAGCAACCCCTGAAGCACTGGGCAAAAGGTAATGCCACAGCTTGTGAATGGTGTGAAGATTCAATTGCCCGTGTGTAGAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | CCGCCTGCCTCTGCCTCCAAGATTAAAGGCGTGCGCCACCACGCCTaGTCCCTGCTTTTGTTTTTGTTTGTTTGCTTGCTTGTTTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: PPASASKIKGVRHHA*SLLLFLFVCLLVCF Trigger: AAAACAAACAAGCAAGCAAACAAACAAAAACAAAAGCAGGGACCAGGCGTGGTGGCGCACGCCTTTAATCTTGGAGGCAGAGGCAGGCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR GCA 90 bp | TCTGAGGTCCAGAGGAGGTCACTTAGGCATGGAACCTTACTCTTCTaGATGCTATCCTTGTTCAAGATCAGAGATCTGAGACTGGCAGGC | + |
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Preference number: 1 (lower is better) Translates to: SEVQRRSLRHGTLLF*MLSLFKIRDLRLAG Trigger: GCCTGCCAGTCTCAGATCTCTGATCTTGAACAAGGATAGCATGCAGAAGAGTAAGGTTCCATGCCTAAGTGACCTCCTCTGGACCTCAGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR GCA 90 bp | CTATTTGAAGACAGAGGAGCTGAAGAAGGCTCAGGCCCAAGGTGTTaGTCACTGGCTCTTAAGTCTGGGCATCTTTCTCTGGATGTTGGT | + |
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Preference number: 1 (lower is better) Translates to: LFEDRGAEEGSGPRC*SLALKSGHLSLDVG Trigger: ACCAACATCCAGAGAAAGATGCCCAGACTTAAGAGCCAGTGAGCAACACCTTGGGCCTGAGCCTTCTTCAGCTCCTCTGTCTTCAAATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| 3UTR GCA 90 bp | GAACAGAACGTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATaGAGACATCTTTTGTGCCACTCTCATAAGGTTCCAGTCACTTTG | + |
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Preference number: 1 (lower is better) Translates to: EQNVYRSVGEAAAKV*RHLLCHSHKVPVTL Trigger: CAAAGTGACTGGAACCTTATGAGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAACGTTCTGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR GCA 90 bp | AGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTaGCACTCTCATAAGGTTCCAGTCACTTTGAAATGGTCTCCAAAT | + |
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Preference number: 1 (lower is better) Translates to: RSVGEAAAKVCRHLL*HSHKVPVTLKWSPN Trigger: ATTTGGAGACCATTTCAAAGTGACTGGAACCTTATGAGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR GCA 90 bp | TGGCTGCCAGCGATGGAAACACTTGCAGTCACTTGTCACCTCTTGTaGACACAGGCCTTCCTGCTATTTGAGTTGTATTTAAAAAGACAA | + |
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Preference number: 1 (lower is better) Translates to: WLPAMETLAVTCHLL*TQAFLLFELYLKRQ Trigger: TTGTCTTTTTAAATACAACTCAAATAGCAGGAAGGCCTGTGTGCACAAGAGGTGACAAGTGACTGCAAGTGTTTCCATCGCTGGCAGCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | TGCAGTCACTTGTCACCTCTTGTGCACACAGGCCTTCCTGCTATTTaGGTTGTATTTAAAAAGACAAACAGTGGATACACACGTTCACAA | + |
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Preference number: 1 (lower is better) Translates to: CSHLSPLVHTGLPAI*VVFKKTNSGYTRSQ Trigger: TTGTGAACGTGTGTATCCACTGTTTGTCTTTTTAAATACAACTCAAATAGCAGGAAGGCCTGTGTGCACAAGAGGTGACAAGTGACTGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CCA 90 bp | TATCCGCGATTTCAACTCATGACTCTGGAGTACCATGAATCTAATTaGATCCGTAAACATTTTGTTATTCAACTACTACCCAGTGACACA | + |
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Preference number: 1 (lower is better) Translates to: YPRFQLMTLEYHESN*IRKHFVIQLLPSDT Trigger: TGTGTCACTGGGTAGTAGTTGAATAACAAAATGTTTACGGATCCAATTAGATTCATGGTACTCCAGAGTCATGAGTTGAAATCGCGGATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | ACATGCATCGTGTGTTTTATACAAATCCCAGGGTGTTCTGAGAAATaGTGCATTGGAAATAAGTCTTTATATCCGCGATTTCAACTCATG | + |
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Preference number: 1 (lower is better) Translates to: TCIVCFIQIPGCSEK*CIGNKSLYPRFQLM Trigger: CATGAGTTGAAATCGCGGATATAAAGACTTATTTCCAATGCATCATTTCTCAGAACACCCTGGGATTTGTATAAAACACACGATGCATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR TCA 90 bp | AATGATGCATTGGAAATAAGTCTTTATATCCGCGATTTCAACTCATaGCTCTGGAGTACCATGAATCTAATTGGATCCGTAAACATTTTG | + |
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Preference number: 1 (lower is better) Translates to: NDALEISLYIRDFNS*LWSTMNLIGSVNIL Trigger: CAAAATGTTTACGGATCCAATTAGATTCATGGTACTCCAGAGTCATGAGTTGAAATCGCGGATATAAAGACTTATTTCCAATGCATCATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR TCA 90 bp | TTTGGTCAGGATCTTGGCGAGTTGCCCCGGGAGGGCCCTCTGACCTGCATTTGGGTGCCAGGGCCTGGCTaGGCTGGAGCGTTCTGGCTG | + |
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Preference number: 2 (lower is better) Translates to: FGQDLGELPREGPLTCIWVPGPG*AGAFWL Trigger: CAGCCAGAACGCTCCAGCTCAGCCAGGCCCTGGCAC...CCAAATGCAGGTCAGAGGGCCCTCCCGGGGCAACTCGCCAAGATCCTGACCAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGTGAGTGCTTCAGCCGAGGGCTCGTGCCAGGGCCTGGCTGAGCTGGAGCGTAGTTCCCCAGTCACTTaGCATGACAGCCCATGGCTT | + |
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Preference number: 2 (lower is better) Translates to: EVSASAEGSCQGLAELERSSPVT*HDSPWL Trigger: AAGCCATGGGCTGTCATGCCAAGTGACTGGGGAACT...ACGCTCCAGCTCAGCCAGGCCCTGGCACGAGCCCTCGGCTGAAGCACTCACCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCGCCCTCCGAGTCCTCTGTGTCACCCTGGGCTGCCTCAGGGACAGATGGCAAGGTGTTGCTCACTaGCTCTTAAGTCTGGGCATC | + |
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Preference number: 2 (lower is better) Translates to: GGALRVLCVTLGCLRDRWQGVAH*LLSLGI Trigger: GATGCCCAGACTTAAGAGCCAGTGAGCAACACCTTG...CCATCTGTCCCTGAGGCAGCCCAGGGTGACACAGAGGACTCGGAGGGCGCCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| 3UTR-3UTR GCA 90 bp | TGCTGGACCACATGTCTCCATCCATTCCTGGGGCAGGAGGCTGTGGCCTGGTCTATTGCTGGCTGCGGGTaGCCAGCTCCAAAGCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: CWTTCLHPFLGQEAVAWSIAGCG*PAPKPS Trigger: AGAGGGCTTTGGAGCTGGGCACCCGCAGCCAGCAAT...AGACCAGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGACATGTGGTCCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 90 bp | GCTTCGGGGGCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTaGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: ASGASASSNSGTGSS*VSFGGSSVPPAGVP Trigger: GGGGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGCCCCCGAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| 3UTR-3UTR CCA 90 bp | CTGGAGCAACAGGACAGGAGGCAGGCGGCTTCTCAGGGGTCAGGGGCATTTGGATGCCTCAGGGACAGATaGCACTGGCTCAAAGACAGG | + |
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Preference number: 2 (lower is better) Translates to: LEQQDRRQAASQGSGAFGCLRDR*HWLKDR Trigger: CCTGTCTTTGAGCCAGTGCCATCTGTCCCTGAGGCA...TCCAAATGCCCCTGACCCCTGAGAAGCCGCCTGCCTCCTGTCCTGTTGCTCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000153277.3 ENSMUST00000207019.2 |
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| 3UTR-3UTR GCA 90 bp | GACTCGGGGAACAGAACGTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATCACCTCCAGGGGCCATaGCTGGCCCTTTGGTGGATG | + |
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Preference number: 2 (lower is better) Translates to: DSGNRTFTGQSGRLQPKYHLQGP*LALWWM Trigger: CATCCACCAAAGGGCCAGGCATGGCCCCTGGAGGTG...ATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAACGTTCTGTTCCCCGAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 90 bp | ACGCCGGAATCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTaGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: TPESSASSNSGTGSS*VSFGGSSVPPAGVP Trigger: GGGGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGATTCCGGCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
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| 3UTR-3UTR TCA 90 bp | AGGCGGGCGAGGCATTACTGTAGGGGGTCTCCACTGTGTTTTAAGTGTAAACAGGCTCGTGGAAGCGGGTaGGGCTGCCAGGTGCTTGCT | + |
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Preference number: 2 (lower is better) Translates to: RRARHYCRGSPLCFKCKQARGSG*GCQVLA Trigger: AGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGC...CTGTTTACACTTAAAACACAGTGGAGACCCCCTACAGTAATGCCTCGCCCGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTGGACCACATGTCTCCATCCATTCCTGGGGCAGGAGGCTGTGGCCTGGTCTGAACAGGCTCCTCCTTaGTCAGCTTTGGGGGTTCAT | + |
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Preference number: 2 (lower is better) Translates to: CWTTCLHPFLGQEAVAWSEQAPP*SALGVH Trigger: ATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTC...AGACCAGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGACATGTGGTCCAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR CCA 90 bp | AATGGCACTCCAGAGAGGAATCTGAGGGACCCAGGGGCTGAGCTCAAGTCCCTTCCATGCCTGGCCCTTTaGTGGATGGCTGCCCTAAGT | + |
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Preference number: 2 (lower is better) Translates to: NGTPERNLRDPGAELKSLPCLAL*WMAALS Trigger: ACTTAGGGCAGCCATCCACCAAAGGGCCAGGCATGG...AAGGGACTTGAGCTCAGCCCCTGGGTCCCTCAGATTCCTCTCTGGAGTGCCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR GCA 90 bp | AATGGCACTCCAGAGAGGAATCTGAGGGACCCAGGGGCTGAGCTCAAGTCCCTTAGGCTGCCAGGTGCTTaGTGGAGTGGTGTCTCTACA | + |
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Preference number: 2 (lower is better) Translates to: NGTPERNLRDPGAELKSLRLPGA*WSGVST Trigger: TGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCT...AAGGGACTTGAGCTCAGCCCCTGGGTCCCTCAGATTCCTCTCTGGAGTGCCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR CCA 90 bp | CCAGGCCAGTCTTCTGTAGCCCTGACATTAAAAATGTATGCGTGCTCCCCCGCCTGCCTGGCCCTTTGGTaGATGGCTGCCCTAAGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: PGQSSVALTLKMYACSPACLALW*MAALSV Trigger: CACACTTAGGGCAGCCATCCACCAAAGGGCCAGGCA...GGCGGGGGAGCACGCATACATTTTTAATGTCAGGGCTACAGAAGACTGGCCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | AGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTGCCACTCTGTCTCCATCCATTCCTaGGGCAGGAGGCTGTGGCCT | + |
|
Preference number: 2 (lower is better) Translates to: RSVGEAAAKVCRHLLCHSVSIHS*GRRLWP Trigger: AGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGAC...AGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR TCA 90 bp | TCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTGGTCAGCTTTGGGGGTTCAGAAGGGCTCTCCTGGTaGGTCTCACGCCGGAATCCT | + |
|
Preference number: 2 (lower is better) Translates to: SASSNSGTGSSLVSFGGSEGLSW*VSRRNP Trigger: AGGATTCCGGCGTGAGACTCACCAGGAGAGCCCTTC...TGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
||
| 3UTR-3UTR TCA 90 bp | TCTGGAACAGGCTCCTCCTTGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCATTCAGGCCTTTCTCTTaGAGGGCTCTCCTGGTGAGT | + |
|
Preference number: 2 (lower is better) Translates to: SGTGSSLVSFGGSSVPPAFRPFS*RALLVS Trigger: ACTCACCAGGAGAGCCCTTCAAGAGAAAGGCCTGAA...TGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
||
| 3UTR-3UTR GCA 90 bp | AATGGCACTCCAGAGAGGAATCTGAGGGACCCAGGGGCTGAGCTCAAGTCCCTTTGTGGCATTACCTTTTaGCCAGTGCTTCAGGGGTTG | + |
|
Preference number: 2 (lower is better) Translates to: NGTPERNLRDPGAELKSLCGITF*PVLQGL Trigger: CAACCCCTGAAGCACTGGGCAAAAGGTAATGCCACA...AAGGGACTTGAGCTCAGCCCCTGGGTCCCTCAGATTCCTCTCTGGAGTGCCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | TTACTTGAAGTTCCCCAGTCACTTGGCATGACAGCCCATGGCTTCTGGGAAGTCCAGACATTCCCTGTCTaGGACCTGCTCTGGCCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: LLEVPQSLGMTAHGFWEVQTFPV*DLLWPS Trigger: ACTGGGCCAGAGCAGGTCCCAGACAGGGAATGTCTG...GACTTCCCAGAAGCCATGGGCTGTCATGCCAAGTGACTGGGGAACTTCAAGTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR GCA 90 bp | GAGGTTGATGAAAGCCCTTGGAATCACTCAGATGGCTCATCTGCCATGAGTTTCACCTCCATTGCTGGCTaGGGGTGCCCAGCTCCAAAG | + |
|
Preference number: 2 (lower is better) Translates to: EVDESPWNHSDGSSAMSFTSIAG*GCPAPK Trigger: CTTTGGAGCTGGGCACCCGCAGCCAGCAATGGAGGT...GAAACTCATGGCAGATGAGCCATCTGAGTGATTCCAAGGGCTTTCATCAACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR GCA 90 bp | AGGCGGGCGAGGCATTACTGTAGGGGGTCTCCACTGTGTTTTAAGTGTAAACAGTCCCCACAGGACCTGTaGAGCCTTGGACATTGGACA | + |
|
Preference number: 2 (lower is better) Translates to: RRARHYCRGSPLCFKCKQSPQDL*SLGHWT Trigger: TGTCCAATGTCCAAGGCTGCACAGGTCCTGTGGGGA...CTGTTTACACTTAAAACACAGTGGAGACCCCCTACAGTAATGCCTCGCCCGCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | CCAGGTGAAGGGCTTGGATTCTGTCCCCACAGGACCTGTGCAGCCTTGGACATTCCACAGCAAGCAGGATaGATCCATAATTTAGGGACA | + |
|
Preference number: 2 (lower is better) Translates to: PGEGLGFCPHRTCAALDIPQQAG*IHNLGT Trigger: TGTCCCTAAATTATGGATCCATCCTGCTTGCTGTGG...AATGTCCAAGGCTGCACAGGTCCTGTGGGGACAGAATCCAAGCCCTTCACCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | CCAGGTGAAGGGCTTGGATTCTGTCCCCACAGGACCTGTGCAGCCTTGGACATTTTGGCACATGTCTTCTaGAGCCAAGGGTTAATTAGC | + |
|
Preference number: 2 (lower is better) Translates to: PGEGLGFCPHRTCAALDILAHVF*SQGLIS Trigger: GCTAATTAACCCTTGGCTCCAGAAGACATGTGCCAA...AATGTCCAAGGCTGCACAGGTCCTGTGGGGACAGAATCCAAGCCCTTCACCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | GACTCGGGGAACAGAACGTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATCATTATTGGGAAACCTaGGATTGTTGCTGCTGCTGG | + |
|
Preference number: 2 (lower is better) Translates to: DSGNRTFTGQSGRLQPKYHYWET*DCCCCW Trigger: CCAGCAGCAGCAACAATCCCAGGTTTCCCAATAATG...ATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAACGTTCTGTTCCCCGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CAA 90 bp | GGGCAATTGAATCTTCACACCATTCACAAGCTGTGGCATTACCTTTaGCCCAGTGCTTCAGGGGTTGCTCGCTGCTCAAGTCTTGCTGGT | + |
|
Preference number: 2 (lower is better) Translates to: GQLNLHTIHKLWHYL*PSASGVARCSSLAG Trigger: ACCAGCAAGACTTGAGCAGCGAGCAACCCCTGAAGCACTGGGCAAAAGGTAATGCCACAGCTTGTGAATGGTGTGAAGATTCAATTGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CAA 90 bp | CTCATCTGCCATGAGTTTCTCAAAGTGGGTAGTTTCCAGGTAGATTaGGCAGTGCTGGACCACATGTCTCCATCCATTCCTGGGGCAGGA | + |
|
Preference number: 2 (lower is better) Translates to: LICHEFLKVGSFQVD*AVLDHMSPSIPGAG Trigger: TCCTGCCCCAGGAATGGATGGAGACATGTGGTCCAGCACTGCCAAATCTACCTGGAAACTACCCACTTTGAGAAACTCATGGCAGATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | GACTCGGGGAACAGAACGTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATACCATTCACAAGCTGTaGCATTACCTTTTGCCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: DSGNRTFTGQSGRLQPKYTIHKL*HYLLPS Trigger: ACTGGGCAAAAGGTAATGCCACAGCTTGTGAATGGT...ATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAACGTTCTGTTCCCCGAGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | TTTGGTCAGGATCTTGGCGAGTTGCCCCGGGAGGGCCCTCTGACCTGCATTTGGATGTCATCTCAGTTATaGACACAGAACATCTGCTTA | + |
|
Preference number: 2 (lower is better) Translates to: FGQDLGELPREGPLTCIWMSSQL*TQNICL Trigger: TAAGCAGATGTTCTGTGTCCATAACTGAGATGACAT...CCAAATGCAGGTCAGAGGGCCCTCCCGGGGCAACTCGCCAAGATCCTGACCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR TCA 90 bp | AGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTGCCACTCTAATCCCAGGGTGTTCTaGGAAATGATGCATTGGAAA | + |
|
Preference number: 2 (lower is better) Translates to: RSVGEAAAKVCRHLLCHSNPRVF*EMMHWK Trigger: TTTCCAATGCATCATTTCTCAGAACACCCTGGGATT...AGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR GCA 90 bp | GCATTAAATAAGTCCCACAAGTTGCAATATGTAGTACAGTTAGCTCTCTGTGGTTGGTATCGTCCTGGGTaGCCTCTGGGCCTTGCTCCC | + |
|
Preference number: 2 (lower is better) Translates to: ALNKSHKLQYVVQLALCGWYRPG*PLGLAP Trigger: GGGAGCAAGGCCCAGAGGGCACCCAGGACGATACCA...ACCACAGAGAGCTAACTGTACTACATATTGCAACTTGTGGGACTTATTTAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CCA 90 bp | GCATTAAATAAGTCCCACAAGTTGCAATATGTAGTACAGTTAGCTCTCTGTGGTTCCAGGGGCCATGCCTaGCCCTTTGGTGGATGGCTG | + |
|
Preference number: 2 (lower is better) Translates to: ALNKSHKLQYVVQLALCGSRGHA*PFGGWL Trigger: CAGCCATCCACCAAAGGGCCAGGCATGGCCCCTGGA...ACCACAGAGAGCTAACTGTACTACATATTGCAACTTGTGGGACTTATTTAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR TCA 90 bp | AGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTGCCACTCTTTGTTGTGTTTTTCCTaGGGTGCTAGATACGAAATC | + |
|
Preference number: 2 (lower is better) Translates to: RSVGEAAAKVCRHLLCHSLLCFS*GARYEI Trigger: GATTTCGTATCTAGCACCTCAGGAAAAACACAACAA...AGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR GCA 90 bp | AGGCGGGCGAGGCATTACTGTAGGGGGTCTCCACTGTGTTTTAAGTGTAAACAGGGAACCTTACTCTTCTaGATGCTATCCTTGTTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: RRARHYCRGSPLCFKCKQGTLLF*MLSLFK Trigger: CTTGAACAAGGATAGCATGCAGAAGAGTAAGGTTCC...CTGTTTACACTTAAAACACAGTGGAGACCCCCTACAGTAATGCCTCGCCCGCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGATCAGACAAGGGGTGGACTATTTGAAGACAGAGGAGCTGAAGAAGGCTCATCTTTCTCTGGATGTTaGTCTCCTCGTGTACAGAGA | + |
|
Preference number: 2 (lower is better) Translates to: LDQTRGGLFEDRGAEEGSSFSGC*SPRVQR Trigger: TCTCTGTACACGAGGAGACCAACATCCAGAGAAAGA...TGAGCCTTCTTCAGCTCCTCTGTCTTCAAATAGTCCACCCCTTGTCTGATCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR-3UTR TCA 90 bp | AGGCGGGCGAGGCATTACTGTAGGGGGTCTCCACTGTGTTTTAAGTGTAAACAGAGGTTCCAGTCACTTTaGAATGGTCTCCAAATAAAA | + |
|
Preference number: 2 (lower is better) Translates to: RRARHYCRGSPLCFKCKQRFQSL*NGLQIK Trigger: TTTTATTTGGAGACCATTTCAAAGTGACTGGAACCT...CTGTTTACACTTAAAACACAGTGGAGACCCCCTACAGTAATGCCTCGCCCGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR-3UTR GCA 90 bp | ATAAATTGGCGAAACAGGAAACATACTAACAGTCCTCTAACAGCCGAAGTTCATCAGCTGCAGCCCACCTaGATGCCCAGCACAAAAAGT | + |
|
Preference number: 2 (lower is better) Translates to: INWRNRKHTNSPLTAEVHQLQPT*MPSTKS Trigger: ACTTTTTGTGCTGGGCATGCAGGTGGGCTGCAGCTG...ATGAACTTCGGCTGTTAGAGGACTGTTAGTATGTTTCCTGTTTCGCCAATTTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR TCA 90 bp | GGATACACACGTTCACAACACTGTTCTTTATCCAGAATCTTTAAACAAGAAGAGGAGAGCAGGAAAGGCTaGCACATGAAACGAAGGCAG | + |
|
Preference number: 2 (lower is better) Translates to: GYTRSQHCSLSRIFKQEEESRKG*HMKRRQ Trigger: CTGCCTTCGTTTCATGTGTCAGCCTTTCCTGCTCTC...CTCTTCTTGTTTAAAGATTCTGGATAAAGAACAGTGTTGTGAACGTGTGTATCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 90 bp | GTCACTTGTCACCTCTTGTGCACACAGGCCTTCCTGCTATTTGAGTaGTATTTAAAAAGACAAACAGTGGATACACACGTTCACAACACT | + |
|
Preference number: 2 (lower is better) Translates to: VTCHLLCTQAFLLFE*YLKRQTVDTHVHNT Trigger: AGTGTTGTGAACGTGTGTATCCACTGTTTGTCTTTTTAAATACAACTCAAATAGCAGGAAGGCCTGTGTGCACAAGAGGTGACAAGTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR TCA 90 bp | ATAAATTGGCGAAACAGGAAACATACTAACAGTCCTCTAACAGCCGAAGTTCATTCAACTACTACCCAGTaGCACACACTGGCAGTTTCT | + |
|
Preference number: 2 (lower is better) Translates to: INWRNRKHTNSPLTAEVHSTTTQ*HTLAVS Trigger: AGAAACTGCCAGTGTGTGTCACTGGGTAGTAGTTGA...ATGAACTTCGGCTGTTAGAGGACTGTTAGTATGTTTCCTGTTTCGCCAATTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CAA 90 bp | GTATGCAGACATCTTTTGTGCCACTCTCATAAGGTTCCAGTCACTTaGAAATGGTCTCCAAATAAAAAGTTAAACACCAGAATGCAAGTT | + |
|
Preference number: 2 (lower is better) Translates to: VCRHLLCHSHKVPVT*KWSPNKKLNTRMQV Trigger: AACTTGCATTCTGGTGTTTAACTTTTTATTTGGAGACCATTTCAAAGTGACTGGAACCTTATGAGAGTGGCACAAAAGATGTCTGCATAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GGGACAAGCAGAGAGCTGGCTGCCGACCTCCATTGCTaGCTGCGGGTGCCCAGCTCCAAAGCCCTCTCCACC | + |
|
Preference number: 3 (lower is better) Translates to: GTSRELAADLHC*LRVPSSKALST Trigger: GGTGGAGAGGGCTTTGGAGCTGGGCACCCGCAGCCAGCAATGGAGGTCGGCAGCCAGCTCTCTGCTTGTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | GAGTGCTTCAGCCGAGGGCTCGTGCCAGGGCCTGGCTaGGCTGGAGCGTTCTGGCTGCAAGGAGCAGATCAC | + |
|
Preference number: 3 (lower is better) Translates to: ECFSRGLVPGPG*AGAFWLQGADH Trigger: GTGATCTGCTCCTTGCAGCCAGAACGCTCCAGCTCAGCCAGGCCCTGGCACGAGCCCTCGGCTGAAGCACTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | TCCCTTGTGGTATCGTCCTGGGTGCCCTCTGGGCCTTaGTCCCACTTCCGGGAGCTCTGGGTTCCGGAACCG | + |
|
Preference number: 3 (lower is better) Translates to: SLVVSSWVPSGP*SHFRELWVPEP Trigger: CGGTTCCGGAACCCAGAGCTCCCGGAAGTGGGAGCAAGGCCCAGAGGGCACCCAGGACGATACCACAAGGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | ACAGGGACAAGCAGAGAGCTGGCTGCCGACCTCCATTaGTGGCTGCGGGTGCCCAGCTCCAAAGCCCTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: TGTSRELAADLH*WLRVPSSKALS Trigger: GGAGAGGGCTTTGGAGCTGGGCACCCGCAGCCAGCAATGGAGGTCGGCAGCCAGCTCTCTGCTTGTCCCTGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGCAACCCTCACCGGAGGGCACGCCCCCGCTGTGCACCACTGCACAACACAGCGGAACAGGCTCCTCCTaGGTCAGCTTTGGGGGTTCA | + |
|
Preference number: 3 (lower is better) Translates to: QQPSPEGTPPLCTTAQHSGTGSS*VSFGGS Trigger: TGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCC...GCTGTGTTGTGCAGTGGTGCACAGCGGGGGCGTGCCCTCCGGTGAGGGTTGCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | ACTTCCGGGAGCTCTGGGTTCCGGAACCGTGGAAGTTaGCCGAGAATTTGTCCGGAGGCCTCTCCTGGGGAG | + |
|
Preference number: 3 (lower is better) Translates to: TSGSSGFRNRGS*PRICPEASPGE Trigger: CTCCCCAGGAGAGGCCTCCGGACAAATTCTCGGCCAACTTCCACGGTTCCGGAACCCAGAGCTCCCGGAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | TGTCTCCATCCATTCCTGGGGCAGGAGGCTGTGGCCTaGTCTGAAAGGTCACTGGGCCATGTGCACCCCTCG | + |
|
Preference number: 3 (lower is better) Translates to: CLHPFLGQEAVA*SERSLGHVHPS Trigger: CGAGGGGTGCACATGGCCCAGTGACCTTTCAGACCAGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GTCCTCTGTGTCACCCTGGGCTGCCTCAGGGACAGATaGCACTGGCTCAAAGACAGGGTAAGCTTCGGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: VLCVTLGCLRDR*HWLKDRVSFGG Trigger: GCCCCCGAAGCTTACCCTGTCTTTGAGCCAGTGCCATCTGTCCCTGAGGCAGCCCAGGGTGACACAGAGGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000153277.3 ENSMUST00000207019.2 |
||
| 3UTR-3UTR CAA 90 bp | CTGGAGCAACAGGACAGGAGGCAGGCGGCTTCTCAGGGGTCAGGGGCATTTGGAGGAACAGGCTCCTCCTaGGTCAGCTTTGGGGGTTCA | + |
|
Preference number: 3 (lower is better) Translates to: LEQQDRRQAASQGSGAFGGTGSS*VSFGGS Trigger: TGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCC...TCCAAATGCCCCTGACCCCTGAGAAGCCGCCTGCCTCCTGTCCTGTTGCTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR-3UTR CAA 90 bp | TGCTGGACCACATGTCTCCATCCATTCCTGGGGCAGGAGGCTGTGGCCTGGTCTGAGGCTGCCAGGTGCTaGCTGGAGTGGTGTCTCTAC | + |
|
Preference number: 3 (lower is better) Translates to: CWTTCLHPFLGQEAVAWSEAARC*LEWCLY Trigger: GTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTC...AGACCAGGCCACAGCCTCCTGCCCCAGGAATGGATGGAGACATGTGGTCCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTGCCACTCTGGTGCCCTCTGGGCCTaGCTCCCACTTCCGGGAGCT | + |
|
Preference number: 3 (lower is better) Translates to: RSVGEAAAKVCRHLLCHSGALWA*LPLPGA Trigger: AGCTCCCGGAAGTGGGAGCAAGGCCCAGAGGGCACC...AGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | AGCCTCCTGAGGGGCTCGGTTTTCAGGCCTTTCTCTTaGAGGGCTCTCCTGGTGAGTCTCACGCCGGAATCC | + |
|
Preference number: 3 (lower is better) Translates to: SLLRGSVFRPFS*RALLVSLTPES Trigger: GGATTCCGGCGTGAGACTCACCAGGAGAGCCCTTCAAGAGAAAGGCCTGAAAACCGAGCCCCTCAGGAGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
||
| 3UTR TCA 72 bp | CGCTCTCCCTGCTCCCAACAGTGTAGCCATAGGCACTaGACTTCCCCACTTCAGTGCAGCAACCCTCACCGG | + |
|
Preference number: 3 (lower is better) Translates to: RSPCSQQCSHRH*TSPLQCSNPHR Trigger: CCGGTGAGGGTTGCTGCACTGAAGTGGGGAAGTTCAGTGCCTATGGCTACACTGTTGGGAGCAGGGAGAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GTAGTTCCAAAGGTCGAAGGTCACCTCCAGGGGCCATaGCTGGCCCTTTGGTGGATGGCTGCCCTAAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: VVPKVEGHLQGP*LALWWMAALSV Trigger: CACACTTAGGGCAGCCATCCACCAAAGGGCCAGGCATGGCCCCTGGAGGTGACCTTCGACCTTTGGAACTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | TCGTGCCAGGGCCTGGCTGAGCTGGAGCGTTCTGGCTaGAAGGAGCAGATCACTGGGCTTCATAAACACGAG | + |
|
Preference number: 3 (lower is better) Translates to: SCQGLAELERSG*KEQITGLHKHE Trigger: CTCGTGTTTATGAAGCCCAGTGATCTGCTCCTTGCAGCCAGAACGCTCCAGCTCAGCCAGGCCCTGGCACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GGGCAGGCTCCGTCCAGCAGCAGACCTCACTGCTGCTaGCGATTCCAATACAGTAAGCTCCTCCCATTACCC | + |
|
Preference number: 3 (lower is better) Translates to: GQAPSSSRPHCC*RFQYSKLLPLP Trigger: GGGTAATGGGAGGAGCTTACTGTATTGGAATCGGCAGCAGCAGTGAGGTCTGCTGCTGGACGGAGCCTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GGCCATGTGCACCCCTCGATTGACCTGAGGCAAGGTTaGCACCCTGGTTGGCACATGTCTTCTGGAGCCAAG | + |
|
Preference number: 3 (lower is better) Translates to: GHVHPSIDLRQG*HPGWHMSSGAK Trigger: CTTGGCTCCAGAAGACATGTGCCAACCAGGGTGCCAACCTTGCCTCAGGTCAATCGAGGGGTGCACATGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGAACAGGCTCCTCCTTGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGCCTCCTTGGTCAGCTTaGGGGGTTCATCAGTACCGC | + |
|
Preference number: 3 (lower is better) Translates to: WNRLLLGQLWGFISTACRPPWSA*GVHQYR Trigger: GCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGG...CCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000106282.8 ENSMUST00000153277.3 ENSMUST00000206200.2 |
||
| 3UTR TCA 72 bp | GGGCTAAGCTGGGGAGTGATGTCTGGAGACGAGGCATaGGGTCAGGAGCAAGAACTGCGTCTGAGGTCCAGA | + |
|
Preference number: 3 (lower is better) Translates to: GLSWGVMSGDEA*GQEQELRLRSR Trigger: TCTGGACCTCAGACGCAGTTCTTGCTCCTGACCTCATGCCTCGTCTCCAGACATCACTCCCCAGCTTAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GGCTCGTGGAAGCGGGTGAGGCTGCCAGGTGCTTGCTaGAGTGGTGTCTCTACACACGGGCAATTGAATCTT | + |
|
Preference number: 3 (lower is better) Translates to: GSWKRVRLPGAC*SGVSTHGQLNL Trigger: AAGATTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GGCGAGTTGCCCCGGGAGGGCCCTCTGACCTGCATTTaGTCTGCACACTCCAGAATGAAATCTGTACTCGTG | + |
|
Preference number: 3 (lower is better) Translates to: GELPREGPLTCI*SAHSRMKSVLV Trigger: CACGAGTACAGATTTCATTCTGGAGTGTGCAGACCAAATGCAGGTCAGAGGGCCCTCCCGGGGCAACTCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GGATTACTTTGTGAGGCTAGGCTTTGGTCAGGATCTTaGCGAGTTGCCCCGGGAGGGCCCTCTGACCTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: GLLCEARLWSGS*RVAPGGPSDLH Trigger: ATGCAGGTCAGAGGGCCCTCCCGGGGCAACTCGCCAAGATCCTGACCAAAGCCTAGCCTCACAAAGTAATCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | CCTGGGCTGCCTCAGGGACAGATGGCACTGGCTCAAAGACAGGGTAAGCTTCGGCAAGGGGTGGACTATTaGAAGACAGAGGAGCTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: PGLPQGQMALAQRQGKLRQGVDY*KTEELK Trigger: CTTCAGCTCCTCTGTCTTCAAATAGTCCACCCCTTG...CCGAAGCTTACCCTGTCTTTGAGCCAGTGCCATCTGTCCCTGAGGCAGCCCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR TCA 72 bp | AGCAGGGACTGTGGAGTCAGGTGGGTAGACTGGATGTaGATGCTGGCTCTGCCACAGACAGGCTGTGTGACT | + |
|
Preference number: 3 (lower is better) Translates to: SRDCGVRWVDWM*MLALPQTGCVT Trigger: AGTCACACAGCCTGTCTGTGGCAGAGCCAGCATTCACATCCAGTCTACCCACCTGACTCCACAGTCCCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GTTGCCCCGGGAGGGCCCTCTGACCTGCATTTGGTCTaGACACTCCAGAATGAAATCTGTACTCGTGGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: VAPGGPSDLHLV*TLQNEICTRGR Trigger: CCTACCACGAGTACAGATTTCATTCTGGAGTGTGCAGACCAAATGCAGGTCAGAGGGCCCTCCCGGGGCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | AGATGTCCCCAGACATTCCCTGTCTGGGACCTGCTCTaGCCCAGTAGTTTTGGACCCACAGCAAGCAGGATG | + |
|
Preference number: 3 (lower is better) Translates to: RCPQTFPVWDLL*PSSFGPTASRM Trigger: CATCCTGCTTGCTGTGGGTCCAAAACTACTGGGCCAGAGCAGGTCCCAGACAGGGAATGTCTGGGGACATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GTGGAAGCGGGTGAGGCTGCCAGGTGCTTGCTGGAGTaGTGTCTCTACACACGGGCAATTGAATCTTCACAC | + |
|
Preference number: 3 (lower is better) Translates to: VEAGEAARCLLE*CLYTRAIESSH Trigger: GTGTGAAGATTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | ACAGCTGCAGCCCACCTGCATGCCCAGCACAAAAAGTaGTACACTAGCAGGGACTGTGGAGTCAGGTGGGTA | + |
|
Preference number: 3 (lower is better) Translates to: TAAAHLHAQHKK*YTSRDCGVRWV Trigger: TACCCACCTGACTCCACAGTCCCTGCTAGTGTACCACTTTTTGTGCTGGGCATGCAGGTGGGCTGCAGCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | CCCAGCACTGGAGAGGCAGAGATAGACAGACCTCTGTaGGTTCAAGACTGGCCTGGTCTAGTGGGTTCATGG | + |
|
Preference number: 3 (lower is better) Translates to: PSTGEAEIDRPL*VQDWPGLVGSW Trigger: CCATGAACCCACTAGACCAGGCCAGTCTTGAACTCACAGAGGTCTGTCTATCTCTGCCTCTCCAGTGCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | TGGCACTCCAGAGAGGAATCTGAGGGACCCAGGGGCTaGGCTCAAGTCCCTTACCACTCAATGTCCATGTCA | + |
|
Preference number: 3 (lower is better) Translates to: WHSREESEGPRG*AQVPYHSMSMS Trigger: TGACATGGACATTGAGTGGTAAGGGACTTGAGCTCAGCCCCTGGGTCCCTCAGATTCCTCTCTGGAGTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GTAGGAGGGTGCATGGCTGCCAGCGATGGAAACACTTaGAGTCACTTGTCACCTCTTGTGCACACAGGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: VGGCMAASDGNT*SHLSPLVHTGL Trigger: AAGGCCTGTGTGCACAAGAGGTGACAAGTGACTGCAAGTGTTTCCATCGCTGGCAGCCATGCACCCTCCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | TACCTCCGGCTCCTAAGGGCTGACATCATAGGTGTGTaGCACCATGCCAGGCTAGGCGTTTGTATTCAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: YLRLLRADIIGV*HHARLGVCIQG Trigger: TCCCTGAATACAAACGCCTAGCCTGGCATGGTGGCACACACCTATGATGTCAGCCCTTAGGAGCCGGAGGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | CCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTaGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: PQLLAILEQAPP*SALGVHQYRLQ Trigger: CTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000106282.8 ENSMUST00000153277.3 ENSMUST00000206200.2 |
||
| 3UTR TCA 72 bp | TGTTTTGCTCACGAATGTATCTCCTGCACCAGCTGCTaGATCTGGCACACCACTGGGCACTCGATAACCCGC | + |
|
Preference number: 3 (lower is better) Translates to: CFAHECISCTSC*IWHTTGHSITR Trigger: GCGGGTTATCGAGTGCCCAGTGGTGTGCCAGATTCAGCAGCTGGTGCAGGAGATACATTCGTGAGCAAAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | CACCATTCACAAGCTGTGGCATTACCTTTTGCCCAGTaGTTCAGGGGTTGCTCGCTGCTCAAGTCTTGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: HHSQAVALPFAQ*FRGCSLLKSCW Trigger: CCAGCAAGACTTGAGCAGCGAGCAACCCCTGAAGCACTGGGCAAAAGGTAATGCCACAGCTTGTGAATGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GAGGAGGCCTCCCGAAGTCAGGGCTCAGATCTGTTTTaGTCACGAATGTATCTCCTGCACCAGCTGCTGAAT | + |
|
Preference number: 3 (lower is better) Translates to: EEASRSQGSDLF*SRMYLLHQLLN Trigger: ATTCAGCAGCTGGTGCAGGAGATACATTCGTGAGCAAAACAGATCTGAGCCCTGACTTCGGGAGGCCTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GACAGAGGAGCTGAAGAAGGCTCAGGCCCAAGGTGTTaGTCACTGGCTCTTAAGTCTGGGCATCTTTCTCTG | + |
|
Preference number: 3 (lower is better) Translates to: DRGAEEGSGPRC*SLALKSGHLSL Trigger: CAGAGAAAGATGCCCAGACTTAAGAGCCAGTGAGCAACACCTTGGGCCTGAGCCTTCTTCAGCTCCTCTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR CCA 72 bp | TGTACTCGTGGTAGGAGGGTGCATGGCTGCCAGCGATaGAAACACTTGCAGTCACTTGTCACCTCTTGTGCA | + |
|
Preference number: 3 (lower is better) Translates to: CTRGRRVHGCQR*KHLQSLVTSCA Trigger: TGCACAAGAGGTGACAAGTGACTGCAAGTGTTTCCATCGCTGGCAGCCATGCACCCTCCTACCACGAGTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | TATCTCCTGCACCAGCTGCTGAATCTGGCACACCACTaGGCACTCGATAACCCGCTGACAGACGAAAAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: YLLHQLLNLAHH*ALDNPLTDEKG Trigger: ACCTTTTTCGTCTGTCAGCGGGTTATCGAGTGCCCAGTGGTGTGCCAGATTCAGCAGCTGGTGCAGGAGATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | CGGTTTTCAGGCCTTTCTCTTGAAGGGCTCTCCTGGTaGGTCTCACGCCGGAATCCTCAGCTTCTAGCAATT | + |
|
Preference number: 3 (lower is better) Translates to: RFSGLSLEGLSW*VSRRNPQLLAI Trigger: AATTGCTAGAAGCTGAGGATTCCGGCGTGAGACTCACCAGGAGAGCCCTTCAAGAGAAAGGCCTGAAAACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
||
| 3UTR TCA 72 bp | CTTCTGGGAAGTCGCCAATCAGGAGCTGGGCCTAGATaGTGCTTCCTGTATCAATGGCACTCCAGAGAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: LLGSRQSGAGPR*CFLYQWHSREE Trigger: TTCCTCTCTGGAGTGCCATTGATACAGGAAGCATCATCTAGGCCCAGCTCCTGATTGGCGACTTCCCAGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | ATACTAGGCCCTCTCCATGGGCATCCCACTAGTGTCTaGCAGCAACTTCCTATCTCTCCATCTCCAGAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: ILGPLHGHPTSV*QQLPISPSPEE Trigger: CTCCTCTGGAGATGGAGAGATAGGAAGTTGCTGTCAGACACTAGTGGGATGCCCATGGAGAGGGCCTAGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | TGGACATTGGACATGACGTTCCCAAGCCCCAACCCCTaGTCTGCTAACTGGGCTAGGGATTACTTTGTGAGG | + |
|
Preference number: 3 (lower is better) Translates to: WTLDMTFPSPNP*SANWARDYFVR Trigger: CCTCACAAAGTAATCCCTAGCCCAGTTAGCAGATCAGGGGTTGGGGCTTGGGAACGTCATGTCCAATGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | CTGGGAACCTATACCCCATGTTCTCCAAGGGGACACTaGGAAGCCAAGGAGCTGACTAGGGTGGTATTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: LGTYTPCSPRGH*EAKELTRVVFG Trigger: TCCAAATACCACCCTAGTCAGCTCCTTGGCTTCTCAGTGTCCCCTTGGAGAACATGGGGTATAGGTTCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GAGCTGAAGAAGGCTCAGGCCCAAGGTGTTGCTCACTaGCTCTTAAGTCTGGGCATCTTTCTCTGGATGTTG | + |
|
Preference number: 3 (lower is better) Translates to: ELKKAQAQGVAH*LLSLGIFLWML Trigger: CAACATCCAGAGAAAGATGCCCAGACTTAAGAGCCAGTGAGCAACACCTTGGGCCTGAGCCTTCTTCAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR GCA 72 bp | AATGAAATCTGTACTCGTGGTAGGAGGGTGCATGGCTaGCAGCGATGGAAACACTTGCAGTCACTTGTCACC | + |
|
Preference number: 3 (lower is better) Translates to: NEICTRGRRVHG*QRWKHLQSLVT Trigger: GGTGACAAGTGACTGCAAGTGTTTCCATCGCTGGCAGCCATGCACCCTCCTACCACGAGTACAGATTTCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | TCTGGCCCAGTAGTTTTGGACCCACAGCAAGCAGGATaGATCCATAATTTAGGGACAGGGACAAGCAGAGAG | + |
|
Preference number: 3 (lower is better) Translates to: SGPVVLDPQQAG*IHNLGTGTSRE Trigger: CTCTCTGCTTGTCCCTGTCCCTAAATTATGGATCCATCCTGCTTGCTGTGGGTCCAAAACTACTGGGCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | AGAGATAGACAGACCTCTGTGAGTTCAAGACTGGCCTaGTCTAGTGGGTTCATGGCCAGCAGAGGAAGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: RDRQTSVSSRLA*SSGFMASRGRK Trigger: CTTTCTTCCTCTGCTGGCCATGAACCCACTAGACCAGGCCAGTCTTGAACTCACAGAGGTCTGTCTATCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTGCCACTCTTCTACACACGGGCAATaGAATCTTCACACCATTCAC | + |
|
Preference number: 3 (lower is better) Translates to: RSVGEAAAKVCRHLLCHSSTHGQ*NLHTIH Trigger: GTGAATGGTGTGAAGATTCAATTGCCCGTGTGTAGA...AGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | CCTTTGGTGGATGGCTGCCCTAAGTGTGTGAGGAGGTaGCCAAGTTGGCATAGGATCCACCATTTTGTGTAT | + |
|
Preference number: 3 (lower is better) Translates to: PLVDGCPKCVRR*PSWHRIHHFVY Trigger: ATACACAAAATGGTGGATCCTATGCCAACTTGGTCACCTCCTCACACACTTAGGGCAGCCATCCACCAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | AATGTTTGTTACTTGAAGTTCCCCAGTCACTTGGCATaGCAGCCCATGGCTTCTGGGAAGTCGCCAATCAGG | + |
|
Preference number: 3 (lower is better) Translates to: NVCYLKFPSHLA*QPMASGKSPIR Trigger: CCTGATTGGCGACTTCCCAGAAGCCATGGGCTGTCATGCCAAGTGACTGGGGAACTTCAAGTAACAAACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATaGAGACATCTTTTGTGCCACTCTCATAAGGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: VYRSVGEAAAKV*RHLLCHSHKVP Trigger: TGGAACCTTATGAGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GTTGCTCACTGGCTCTTAAGTCTGGGCATCTTTCTCTaGATGTTGGTCTCCTCGTGTACAGAGAGGACTCAT | + |
|
Preference number: 3 (lower is better) Translates to: VAHWLLSLGIFL*MLVSSCTERTH Trigger: ATGAGTCCTCTCTGTACACGAGGAGACCAACATCCAGAGAAAGATGCCCAGACTTAAGAGCCAGTGAGCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR GCA 72 bp | GGGGAGGCTGCAGCCAAAGTATGCAGACATCTTTTGTaGCACTCTCATAAGGTTCCAGTCACTTTGAAATGG | + |
|
Preference number: 3 (lower is better) Translates to: GEAAAKVCRHLL*HSHKVPVTLKW Trigger: CCATTTCAAAGTGACTGGAACCTTATGAGAGTGGCACAAAAGATGTCTGCATACTTTGGCTGCAGCCTCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | TTGTCAAGTCGGAGGCAAGAGGTTGATGAAAGCCCTTaGAATCACTCAGATGGCTCATCTGCCATGAGTTTC | + |
|
Preference number: 3 (lower is better) Translates to: LSSRRQEVDESP*NHSDGSSAMSF Trigger: GAAACTCATGGCAGATGAGCCATCTGAGTGATTCCAAGGGCTTTCATCAACCTCTTGCCTCCGACTTGACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | CCAGGCCAGTCTTCTGTAGCCCTGACATTAAAAATGTATGCGTGCTCCCCCGCCGGATCCGTAAACATTTaGTTATTCAACTACTACCCA | + |
|
Preference number: 3 (lower is better) Translates to: PGQSSVALTLKMYACSPAGSVNI*LFNYYP Trigger: TGGGTAGTAGTTGAATAACAAAATGTTTACGGATCC...GGCGGGGGAGCACGCATACATTTTTAATGTCAGGGCTACAGAAGACTGGCCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | GACTCGGGGAACAGAACGTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATAAGGTTCCAGTCACTTaGAAATGGTCTCCAAATAAA | + |
|
Preference number: 3 (lower is better) Translates to: DSGNRTFTGQSGRLQPKYKVPVT*KWSPNK Trigger: TTTATTTGGAGACCATTTCAAAGTGACTGGAACCTT...ATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAACGTTCTGTTCCCCGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | GCGATGGAAACACTTGCAGTCACTTGTCACCTCTTGTaGACACAGGCCTTCCTGCTATTTGAGTTGTATTTA | + |
|
Preference number: 3 (lower is better) Translates to: AMETLAVTCHLL*TQAFLLFELYL Trigger: TAAATACAACTCAAATAGCAGGAAGGCCTGTGTGCACAAGAGGTGACAAGTGACTGCAAGTGTTTCCATCGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | CAGAGGAGGTCACTTAGGCATGGAACCTTACTCTTCTaGATGCTATCCTTGTTCAAGATCAGAGATCTGAGA | + |
|
Preference number: 3 (lower is better) Translates to: QRRSLRHGTLLF*MLSLFKIRDLR Trigger: TCTCAGATCTCTGATCTTGAACAAGGATAGCATGCAGAAGAGTAAGGTTCCATGCCTAAGTGACCTCCTCTG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | GCATTAAATAAGTCCCACAAGTTGCAATATGTAGTACAGTTAGCTCTCTGTGGTGTCGGAGGCAAGAGGTaGATGAAAGCCCTTGGAATC | + |
|
Preference number: 3 (lower is better) Translates to: ALNKSHKLQYVVQLALCGVGGKR*MKALGI Trigger: GATTCCAAGGGCTTTCATCAACCTCTTGCCTCCGAC...ACCACAGAGAGCTAACTGTACTACATATTGCAACTTGTGGGACTTATTTAATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR TCA 72 bp | CAAATCAAAGAGGTAGAAAGTCGTGTAGCTAAGATTTaGACCACAGTCTGTCTGACTCCAAAGCCATGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: QIKEVESRVAKI*TTVCLTPKPCW Trigger: CCAGCATGGCTTTGGAGTCAGACAGACTGTGGTTCAAATCTTAGCTACACGACTTTCTACCTCTTTGATTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | CAGTCTTCTGTAGCCCTGACATTAAAAATGTATGCGTaGTCCCCCGCCTGTAGAATGATTCTCAGAAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: QSSVALTLKMYA*SPACRMILRNK Trigger: CTTATTTCTGAGAATCATTCTACAGGCGGGGGAGCACGCATACATTTTTAATGTCAGGGCTACAGAAGACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | AGATTAAATGCGAAAACAAACAACAGAACTTCGGAGTaGTCAGAGGAACGACTCACAGACAAGCGGTTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: RLNAKTNNRTSE*SEERLTDKRFC Trigger: ACAGAACCGCTTGTCTGTGAGTCGTTCCTCTGAGCACTCCGAAGTTCTGTTGTTTGTTTTCGCATTTAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
||
| 3UTR TCA 72 bp | GGGGTTTGTTTGTTTGTTTGTTTGTTGTGTTTTTCCTaGGGTGCTAGATACGAAATCCATGGCCCTTGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: GVCLFVCLLCFS*GARYEIHGPCS Trigger: TGAGCAAGGGCCATGGATTTCGTATCTAGCACCTCAGGAAAAACACAACAAACAAACAAACAAACAAACCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | CTCCACTGTGTTTTAAGTGTAAACAGACACAATGTATaGAACTCATTCTCAGAGTTCGGACTACAGGCTATG | + |
|
Preference number: 3 (lower is better) Translates to: LHCVLSVNRHNV*NSFSEFGLQAM Trigger: CATAGCCTGTAGTCCGAACTCTGAGAATGAGTTGCATACATTGTGTCTGTTTACACTTAAAACACAGTGGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | GTCCCTTACCACTCAATGTCCATGTCATCTCAGTTATaGACACAGAACATCTGCTTACCTTATTACTCAAAA | + |
|
Preference number: 3 (lower is better) Translates to: VPYHSMSMSSQL*TQNICLPYYSK Trigger: TTTTGAGTAATAAGGTAAGCAGATGTTCTGTGTCCATAACTGAGATGACATGGACATTGAGTGGTAAGGGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR CCA 72 bp | CATTTTGTTATTCAACTACTACCCAGTGACACACACTaGCAGTTTCTACCTTTTGAATATTTAAGGCTTGCA | + |
|
Preference number: 3 (lower is better) Translates to: HFVIQLLPSDTH*QFLPFEYLRLA Trigger: TGCAAGCCTTAAATATTCAAAAGGTAGAAACTGCCAGTGTGTGTCACTGGGTAGTAGTTGAATAACAAAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR-3UTR CAA 90 bp | GGATACACACGTTCACAACACTGTTCTTTATCCAGAATCTTTAAACAAGAAGAGATAAATGTTTGTTACTaGAAGTTCCCCAGTCACTTG | + |
|
Preference number: 3 (lower is better) Translates to: GYTRSQHCSLSRIFKQEEINVCY*KFPSHL Trigger: CAAGTGACTGGGGAACTTCAAGTAACAAACATTTAT...CTCTTCTTGTTTAAAGATTCTGGATAAAGAACAGTGTTGTGAACGTGTGTATCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| 3UTR GCA 72 bp | ATTCTCAGAAATAAGATAAACATGAATGCGTTCACATaGATCGTGTGTTTTATACAAATCCCAGGGTGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: ILRNKINMNAFT*IVCFIQIPGCS Trigger: AGAACACCCTGGGATTTGTATAAAACACACGATGCATGTGAACGCATTCATGTTTATCTTATTTCTGAGAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| CDS-3UTR CCA 90 bp | GGGGGCGCCCTCCGAGTCCTCTGTGTCACCCTGGGCTGCCTCAGGGACAGATGGCCCTGGATCTCCTCCTaGGGATCCACCACAGGCACC | + |
|
Preference number: 4 (lower is better) Translates to: GGALRVLCVTLGCLRDRWPWISS*GSTTGT Trigger: GGTGCCTGTGGTGGATCCCCAGGAGGAGATCCAGGG...CCATCTGTCCCTGAGGCAGCCCAGGGTGACACAGAGGACTCGGAGGGCGCCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000207019.2 |
||
| 3UTR CAA 72 bp | GACAGGGACAAGCAGAGAGCTGGCTGCCGACCTCCATaGCTGGCTGCGGGTGCCCAGCTCCAAAGCCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: DRDKQRAGCRPP*LAAGAQLQSPL Trigger: GAGAGGGCTTTGGAGCTGGGCACCCGCAGCCAGCAATGGAGGTCGGCAGCCAGCTCTCTGCTTGTCCCTGTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
||
| CDS-3UTR GCA 90 bp | AACAGGCTCCTCCTTGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTGCCACGGGATCTCTCTaGCCCGCCTCCTGCCCGCCG | + |
|
Preference number: 4 (lower is better) Translates to: NRLLLGQLWGFISTACRCATGSL*PASCPP Trigger: CGGCGGGCAGGAGGCGGGGCAGAGAGATCCCGTGGC...ACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | CCCTTGTGTGGTGGAACCCGCTCACCTCCCCTTCCCTaGTGGTATCGTCCTGGGTGCCCTCTGGGCCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: PLCGGTRSPPLP*WYRPGCPLGLA Trigger: AGCAAGGCCCAGAGGGCACCCAGGACGATACCACAAGGGAAGGGGAGGTGAGCGGGTTCCACCACACAAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR GCA 90 bp | GGGCTCGGTTTTCAGGCCTTTCTCTTGAAGGGCTCTCCTGGTGAGTCTCACGCCCCCCTCTGGGACTGGTaGCCCTACCACGTCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: GLGFQAFLLKGSPGESHAPLWDW*PYHVSP Trigger: GGGAGAGACGTGGTAGGGGCACCAGTCCCAGAGGGG...GGCGTGAGACTCACCAGGAGAGCCCTTCAAGAGAAAGGCCTGAAAACCGAGCCC 62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | CACTTCCGGGAGCTCTGGGTTCCGGAACCGTGGAAGTaGGCCGAGAATTTGTCCGGAGGCCTCTCCTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: HFRELWVPEPWK*AENLSGGLSWG Trigger: TCCCCAGGAGAGGCCTCCGGACAAATTCTCGGCCAACTTCCACGGTTCCGGAACCCAGAGCTCCCGGAAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | CTGGCAGGCGGAGGAACCCCAATCCAGGTGAAGGGCTaGGATTCTGTCCCCACAGGACCTGTGCAGCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LAGGGTPIQVKG*DSVPTGPVQPW Trigger: CCAAGGCTGCACAGGTCCTGTGGGGACAGAATCCAAGCCCTTCACCTGGATTGGGGTTCCTCCGCCTGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR CCA 90 bp | AACAGGCTCCTCCTTGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCTCCCCCTCTGGGACTaGTGCCCCTACCACGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: NRLLLGQLWGFISTACRCLPLWD*CPYHVS Trigger: AGAGACGTGGTAGGGGCACCAGTCCCAGAGGGGGAG...ACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | GGGCTTGGATTCTGTCCCCACAGGACCTGTGCAGCCTaGGACATTGGACATGACGTTCCCAAGCCCCAACCC | + |
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Preference number: 4 (lower is better) Translates to: GLGFCPHRTCAA*DIGHDVPKPQP Trigger: GGGTTGGGGCTTGGGAACGTCATGTCCAATGTCCAAGGCTGCACAGGTCCTGTGGGGACAGAATCCAAGCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR TCA 90 bp | CAGGAGGCAGGCGGCTTCTCAGGGGTCAGGGGCATTTGGACAGATGCGCTTGAGCCACAGGCACCCACTTaGAGATTCGAAGGGAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: QEAGGFSGVRGIWTDALEPQAPT*RFEGKC Trigger: ACACTTCCCTTCGAATCTTCAAGTGGGTGCCTGTGG...CTCAAGCGCATCTGTCCAAATGCCCCTGACCCCTGAGAAGCCGCCTGCCTCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207019.2 |
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| 3UTR CAA 72 bp | CTAGCAATTCTGGAACAGGCTCCTCCTTGGTCAGCTTaGGGGGTTCATCAGTACCGCCTGCAGGTGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: LAILEQAPPWSA*GVHQYRLQVSP Trigger: GGGGGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000106282.8 ENSMUST00000153277.3 ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | CATAGGCTCGTGGAAGCGGGTGAGGCTGCCAGGTGCTaGCTGGAGTGGTGTCTCTACACACGGGCAATTGAA | + |
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Preference number: 4 (lower is better) Translates to: HRLVEAGEAARC*LEWCLYTRAIE Trigger: TTCAATTGCCCGTGTGTAGAGACACCACTCCAGCAAGCACCTGGCAGCCTCACCCGCTTCCACGAGCCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TTTGTGAGGCTAGGCTTTGGTCAGGATCTTGGCGAGTaGCCCCGGGAGGGCCCTCTGACCTGCATTTGGTCT | + |
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Preference number: 4 (lower is better) Translates to: FVRLGFGQDLGE*PREGPLTCIWS Trigger: AGACCAAATGCAGGTCAGAGGGCCCTCCCGGGGCAACTCGCCAAGATCCTGACCAAAGCCTAGCCTCACAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR TCA 90 bp | GGGCTCGGTTTTCAGGCCTTTCTCTTGAAGGGCTCTCCTGGTGAGTCTCACGCCCCACAGGCACCCACTTaGAGATTCGAAGGGAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: GLGFQAFLLKGSPGESHAPQAPT*RFEGKC Trigger: ACACTTCCCTTCGAATCTTCAAGTGGGTGCCTGTGG...GGCGTGAGACTCACCAGGAGAGCCCTTCAAGAGAAAGGCCTGAAAACCGAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TGCCCAGTGCTTCAGGGGTTGCTCGCTGCTCAAGTCTaGCTGGTAGGGCCCCTCACCAGTGTAGATACTGTA | + |
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Preference number: 4 (lower is better) Translates to: CPVLQGLLAAQV*LVGPLTSVDTV Trigger: TACAGTATCTACACTGGTGAGGGGCCCTACCAGCAAGACTTGAGCAGCGAGCAACCCCTGAAGCACTGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | GGTAGGAGGGTGCATGGCTGCCAGCGATGGAAACACTaGCAGTCACTTGTCACCTCTTGTGCACACAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: GRRVHGCQRWKH*QSLVTSCAHRP Trigger: AGGCCTGTGTGCACAAGAGGTGACAAGTGACTGCAAGTGTTTCCATCGCTGGCAGCCATGCACCCTCCTACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TGGCGAGTTGCCCCGGGAGGGCCCTCTGACCTGCATTaGGTCTGCACACTCCAGAATGAAATCTGTACTCGT | + |
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Preference number: 4 (lower is better) Translates to: WRVAPGGPSDLH*VCTLQNEICTR Trigger: ACGAGTACAGATTTCATTCTGGAGTGTGCAGACCAAATGCAGGTCAGAGGGCCCTCCCGGGGCAACTCGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR GCA 90 bp | GACTCGGGGAACAGAACGTTTACAGGTCAGTCGGGGAGGCTGCAGCCAAAGTATGGCTCAGCACCCTTTTaGAATGAACCTCCTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: DSGNRTFTGQSGRLQPKYGSAPF*NEPPPG Trigger: CCCAGGAGGAGGTTCATTGCAAAAGGGTGCTGAGCC...ATACTTTGGCTGCAGCCTCCCCGACTGACCTGTAAACGTTCTGTTCCCCGAGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | GGAGGAGGCCTCCCGAAGTCAGGGCTCAGATCTGTTTaGCTCACGAATGTATCTCCTGCACCAGCTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: GGGLPKSGLRSV*LTNVSPAPAAE Trigger: TTCAGCAGCTGGTGCAGGAGATACATTCGTGAGCAAAACAGATCTGAGCCCTGACTTCGGGAGGCCTCCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | GCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTaGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ASASSNSGTGSS*VSFGGSSVPPA Trigger: TGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| 3UTR CAA 72 bp | TCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTaGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: SSASSNSGTGSS*VSFGGSSVPPA Trigger: TGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | TGTGGTACAGGAGACACTACCTCCTGGCCAAGTGAGTaGTCAAGTCGGAGGCAAGAGGTTGATGAAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: CGTGDTTSWPSE*SSRRQEVDESP Trigger: AGGGCTTTCATCAACCTCTTGCCTCCGACTTGACAACTCACTTGGCCAGGAGGTAGTGTCTCCTGTACCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TGCATGGCTGCCAGCGATGGAAACACTTGCAGTCACTaGTCACCTCTTGTGCACACAGGCCTTCCTGCTATT | + |
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Preference number: 4 (lower is better) Translates to: CMAASDGNTCSH*SPLVHTGLPAI Trigger: AATAGCAGGAAGGCCTGTGTGCACAAGAGGTGACAAGTGACTGCAAGTGTTTCCATCGCTGGCAGCCATGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR CCA 90 bp | CAGGCTCCTCCTTGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCCTCAGAATGGAAACTCTaGTTGCTGTTCTCATCATTG | + |
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Preference number: 4 (lower is better) Translates to: QAPPWSALGVHQYRLQVSSEWKL*LLFSSL Trigger: CAATGATGAGAACAGCAACCAGAGTTTCCATTCTGA...GGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | CATTCCCTGTCTGGGACCTGCTCTGGCCCAGTAGTTTaGGACCCACAGCAAGCAGGATGGATCCATAATTTA | + |
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Preference number: 4 (lower is better) Translates to: HSLSGTCSGPVV*DPQQAGWIHNL Trigger: TAAATTATGGATCCATCCTGCTTGCTGTGGGTCCAAAACTACTGGGCCAGAGCAGGTCCCAGACAGGGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | CCTGGCCAAGTGAGTTGTCAAGTCGGAGGCAAGAGGTaGATGAAAGCCCTTGGAATCACTCAGATGGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: PGQVSCQVGGKR*MKALGITQMAH Trigger: ATGAGCCATCTGAGTGATTCCAAGGGCTTTCATCAACCTCTTGCCTCCGACTTGACAACTCACTTGGCCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | AATCTTCACACCATTCACAAGCTGTGGCATTACCTTTaGCCCAGTGCTTCAGGGGTTGCTCGCTGCTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: NLHTIHKLWHYL*PSASGVARCSS Trigger: ACTTGAGCAGCGAGCAACCCCTGAAGCACTGGGCAAAAGGTAATGCCACAGCTTGTGAATGGTGTGAAGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR TCA 90 bp | AGTCTCACGCCGGAATCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTGAGCACCCTTTTGCAATaGACCTTCAGAATGGAAACT | + |
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Preference number: 4 (lower is better) Translates to: SLTPESSASSNSGTGSSLSTLLQ*TFRMET Trigger: AGTTTCCATTCTGAAGGTTCATTGCAAAAGGGTGCT...CAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGATTCCGGCGTGAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206200.2 |
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| 3UTR CAA 72 bp | CGGACTTTGTCTGTTCAGAATTCCTTGCTGACATTATaGGGAAACCTGGGATTGTTGCTGCTGCTGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RTLSVQNSLLTL*GNLGLLLLLVV Trigger: CACCACCAGCAGCAGCAACAATCCCAGGTTTCCCAATAATGTCAGCAAGGAATTCTGAACAGACAAAGTCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TCACTTATTCACCGTCCCTGCTCAGCCCCACGGACTTaGTCTGTTCAGAATTCCTTGCTGACATTATTGGGA | + |
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Preference number: 4 (lower is better) Translates to: SLIHRPCSAPRT*SVQNSLLTLLG Trigger: TCCCAATAATGTCAGCAAGGAATTCTGAACAGACAAAGTCCGTGGGGCTGAGCAGGGACGGTGAATAAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | CACTGGCTCTTAAGTCTGGGCATCTTTCTCTGGATGTaGGTCTCCTCGTGTACAGAGAGGACTCATGATAGA | + |
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Preference number: 4 (lower is better) Translates to: HWLLSLGIFLWM*VSSCTERTHDR Trigger: TCTATCATGAGTCCTCTCTGTACACGAGGAGACCAACATCCAGAGAAAGATGCCCAGACTTAAGAGCCAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| CDS-3UTR TCA 90 bp | CTGGGCATCTTTCTCTGGATGTTGGTCTCCTCGTGTACAGAGAGGACTCATGATCAAGATCGGTATGGCTaGCAGGAGATGATAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: LGIFLWMLVSSCTERTHDQDRYG*QEMITE Trigger: TTCTGTTATCATCTCCTGTCAGCCATACCGATCTTG...ATCATGAGTCCTCTCTGTACACGAGGAGACCAACATCCAGAGAAAGATGCCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153277.3 |
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| 3UTR CAA 72 bp | CCAGAGGAGAGAGGTAAACACAGATCACTTCACAGTTaGGAAAGCATTTCCCTCTACCCTTCATCCTCACAA | + |
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Preference number: 4 (lower is better) Translates to: PEERGKHRSLHS*ESISLYPSSSQ Trigger: TTGTGAGGATGAAGGGTAGAGGGAAATGCTTTCCAAACTGTGAAGTGATCTGTGTTTACCTCTCTCCTCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | AATTCCTTGCTGACATTATTGGGAAACCTGGGATTGTaGCTGCTGCTGGTGGTGATTTTGTCTGCTTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: NSLLTLLGNLGL*LLLVVILSAFV Trigger: AACAAAAGCAGACAAAATCACCACCAGCAGCAGCAACAATCCCAGGTTTCCCAATAATGTCAGCAAGGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TATGACAGGAGTGCTGCATTAAATAAGTCCCACAAGTaGCAATATGTAGTACAGTTAGCTCTCTGTGGTACA | + |
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Preference number: 4 (lower is better) Translates to: YDRSAALNKSHK*QYVVQLALCGT Trigger: TGTACCACAGAGAGCTAACTGTACTACATATTGCAACTTGTGGGACTTATTTAATGCAGCACTCCTGTCATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| 3UTR CAA 72 bp | TCCAGAATCTTTAAACAAGAAGAGGGGTTTGTTTGTTaGTTTGTTTGTTGTGTTTTTCCTGAGGTGCTAGAT | + |
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Preference number: 4 (lower is better) Translates to: SRIFKQEEGFVC*FVCCVFPEVLD Trigger: ATCTAGCACCTCAGGAAAAACACAACAAACAAACAAACAAACAAACCCCTCTTCTTGTTTAAAGATTCTGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR CAA 90 bp | AGGCTCCTCCTTGGTCAGCTTTGGGGGTTCATCAGTACCGCCTGCAGGTGTCCCCTTCTGGGGGTCCAGTaGGTGATCCAGGGCGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: RLLLGQLWGFISTACRCPLLGVQ*VIQGGW Trigger: CCAGCCGCCCTGGATCACCAACTGGACCCCCAGAAG...GGGACACCTGCAGGCGGTACTGATGAACCCCCAAAGCTGACCAAGGAGGAGCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000106282.8 ENSMUST00000153277.3 ENSMUST00000206200.2 |
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| CDS-3UTR CAA 90 bp | AGTCTCACGCCGGAATCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTGCTTCTGGGGGTCCAGTaGGTGATCCAGGGCGGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SLTPESSASSNSGTGSSLLLGVQ*VIQGGW Trigger: CCAGCCGCCCTGGATCACCAACTGGACCCCCAGAAG...CAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGATTCCGGCGTGAGACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106282.8 ENSMUST00000206200.2 |
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| CDS-3UTR CAA 90 bp | AGTCTCACGCCGGAATCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTGACCACAGGCACCCACTaGAAGATTCGAAGGGAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: SLTPESSASSNSGTGSSLTTGTH*KIRREV Trigger: CACTTCCCTTCGAATCTTCAAGTGGGTGCCTGTGGT...CAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGATTCCGGCGTGAGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106282.8 |
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| CDS-3UTR CAA 90 bp | ATGGCACTGGCTCAAAGACAGGGTAAGCTTCGGGGGCCTCAGCTTCTAGCAATTACCACAGGCACCCACTaGAAGATTCGAAGGGAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: MALAQRQGKLRGPQLLAITTGTH*KIRREV Trigger: CACTTCCCTTCGAATCTTCAAGTGGGTGCCTGTGGT...AATTGCTAGAAGCTGAGGCCCCCGAAGCTTACCCTGTCTTTGAGCCAGTGCCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000207019.2 |
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| CDS-3UTR CAA 90 bp | TCACGCCGGAATCCTCAGCTTCTAGCAATTCTGGAACAGGCTCCTCCTTGGTCAGAATGGAAACTCTGGTaGCTGTTCTCATCATTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SRRNPQLLAILEQAPPWSEWKLW*LFSSLR Trigger: TCTCAATGATGAGAACAGCAACCAGAGTTTCCATTC...TGACCAAGGAGGAGCCTGTTCCAGAATTGCTAGAAGCTGAGGATTCCGGCGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206200.2 |
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| CDS CAA 72 bp | CCTTCAGAATGGAAACTCTGGTTGCTGTTCTCATCATaGAGATCCAGTAGGATGAGGGGGCCTCCCCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: PSEWKLWLLFSS*RSSRMRGPPPL Trigger: CAGAGGGGGAGGCCCCCTCATCCTACTGGATCTCAATGATGAGAACAGCAACCAGAGTTTCCATTCTGAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000061468.9 ENSMUST00000205977.2 ENSMUST00000206200.2 |
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