Pregenerated sensors for BCCIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030983Ensembl transcript IDs: ENSMUST00000033282.5
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGGGAGCTGCTGGTGCATaGGCAGGGCAATCTGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGGAAGA*AGQSVE Trigger: CTCCACAGATTGCCCTGCCCATGCACCAGCAGCTCC...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR TCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGATCAGTGCCCCCTGCTaGAGGCTGTCCTGCCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGISAPC*RLSCLF Trigger: AAAGAGGCAGGACAGCCTTCAGCAGGGGGCACTGAT...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGAGTTCTTTCTGGAGCTaGTGGTGCATGGGCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLSSFWS*WCMGRA Trigger: TGCCCTGCCCATGCACCAGCAGCTCCAGAAAGAACT...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR TCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGCCTGCACCGAGTAGCTaGACTTCAAGATTGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGPAPSS*TSRLPS Trigger: AGAAGGCAATCTTGAAGTTCAGCTACTCGGTGCAGG...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGATTTGCAAACATCAGTaGCCCCTGCTGAAGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLICKHQ*PLLKAV Trigger: GACAGCCTTCAGCAGGGGGCACTGATGTTTGCAAAT...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGCTCTTCCTCTGCATTTaGAAACATCAGTGCCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLLFLCI*KHQCPL Trigger: CAGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAG...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGGGCCCACAGGCTTGCTaGTGTCATTCAAAAGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGGPQAC*CHSKAC Trigger: ACAAGCTTTTGAATGACACCAGCAAGCCTGTGGGCC...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CCA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGGGGCAGGGCAATCTGTaGAGGGACGTTAATGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLGQGNL*RDVNES Trigger: AGATTCATTAACGTCCCTCCACAGATTGCCCTGCCC...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGTGTTCAACCATGCTCTaGTCACAGGTCTTCTCACAG | + |
|
Preference number: 4 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLCSTML*SQVFSQ Trigger: CTGTGAGAAGACCTGTGAGCAGAGCATGGTTGAACA...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTTTCTGGAGCTGCTGGTaGATGGGCAGGGCAATCTGT | + |
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Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCFWSCW*MGRAIC Trigger: ACAGATTGCCCTGCCCATGCACCAGCAGCTCCAGAA...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CCA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGATCACACTCCCAATGTaGTTCTGCTGCATCAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLITLPM*FCCIRR Trigger: TCTCCTGATGCAGCAGAACCACATTGGGAGTGTGAT...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTTCTTTCTGGAGCTGCTaGTGCATGGGCAGGGCAATC | + |
|
Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCSFWSC*CMGRAI Trigger: GATTGCCCTGCCCATGCACCAGCAGCTCCAGAAAGA...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR TCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGATTTGTTCAGCACACTaGGTCCCCTTTCTTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGICSAH*VPFLSV Trigger: GACTGAAAGAAAGGGGACTCAGTGTGCTGAACAAAT...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTTCAGACAGTTCTTTCTaGAGCTGCTGGTGCATGGGC | + |
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Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCSDSSF*SCWCMG Trigger: GCCCATGCACCAGCAGCTCCAGAAAGAACTGTCTGA...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR TCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGGCCATAATCGTTATCTaGGATGGAATAGGCTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGAIIVI*DGIGFK Trigger: TTTGAAGCCTATTCCATCTCAGATAACGATTATGGC...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTTGTCCTGCCTCTTTCTaGAACTGGACTTTCCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCCPASF*NWTFLL Trigger: AAGCAGGAAAGTCCAGTTCCAGAAAGAGGCAGGACA...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR TCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTTTCAGGGTTTCCATaGTCTCATTCATCCTGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCLSGFP*SHSSCR Trigger: ACGACAGGATGAATGAGATCATGGAAACCCTGAAAG...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGTCTGAAACATCTGTTTaGTTAATCACACTCCCAATG | + |
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Preference number: 4 (lower is better) Translates to: SSMGFLVITHKQACHCLGSETSV*LITLPM Trigger: CATTGGGAGTGTGATTAAGCAAACAGATGTTTCAGA...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTGAAGAACTCTTCCTCTaGATTTGCAAACATCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCEELFL*ICKHQC Trigger: GCACTGATGTTTGCAAATGCAGAGGAAGAGTTCTTC...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR GCA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTGGAACTGGACTTTCCTaGTTCCATAAATGTCTTACT | + |
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Preference number: 4 (lower is better) Translates to: SISSMGFLVITHKQACHCGTGLS*FHKCLT Trigger: AGTAAGACATTTATGGAAGCAGGAAAGTCCAGTTCC...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| 3UTR CAA 72 bp | AATAATGAGTTTTTCAGTATCTCTTCAATGGGTTTCTaGGTAATTACACATAAACAAGCCTGTCACTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: NNEFFSISSMGF*VITHKQACHCL Trigger: CAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACTGAAAAACTCATTATT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS TCA 90 bp | ATCTGCCTCCCAGACGAGTGTCGCTCTCCCCCTGCACCGAGTAGCTaGACTTCAAGATTGCCTTCTCATAGAAGAACTCTTCCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: ICLPDECRSPPAPSS*TSRLPSHRRTLPLH Trigger: ATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATCTTGAAGTTCAGCTACTCGGTGCAGGGGGAGAGCGACACTCGTCTGGGAGGCAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 90 bp | TTGTTGGTTCTTCGCGCCTCAGACAGTTCTTTCTGGAGCTGCTGGTaGATGGGCAGGGCAATCTGTGGAGGGACGTTAATGAATCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: LLVLRASDSSFWSCW*MGRAICGGTLMNLS Trigger: TGAAAGATTCATTAACGTCCCTCCACAGATTGCCCTGCCCATGCACCAGCAGCTCCAGAAAGAACTGTCTGAGGCGCGAAGAACCAACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 90 bp | TCTTCTGAAACATCTGTTTGCTTAATCACACTCCCAATGTGGTTCTaGTGCATCAGGAGATTCGTCAGCTCGGCAGTGTTCACGGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SSETSVCLITLPMWF*CIRRFVSSAVFTGA Trigger: AGCCCCCGTGAACACTGCCGAGCTGACGAATCTCCTGATGCAGCAGAACCACATTGGGAGTGTGATTAAGCAAACAGATGTTTCAGAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 90 bp | TCTGAAACATCTGTTTGCTTAATCACACTCCCAATGTGGTTCTGCTaGATCAGGAGATTCGTCAGCTCGGCAGTGTTCACGGGGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SETSVCLITLPMWFC*IRRFVSSAVFTGAF Trigger: AAAAGCCCCCGTGAACACTGCCGAGCTGACGAATCTCCTGATGCAGCAGAACCACATTGGGAGTGTGATTAAGCAAACAGATGTTTCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 90 bp | GTAGCTGAACTTCAAGATTGCCTTCTCATAGAAGAACTCTTCCTCTaGATTTGCAAACATCAGTGCCCCCTGCTGAAGGCTGTCCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: VAELQDCLLIEELFL*ICKHQCPLLKAVLP Trigger: AGGCAGGACAGCCTTCAGCAGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATCTTGAAGTTCAGCTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 90 bp | GAACTTCAAGATTGCCTTCTCATAGAAGAACTCTTCCTCTGCATTTaGAAACATCAGTGCCCCCTGCTGAAGGCTGTCCTGCCTCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: ELQDCLLIEELFLCI*KHQCPLLKAVLPLS Trigger: AGAAAGAGGCAGGACAGCCTTCAGCAGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATCTTGAAGTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CCA 90 bp | TCACTGTCTTCTGAAACATCTGTTTGCTTAATCACACTCCCAATGTaGTTCTGCTGCATCAGGAGATTCGTCAGCTCGGCAGTGTTCACG | + |
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Preference number: 5 (lower is better) Translates to: SLSSETSVCLITLPM*FCCIRRFVSSAVFT Trigger: CGTGAACACTGCCGAGCTGACGAATCTCCTGATGCAGCAGAACCACATTGGGAGTGTGATTAAGCAAACAGATGTTTCAGAAGACAGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CCA 90 bp | CATAAATGTCTTACTAATCAGCAGGTAGAAGCAGCATTTCCCACATaGCTTGTTGGTTCTTCGCGCCTCAGACAGTTCTTTCTGGAGCTG | + |
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Preference number: 5 (lower is better) Translates to: HKCLTNQQVEAAFPT*LVGSSRLRQFFLEL Trigger: CAGCTCCAGAAAGAACTGTCTGAGGCGCGAAGAACCAACAAGCCATGTGGGAAATGCTGCTTCTACCTGCTGATTAGTAAGACATTTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CAA 90 bp | TCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTCTGGGGAGAAGGCCCACAGGCTaGCTGGTGTCATTCAAAAGC | + |
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Preference number: 5 (lower is better) Translates to: SSMGFLVITHKQACHCLGRRPTG*LVSFKS Trigger: GCTTTTGAATGACACCAGCAAGCCTGTGGGCCTTCT...CCCCAGACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CAA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGCATTTCCCACATGGCTaGTTGGTTCTTCGCGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLHFPHG*LVLRAS Trigger: TGAGGCGCGAAGAACCAACAAGCCATGTGGGAAATG...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CAA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGACTCTTCCTCTGCATTaGCAAACATCAGTGCCCCCT | + |
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Preference number: 5 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLTLPLH*QTSVPP Trigger: AGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAGT...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 90 bp | TTGCTGGTGTCATTCAAAAGCTTGTCCAGCTGTTCAACCATGCTCTaGTCACAGGTCTTCTCACAGAAGCTTAGAACCAACTCTTTAATT | + |
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Preference number: 5 (lower is better) Translates to: LLVSFKSLSSCSTML*SQVFSQKLRTNSLI Trigger: AATTAAAGAGTTGGTTCTAAGCTTCTGTGAGAAGACCTGTGAGCAGAGCATGGTTGAACAGCTGGACAAGCTTTTGAATGACACCAGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CAA 90 bp | TGTGTCACAGACACATGGAACAGAACCCTACTTTTTGTAGAGGACTTGAATCTGAACCAACTCTTTAATTaGTTCAGCACACTGAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: CVTDTWNRTLLFVEDLNLNQLFN*FSTLSP Trigger: GGGACTCAGTGTGCTGAACAAATTAAAGAGTTGGTT...CAGATTCAAGTCCTCTACAAAAAGTAGGGTTCTGTTCCATGTGTCTGTGACACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS-3UTR CAA 90 bp | AGTATCTCTTCAATGGGTTTCTTGGTAATTACACATAAACAAGCCTGTCACTGTGTGTCATTCAAAAGCTaGTCCAGCTGTTCAACCATG | + |
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Preference number: 5 (lower is better) Translates to: SISSMGFLVITHKQACHCVSFKS*SSCSTM Trigger: CATGGTTGAACAGCTGGACAAGCTTTTGAATGACAC...ACAGTGACAGGCTTGTTTATGTGTAATTACCAAGAAACCCATTGAAGAGATACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS TCA 72 bp | TCCTCCTCCCGCTGGCCCGGGGCTCCCAGCGGCCGCTaGATTCCATTTCCCACCGCTCGCTTCTTAGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: SSSRWPGAPSGR*IPFPTARFLAL Trigger: TAAGGCTAAGAAGCGAGCGGTGGGAAATGGAATTCAGCGGCCGCTGGGAGCCCCGGGCCAGCGGGAGGAGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 72 bp | GCAAAGGCGTCATCGGAACATCATCGAAGGACCATCTaGCTCCCAGACGAGTGTCGCTCTCCCCCTGCACCG | + |
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Preference number: 6 (lower is better) Translates to: AKASSEHHRRTI*LPDECRSPPAP Trigger: CGGTGCAGGGGGAGAGCGACACTCGTCTGGGAGGCAGATGGTCCTTCGATGATGTTCCGATGACGCCTTTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CAA 72 bp | AGAAGGCCCACAGGCTTGCTGGTGTCATTCAAAAGCTaGTCCAGCTGTTCAACCATGCTCTGCTCACAGGTC | + |
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Preference number: 6 (lower is better) Translates to: RRPTGLLVSFKS*SSCSTMLCSQV Trigger: GACCTGTGAGCAGAGCATGGTTGAACAGCTGGACAAGCTTTTGAATGACACCAGCAAGCCTGTGGGCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CAA 90 bp | TCACTTAGCAGAAGGCCCACAGGCTTGCTGGTGTCATTCAAAAGCTaGTCCAGCTGTTCAACCATGCTCTGCTCACAGGTCTTCTCACAG | + |
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Preference number: 6 (lower is better) Translates to: SLSRRPTGLLVSFKS*SSCSTMLCSQVFSQ Trigger: CTGTGAGAAGACCTGTGAGCAGAGCATGGTTGAACAGCTGGACAAGCTTTTGAATGACACCAGCAAGCCTGTGGGCCTTCTGCTAAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS TCA 72 bp | CCAGACGAGTGTCGCTCTCCCCCTGCACCGAGTAGCTaGACTTCAAGATTGCCTTCTCATAGAAGAACTCTT | + |
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Preference number: 6 (lower is better) Translates to: PDECRSPPAPSS*TSRLPSHRRTL Trigger: AAGAGTTCTTCTATGAGAAGGCAATCTTGAAGTTCAGCTACTCGGTGCAGGGGGAGAGCGACACTCGTCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CCA 72 bp | TCAGCAGGTAGAAGCAGCATTTCCCACATGGCTTGTTaGTTCTTCGCGCCTCAGACAGTTCTTTCTGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: SAGRSSISHMAC*FFAPQTVLSGA Trigger: AGCTCCAGAAAGAACTGTCTGAGGCGCGAAGAACCAACAAGCCATGTGGGAAATGCTGCTTCTACCTGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 72 bp | TCTGTTTGCTTAATCACACTCCCAATGTGGTTCTGCTaGATCAGGAGATTCGTCAGCTCGGCAGTGTTCACG | + |
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Preference number: 6 (lower is better) Translates to: SVCLITLPMWFC*IRRFVSSAVFT Trigger: CGTGAACACTGCCGAGCTGACGAATCTCCTGATGCAGCAGAACCACATTGGGAGTGTGATTAAGCAAACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 72 bp | GATTGCCTTCTCATAGAAGAACTCTTCCTCTGCATTTaGAAACATCAGTGCCCCCTGCTGAAGGCTGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: DCLLIEELFLCI*KHQCPLLKAVL Trigger: CAGGACAGCCTTCAGCAGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 72 bp | GCTCTCCCCCTGCACCGAGTAGCTGAACTTCAAGATTaGCTTCTCATAGAAGAACTCTTCCTCTGCATTTGC | + |
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Preference number: 6 (lower is better) Translates to: ALPLHRVAELQD*LLIEELFLCIC Trigger: GCAAATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATCTTGAAGTTCAGCTACTCGGTGCAGGGGGAGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CAA 90 bp | GGAGGGACGTTAATGAATCTTTCACTTAGCAGAAGGCCCACAGGCTaGCTGGTGTCATTCAAAAGCTTGTCCAGCTGTTCAACCATGCTC | + |
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Preference number: 6 (lower is better) Translates to: GGTLMNLSLSRRPTG*LVSFKSLSSCSTML Trigger: GAGCATGGTTGAACAGCTGGACAAGCTTTTGAATGACACCAGCAAGCCTGTGGGCCTTCTGCTAAGTGAAAGATTCATTAACGTCCCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 72 bp | ACATCTGTTTGCTTAATCACACTCCCAATGTGGTTCTaGTGCATCAGGAGATTCGTCAGCTCGGCAGTGTTC | + |
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Preference number: 6 (lower is better) Translates to: TSVCLITLPMWF*CIRRFVSSAVF Trigger: GAACACTGCCGAGCTGACGAATCTCCTGATGCAGCAGAACCACATTGGGAGTGTGATTAAGCAAACAGATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CAA 72 bp | AGATTGCCTTCTCATAGAAGAACTCTTCCTCTGCATTaGCAAACATCAGTGCCCCCTGCTGAAGGCTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: RLPSHRRTLPLH*QTSVPPAEGCP Trigger: AGGACAGCCTTCAGCAGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS GCA 72 bp | CTTCAAGATTGCCTTCTCATAGAAGAACTCTTCCTCTaGATTTGCAAACATCAGTGCCCCCTGCTGAAGGCT | + |
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Preference number: 6 (lower is better) Translates to: LQDCLLIEELFL*ICKHQCPLLKA Trigger: AGCCTTCAGCAGGGGGCACTGATGTTTGCAAATGCAGAGGAAGAGTTCTTCTATGAGAAGGCAATCTTGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CCA 72 bp | TCTGAAACATCTGTTTGCTTAATCACACTCCCAATGTaGTTCTGCTGCATCAGGAGATTCGTCAGCTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: SETSVCLITLPM*FCCIRRFVSSA Trigger: TGCCGAGCTGACGAATCTCCTGATGCAGCAGAACCACATTGGGAGTGTGATTAAGCAAACAGATGTTTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CCA 72 bp | CTTACTAATCAGCAGGTAGAAGCAGCATTTCCCACATaGCTTGTTGGTTCTTCGCGCCTCAGACAGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: LTNQQVEAAFPT*LVGSSRLRQFF Trigger: AAAGAACTGTCTGAGGCGCGAAGAACCAACAAGCCATGTGGGAAATGCTGCTTCTACCTGCTGATTAGTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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| CDS CAA 72 bp | TTAATGAATCTTTCACTTAGCAGAAGGCCCACAGGCTaGCTGGTGTCATTCAAAAGCTTGTCCAGCTGTTCA | + |
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Preference number: 6 (lower is better) Translates to: LMNLSLSRRPTG*LVSFKSLSSCS Trigger: TGAACAGCTGGACAAGCTTTTGAATGACACCAGCAAGCCTGTGGGCCTTCTGCTAAGTGAAAGATTCATTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033282.5 |
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